Citrus Sinensis ID: 018636
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | 2.2.26 [Sep-21-2011] | |||||||
| P54120 | 353 | Protein AIG1 OS=Arabidops | no | no | 0.798 | 0.796 | 0.476 | 8e-63 | |
| O81025 | 463 | Putative protein PHLOEM P | no | no | 0.812 | 0.617 | 0.434 | 2e-58 | |
| Q9NUV9 | 329 | GTPase IMAP family member | yes | no | 0.747 | 0.799 | 0.326 | 3e-38 | |
| Q8K3K9 | 310 | GTPase IMAP family member | yes | no | 0.559 | 0.635 | 0.403 | 5e-33 | |
| Q8NHV1 | 300 | GTPase IMAP family member | no | no | 0.590 | 0.693 | 0.336 | 6e-28 | |
| Q99JY3 | 219 | GTPase IMAP family member | no | no | 0.522 | 0.840 | 0.373 | 8e-28 | |
| Q8WWP7 | 306 | GTPase IMAP family member | no | no | 0.571 | 0.656 | 0.347 | 6e-27 | |
| Q75N62 | 688 | GTPase IMAP family member | no | no | 0.511 | 0.261 | 0.4 | 8e-26 | |
| Q8ND71 | 665 | GTPase IMAP family member | no | no | 0.548 | 0.290 | 0.379 | 2e-25 | |
| Q8BWF2 | 308 | GTPase IMAP family member | no | no | 0.548 | 0.626 | 0.35 | 3e-24 |
| >sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 241 bits (614), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 191/294 (64%), Gaps = 13/294 (4%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
+VL+GRTGNGKSATGNSI+ K FK+ SSGVT C V +G ++NVIDTPGLF
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLF 103
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
DLS +EF+GKEIVKCL +A G+HA L+V SV R SQEEE + L LFG + DY+
Sbjct: 104 DLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYL 163
Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200
IVVFTGGD LED TLED+LG P LK +L LC R +LFDNKTKD+ K T+QV +L
Sbjct: 164 IVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHEL 223
Query: 201 LSLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREISKLMGQMQESYE 257
L L++ V QN PYTDE+ E ++ K E + L K +S+ +++ LM ++Q E
Sbjct: 224 LKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKELQIMNE 283
Query: 258 DRIKRMAEMVESGLK---ETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQ 308
+K MAEM+E +K E +L +Q R +A+E++ +M+++++++
Sbjct: 284 RNLKAMAEMMEKNMKIAMEAQEKLFEQ-------REKAQEMSYQQKMEMQEKLK 330
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 186/290 (64%), Gaps = 4/290 (1%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG K FK+ + GVT CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
D + + EI+ CL MA++GIHA L+V S R S+EEE+ V+ L +FG + DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
IVVFTGGDDLE+ ++TL+D+ CP+ L ++L+LC R VLFDNK+KDE K EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDR 259
LL+ V +V Q GG PYT +L R E D++ + SK + +MQ++
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQNLLME 245
Query: 260 IKRMAEMVESGLKETTTRLE--QQLAKEQAARLRAE-EVAQLAEMKLKDE 306
+++ +M E+ K+ + E ++L +++ A+ RAE E+A + KL+ E
Sbjct: 246 KEKL-QMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVEKLQME 294
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 165/273 (60%), Gaps = 10/273 (3%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
P N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ K+ ++V V+
Sbjct: 26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
DTPG+FD + KEI++C+ + G HA L+V + R+++EE A ++ +FG+
Sbjct: 85 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
+MI++FT DDL D L D+L E P+ +++++ + +R +NK A+
Sbjct: 144 RARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATG-AEQE 199
Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQE 254
Q QLL L+ V+ +N YT+ + + A E + + + +++E + E+ + +++E
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE--EIQKQTQAMQELHRVELEREKARIRE 257
Query: 255 SYEDRIKRMAEMVESGLKETTTRLEQQLAKEQA 287
YE++I+++ + VE ++ ++E++LA+++A
Sbjct: 258 EYEEKIRKLEDKVEQ--EKRKKQMEKKLAEQEA 288
|
May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Homo sapiens (taxid: 9606) |
| >sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 6/203 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILGRKAF + + +TK CE K + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
KEI +C+ + G HA L+V + ++ EE A +L ++F K +MI
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
++ T DDLED + + ++L P+ L+E++ NR LF+NK A+ EQ RQLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLL 206
Query: 202 SLVNSVIVQNGGQPYTDELKRGA 224
+LV S++ +NGG+ +T+++ A
Sbjct: 207 TLVQSMVRENGGKYFTNKMYESA 229
|
May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+G+TG+GKSAT N+ILG + F + + VTK C+ K + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
+ KEI +C+ + G HA ++V + R+++EE+ V + +FGK+ +M+
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
++FT ++LE ++ DF+ + LK I++ C NRC F N K +A+ QV++L
Sbjct: 129 ILFTRKEELEG--QSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185
Query: 201 LSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
+ L+ ++ N G ++D++ + E ++ EV
Sbjct: 186 VELIEKMVQCNEGAYFSDDIYKDTEERLKQREEV 219
|
Homo sapiens (taxid: 9606) |
| >sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILG K F + + +TK CE + + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
+EI + + + G HA L+V + R++ EE A ++ ++FGK +MI
Sbjct: 92 TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
++ T DDLED + + ++L + PK +E++ NR LF+N+ A+ EQ QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASG-AEKEEQKMQLL 206
Query: 202 SLVNSVIVQN 211
+LV S+ + +
Sbjct: 207 TLVQSMFLSS 216
|
Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis. Mus musculus (taxid: 10090) |
| >sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 12/213 (5%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG++ F + G++ VT+ C + D V V+DTP +
Sbjct: 28 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86
Query: 80 FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
F G +E C ++ G HA L+V + RF+ +++ AV ++ ++FG++V
Sbjct: 87 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 145
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
+M++VFT +DL +L D++ + + L+E++ C R FDN+ A G E
Sbjct: 146 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 199
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELR 228
QV QLL +V +++++ G Y++E+ A LR
Sbjct: 200 QVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLR 232
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Homo sapiens (taxid: 9606) |
| >sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 10/190 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLGR+G GKSATGN+ILGR AF + + VT + + L D Q V V+DTP F
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FI 535
Query: 82 LSAGSE----FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
+ G+E + +EI CL + ++G+ F++V + RF+QE+E V +L F +N+
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIM 594
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
YMIV+FT +DL D + L D+ + K LK+IL+ C+ R F+NK E + T QV
Sbjct: 595 KYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQET-QV 651
Query: 198 RQLLSLVNSV 207
+ LL + NS+
Sbjct: 652 KGLLKIANSL 661
|
Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections. Mus musculus (taxid: 10090) |
| >sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 10/203 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--- 78
+VL+GR+G GKSATGNSILG F + + VTKT + DGQ V V+DTP
Sbjct: 441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQ 499
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
+ D+ + +E+ +CL + G F++VF + RF++E++TAV +L +FG +
Sbjct: 500 MLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTK 558
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
Y I++FT +DL LEDF+ + K L+ I + C R F+NK +A+ T QV+
Sbjct: 559 YAIMLFTRKEDL--GAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QVK 615
Query: 199 QLLSLVNSVIVQNG--GQPYTDE 219
LL+ VN + ++G G P+T E
Sbjct: 616 ALLTKVNDLRKESGWSGYPHTQE 638
|
Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections. Homo sapiens (taxid: 9606) |
| >sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNSIL R AF++ VT+T + +T +G+ + V+DTP +F+
Sbjct: 29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
A ++ + K+I C + G H L+V + RF+ E+ AV + +FG V +MI
Sbjct: 88 SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
V+FT +DLE EK+LE+F+ H + L+ + Q C R F+N+ +E +G Q+ +L
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQG--QLAEL 202
Query: 201 LSLVNSVIVQNGGQPYTDEL 220
++LV + + G ++++L
Sbjct: 203 MALVRRLEQECEGSFHSNDL 222
|
Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| 255539412 | 339 | aig1, putative [Ricinus communis] gi|223 | 0.923 | 0.958 | 0.679 | 1e-125 | |
| 296089429 | 345 | unnamed protein product [Vitis vinifera] | 0.923 | 0.942 | 0.652 | 1e-122 | |
| 225460273 | 340 | PREDICTED: protein AIG1 [Vitis vinifera] | 0.923 | 0.955 | 0.652 | 1e-122 | |
| 363814318 | 336 | uncharacterized protein LOC100807910 [Gl | 0.875 | 0.916 | 0.666 | 1e-116 | |
| 356526433 | 350 | PREDICTED: protein AIG1-like [Glycine ma | 0.860 | 0.865 | 0.674 | 1e-116 | |
| 224146305 | 335 | predicted protein [Populus trichocarpa] | 0.875 | 0.919 | 0.664 | 1e-115 | |
| 449464872 | 341 | PREDICTED: protein AIG1-like [Cucumis sa | 0.875 | 0.903 | 0.658 | 1e-110 | |
| 388500386 | 335 | unknown [Lotus japonicus] | 0.920 | 0.967 | 0.592 | 1e-106 | |
| 4097585 | 344 | NTGP4, partial [Nicotiana tabacum] | 0.869 | 0.889 | 0.612 | 1e-105 | |
| 357470409 | 346 | AIG1 [Medicago truncatula] gi|355506544| | 0.875 | 0.890 | 0.629 | 1e-104 |
| >gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/334 (67%), Positives = 265/334 (79%), Gaps = 9/334 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D DW+ TSPSNG RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1 MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKC+ MAKDGIHA LVVFSV RFSQE
Sbjct: 61 QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+ L LFG +FDYMIVVFTGGD+LED+++TLED+LG ECP+PL+EIL LC NR
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNKTKDE K EQV QLLSLVN VI +NGGQPYTD ELK A +LRD++ EVDS
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
LK YSK EI +L QM SYE+++KR+ EMVE L+ETT RLEQQLA+EQAARL+AEE A
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARLKAEEKA 300
Query: 297 QLAEMKLKDEIQS-----RSTEKETAEPPKPSEN 325
QLA+MK DEI+ +KET E + +E+
Sbjct: 301 QLAQMKSNDEIRQLRENLERAQKETQELRRQAES 334
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 271/334 (81%), Gaps = 9/334 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 6 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV RFS+E
Sbjct: 66 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+H L LFG + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNKTKDEAK EQV++LLSLVNSVI+QNGGQPYTD ELK+GA +LRD+ EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ YSKREI L QM +SYE+++KR+ EMVE L+ETT +LE+QLA+EQAARL+AEE+A
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 305
Query: 297 QLAEMKLKDEIQS-----RSTEKETAEPPKPSEN 325
Q A++ DEI+ ++ET E K +E+
Sbjct: 306 QRAQLASNDEIRKLRENLERAQRETEELRKRAES 339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 271/334 (81%), Gaps = 9/334 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV RFS+E
Sbjct: 61 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+H L LFG + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNKTKDEAK EQV++LLSLVNSVI+QNGGQPYTD ELK+GA +LRD+ EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ YSKREI L QM +SYE+++KR+ EMVE L+ETT +LE+QLA+EQAARL+AEE+A
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 300
Query: 297 QLAEMKLKDEIQS-----RSTEKETAEPPKPSEN 325
Q A++ DEI+ ++ET E K +E+
Sbjct: 301 QRAQLASNDEIRKLRENLERAQRETEELRKRAES 334
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/312 (66%), Positives = 253/312 (81%), Gaps = 4/312 (1%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG + DW+ TS SN RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1 MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+TT L DGQ+VNVIDTPGLFDLS GSEFVGKEIVKC+ +AKDGIHA +VVFSV RF++E
Sbjct: 61 QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EETA+ L LFG + DYMIVVFTGGD+LE++ +TLED+LG ECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDS 236
VLFDNKTKDE K QV+QLLS VN+V+ +NGG+PYTDE LK+GA EL +++ EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
LK YSK EI K QMQ++Y+D++KR+ E+VES L+E T RLEQQL +EQAARL+AEE A
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQAARLKAEENA 300
Query: 297 QLAEMKLKDEIQ 308
LA+M+ DEI+
Sbjct: 301 MLAQMRSDDEIR 312
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/307 (67%), Positives = 255/307 (83%), Gaps = 4/307 (1%)
Query: 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
+D DW+ TS SN RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20 IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+GQ+VNVIDTPGLFDLSAGSEFVGKEIVKC+ +AKDGIHA +VVFSV RF++EEETA+
Sbjct: 80 NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
L LFG + DYMIVVFTGGD+LE++++TLED+LG ECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYS 241
KTKDE K QV+QLLS VN V+ +NGG+PYTDE LK+GA EL +++ EVDSLK YS
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259
Query: 242 KREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEM 301
K EI + QMQ++Y++++KR+ EMVES L+E T RLE+QLA+EQAARL+AEE A LA+M
Sbjct: 260 KGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQM 319
Query: 302 KLKDEIQ 308
+ DEI+
Sbjct: 320 RSDDEIR 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/313 (66%), Positives = 252/313 (80%), Gaps = 5/313 (1%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D DW+ SPSNG RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1 MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV RFSQE
Sbjct: 61 QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+ L LFG + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L LC+NR
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
VLF+NKTKD KG EQV++LLSLVN VI QNGGQPY+DEL ++G R ++ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240
Query: 237 LK-EYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEV 295
LK +S EIS+L QM+ YED++KR+ +MVE LKE T LE++LA+EQAARLRAEE
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAARLRAEES 300
Query: 296 AQLAEMKLKDEIQ 308
AQL + K +EI+
Sbjct: 301 AQLEQRKSNEEIR 313
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/316 (65%), Positives = 255/316 (80%), Gaps = 8/316 (2%)
Query: 1 MGERVVDGDWKP--TSPSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56
MG ++ DW+ TSP+NG RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT
Sbjct: 1 MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60
Query: 57 TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR 116
T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKC+ MAKDGIHA LVVFSV R
Sbjct: 61 TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120
Query: 117 FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176
FS EEE A+ L LFG + +YMIVVFTGGD+LE++E+TLED+LG CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180
Query: 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKA 232
NRCVLFDNKTKDE + QV+QLLSLVN +++QNGGQPY+D ELK GA +LRD++
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240
Query: 233 EVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRA 292
EVDSL+ Y+++E+ +L QM SY++++KR+ EMVES L+ETT RLEQQLA+EQAARL+A
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQAARLKA 300
Query: 293 EEVAQLAEMKLKDEIQ 308
EE AQ A+ K DEI+
Sbjct: 301 EENAQHAQRKSNDEIR 316
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 253/331 (76%), Gaps = 7/331 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG D DW+ TS +N RTVV +GRTGNGKSATGNSILG+K FK+ A S GVT +CE
Sbjct: 1 MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
T L DGQ VNVIDTPGLFD+SAGS+FVGKEIV C+ +AKDGIHA +VVFSV RFSQE
Sbjct: 61 HTIEL-DGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
E TA+ L LFG ++DY +VVFTGGD+LE+ ++TLED+LG +CP+PLK++L LC+NR
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
+LFDNKTKDE K +EQV+QL S VN V+ QNGG+PYTD ELK+GA +L +++++V+S
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNS 239
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ +S +EI + Q +++Y+D++KR+AEMVES L++ T RLEQQLAKEQAARL+AEE A
Sbjct: 240 LEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQAARLKAEENA 299
Query: 297 QLAEMKLKDEIQS--RSTEKETAEPPKPSEN 325
LA ++ EI+ + E+ E K EN
Sbjct: 300 NLARVRSDKEIRELRKHLERAHEELRKHGEN 330
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 247/312 (79%), Gaps = 6/312 (1%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG + DW+ +NG RT+VL+GRTGNGKSATGNSILGRKAF++ + S+GVT TCE+
Sbjct: 6 MGGSAISDDWEF--AANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ TVL+DGQ+++VIDTPGLFD SA EF+G EIVKC+ MAKDGIHA LVV SV RFS+E
Sbjct: 64 QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
E+ AV L FG + DYM++VFTGGDDLED+E+TLED+LG +CP+PLK+IL +C NR
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNK+KD K +Q++QLLSLVN V+ NGG+PYTD ELK+GA +LR++ EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L YSK+EI +L QMQ+SYE++++R+ E+VES LK+TT RLE+QLAKEQAARL AE A
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSA 303
Query: 297 QLAEMKLKDEIQ 308
+ A+ K +EI+
Sbjct: 304 KEAQKKSDNEIR 315
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470409|ref|XP_003605489.1| AIG1 [Medicago truncatula] gi|355506544|gb|AES87686.1| AIG1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/321 (62%), Positives = 251/321 (78%), Gaps = 13/321 (4%)
Query: 1 MGERVVDGDWKPTSP---------SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS 51
MG V+ DW+ S +N RTVVL+GRTGNGKSATGNSILG+K FK+ A S
Sbjct: 1 MGGSYVEDDWELASSGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASS 60
Query: 52 SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVF 111
SGVT +CEM+T L DGQ+VNVIDTPGLF++SAGSEF+GKEIVKC+ AKDGIHA LVV
Sbjct: 61 SGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVL 120
Query: 112 SVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171
SV +RFS+EEE A+ L LFG + DYMIVVFTGGD+LED E TL+D+LG ECP+ LK+
Sbjct: 121 SVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDELEDDEDTLDDYLGRECPESLKQ 180
Query: 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATEL 227
IL LC NRCVLFDNKTKDE K + QV+QLLS VN +++QNGGQPYTD ELK+GA +L
Sbjct: 181 ILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVLQNGGQPYTDELFAELKKGAMKL 240
Query: 228 RDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQA 287
++ +VDSL+ YS+ +IS+L MQ++YE+++K + EM+ES LKE TTRLE+QLA+EQA
Sbjct: 241 HREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQA 300
Query: 288 ARLRAEEVAQLAEMKLKDEIQ 308
ARLRAE+ A+LA+ K DEI+
Sbjct: 301 ARLRAEDSAKLAQKKSDDEIR 321
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| TAIR|locus:2009041 | 342 | AT1G33970 [Arabidopsis thalian | 0.894 | 0.921 | 0.544 | 3.2e-88 | |
| TAIR|locus:2203807 | 353 | AIG1 "AVRRPT2-INDUCED GENE 1" | 0.803 | 0.801 | 0.475 | 3.7e-64 | |
| TAIR|locus:2203817 | 311 | AT1G33950 [Arabidopsis thalian | 0.761 | 0.861 | 0.465 | 1.4e-62 | |
| TAIR|locus:2203832 | 336 | AT1G33930 [Arabidopsis thalian | 0.775 | 0.812 | 0.474 | 5.5e-61 | |
| TAIR|locus:2140558 | 394 | AT4G09940 [Arabidopsis thalian | 0.832 | 0.743 | 0.435 | 9e-61 | |
| TAIR|locus:2203797 | 326 | AT1G33900 [Arabidopsis thalian | 0.775 | 0.837 | 0.438 | 1.7e-59 | |
| TAIR|locus:2140568 | 336 | AT4G09950 [Arabidopsis thalian | 0.860 | 0.901 | 0.421 | 5.7e-59 | |
| TAIR|locus:2203802 | 334 | AT1G33890 [Arabidopsis thalian | 0.747 | 0.787 | 0.440 | 2.5e-58 | |
| TAIR|locus:2039528 | 463 | PP2-A3 "phloem protein 2-A3" [ | 0.812 | 0.617 | 0.437 | 4e-58 | |
| TAIR|locus:2203792 | 301 | AT1G33910 [Arabidopsis thalian | 0.741 | 0.867 | 0.447 | 3.7e-55 |
| TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 177/325 (54%), Positives = 239/325 (73%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +++ DW+ S SN +RT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE
Sbjct: 6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ V +DG ++NV+DTPGLFDLS ++F+GKEIV+C+ +A+DGIHA L+VFSV R ++E
Sbjct: 66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSV-RRLAEE 124
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
E+T + L LFG + DYMIVVFTGGD+LE++E+TLE++L CP+ LKEIL +CDNR
Sbjct: 125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
VLF+NKT D+ K EQV++LLSLV SV+ QN G+PY+DEL + A +LRD+K EV+
Sbjct: 185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ YS EI + Q+ SY+ ++ R+ EMVE+ L++T RLEQQL +EQAARL AE+ A
Sbjct: 245 LQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQLGEEQAARLEAEKRA 304
Query: 297 QLAEMKLKDEIQS-----RSTEKET 316
+ + DEI+ EKET
Sbjct: 305 NEVQKRSSDEIKKLRENLERAEKET 329
|
|
| TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 138/290 (47%), Positives = 192/290 (66%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+GRTGNGKSATGNSI+ K FK+ SSGVT C V +G ++NVIDTPGLFD
Sbjct: 45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
LS +EF+GKEIVKCL +A G+HA L+V SV R SQEEE + L LFG + DY+I
Sbjct: 105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
VVFTGGD LED TLED+LG P LK +L LC R +LFDNKTKD+ K T+QV +LL
Sbjct: 165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELL 224
Query: 202 SLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREISKLMGQMQESYED 258
L++ V QN PYTDE+ E ++ K E + L K +S+ +++ LM ++Q E
Sbjct: 225 KLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKELQIMNER 284
Query: 259 RIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQ 308
+K MAEM+E +K +++L ++ R +A+E++ +M+++++++
Sbjct: 285 NLKAMAEMMEKNMK-IAMEAQEKLFEQ---REKAQEMSYQQKMEMQEKLK 330
|
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| TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 127/273 (46%), Positives = 182/273 (66%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
S +VL+GRTGNGKSATGNS++G+K F + A +SGVT C+ V KDG +NVID
Sbjct: 13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72
Query: 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
TPGLFDLS +E++ KEIV+CL +A+ GIHA L+V S R +QEEE + L LFG
Sbjct: 73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
+ DY++VVFTGGD LE+ ++TLED+LG +CP +KE++++ NR V+ DNKT DE K E
Sbjct: 133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAE 192
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYSKREISKLMGQ 251
QV +LLSLV+ + G+ YTD+ +K + +LR E++S K YS+ +++ Q
Sbjct: 193 QVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELES-KNYSEECAAEMKNQ 251
Query: 252 MQESYEDRIKRMAEMVESGLKETTTRLEQQLAK 284
Y++ +K+M+E +E LK+ E+ L+K
Sbjct: 252 SLILYKENLKQMSEQLEKKLKDAAEAQEKALSK 284
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| TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 131/276 (47%), Positives = 178/276 (64%)
Query: 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ 69
W+ S S + VVL+GRTGNGKSATGNSI+GRK F++ + GVT C+ V DG
Sbjct: 26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85
Query: 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129
++NVIDTPGLFDL+ +EF+ KEIV CL +A++G+HA ++V S++ R SQEEE A+ L
Sbjct: 86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQ 145
Query: 130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKD 189
LFG + DY+IVVFT GD LED TLED+L + CP+ LK +L+LC R V+FDN+TKD
Sbjct: 146 MLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKD 205
Query: 190 EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE--LRDKKAEVD-SLKEYSKREIS 246
E +QV+QLL V ++ + GG P+TD + R E R K+ E + K + E +
Sbjct: 206 EGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEKNIADEEKA 265
Query: 247 KLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQL 282
L Q+ SY + MA M+E KET E+Q+
Sbjct: 266 ALKKQLDMSYSQNMNMMALMMERIFKETAAANERQM 301
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| TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 131/301 (43%), Positives = 205/301 (68%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
RT++L+GR+GNGKSATGNSILGRKAFK+ +SGVT CE++++ L +GQ++NVIDTPGL
Sbjct: 48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
F LS +EF +EI++C + K+GI A L+VFS+ NR ++EE++A+ L LFG + DY
Sbjct: 108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVR 198
MIVVFT D LED T E++L + P KEIL+ C++R VLF N++ ++ +QV+
Sbjct: 168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225
Query: 199 QLLSLVNSVIVQNGGQPYTD---ELKRGATELRDKKAEVDSLKE-YSKREISKLMGQMQE 254
+LL+ V + NG D E++ T + K+ E+ +K Y+++E+ ++ M++
Sbjct: 226 ELLNYVEEIARLNGKSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDMEK 285
Query: 255 SYEDR-IKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTE 313
S+E++ +++M E VE+ L+ET RLEQQL +E++ARL E+ A+ E + D ++ + E
Sbjct: 286 SFENQQLRQMMERVETELRETKERLEQQLKEEKSARLELEKRAKEVEKRSSDVVKELNDE 345
Query: 314 K 314
+
Sbjct: 346 Q 346
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| TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 122/278 (43%), Positives = 183/278 (65%)
Query: 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
D + S S + +VL+GRTGNGKSATGNS++G++ F++ ++GVT CE V G
Sbjct: 9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68
Query: 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
+NVIDTPGLFDLS +E++ +EI+ CL +A+DG+HA ++V SV R SQEEE ++ L
Sbjct: 69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTL 128
Query: 129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
+FG + DY++V+FTGGD+LE + TL+D+L CP+ LK +L+LC R +LFDN+T
Sbjct: 129 QVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTT 188
Query: 189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRG----ATELRDKKAEVDSLKEYSKRE 244
DE K +QV++LL+ V ++ G P+TDE+ R A LR+++ EV+S K+ + E
Sbjct: 189 DEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVES-KDLAAAE 247
Query: 245 ISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQL 282
I K Q ++ + MAEM+ + L+E + R E+ L
Sbjct: 248 IEKWKKHYQTEHDKNMNMMAEMLGNRLREDSERQEKML 285
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| TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 136/323 (42%), Positives = 205/323 (63%)
Query: 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
V+ DWKP ERT+VLLGRTGNGKSATGNSILG+ F++ A +TK C++ + L
Sbjct: 10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+G +NVIDTPGLF S+ ++F +EIV+CL +AK GI A L+VFS+ NR ++EE++ +
Sbjct: 64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
L LFG + DY+IVVFT D LE E TL+D+L +CP+ +EIL+ CD+R VLFDN
Sbjct: 124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYL-EDCPE-FQEILEECDDRKVLFDN 180
Query: 186 K-TKDEAKGTEQVRQLLSLVNSVIVQNGGQPY----TDELKRGATELRDKKAEVDSLKEY 240
+K QV LL+LV + +N G+ Y + EL+ +++K+ +++ +K +
Sbjct: 181 SYNAPVSKKDRQVHDLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQKQIEEMKGW 240
Query: 241 S-KREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLA 299
S K+EIS++ ++++S+ + ++ + E + + LKE+ +++QLAK QA R E+
Sbjct: 241 SSKQEISQMKKELEKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQAEREETEKKMNEI 300
Query: 300 EMKLKDEI-----QSRSTEKETA 317
+ DEI Q EKETA
Sbjct: 301 QKLSSDEIRRLREQLNKAEKETA 323
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| TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 118/268 (44%), Positives = 179/268 (66%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKSATGNS++G+ F + A ++GVTKTC+ V G +NVIDTPGL
Sbjct: 14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
FDLS +EF+ KEI+ CL +A+ G+H ++V SV R +QEEE + L LFG + DY
Sbjct: 74 FDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDY 133
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
+IV+FTGGD+LE + +TL+D+ CP LK +L LCD+R V+F+N TKD+ K EQV+Q
Sbjct: 134 LIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKKVEQVQQ 193
Query: 200 LLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
L+LV V +N G+P+ E+K L+ +K V++ + E++K+ ++Q
Sbjct: 194 FLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEA-SNLGEAELAKMKKELQME 252
Query: 256 YEDRIKRMAEMVESGLKETTTRLEQQLA 283
++ R+ +M +MV++ LKET+ E+ ++
Sbjct: 253 HDTRMSQMEDMVKNMLKETSAAHERMVS 280
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| TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 127/290 (43%), Positives = 184/290 (63%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG K FK+ + GVT CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
D + + EI+ CL MA++GIHA L+V S R S+EEE+ V+ L +FG + DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
IVVFTGGDDLE+ ++TL+D+ CP+ L ++L+LC R VLFDNK+KDE K EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDR 259
LL+ V +V Q GG PYT +L R E D++ + SK + +MQ++
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQNLLME 245
Query: 260 IKRMAEMVESGLKETTTRLE--QQLAKEQAARLRAE-EVAQLAEMKLKDE 306
K +M E+ K+ + E ++L +++ A+ RAE E+A + KL+ E
Sbjct: 246 -KEKLQMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVEKLQME 294
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| TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 123/275 (44%), Positives = 178/275 (64%)
Query: 15 PSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
PS E R +VL+G TGNGKS+TGNS++G++ F KTC+ KT DGQ++N
Sbjct: 7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKAKTL---DGQIIN 60
Query: 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
VIDTPGLFDLS ++++ KEI+ CL + G+HA ++V SV +EEE A+++L LF
Sbjct: 61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120
Query: 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
G + DY++V+FTGGD LE KTL+D+L CP+ LK +L+LC R VLF+NKT DE K
Sbjct: 121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTTDEVK 180
Query: 193 GTEQVRQLLSLVNSVIVQNGGQP-YTDEL----KRGATELRDKKAEVDSLKEYSKREISK 247
EQV+QLL+ V ++ NGG+ +T+E KR L +++ EV S K+ E+ +
Sbjct: 181 KIEQVKQLLAHVEAIENLNGGKALFTEENDLNEKRQGEMLMEQEMEVQS-KKPENTEVEE 239
Query: 248 LMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQL 282
+ Q++ SY ++ MA+MVE LKE++ E+ L
Sbjct: 240 MKKQLEISYGQQMNMMAQMVEDTLKESSASHERML 274
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021940001 | SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 352 | |||
| pfam04548 | 211 | pfam04548, AIG1, AIG1 family | 1e-95 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 8e-91 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-11 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 2e-10 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-07 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 5e-07 | |
| TIGR00993 | 763 | TIGR00993, 3a0901s04IAP86, chloroplast protein imp | 1e-06 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 1e-05 | |
| TIGR00991 | 313 | TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch | 5e-05 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 1e-04 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 1e-04 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-04 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 7e-04 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 0.001 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.002 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 0.003 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.003 | |
| PRK05431 | 425 | PRK05431, PRK05431, seryl-tRNA synthetase; Provisi | 0.004 |
| >gnl|CDD|218141 pfam04548, AIG1, AIG1 family | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 1e-95
Identities = 113/216 (52%), Positives = 157/216 (72%), Gaps = 9/216 (4%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+VL+G+TGNGKSATGNSILGRKAF++ + GVTKTC++ + DG+++NVIDTPGL
Sbjct: 1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
FDLS ++F+ KEI++CL +A+ G HA L+V S+ RF++EEE A+ L LFG + DY
Sbjct: 60 FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
MIVVFT DDLED +L+D+L CP+ LKE+L+ C R VLF+NK D + EQV+Q
Sbjct: 119 MIVVFTRKDDLED--DSLDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175
Query: 200 LLSLVNSVIVQNGGQPYTDEL----KRGATELRDKK 231
LL+LV +++ +NGG+PYT++L K LR+K+
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKEEGERLREKQ 211
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Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 8e-91
Identities = 103/207 (49%), Positives = 144/207 (69%), Gaps = 6/207 (2%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+VL+G+TGNGKSATGN+ILGRK F++ +SGVTKTC+ ++ V DG+ VNVIDTPGL
Sbjct: 1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
FD S E + KEI++CL ++ G HAFL+V + RF++EEE AV L LFG+ V D+
Sbjct: 60 FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPL-GRFTEEEEQAVEELQELFGEKVLDH 118
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
IV+FT GDDLE +LED+L + + LK +L+ C R V F+NK K + +QV++
Sbjct: 119 TIVLFTRGDDLEG--GSLEDYL-EDSCEALKRLLEKCGGRYVAFNNKAKGREQ-EQQVKE 174
Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATE 226
LL+ V ++ +NGG+PYT+E+ A E
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAEE 201
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This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFD 81
V++GR G GKS+ N++LG + + S G T+ ++ L G+V + ++DTPGL +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
F G + + G L+V T+R S EE+ + L L + + +I
Sbjct: 60 ------FGGLGREELARLLLRGADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PII 110
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
+V D LE+ E L+E+ ++ KT + G +++ + L
Sbjct: 111 LVGNKIDLLEEREVEEL--------LRLEELAKILGVPVFEVSAKTGE---GVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
T+++LG+TG GKS+T NSI G + SA S + E+ TV DG +N+IDTPGL
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90
Query: 81 DLSAGS 86
+
Sbjct: 91 ESQDQR 96
|
The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82
+ GR GKS+ N++LG+ S G T+ K L V +IDTPGL +
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59
Query: 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142
+E + A LV+ V + + EE A L GK V ++
Sbjct: 60 GGLGRERVEEARQVAD------RADLVLLVVDSDLTPVEEEAKLGLLRERGKPV----LL 109
Query: 143 VFTGGDDLEDHEK 155
V D + + E+
Sbjct: 110 VLNKIDLVPESEE 122
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
V L+GR GKS N++ G K S G T+ + VL G+ + ++DTPGL
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGLI 57
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
+ A + + L ++ L+V + ++++E + L L K +
Sbjct: 58 E-GASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKK----PI 111
Query: 141 IVVFT 145
I+V
Sbjct: 112 ILVLN 116
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
+++LG++G GKSAT NSI G F A G T E++ V G + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176
Query: 81 DLSAGSE 87
S+ S+
Sbjct: 177 -KSSASD 182
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTP 77
+ ++G GKS N++LG + +GVT T + T + L G V ++DTP
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54
Query: 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
GL + + + A + V S ++ E + + GK +F
Sbjct: 55 GLNSTIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF 107
Query: 138 DYMIVVFTGGDDLEDHE 154
V D L + E
Sbjct: 108 ----FVLNKIDLLSEEE 120
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
T++++G+ G GKS+T NSI+G + SA S G+ +T + G +N+IDTPGL
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV----------TNRFSQEEETAVHRLP 129
+ ++ A + I FL+ ++ R + + +
Sbjct: 97 IEGGYIND-----------QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAIT 145
Query: 130 NLFGKNVFDYMIVVFT 145
+ FGK+++ +VV T
Sbjct: 146 DSFGKDIWRKSLVVLT 161
|
[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 23/152 (15%)
Query: 215 PYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQM-----------QESYEDRIKRM 263
P TDE K E R + E K+ + + +M E+ E + R
Sbjct: 278 PLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRT 337
Query: 264 AEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPS 323
AE E+ ++ +++ A+ + R +E A + + + +K+ P+
Sbjct: 338 AEKNEAKARKKEIAQKRRAAEREINREARQERAAAMA-RARARRAAVKAKKKGLIDASPN 396
Query: 324 E-----------NPPPEPPRPPASPPPKPSST 344
E +PP A P +PS
Sbjct: 397 EDTPSENEESKGSPPQVEATTTAEPNREPSQE 428
|
Length = 429 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VVLLG +G GKS+ N ++ +SG T E +V + + V D D
Sbjct: 3 VVLLGDSGVGKSSLANIFTAGVYEDSAYEASG-DDTYERTVSVDGEEATLVVYDHWEQED 61
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--FSQEEET 123
+ C+ + A+++V+SVT+R F + E
Sbjct: 62 GMWLEDS-------CMQV----GDAYVIVYSVTDRSSFEKASEL 94
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDT 76
E +V++G GKS N +LG K G T+ T + +DG+ N++DT
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVT-TVIEEDGKTYKFNLLDT 58
Query: 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136
G D A + + + L VF + EE + +
Sbjct: 59 AGQEDYDAIRRLYYRAVE-----------SSLRVFDIVILVLDVEEILEKQTKEIIHHAE 107
Query: 137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPK----PLKEI-LQLCDNRCVLFD 184
I++ DL D L+ + K P+ + + N F
Sbjct: 108 SGVPIILVGNKIDLRD--AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 158
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 73/320 (22%), Positives = 113/320 (35%), Gaps = 85/320 (26%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTP 77
+ TV L+G GK+ N++ G A + GVT E K LK G + ++D P
Sbjct: 3 KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58
Query: 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL------ 131
G + L+A SE E V + + + V TN + R NL
Sbjct: 59 GTYSLTAYSE---DEKVARDFLLEGKPDLIVNVVDATN---------LER--NLYLTLQL 104
Query: 132 --FGKNVFDYMIVVFTGGDDLED-----HEKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184
G MI+ D+ + + L LG P
Sbjct: 105 LELGIP----MILALNMIDEAKKRGIRIDIEKLSKLLG--VP------------------ 140
Query: 185 NKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLK--EYSK 242
+V +V + G +ELKR EL + K + E +
Sbjct: 141 ------------------VVPTVAKRGEG---LEELKRAIIELAESKTTPREVDYGEEIE 179
Query: 243 REISKLMGQMQESYEDRIKRM--AEMVESGLKETTTRLEQQLAK----EQAARLRAEEVA 296
EI +L ++ IK + E+VE+ LKE R+E+ L + E L A+
Sbjct: 180 EEIKELEALSEDPRWLAIKLLEDDELVEAVLKEPEKRVEELLEELSEEEGHLLLIADARY 239
Query: 297 QLAEMKLKDEIQSRSTEKET 316
L E L+ ++ EK +
Sbjct: 240 ALIERILRSVVKQEEEEKSS 259
|
Length = 653 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN--VIDTPGL 79
+ +LG +G GKSA L ++ + + ++ DG+ V+ + DTPG
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTI----DGEQVSLEIQDTPGQ 57
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
+ + L A F++V+S+T+R S + + + +L
Sbjct: 58 QQNEDPES-----LERSLRWA----DGFVLVYSITDRSSFDVVSQLLQL 97
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 219 ELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRL 278
EL++ A E E + LKE + + KL + ED++ AE KE +
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKL-----QEEEDKLLEEAE------KEAQQAI 579
Query: 279 EQQLAKEQAA----RLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPP 334
++ AK++A LR + A +K + I++R + E + + E
Sbjct: 580 KE--AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
Length = 782 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.003
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV++G G+GKS+ + ++G + G V D ++N+ D
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQG-DTLAVDTLEVDGDTGLLNIWDF----- 55
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYM 140
G E + E + + A A L+V+ +T+R S E + + LPNL +
Sbjct: 56 --GGREELKFEHIIFMKWAD----AILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPV 109
Query: 141 IVV 143
I+V
Sbjct: 110 ILV 112
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 218 DELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMV--ESGLKETT 275
EL +E R ++A++ L E E K + Q+ K++ E+ ES LK
Sbjct: 185 AELTTLLSEQRAQQAKLAQLLE----ERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240
Query: 276 TRLEQQLAK--EQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSEN 325
E AK E AA A A + ET +P P +
Sbjct: 241 ASAEAAAAKAREAAAAAEAAAARARAAEAKR--------TGETYKPTAPEKM 284
|
Length = 420 |
| >gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 0.004
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 218 DELKRGATELRDKKAEVDSLKEYSKR-EISKLMGQMQESYEDRIKRMAEMVESGLKETTT 276
DEL E R+ + E++ L+ ++R +SK +GQ + ED +AE+ E LKE
Sbjct: 28 DELLELDEERRELQTELEELQ--AERNALSKEIGQAKRKGEDAEALIAEVKE--LKEEIK 83
Query: 277 RLEQQLAKEQAAR 289
LE +L + +A
Sbjct: 84 ALEAELDELEAEL 96
|
Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 100.0 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 100.0 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.93 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.87 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.87 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.85 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.83 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.83 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.82 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.82 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.81 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.81 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.8 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.78 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.77 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.76 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.76 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.76 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.76 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.75 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.75 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.75 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.74 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.74 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.73 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.73 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.73 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.73 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.73 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.73 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.73 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.72 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.72 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.72 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.72 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.72 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.71 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.71 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.71 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.71 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.71 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.71 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.71 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.7 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.7 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.7 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.7 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.7 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.69 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.69 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.69 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.69 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.68 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.68 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.68 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.68 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.68 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.68 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.68 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.68 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.68 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.67 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.67 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.67 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.67 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.67 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.67 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.67 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.67 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.67 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.67 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.67 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.67 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.67 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.66 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.66 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.66 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.66 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.66 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.66 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.66 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.66 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.66 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.66 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.66 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.66 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.66 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.66 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.66 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.66 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.66 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.66 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.66 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.66 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.66 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.66 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.66 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.65 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.65 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.65 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.65 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.65 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.65 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.65 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.65 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.65 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.65 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.65 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.65 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.65 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.65 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.65 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.64 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.64 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.64 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.64 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.64 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.64 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.64 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.64 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.64 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.64 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.63 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.63 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.63 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.63 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.63 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.63 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.63 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.63 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.63 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.63 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.63 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.62 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.62 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.62 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.62 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.62 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.62 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.61 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.61 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.61 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.61 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.61 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.61 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.61 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.61 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.61 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.61 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.61 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.6 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.6 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.6 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.6 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.6 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.6 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.6 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.6 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.6 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.6 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.6 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.6 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.59 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.59 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.59 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.59 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.58 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.58 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.58 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.58 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.58 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.58 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.57 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.57 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.57 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.57 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.57 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.56 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.56 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.55 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.55 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.55 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.55 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.55 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.55 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.54 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.54 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.54 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.53 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.53 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.53 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.52 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.52 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.52 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.52 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.52 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.52 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.52 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.52 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.52 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.52 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.52 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.51 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.51 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.51 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.51 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.5 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.5 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.5 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.49 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.49 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.49 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.49 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.48 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.48 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.48 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.48 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.48 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.48 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.47 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.47 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.46 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 99.46 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.45 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.45 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.44 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.44 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.44 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.44 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.44 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.44 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.44 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.43 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.43 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.42 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.42 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.42 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.41 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.41 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.4 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.39 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.39 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.38 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.37 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.35 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.35 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.34 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.34 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.33 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.33 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.32 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.32 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.31 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.3 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.3 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.29 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.29 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.29 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.27 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.27 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.25 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 99.23 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.23 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.22 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.21 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.21 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.21 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.19 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.17 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.16 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.16 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.16 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.16 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.15 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.15 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.14 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.14 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.14 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.13 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.13 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.09 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.09 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.08 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.08 | |
| PRK13768 | 253 | GTPase; Provisional | 99.08 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.07 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.06 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 99.06 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.04 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.03 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.03 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.0 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.99 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.97 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.97 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.96 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.96 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.95 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.95 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.95 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 98.94 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.94 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.93 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.93 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.93 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.92 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.9 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.88 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.87 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.87 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.86 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.85 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.84 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.83 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.83 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.83 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 98.81 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.8 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.8 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.79 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 98.79 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.78 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.78 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.77 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.76 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 98.76 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 98.76 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 98.76 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 98.76 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.75 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 98.75 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 98.75 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.75 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.74 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.74 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 98.74 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.74 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.74 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.74 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.73 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.72 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 98.72 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 98.72 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 98.71 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.71 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 98.71 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 98.7 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 98.7 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 98.7 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.69 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.69 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 98.69 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.69 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.69 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.68 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 98.68 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 98.68 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 98.67 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 98.67 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.67 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 98.67 | |
| PTZ00099 | 176 | rab6; Provisional | 98.66 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 98.66 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.66 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 98.66 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 98.66 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 98.66 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 98.66 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 98.65 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 98.64 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 98.64 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 98.64 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 98.64 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 98.64 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.64 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 98.64 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.63 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 98.63 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 98.63 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 98.63 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 98.63 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.63 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 98.62 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 98.62 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 98.62 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 98.62 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 98.61 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.61 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 98.61 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 98.61 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.6 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 98.6 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 98.6 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 98.6 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 98.6 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.6 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 98.6 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 98.59 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 98.59 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 98.59 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.59 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 98.59 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 98.59 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 98.59 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 98.58 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 98.58 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 98.57 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 98.57 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 98.57 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.57 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 98.56 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.56 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.56 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 98.56 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 98.56 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 98.56 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.55 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 98.55 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 98.55 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 98.55 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 98.55 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 98.55 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 98.55 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 98.55 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 98.55 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 98.54 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 98.54 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 98.54 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 98.54 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 98.54 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 98.53 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 98.53 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.53 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 98.53 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 98.53 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 98.53 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.53 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 98.53 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 98.53 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 98.52 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 98.52 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 98.52 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 98.52 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 98.52 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.52 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 98.51 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 98.51 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 98.51 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 98.51 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 98.51 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.5 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 98.5 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 98.5 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.5 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 98.5 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 98.5 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 98.5 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 98.49 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 98.49 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.49 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 98.49 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 98.49 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 98.49 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 98.49 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.48 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.48 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 98.48 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 98.48 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 98.48 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 98.48 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 98.48 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 98.48 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 98.47 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 98.47 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 98.47 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 98.47 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 98.47 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 98.47 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.46 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 98.46 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.46 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 98.46 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 98.46 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 98.45 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 98.45 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.45 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 98.45 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 98.45 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 98.45 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 98.45 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 98.45 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 98.44 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 98.44 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 98.44 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 98.44 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 98.43 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 98.43 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 98.43 |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=237.35 Aligned_cols=203 Identities=42% Similarity=0.755 Sum_probs=169.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|.+|+||||++|+|+|...|.+.....++|..+..+...+ ++..++|||||||.++.....++..++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888777777888888887766 899999999999999887777888889998888
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
..+++|+|+||++.+ +++..++..++.+..+||..++++++||+|++|.... ..+++++....+.+++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 889999999999999 9999999999999999999999999999999999877 6699998854456789999999999
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE 226 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
|+.|++..........++.+|++.|..++..+++.+|...+++..++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~ 203 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEE 203 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 99999984444556689999999999999999999999988776553
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=224.38 Aligned_cols=195 Identities=51% Similarity=0.860 Sum_probs=172.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|++|+|||||+|+|+|...+.+.....++|..+..+...+ ++..++||||||+++.......+...+..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988776665567788887777777 889999999999999776666677788888877
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+.+++|++++|++++ +++..+...++.++..||..+++++++|+||+|.... ..+++++.. ....++.++..|+++
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 778999999999998 5999999999999999998888899999999999977 789999885 557899999999999
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
|+.|++... ++..+.++.+|++.|++++..+++.+|..++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999987 8888999999999999999999999888764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=177.69 Aligned_cols=178 Identities=21% Similarity=0.313 Sum_probs=143.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|++||++|+|||||+|.|.|... +..++...|+...+..+...+..++.++||||++.+ ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 36899999999999999999999988 557777788888887777667889999999999985 5566788888888
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhc-HHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.++.++|+++||++++..+..++...++.++.. .. |+++++||+|.... .. +..+... +..
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-~~----pvil~iNKID~~~~--~~~l~~~~~~-----~~~------ 142 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKT-KT----PVILVVNKIDKVKP--KTVLLKLIAF-----LKK------ 142 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhc-CC----CeEEEEEccccCCc--HHHHHHHHHH-----HHh------
Confidence 889999999999999977999999999988872 22 89999999998876 33 3333222 221
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 222 (352)
.+.|....+.||.++.++..|++.+...+++ +..+|+.++..
T Consensus 143 --~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~it 184 (298)
T COG1159 143 --LLPFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQIT 184 (298)
T ss_pred --hCCcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhcc
Confidence 1234466788999999999999999999977 45567777644
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=160.95 Aligned_cols=156 Identities=24% Similarity=0.305 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+..+|+|+|.+|+|||||+|+|+|...+...... +.+.......... ++..+.||||||+.+...........+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 45689999999999999999999998764332222 2222222233333 788999999999998643333322223222
Q ss_pred HhcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
+. ..++|+++||.+++ .+++..+...++.+...||..+++++|+|+||+|....++..+++|+.. ..+.++.++..
T Consensus 114 l~--~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~ 190 (313)
T TIGR00991 114 LL--GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHS 190 (313)
T ss_pred hh--cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHH
Confidence 22 24799999997765 4788899999999999999999999999999999875555789999985 77778888775
Q ss_pred cC
Q 018636 176 CD 177 (352)
Q Consensus 176 ~~ 177 (352)
..
T Consensus 191 ~~ 192 (313)
T TIGR00991 191 GA 192 (313)
T ss_pred Hh
Confidence 43
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=171.62 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=123.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|+|+|...+.+... .+.|+.+......+ ++..+.||||||+.+...... ....+...+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~-~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQS-KNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEEEEE-CCceEEEEECCCCCccccchH-HHHHHHHHHH
Confidence 37999999999999999999999987665432 23455554443444 788999999999998754322 2333333332
Q ss_pred c--ccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc-----hhcHHHHhcccCChhHH
Q 018636 99 M--AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-----EKTLEDFLGHECPKPLK 170 (352)
Q Consensus 99 ~--~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-----~~~l~~~l~~~~~~~~~ 170 (352)
. ...++|++|||++++ .+.+.++...++.+..+||..+|+++|||+||+|....+ ...+++|+.. +.+.++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 1 224789999999887 233346788999999999999999999999999998642 2579999985 778899
Q ss_pred HHHHhcCCcEEEEc
Q 018636 171 EILQLCDNRCVLFD 184 (352)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (352)
.++..|.+++..|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999999888777
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=158.67 Aligned_cols=173 Identities=19% Similarity=0.242 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|++|+|||||+|+|+|..... .+..+.|+......+...++..+.++||||+.... ..+...+......+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 79999999999999999999987522 23333344444444444356778999999997642 22334444445556
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+.++|++++|+|++...+. +...+..+.. .+. |+++|+||+|.... ..+.+.+.. +....+
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~~----p~ilV~NK~Dl~~~--~~~~~~~~~--------~~~~~~--- 137 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LKR----PVVLTRNKLDNKFK--DKLLPLIDK--------YAILED--- 137 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHh-cCC----CEEEEEECeeCCCH--HHHHHHHHH--------HHhhcC---
Confidence 6789999999999844443 3444444443 232 89999999998744 333333222 222211
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
+....+.||.++.++++|++.+.+.++. +..+|..++
T Consensus 138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~-~~~~~~~~~ 174 (270)
T TIGR00436 138 --FKDIVPISALTGDNTSFLAAFIEVHLPE-GPFRYPEDY 174 (270)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHhCCC-CCCCCCCcc
Confidence 1234577999999999999999998866 445566554
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=157.84 Aligned_cols=161 Identities=22% Similarity=0.230 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
..|+|||++|+|||||+|.|+|+...-. ....++|++..+....| .+..+.+|||+|+.+.. .+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 5899999999999999999999976333 22334566666777777 78889999999998742 24456777777777
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+...+|+++||+|+...++..|.....+++. .++ |+++|+||+|..... ....+ +...
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~e-~~~~e------------fysl---- 137 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKAE-ELAYE------------FYSL---- 137 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchhh-hhHHH------------HHhc----
Confidence 7789999999999998899999999888883 333 999999999987430 11111 1111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
-|....+.||.++.|+.+|++.+.+.+
T Consensus 138 --G~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 138 --GFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred --CCCCceEeehhhccCHHHHHHHHHhhc
Confidence 133444678999999999999999886
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=139.87 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|.+|+|||||+|+|+|.... .+..+ +.|+......+.+ .+..+.++|+||+++......+ +.+......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~n~p-G~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-VGNWP-GTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-EEEST-TSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-ecCCC-CCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence 48999999999999999999999853 33333 3456665556666 7789999999999876543322 222222221
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
...+|++++|+|++ .+.. +...+..+.++ |. |+++++||+|.....+..++ ...+-...+..
T Consensus 76 -~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~-g~----P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 76 -SEKPDLIIVVVDAT-NLER-NLYLTLQLLEL-GI----PVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp -HTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT-TS----SEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred -hcCCCEEEEECCCC-CHHH-HHHHHHHHHHc-CC----CEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 36799999999998 4432 23333444442 43 99999999998754111111 22222333433
Q ss_pred EEEEcCCCcccccchHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
.+ +.||.++.++++|++.|
T Consensus 138 vi------~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VI------PVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE------EEBTTTTBTHHHHHHHH
T ss_pred EE------EEEeCCCcCHHHHHhhC
Confidence 33 56778889999998865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=149.26 Aligned_cols=132 Identities=28% Similarity=0.350 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~---~~~~~~~~ 93 (352)
....+|+|+|++|+|||||+|+|+|...+.... ..+.|..+..+...+ ++..++||||||+.+.... ...+...+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345899999999999999999999987654432 223455555555555 7889999999999986421 12223333
Q ss_pred HHHHhcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..++. ..++|+++||..++ .+++..+...++.+...||..++.++++|+||+|...+
T Consensus 107 ~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 33332 13689999998777 57888999999999999999999999999999998755
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=152.83 Aligned_cols=177 Identities=20% Similarity=0.310 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|+|+|++|+|||||+|.|+|..... .+....|+......+...++..+.++||||+.+.. ..+.+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 3689999999999999999999987632 23333444444444333245789999999998743 223344444555
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.+...+|++++|+|++..++..+...+..+... + .|+++|+||+|+.... ..+...+.. +. ...+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-~----~pvilVlNKiDl~~~~-~~l~~~~~~-----l~---~~~~- 144 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-K----TPVILVLNKIDLVKDK-EELLPLLEE-----LS---ELMD- 144 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-C----CCEEEEEECCcCCCCH-HHHHHHHHH-----HH---hhCC-
Confidence 566789999999999866777777666666532 2 2899999999998321 344444333 22 2111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
+....+.|+.++.++.+|++.+...++.+ ..+|..++
T Consensus 145 ----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~-~~~y~~~~ 181 (292)
T PRK00089 145 ----FAEIVPISALKGDNVDELLDVIAKYLPEG-PPYYPEDQ 181 (292)
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCCC-CCCCCCCC
Confidence 22334678888999999999999988763 34566554
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=155.36 Aligned_cols=173 Identities=21% Similarity=0.232 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|++|+|||||+|.|+|..... .++...|+ ......+.+ ++.++.+|||||+..... .+...+.+...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~i--vs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSI--VTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceee--ccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 599999999999999999999886522 22222233 222223344 677899999999865321 23344444455
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++.++|++++|+|....++..+..++..+... +. |.++|+||+|+... .+.+. ...+.....
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~----p~IlViNKiDl~~~---~~~~~---------~~~l~~~~~ 189 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NI----VPIFLLNKIDIESK---YLNDI---------KAFLTENHP 189 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CC----CEEEEEEhhcCccc---cHHHH---------HHHHHhcCC
Confidence 556789999999998877777766666666543 22 67889999998633 22222 222222111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
+....++||.++.++++|++.+...++. +..+|+.++
T Consensus 190 ----~~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~ 226 (339)
T PRK15494 190 ----DSLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDD 226 (339)
T ss_pred ----CcEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 1122367899999999999999998876 556677666
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-18 Score=132.43 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=113.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH---HHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVG 90 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~---~~~ 90 (352)
|.+...-|+++|++|+|||||||+|+|... ...+-++ +.|.....+. + +..+.+||.|||+....+.. .+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP-GrTq~iNff~--~--~~~~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTP-GRTQLINFFE--V--DDELRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCC-CccceeEEEE--e--cCcEEEEeCCCcccccCCHHHHHHHH
Confidence 444567999999999999999999999663 2222222 2344333332 2 23377999999998776542 233
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
..+..++... ..+.++++++|+...+...|+..++++... +- |+++|+||+|.... ......+.. +.
T Consensus 95 ~~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~ 161 (200)
T COG0218 95 KLIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VA 161 (200)
T ss_pred HHHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HH
Confidence 4444444433 347889999999988889999999998875 43 89999999999976 444444443 33
Q ss_pred HHHHh-cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 171 EILQL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+.. ..+... ....|+..+.|+++|...|...+..
T Consensus 162 ~~l~~~~~~~~~----~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQW----VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHhcCCCCccce----EEEEecccccCHHHHHHHHHHHhhc
Confidence 22221 122210 1223445567899999988877643
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=151.24 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=126.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..++|+|||++|+|||||+|+|+|+...-..+..| .|.+.-...+.+ +++.+.++||.|+-.-..-.+.+...-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG-TTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG-TTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCC-ccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 35899999999999999999999998744433333 233333334455 8999999999998653221111000000011
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+...++++++|+|++.+++..+...+.++.+. |. +++||+||||....+....+++... +...+...
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l- 323 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFL- 323 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhccc-
Confidence 1233578999999999999999999999988874 54 7999999999986532344444333 44433322
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
-|-...+.||.++.++..|++.+..+........-...+
T Consensus 324 ----~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L 362 (444)
T COG1160 324 ----DFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLL 362 (444)
T ss_pred ----cCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence 234445779999999999999999988765544444433
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=146.05 Aligned_cols=177 Identities=18% Similarity=0.162 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-|+|||.+|||||||||+|++... ..+..+.|+. .....+.+.+...++++||||+.........+...+.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---- 233 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---- 233 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----
Confidence 799999999999999999998764 2344444443 33444444335679999999998654333333444443
Q ss_pred ccCCccEEEEEEecCCCC----C-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 100 AKDGIHAFLVVFSVTNRF----S-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++++++|+|++ .+ . .....++..+......-..+|+++|+||+|+... ..+.+.+.. + ..
T Consensus 234 ~i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~-----l---~~ 302 (390)
T PRK12298 234 HLERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA-----I---VE 302 (390)
T ss_pred HHHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH-----H---HH
Confidence 345789999999986 22 1 2223344444432111112389999999998755 444444333 2 22
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
..+.. ....+.||.++.++.+|++.|...++.. ..+|..++
T Consensus 303 ~~~~~----~~Vi~ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~ 343 (390)
T PRK12298 303 ALGWE----GPVYLISAASGLGVKELCWDLMTFIEEN-PREEAEEA 343 (390)
T ss_pred HhCCC----CCEEEEECCCCcCHHHHHHHHHHHhhhC-cccCCccc
Confidence 21211 0123578888999999999999988763 34455444
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=129.84 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc--ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+|+|++|+|||||+|.|+|... +.. ....+.|.........+..+..+.+|||||... +.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 689999999999999999998532 111 011223444444444442367899999999422 222233
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+.++|++++|+|+++.+.......+..+.. .+. .|+++++||+|+... ..+...... +...+...+.
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 34568999999999985444444444444333 232 289999999998754 333222222 3333332110
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
. .....+.|+.++.+++++++.+..
T Consensus 139 ~---~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 A---DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred C---CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 012235688889999999887653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-17 Score=146.92 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=114.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||+|+|+|..........+ .|.......+.. ++..+.++||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG-TTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC-ceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999987533333322 233333333334 6788999999998764332222111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+...+|++++|+|++.+++..+...+..+... +. |+++++||||+... ....+.... +...+....
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~~----~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-GR----ALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence 2344678999999999988888888777666542 43 89999999999854 334433332 332222211
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+.+..+.||.++.++.++++.+......
T Consensus 318 -----~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 318 -----YAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred -----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2234467899999999999998887654
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=122.76 Aligned_cols=116 Identities=26% Similarity=0.344 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|+|||||+|+|+|......+... ..|.......+.+ ++..+.++||||+.+....... ...+..++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~-~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIP-GTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSST-TSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccc-cceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 6999999999999999999997543333332 2344443333444 7888889999999875432221 12233333333
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
..+|+++||++++...+..+...++.+. .+. |+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~----~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NKK----PIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TTS----EEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cCC----CEEEEEcC
Confidence 6889999999987544455566666663 232 99999997
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=130.13 Aligned_cols=165 Identities=24% Similarity=0.281 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|.+|+|||||+|.|+|....... ....++...........+..+.++||||+....... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc--CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 378999999999999999999998652221 222233222222233245778899999988643221 122333333
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|++++..++......+..+... +. |+++|+||+|+.... ..+.+.+.. +. ....
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~~----~~iiv~nK~Dl~~~~-~~~~~~~~~-----~~---~~~~- 142 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-KT----PVILVLNKIDLVKDK-EDLLPLLEK-----LK---ELGP- 142 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-CC----CEEEEEEchhccccH-HHHHHHHHH-----HH---hccC-
Confidence 445788999999999855555555555555442 22 899999999987321 344433332 22 1111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+......|+.++.++.++++.+.+.
T Consensus 143 ----~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccCCChHHHHHHHHhh
Confidence 1122356777788999999887654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=130.60 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|+|++|||||||+|.|++.... .+...+ .|....+..+.+ .+. .+.++||||+.+.......+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~-~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPF-TTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCc-cccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 5899999999999999999986541 111111 233333333444 444 88999999986432111112222221
Q ss_pred ccCCccEEEEEEecCCC-CCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-
Q 018636 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (352)
.+..+|++++|+|++.. -+... ..++..+..........|+++|+||+|+... ....+.+.. +....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~--------~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKE--------LLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHH--------HHhhCC
Confidence 22468999999999843 12222 2344444443211112489999999998765 333333222 23221
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...+ ...|++++.++.++++.+.+.
T Consensus 145 ~~~~------~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPV------FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCE------EEEecCCCCCHHHHHHHHHhh
Confidence 2222 246788889999999887654
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-17 Score=128.72 Aligned_cols=171 Identities=22% Similarity=0.247 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+++|.+|+|||||+|+|++.......... +.+.......+.. .+..+.+|||||+.+.......+..........
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIA-GTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCC-CCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 68999999999999999999987642222221 1222222222333 567789999999876532111111111111122
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+.++|++++|+|++.+.+......+..+.. .+ .|+++++||+|+.......++.+... +...+.....
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~- 149 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILE-EG----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY- 149 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cC----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC-
Confidence 3468899999999986666655554444332 23 28999999999875411222322222 2222211111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
....+.|++.+.++.++++.+.++
T Consensus 150 ----~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 ----APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----CceEEEeccCCCCHHHHHHHHHHh
Confidence 223356888889999998887654
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=138.43 Aligned_cols=163 Identities=22% Similarity=0.230 Sum_probs=113.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+.+|+++|++|+|||||+|+|++++. +.++..+.|+...+ ..+.+ +|..+.++||.|+-++...-+. .-..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~---iGIe 288 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVER---IGIE 288 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHH---HHHH
Confidence 4568999999999999999999999987 44444444554444 44455 8999999999999875432222 2222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+.....+|.++||+|.+..++..+...+. .... .+|+++|+||.|+... ...... ..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~---~~~~i~v~NK~DL~~~--~~~~~~-------------~~ 347 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE---LLPK---KKPIIVVLNKADLVSK--IELESE-------------KL 347 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---hccc---CCCEEEEEechhcccc--cccchh-------------hc
Confidence 2333446899999999999667888777777 1111 2289999999999876 221111 11
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..+. .....|++++.++..|.+.|...+...
T Consensus 348 ~~~~-----~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 348 ANGD-----AIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCC-----ceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 1111 123568888999999999999988664
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=145.30 Aligned_cols=176 Identities=24% Similarity=0.241 Sum_probs=113.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+++|.+|+|||||+|.|+|..........+ .|.......+.. ++..+.+|||||+.........+........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG-TTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC-ceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34799999999999999999999986432222222 233333333344 6778999999998764322211111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..++..+|++++|+|++++++..+...+..+... +. |+++|+||+|+... ...++++... +...+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-GK----ALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-CC----cEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence 2345688999999999988888887776665542 33 89999999999722 1344443333 333322222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
. ....++||.++.++.++++.+.......
T Consensus 318 ~-----~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 318 F-----APIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred C-----CceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1 2334679999999999999998876553
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=128.05 Aligned_cols=171 Identities=15% Similarity=0.247 Sum_probs=103.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~ 93 (352)
+...+|+|+|.+|+|||||+|.|++.. .....+.. +.|.....+. .+..+.||||||+......... ....+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-GRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-CceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 355799999999999999999999864 21111111 2233322221 2467899999998753322211 11122
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........++++++|++.+.+.+..+...+.++.. .+. |+++++||+|.... ...+..... +...+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~----~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l 164 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YGI----PVLIVLTKADKLKK--GERKKQLKK-----VRKAL 164 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cCC----cEEEEEECcccCCH--HHHHHHHHH-----HHHHH
Confidence 2222222345678888888776666666555555543 232 88999999999865 334333332 33333
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
......+ .++|+.++.++.++++.+.+++.+
T Consensus 165 ~~~~~~~------~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 165 KFGDDEV------ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HhcCCce------EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 2222222 256888899999999999887643
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=127.07 Aligned_cols=163 Identities=22% Similarity=0.181 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~~~ 98 (352)
++|+++|.+|+|||||+|.|++...... .. ...|.........+ .+..+.+|||||+.+...... .+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~-~~-~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~- 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA-PY-PFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL- 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC-CC-CCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHH-
Confidence 3799999999999999999998764211 11 11233333333333 567889999999865322111 1111111111
Q ss_pred cccCCccEEEEEEecCCCCC---HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 99 MAKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....|++++|+|+++..+ .....++..++..+. ..|+++|+||+|.... ..+.. ... +...
T Consensus 77 --~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~~--------~~~~ 140 (168)
T cd01897 77 --AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IEE--------EEEL 140 (168)
T ss_pred --HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HHH--------hhhh
Confidence 123588999999884322 223345555554432 2399999999999755 33332 111 1111
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.... ..++|++++.++.++++.+.+.+
T Consensus 141 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEE------VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCc------eEEEEecccCCHHHHHHHHHHHh
Confidence 1111 23678999999999999887754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=135.38 Aligned_cols=167 Identities=17% Similarity=0.130 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc-ceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||||+|++... . .+..+. |.......+.+.++..++++||||+.+.......+...+.+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~-~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh--- 233 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP-K--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH--- 233 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC-c--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH---
Confidence 689999999999999999998653 1 223333 344444444554567899999999976443333344444333
Q ss_pred ccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHH-HHhcccCChhHHHHHHhcC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~ 177 (352)
+..++++++|+|+++.-+..+. .+...+......-..+|+++|+||+|+... .... +... ......+
T Consensus 234 -ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~~~--------~~~~~~~ 302 (335)
T PRK12299 234 -IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKRAA--------LELAALG 302 (335)
T ss_pred -hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHHHH--------HHHHhcC
Confidence 3578999999999833233333 333444432111123489999999998754 3222 1111 1122222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+ .++||.++.++.+|++.+.+.+..
T Consensus 303 ~~i------~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 303 GPV------FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCE------EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 222 356888899999999999887754
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=127.40 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred EEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccC
Q 018636 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (352)
Q Consensus 23 ~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (352)
+|+|.+|+|||||+|.|++........ ..+.|.........+ .+..+.++||||+.+... .+...+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999875322212 122343444444444 678899999999987432 223333333334456
Q ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEE
Q 018636 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (352)
Q Consensus 103 ~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (352)
++|++++|++....++..+...+.++... + .|+++|+||+|.... ..... .+...+.
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~~------------~~~~~~~---- 132 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEAA------------EFYSLGF---- 132 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHHH------------HHHhcCC----
Confidence 78999999999866666666555655542 3 289999999998765 22211 1111121
Q ss_pred EcCCCcccccchHHHHHHHHHHHHH
Q 018636 183 FDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 183 ~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
......|+.++.++.++++.+.+.
T Consensus 133 -~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 133 -GEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -CCeEEEecccCCCHHHHHHHHHhh
Confidence 122356788889999999987653
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=143.32 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=110.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~- 96 (352)
...+|+|+|++|+|||||+|.|+|.......+..+ .|.......+.+ ++..+.+|||||+......... .+.+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g-tT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~-~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG-TTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASG-HEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-ccCCcceEEEEE-CCEEEEEEECCCccccccccch-HHHHHHHH
Confidence 34899999999999999999999986422222222 233333333444 6788899999998542211110 1111111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++.++|++++|+|++++.+..+...+..+.. .+. |+++|+||+|+... ......... +...+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~~----piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AGR----ALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECcccCCh--hHHHHHHHH-----HHHhcccC
Confidence 1123468999999999998888887776665544 232 89999999999754 222111111 21111111
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~ 214 (352)
. +.+...+||+++.++.+|++.+.+.+......
T Consensus 355 ~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 355 P-----WAPRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred C-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 1 11223579999999999999999888764433
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=131.27 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEee--------------------------CC----
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK--------------------------DG---- 68 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------~~---- 68 (352)
.+|+++|++|+|||||+.+|++.. .........+.+..+.+..+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999998762 21111222223333333322221 02
Q ss_pred --ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 69 --QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 69 --~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
..+.+|||||. ..+...+..+...+|++++|+|++.. ........+..+.. .+. .|+++++|
T Consensus 81 ~~~~i~~iDtPG~-----------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGH-----------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCCh-----------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 67899999993 22333444444678999999999842 33333444444433 232 27899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+|+... ..+...+.. +...+..... ......+.|+.++.++.+|++.+.+.++.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIA---ENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhcccc---CCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9999764 444433333 4433332110 01123467889999999999998876643
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=127.68 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=95.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
....+|+|+|.+|+|||||+|.|++.. .....+. .+.|..+..+. . + ..+.+|||||+......... ...+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~--~-~-~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT-PGRTQLINFFE--V-N-DGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCcceEEEEEE--e-C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence 456899999999999999999999875 2111111 12233333322 2 2 46889999998765432221 122221
Q ss_pred HH---hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CL---GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~---~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.+ ......++++++|+|++.+++..+...+..+.. .+. |+++++||+|.... ...+..+.. ++..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-~~~----pviiv~nK~D~~~~--~~~~~~~~~-----i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-RGI----PVLIVLTKADKLKK--SELNKQLKK-----IKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECcccCCH--HHHHHHHHH-----HHHH
Confidence 11 112245789999999987788888877666654 233 89999999999755 444444443 4444
Q ss_pred HHhcCCcEEEEcCCCcccccchHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQV 197 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~ 197 (352)
+...+.. ....++||+++.|+
T Consensus 158 l~~~~~~----~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 158 LKKDADD----PSVQLFSSLKKTGI 178 (179)
T ss_pred HhhccCC----CceEEEECCCCCCC
Confidence 4432211 02234566665553
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=139.53 Aligned_cols=162 Identities=22% Similarity=0.170 Sum_probs=101.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|+|+|...+.. .....|.+.....+.+.++..+.++||||+.... + ..+.+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~-~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-P-HELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC-C-HHHHHHHHHHH
Confidence 347999999999999999999999864221 1122344444445555467889999999984321 1 12233343322
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|++++.+..+.. +...+..+ +. ...|+++|+||+|+... ..+.. + ..
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~---------~---~~-- 324 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER---------L---EE-- 324 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH---------H---Hh--
Confidence 2346889999999998555444432 23344433 21 12389999999998754 22211 1 00
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.. .....+||+++.++.+|++.|.+.
T Consensus 325 ~~-----~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 GY-----PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CC-----CCEEEEEccCCCCHHHHHHHHHhh
Confidence 10 112357889999999999988654
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=124.32 Aligned_cols=156 Identities=23% Similarity=0.247 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+++|++|+|||||+|.|++......... .+.+.......+.+ .+..+.++||||+.+..... .........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEI---EKIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEe-CCEEEEEEECCCcCCCcchH---HHHHHHHHH
Confidence 36899999999999999999998764222222 12233333333344 57788999999987753221 111111222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|+|++.+.+..+...+.. ..+. |+++|+||+|.... ... .....+.
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~----~vi~v~nK~D~~~~--~~~--------------~~~~~~~ 132 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL---PADK----PIIVVLNKSDLLPD--SEL--------------LSLLAGK 132 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh---hcCC----CEEEEEEchhcCCc--ccc--------------ccccCCC
Confidence 33458899999999996666655554443 2232 89999999998865 221 0011122
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.++ ..|+.++.++.+|++.|...+
T Consensus 133 ~~~------~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 PII------AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ceE------EEECCCCCCHHHHHHHHHHhh
Confidence 232 457778899999999887653
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=131.37 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc----------------cCCCCCcceeeEeEEEE-eeCCceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----------------SAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~-~~~~~~~~lvDtpG~~~ 81 (352)
.++|+++|+.|+|||||++.|++...... .......|.......+. ...+..++++||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 47999999999999999999985442100 00112344444444444 12788999999999432
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
+......+...+|++++|+|+...+.......+..+... +. |+++++||+|.. . ..+.+.+
T Consensus 83 -----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~-~--~~~~~~~ 143 (188)
T PF00009_consen 83 -----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI-E--KELEEII 143 (188)
T ss_dssp -----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS-H--HHHHHHH
T ss_pred -----------eeecccceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch-h--hhHHHHH
Confidence 222233334578999999999878888888888887664 43 899999999998 3 4555555
Q ss_pred cccCChhHH-HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ +. .++...+..-..+-+..+.|+.++.++.+|++.+.+.++
T Consensus 144 ~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 EE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 54 44 344433221000011236788899999999999988764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=130.17 Aligned_cols=162 Identities=24% Similarity=0.209 Sum_probs=97.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|||||||+|.|++....... ....|.......+.+.+...+.+|||||+.+... ......+...+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~- 115 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL- 115 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH-
Confidence 479999999999999999999987642211 1122333333344443344889999999865321 11222232222
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|++.+.+.... .+...+....... .|+++|+||+|+... .... . ......
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~~~ 179 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEAGR 179 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------HhhcCC
Confidence 234578999999999855444333 3334444332222 389999999999765 2222 1 111111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.. ....|+.++.++.++++.+...
T Consensus 180 ~~------~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 180 PD------AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred Cc------eEEEEcCCCCCHHHHHHHHHhh
Confidence 12 2356888899999999887653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=145.23 Aligned_cols=164 Identities=22% Similarity=0.208 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|||++|+|||||+|.|+|......... .++|.........+ .+..+.+|||||+... ...+...+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDV-PGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCC-CCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 346899999999999999999998764222222 23455544444555 6788999999998632 122334455445
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..++..+|++++|+|++++.+..+..+..++.. .+ .|+++|+||+|+... ... ....... +
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-~~----~piilV~NK~Dl~~~--~~~-----------~~~~~~~-g 172 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRR-SG----KPVILAANKVDDERG--EAD-----------AAALWSL-G 172 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCcc--chh-----------hHHHHhc-C
Confidence 556678999999999997777777666666654 23 299999999998643 110 1111111 1
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++||.++.++.+|++.+...+..
T Consensus 173 -----~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 -----LGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred -----CCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1111357899999999999998876643
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=135.83 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||+|.|++.... ....+ .|.......+.+.++..+.++||||+.+.......+...+.+.
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~---va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh--- 232 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK---IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH--- 232 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc---ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH---
Confidence 6899999999999999999986531 22222 2334444445553348899999999976433322334444333
Q ss_pred ccCCccEEEEEEecCCC---CCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 100 AKDGIHAFLVVFSVTNR---FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++++++|+|++.. -...+. .+...+......-..+|++||+||+|+... ..+++..+. +...
T Consensus 233 -ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~--------l~~~ 301 (329)
T TIGR02729 233 -IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKE--------LKKA 301 (329)
T ss_pred -HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHH--------HHHH
Confidence 3478999999998832 111222 233333332111123489999999999765 444433332 2222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..+ .++||.++.++.+|++.+.+.+
T Consensus 302 ~~~~v------i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPV------FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcE------EEEEccCCcCHHHHHHHHHHHh
Confidence 22222 3568888999999999987764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=145.31 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|||++|+|||||+|.|+|........ ..++|.........+ .+..+.+|||||+... ...+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 48999999999999999999876422212 233455555555666 7888999999998642 233445555555566
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+..+|++++|+|+..+++..+.....++... +. |+++|+||+|.... ... ..++.. .+
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~~----piilVvNK~D~~~~--~~~-----------~~~~~~-lg--- 133 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-GK----PVILVANKIDGKKE--DAV-----------AAEFYS-LG--- 133 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-CC----CEEEEEECccCCcc--ccc-----------HHHHHh-cC---
Confidence 6789999999999877888888777777653 43 89999999998754 211 111111 11
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+......||.++.++.+|++.+...+..
T Consensus 134 --~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 134 --FGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred --CCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 1223356888899999999998877643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.6e-16 Score=138.65 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||||.|++.... .+..+.|+ ......+.+ .+..++|+||||+.........+...+.+
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr---- 232 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR---- 232 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH----
Confidence 7999999999999999999987541 22233333 333444444 66789999999997643222233333333
Q ss_pred ccCCccEEEEEEecCCC----CCHHHHH-HHHHHHHhhc---------ccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 100 AKDGIHAFLVVFSVTNR----FSQEEET-AVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~----~~~~~~~-~l~~~~~~~~---------~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
.+..++++++|+|++.. -...+.. +...+..... .-..+|.+||+||+|+... ..+.+.+..
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~~-- 308 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVRP-- 308 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHHH--
Confidence 33578999999998721 0111222 2222322211 1123499999999998754 333333221
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+...+..+ .++|+.++.++.+|+..+.+++..
T Consensus 309 ------~l~~~g~~V------f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 309 ------ELEARGWPV------FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ------HHHHcCCeE------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 222222222 356888899999999999888765
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=130.13 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=111.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|.|+|.+|+|||||||+|++....+. +.-++++....+.....++..+++|||||+++....+.+....+...+
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l- 115 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL- 115 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh-
Confidence 36888999999999999999996554222 212222222222222337788999999999997666655444444443
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc----------chhcHHHHhcccCChh
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----------HEKTLEDFLGHECPKP 168 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~----------~~~~l~~~l~~~~~~~ 168 (352)
+..|.++++++++++.-+.+..+++-+...... +++++++|.+|...+ +...+.+++.. .-..
T Consensus 116 ---~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~~ 188 (296)
T COG3596 116 ---PKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAEA 188 (296)
T ss_pred ---hhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHHH
Confidence 577899999999867666666666666554442 289999999997644 12233444433 1111
Q ss_pred HHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+.+++.. ..+++..+....-++..|+..+...++..
T Consensus 189 ~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 189 LGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 2223322 33333445566788999999888887753
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=126.59 Aligned_cols=164 Identities=21% Similarity=0.204 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCC--------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
+|+|+|.+|+|||||+|.|++......... ..+.+.........+ .+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999988754221100 011233333333334 4678899999996541
Q ss_pred HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC
Q 018636 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~ 166 (352)
.. ....++..+|++++|+|+....+......+..+.. .+ .|+++++||+|.... ..+......
T Consensus 76 ---~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 ---SS----EVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ---HH----HHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch--hcHHHHHHH---
Confidence 11 12223347899999999986666655555555543 22 289999999999864 344333332
Q ss_pred hhHHHHHHhcCC-----cE---EEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDN-----RC---VLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 167 ~~~~~~~~~~~~-----~~---~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+...+...+. ++ ....+..+.|+.++.++.++++.+...+
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 3333332211 00 0112334678889999999999887765
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-16 Score=142.70 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|++|+|||||+|.|+|........ ..++|.........+ ++..+.+|||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 479999999999999999999876422222 223454555555555 67889999999998622 1234445444555
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
++..+|++++|+|++++++..+.....++... +. |+++|+||+|..... ....+ +.. .+
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~~----piilv~NK~D~~~~~-~~~~~------------~~~-lg-- 135 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-NK----PVILVVNKVDGPDEE-ADAYE------------FYS-LG-- 135 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCccch-hhHHH------------HHh-cC--
Confidence 56789999999999877888877777777654 33 899999999965320 11111 111 11
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+....+.|+.++.++.+|++.+..
T Consensus 136 ---~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 136 ---LGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ---CCCCEEEEeeCCCCHHHHHHHHHh
Confidence 112335688889999999988876
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=136.14 Aligned_cols=165 Identities=19% Similarity=0.156 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc-ceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||||+|++...- ....+. |.......+.+.++..++++||||+.........+...+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k---Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh--- 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK---IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH--- 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc---cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH---
Confidence 8999999999999999999987631 122222 334444445553478899999999976332222333443333
Q ss_pred ccCCccEEEEEEecCCC---CCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 100 AKDGIHAFLVVFSVTNR---FSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++++++|+|+++. -... ...+...+......-..+|.+||+||+|+... ...++ .+...
T Consensus 234 -ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~------------~l~~~ 299 (424)
T PRK12297 234 -IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLE------------EFKEK 299 (424)
T ss_pred -HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHH------------HHHHH
Confidence 3478999999999721 1112 22344444443221123499999999997432 11122 12222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
.+..+ .++||.++.++.+|++.+.+.+...
T Consensus 300 l~~~i------~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 300 LGPKV------FPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred hCCcE------EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 22222 3568888999999999999888653
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.8e-16 Score=124.65 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-CCC--cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|++|+|||||+|+|+|......+.. .+. .+.... .+.......+++|||||+.+....... +...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDD----YLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence 5899999999999999999999654221111 111 111111 111112457899999999875433222 2221
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchh-------cHHHHhcccCChhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~-------~l~~~l~~~~~~~~ 169 (352)
..+.+.|++++|.+ .+++..+..++..+... +. ++++|+||+|....... ..++++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 23457888888753 47899999998888775 54 89999999998643110 12233332 11123
Q ss_pred HHHHHh---cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+.. ....++..+.... .+.++..|.+.+...++.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhH
Confidence 333332 2234555443321 246777777777666654
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=125.82 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc--CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+|+|+|++|+|||||+|.|++......+ ......|.......+.+ ++..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999875321000 11112233333344444 678899999999643 111222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+.++|++++|+|+++.-+. .....++..++.. ....|+++++||+|.... ...++.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 345688999999998732111 1111222222211 112399999999998654 322221111 11111111
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
+... ....+.|++++.++.++++++.
T Consensus 140 ~~~~---~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRD---CLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCc---eEEEEeeCCCCcCHHHHHHHHh
Confidence 1111 0223678899999999998874
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=123.27 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+|+|.+|+|||||+|.|++..... ....+.|........... .+..+.++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 69999999999999999999765411 112233444333444432 367889999999533 111122
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-HhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ 177 (352)
..+..+|++++|+|+++.........+..+.. .+. |+++|+||+|+.......+...+.. +.... ...+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~~----p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 138 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-ANV----PFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEWG 138 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cCC----CEEEEEEceecccccHHHHHHHHHH-----hhcccccccc
Confidence 23467899999999985555555555555443 232 8999999999874411122222221 11000 0111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+ ...+.|+.++.++.+|++.+....
T Consensus 139 ~~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 139 GDV----QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcC----cEEEeecccCCCHHHHHHHHHHhh
Confidence 111 223668888999999999887764
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=119.66 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|..|+|||||++.+.+..... ....+.........+.+ ++ ..+.++||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE--RQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc--cCCCccceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHH
Confidence 4799999999999999999998654311 11111222233333444 33 367899999932 22223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|+++.-+-.. ..++..+........ |+++|.||+|+........++ ...+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNV--VLLLIGNKCDLEEQREVLFEE---------ACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC--cEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3334568899999999984333222 345555544322223 899999999986441111111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+...+ .++|++++.++.++++.+.+
T Consensus 138 ~~~~~~-----~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAV-----LETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEE-----EEEECCCCCCHHHHHHHHHH
Confidence 222122 25788889999999998765
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=124.05 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=91.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|++|+|||||++.|++.... ....|.......+.+ ++..+.+|||||... +...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 74 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPY 74 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 44589999999999999999999987431 111222222333344 567889999999532 1222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+|++++-+-.+ ...+..+ ...... ..|+++|.||+|+... ...++ +...+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~--~~~~~---------~~~~~~ 141 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGA--LSEEE---------IREALE 141 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccC--CCHHH---------HHHHhC
Confidence 2334568999999999984322211 1222222 111111 2399999999998654 22221 111221
Q ss_pred hc---CCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 175 LC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 175 ~~---~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.. ...+ ....+||.++.++.++++++.
T Consensus 142 ~~~~~~~~~----~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 142 LDKISSHHW----RIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCCCce----EEEeccCCCCcCHHHHHHHHh
Confidence 10 1111 123678899999999998764
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=124.19 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=96.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK- 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~- 95 (352)
....+|+++|.+|+|||||+|.|+|... .....+ ++|.... .+.+ + .+.+|||||++..........+.+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~-~~t~~~~--~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRP-GVTRKPN--HYDW--G-DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCC-ceeeCce--EEee--c-ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3457999999999999999999998763 222222 2232221 2222 2 68899999986544332222223322
Q ss_pred ---HHhcccCCccEEEEEEecCCCCC-----------HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 96 ---CLGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 96 ---~~~~~~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
++......++++++|+|.+.... ..+...+..+.. .+ .|+++|+||+|+... . .+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~--~~~~ 150 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LG----IPPIVAVNKMDKIKN--R--DEVL 150 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cC----CCeEEEEECccccCc--H--HHHH
Confidence 22223346789999998862111 122233333332 22 289999999998654 2 1111
Q ss_pred cccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +...+... ..+..+ ....++||.++ +++++++.+.+.+..
T Consensus 151 ~~-----~~~~~~~~-~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 DE-----IAERLGLY-PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HH-----HHHHhcCC-ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11 22112110 011001 12346799999 999999999887654
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=145.06 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~- 96 (352)
...+|+|+|++|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+.......+ ..+....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~-gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~--~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA-GTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLT--GAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC-CCCcCcceeEEEE-CCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence 3479999999999999999999998642221222 2233332333344 778889999999864322211 1111111
Q ss_pred -HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 -LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 -~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++..+|++++|+|++.+.+..+...+..+... +. |+++|+||||+... ...+.+... +...+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~~----piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~ 592 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-GR----ALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR 592 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence 12345789999999999988888887766655432 32 89999999999754 222211111 2111111
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
. .+....+.||+++.++.+|++.+.+......
T Consensus 593 ~-----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 593 V-----TWARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred C-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 1 1122345799999999999999999876533
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=129.91 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC------CCCcceeeEeEEEEe-eCC--ceEEEEeCCCCCCCCCCcHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFV 89 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~lvDtpG~~~~~~~~~~~ 89 (352)
..+|+|+|.+|+|||||+|+|++......... ....|.........+ .++ ..++|||||||++.... ...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence 47999999999999999999998876433211 112233232222222 134 36899999999886432 222
Q ss_pred HHHHHHHH------------------hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 90 GKEIVKCL------------------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 90 ~~~~~~~~------------------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
...+..++ ......+|+++|+++.+ .+++..+...++.+.. .+ |+++|+||+|..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~v--~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----RV--NIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----cC--CEEEEEECCCcC
Confidence 23222211 01123589999999887 4677777777776653 22 899999999998
Q ss_pred CcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcC
Q 018636 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (352)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352)
.. ..+..+... +.+.+...+..++.|..
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPE 184 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCC
Confidence 66 566655555 77777777777776654
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=122.51 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..+|+++|+.++|||||+++|++...... .....+.|.......+.+ .+..++++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~---- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA---- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHH----
Confidence 47899999999999999999986411000 001223344444444444 67789999999953
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+......+...+|++++|+|+...+...+...+..+... +.. ++++++||+|+...
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~ 133 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD 133 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence 2333334444688999999999877778777777776653 431 47788999998744
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=120.93 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=92.6
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
|+++|..|+|||||++.+.+... ......|.......+.. .+..+.+|||||.... .......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~----~~~~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS----LESVVPTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC----cccccccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 79999999999999999997643 11111222222222233 4667899999995432 11122345
Q ss_pred CCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
.++|++++|+|.+++.+-. .+.++..+... ....|+++|.||.|+... ....+..... .+..+....+..+
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~--~~~~~i~~~~---~~~~~~~~~~~~~ 137 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAA--RSVQEIHKEL---ELEPIARGRRWIL 137 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCC--CCHHHHHHHh---CChhhcCCCceEE
Confidence 6889999999988433211 12222222211 123399999999998755 3333322110 0122222223333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
+..+.....|+.++.++.++++.+.
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHh
Confidence 3334555678888999999988654
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=124.21 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=92.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+..+|+|+|++|+|||||++.|.|.......+ |.......+.+ ++..+.++||||... +....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~-----t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITP-----TQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCC-----CCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 45899999999999999999999875411112 22222233344 577889999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|+++.-+-.. ...+..+..... ....|+++++||+|.... ...+++... ++ +. ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~~-~~ 145 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEA-----LN-LH-DL 145 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHH-----cC-Cc-cc
Confidence 334468899999999873211111 112211111110 112389999999998754 333333222 11 00 01
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+.. ...+.||+++.++.++++++.+
T Consensus 146 ~~~~~---~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 146 RDRTW---HIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCeE---EEEEeECCCCCCHHHHHHHHhc
Confidence 11111 1136789999999999998753
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=122.54 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|..|+|||||++.+.+... .. ...|.......+.+ .+..+.++||||.... .......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~----~~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF----MQ-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC----CC-cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 589999999999999999998643 11 22233333333444 6778899999996432 1112223
Q ss_pred cCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh-cCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 178 (352)
+.++|++++|+|++++-+-.+ ..++..+..... ....|++|+.||.|+... ...++.... + .+... +..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~-~~~~~~~~~ 134 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEMTEL-----L-SLHKLCCGR 134 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHHHHH-----h-CCccccCCC
Confidence 468899999999983322111 122222221111 011389999999998644 222222111 0 01111 111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+.+ ..+||+++.++.++++++.+.+..
T Consensus 135 ~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 135 SWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred cEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1222 256899999999999999876544
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=124.30 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC---cccccC--CCCCcceeeEeEEEEee-------------CCceEEEEeCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK---AFKASA--GSSGVTKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 81 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~---~~~~~~--~~~~~t~~~~~~~~~~~-------------~~~~~~lvDtpG~~~ 81 (352)
.+|+++|+.|+|||||++.|++.. .+.... ...+.|.......+.+. .+..+++|||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999998731 110000 01123333333333331 256889999999632
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
+..........+|++++|+|+....+..+...+.... ..+. |+++++||+|.... ...+..+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~~----~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILCK----KLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcCC----CEEEEEECcccCCH--HHHHHHH
Confidence 2222222335689999999998555555544444332 2343 89999999998754 3333333
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. ....+...+...+.. .-...+.|+.++.++.+|++.+...+.
T Consensus 143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 32 000122222111110 012346789999999999999887664
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=126.52 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc-----------------------------CCCCCcceeeEeEEEEeeCCceE
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (352)
+|+|+|+.|+|||||++.|++....... ....+.|.......+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999754321110 00022344444444455 68889
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
.++||||+.+ +...+..+...+|++++|+|++..+.......+.++.. ++.. ++++|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence 9999999532 22222233468899999999986666555554444433 3421 5788899999875
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
.....+...... ++.++...+... ....+.||.++.++.+.
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~---~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIED---ITFIPISALDGDNVVSR 185 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCC---ceEEEEeCCCCCCCccC
Confidence 322333334443 555555544221 11235677777777643
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=119.22 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||+|.+++.... .....|.... .....+ ++ ..+.+|||||.... .. .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~---l 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SA---M 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc----CCcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--------HH---H
Confidence 58999999999999999999976531 1111122111 122223 33 34678999995431 11 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.+++++++|++++++-+-.+. .++..+..... ....|+++|.||+|+... ....+. ...+...
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~ 134 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKS 134 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--eecHHH--------HHHHHHH
Confidence 22234578999999998833222222 23333433321 112389999999998754 211111 1222222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+..++ ++|++++.++.++++.+.+.
T Consensus 135 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 135 YGIPYI------ETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred hCCeEE------EecCCCCCCHHHHHHHHHHH
Confidence 233332 46888899999999887654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=136.77 Aligned_cols=158 Identities=23% Similarity=0.271 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+.+|+|+|.+|+|||||+|.|+|.......... +.|.......+.+ ++..+.++||||+.+.. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIA-GTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 3479999999999999999999987642222222 2233333334444 77889999999987532 11111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|++++.+..+...+.. ..+ .|+++|+||+|+... .... ....
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~~~----~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE---LKD----KPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh---cCC----CCcEEEEEhhhcccc--chhh---------------hccC
Confidence 234568899999999986666554443332 112 289999999998754 1111 0001
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. ....|++++.++.+|++.+.+.+..
T Consensus 345 ~~------~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KP------VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred Cc------eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 11 2356888999999999999988754
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=123.47 Aligned_cols=162 Identities=20% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccC
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (352)
|+|++|+|||||+|+|+|... ..... ...|.......+.+ . +..+.++||||+.........+...+. ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~-~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANY-PFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCC-CceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 589999999999999998864 11111 12233333344445 5 888999999998653222111122222 2234
Q ss_pred CccEEEEEEecCCCC-----C-HHHH-HHHHHHHHhhcc-----cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 103 GIHAFLVVFSVTNRF-----S-QEEE-TAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 103 ~~~~~l~v~~~~~~~-----~-~~~~-~~l~~~~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
++|++++|+|++... . ..+. .+...+...... ....|+++|+||+|+... ..+..... .
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~-------~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELV-------R 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHH-------H
Confidence 789999999998432 2 2222 222222221110 012399999999999765 33332210 0
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.........+ ..+|+.++.++.++++.+..+
T Consensus 145 ~~~~~~~~~~------~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEV------VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCE------EEEehhhhcCHHHHHHHHHhh
Confidence 1111112222 356888899999999877543
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.7e-16 Score=121.86 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|..|+|||||++.|.+...... ..|.......+.. .+..+.+|||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc-----cCCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999976543111 1122222223333 567789999999532 222233
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHHh
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+.++|++++|+|+++..+-.+ ...++...+... ...|++||.||+|+... ..+.+.+++.. -..
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~~ 140 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TRI 140 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Ccc
Confidence 45578999999999984322211 122222222110 11389999999998643 11222222211 000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
....+. ..++||+++.++.+++++|.
T Consensus 141 ~~~~~~----~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWY----VQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCcEE----EEEeeCCCCCChHHHHHHHh
Confidence 011121 12578999999999998874
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=119.53 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE--EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++... . .....+.....+ .... ++ ..+.+|||||... +..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-E---PQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQER-----------FQT 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C---CCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 4799999999999999999986653 1 111112222222 2222 33 3567999999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++.+..+ ..++..+..... . .|+++|+||+|+... . ..+ ...+..
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~--~-~~~---------~~~~~~ 129 (161)
T cd04124 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS--V-TQK---------KFNFAE 129 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh--H-HHH---------HHHHHH
Confidence 33345578999999999984444333 345555554322 2 399999999997432 1 111 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|++++.++.++++.+.+.+.
T Consensus 130 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 130 KHNLPLY------YVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222 4688889999999998876553
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-15 Score=133.62 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=110.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~ 96 (352)
..+|+++|.+|+|||||+|.|+|...... ..+ ++|+......+.. .+..+.++|.||.++..... +.+.+++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg-Nwp-GvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG-NWP-GVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL-- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec-CCC-CeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence 36799999999999999999999886333 233 3566666666666 78889999999999865433 33333322
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
. ...+|+++-|+|++ .+...-.-.+.++. +|. |+++++|++|.....+-.++ ...+-+..
T Consensus 78 -l--~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~L 137 (653)
T COG0370 78 -L--EGKPDLIVNVVDAT-NLERNLYLTLQLLE--LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLL 137 (653)
T ss_pred -h--cCCCCEEEEEcccc-hHHHHHHHHHHHHH--cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHh
Confidence 2 35789999999998 44333322333222 344 89999999998755111111 22333333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
+-..+ +++|..+.|+++|++.+.+..+....
T Consensus 138 GvPVv------~tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 138 GVPVV------PTVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred CCCEE------EEEeecCCCHHHHHHHHHHhcccccc
Confidence 44443 56788899999999999888765443
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=120.89 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|..|+|||||++.+....... ...|....+..+.. .+..+.++||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999996333211 11233222333333 567789999999543 222223
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+.++|++++|+|++++-+-.+ ...++..++... ...|++||.||.|+... ...+++... +. + ...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-HSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-ccc
Confidence 34578999999999983322111 112222222111 12389999999998644 222222111 10 0 011
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+.+. ..++||+++.++.+++++|.+.+
T Consensus 145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWY---IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence 122221 12468899999999999887653
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-15 Score=117.98 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=95.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH---HHHHHHHHHHh
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGKEIVKCLG 98 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~---~~~~~~~~~~~ 98 (352)
|+|+|.+|+|||||+|.|++...........+.|... ..+. ....++++||||+........ .....+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI--NFFN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE--EEEE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 8999999999999999999543311111111122222 2222 233888999999887543221 1112122222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH-hcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 177 (352)
.....++.++++++.+...+..+...+.++... +. |+++++||+|.... ......... ....+. ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~~----~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-GI----PFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-CC----CEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233467888999988755556656666665543 32 89999999999755 333333222 333332 112
Q ss_pred -CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 -~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..++ +.|+.++.++.++++.+.+.
T Consensus 145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPII------LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceE------EEecCCCCCHHHHHHHHHHh
Confidence 2222 56777888999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-15 Score=120.90 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+++|..|+|||||++.+..... .. ....+++.......+.+ ++ ..+.+|||+|.. .+.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe-----------~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CE-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQE-----------RFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCch-----------hhHHHHH
Confidence 689999999999999999986543 11 11111222222233444 44 456899999943 2333334
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (352)
.++.++|++++|+|++++-+-... .++..+........ |++||.||+|+... ..+.... ...+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~--piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA--ELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence 456799999999999854443332 34444444333333 89999999998643 2111100 11122221
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ .+||+++.++.+++..+.+.+
T Consensus 137 ~~~~~------etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 137 GMRFC------EASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 22222 568889999999998775543
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=119.96 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++... .. ....|+ ......+.+ ++ ..+.+|||||........ ..+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~---~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PE---EYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTA---GQEWMD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Cc---ccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccc---hhHHHH
Confidence 3799999999999999999997654 11 112222 111122333 44 356799999976432111 122222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhc-ccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|++++.+-.. ..++..+..... .....|+++|.||+|+... ...... ..+.+.
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~ 143 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLV 143 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHH
Confidence 22334578999999999984433322 223334443321 0112399999999999643 111100 022222
Q ss_pred H-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 018636 174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (352)
Q Consensus 174 ~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~ 214 (352)
. ..+..++ ++||+++.++.+|++.+.+.+-.++..
T Consensus 144 ~~~~~~~~~------e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 144 RKSWKCGYL------ECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred HHhcCCcEE------EecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 2 1122222 578889999999999888776554443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=126.13 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|.|.+|+|||||++.|++... ...+++.|+. ..+.++.. .+..+.+|||||+.|-.... ...+...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E---rN~IE~q 239 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE---RNEIERQ 239 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH---hcHHHHH
Confidence 447999999999999999999998764 2445565554 45555555 77799999999998854322 2223222
Q ss_pred Hhccc-CCccEEEEEEecC--CCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 97 LGMAK-DGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 97 ~~~~~-~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
.-.+. .-.++++|++|++ +.++-++ ..+++.++..|.. |+++|+||+|..+. +.+++
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~--e~~~~ 300 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE--EKLEE 300 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch--hHHHH
Confidence 22222 2347899999998 6677554 4677888888884 89999999999866 55544
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=120.06 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|..|+|||||++.+........ ..|.......+.. ....+.+|||||... +.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 799999999999999999964433111 1122222222333 567789999999532 22223345
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+.++|++++|+|++++-+-.+ ...++..++... ...|++|+.||.|+... ...++.... +. + .....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----LG-L-HSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence 678999999999983322111 112222222111 11389999999998644 222222111 10 0 00011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
+... ..+.||+++.|++++++++.
T Consensus 134 ~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 1111 23568899999999998764
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-13 Score=123.75 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=78.3
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..++++||||+..... ..+.+.+.. ....+|+++||+|+...++..+...++.+... ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4678999999986432 123333333 34688999999999866788888888777664 321 28999999999
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+......+..... +...+..... .|..+.++||..+.++..|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 875311122222221 2222222111 2445567899999999999998765
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=118.78 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|..|+|||||++.+.+... .. ....+.+.......+.. ++ ..+.+|||+|... +...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ES-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 37999999999999999999986543 11 11111222222222333 34 4567899999432 2333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++.+-... .++..+..... .+ |++||.||.|+........+ . ...+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~--piilVGNK~DL~~~~~v~~~-~--------~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GV--PKILVGNRLHLAFKRQVATE-Q--------AQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccchhccCCCHH-H--------HHHHHHH
Confidence 33455799999999999855443333 45555654432 33 99999999998643001111 1 2233334
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
.+..++ .+||.++.+++++++.+.+.+...
T Consensus 140 ~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 140 NGMTFF------EVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence 344443 568889999999999998766543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=120.48 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|..|+|||||++.|........ ..|.......+.+ .+..+.+|||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 589999999999999999976554211 1122222333334 567889999999643 12222334
Q ss_pred cCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+.+++++++|+|++++-+.. ...+...+..... ...|+++|+||+|+... ....+.... +. . .....
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-----LG-L-SELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence 46899999999988322111 1222222221110 12399999999998754 222221111 10 0 00011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
... ...++|+.++.++.++++.+.+
T Consensus 133 ~~~---~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 133 RTW---SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CcE---EEEEeeccCCCCHHHHHHHHhc
Confidence 111 1246788999999999988743
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-15 Score=117.48 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++... .... ..+.........+.+ ++ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF-NPSF-ISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC-Cccc-ccCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHHH
Confidence 7999999999999999999997754 1111 111112222223333 33 3578999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|+........++ ...+....
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEE---------GEALADEY 138 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 334468899999999874333222 22333344332222 3899999999987531112221 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..+ ..+|+.++.++.+++..+.+.+
T Consensus 139 ~~~~------~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKF------LETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 2567888899999999887765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=118.00 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+++.... .....|.. .....+.. ++ ..+.+|||||... +..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHH
Confidence 58999999999999999999987641 11112222 22222222 32 4578999999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|.+++-+-.. ..++..+....... .|+++|.||+|+........++ ...+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~---------~~~~~~ 134 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSER---------GRQLAD 134 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23344578999999999883322221 22344443332222 3899999999986541011111 122233
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+|++++.++.+|++.+...+
T Consensus 135 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 135 QLGFEFF------EASAKENINVKQVFERLVDII 162 (165)
T ss_pred HcCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 3232332 468888999999999887765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-15 Score=117.93 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+++|..|+|||||++.+++... ......|....+ ..+...+ ...+.+|||||.. .+....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF----DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE-----------RFKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHhhH
Confidence 799999999999999999998754 222222332222 2233311 3467899999943 222233
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhh-cccccceEEEEEeCCCCCCcch-hcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~-~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++|+|++++-+-. ...++..+.... ... .|+++|.||.|+..... ...++. ...+..
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~~~~~~~~~~--------~~~~~~ 136 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSPAQYALMEQD--------AIKLAA 136 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCccccccccHHH--------HHHHHH
Confidence 44567899999999997322221 223444443322 222 27899999999864311 111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ ..||.++.++.++++.+..+..+
T Consensus 137 ~~~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 137 EMQAEYW------SVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 3333333 46888899999999998887654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-16 Score=120.54 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=87.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
|+|+|++|||||||+|.|.+... ......|.......... ++..+.++||||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF----SEDTIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC----CcCccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 79999999999999999998754 11222233332333333 456788999999532 122222334
Q ss_pred CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
..+|++++|+|++. ...... ....+...+.. ....|+++|+||+|.... ....+.... +. +.......
T Consensus 66 ~~~d~ii~v~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~-~~~~~~~~ 135 (159)
T cd04159 66 RGVNAIVYVVDAAD-RTALEA-AKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN-LKSITDRE 135 (159)
T ss_pred hcCCEEEEEEECCC-HHHHHH-HHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC-cccccCCc
Confidence 67899999999872 211111 11122222110 012389999999998755 333322221 10 00000111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+. ....|++++.++.++++.+.+
T Consensus 136 ~~----~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 136 VS----CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred eE----EEEEEeccCCChHHHHHHHhh
Confidence 11 124688889999999988754
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=115.52 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|||||||++.+++..... ....+.+.......+.. ++ ..+.++||||.. .+....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~-----------~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL--DSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQE-----------RYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHHHH
Confidence 689999999999999999999776411 11122222222233333 33 357899999942 222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..++++++|+|+++..+-.+. .++..+....... .|+++|.||+|+........++ ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence 3345688999999999843333222 3444444433222 3899999999986431011111 22222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+..++ ++|+.++.++.++++.+...
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 22232 56888899999999987654
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=123.96 Aligned_cols=166 Identities=9% Similarity=-0.029 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|.+|||||||+|.+++...... ..|.......+.+ .+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999998653111 1122222333334 567889999999543 1222
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...++.++|++++|+|+++.-+-. ....+..+..... ....|+++|+||+|+... ..+.+.+.+.- .....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 234457899999999987321111 1112222211100 012389999999998643 11233333321 00000
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+...-.......++|+.++.++.++++++..
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00000000112346788899999999998854
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=117.30 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=93.9
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCC
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (352)
|+|.+|+|||||+|.|+|.... .+.. .+.|.......+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-VGNW-PGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-ccCC-CCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999987632 2122 22344444444555 567889999999876443221 11222222212 58
Q ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE
Q 018636 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (352)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (352)
+|++++|+|+. .... ....+..+.. .+ .|+++|+||+|+... ..+..... .+....+..+
T Consensus 75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~~~--------~~~~~~~~~~--- 134 (158)
T cd01879 75 PDLIVNVVDAT-NLER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKIDLD--------KLSELLGVPV--- 134 (158)
T ss_pred CcEEEEEeeCC-cchh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhhHH--------HHHHhhCCCe---
Confidence 99999999988 3322 2223333332 23 389999999999755 32222111 1222223222
Q ss_pred cCCCcccccchHHHHHHHHHHHHHH
Q 018636 184 DNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 184 ~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+.|+.++.++.++++.+....
T Consensus 135 ---~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 135 ---VPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ---EEEEccCCCCHHHHHHHHHHHh
Confidence 3567788899999998887654
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=120.93 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=92.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|..|+|||||++.+........ ..|.......+.. .+..+.++||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 348999999999999999999964433111 1222222333333 567889999999532 22223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+-.+ ....+...+... ...|++||.||.|+... ...++.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 344578999999999983221111 112222222211 12389999999998643 222221111 10 001
Q ss_pred cCCc-EEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~-~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..+ +++ ..+||.++.++.++++++.+.+.
T Consensus 148 ~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 VRQRNWYI----QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHH
Confidence 1111 221 24688899999999999876553
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-15 Score=116.80 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+|+++|+.|+|||||+|.+++...... ...+.+.......+.+ ++ ..+.+|||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 799999999999999999998765211 1112222222333333 33 3578999999322 222233
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|.+++-+-.+ ..++..+....+.. .|+++++||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEE---------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHH---------HHHHHHHhC
Confidence 34468899999999983322222 23444444333322 3999999999985331111111 112222223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..++ ..|+.++.++.++++.+.+.
T Consensus 137 ~~~~------~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFI------ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHHh
Confidence 2222 46778889999999988653
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=120.24 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+++|..|+|||||++.+........ ..|.......+.. .+..+.+|||||.. .+....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHHH
Confidence 447999999999999999999975433111 1222222333333 56788999999932 222233
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+-.+ ....+...+... ...|++|+.||.|+... ...+++.. .+..
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~l 145 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLGL 145 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhCc
Confidence 344578999999999983322111 112223222211 12389999999998755 33322221 1111
Q ss_pred c--CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 C--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~--~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
. ..+.+. ..++||+++.|+.++++++.+.+
T Consensus 146 ~~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 146 HSLRQRHWY---IQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred cccCCCceE---EEeccCCCCCCHHHHHHHHHHHH
Confidence 1 111111 12458889999999999987665
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=120.23 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|.+|+|||||++.|++...... ..|....+..+.+ ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986554211 1233333333444 567889999999542 112222
Q ss_pred cccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+.++|++++|+|+++.-+-. ....+..+....+ ....|+++++||+|+... ...++.... +. +...-.
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~-~~~~~~ 148 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-----LG-LTSIRD 148 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC-cccccC
Confidence 3446899999999998332111 1122222211111 012389999999998653 222221111 11 000001
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
..+. ..++||.++.++.++++++.
T Consensus 149 ~~~~----~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 149 HTWH----IQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CceE----EEecccCCCCCHHHHHHHHh
Confidence 1121 23678899999999998874
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-15 Score=116.65 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|.+|+|||||++.+++...... ...+.+.......+.... ...+.+|||||.. .+.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITIDGKQIKLQIWDTAGQE-----------SFRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHHH
Confidence 7999999999999999999998754111 111112222222223311 2467899999932 2222233
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........++ ...+....+
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 140 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEHG 140 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHcC
Confidence 34468899999999883322222 22333333332222 2899999999987431111111 112222223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+ .+.|+..+.++.+++..+.+.+
T Consensus 141 ~~~------~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIF------METSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222 2567788899999998877665
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=116.46 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=101.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc------CCCCCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~------~~~~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~ 88 (352)
-..+|.++|.+|.|||||+|.|++....... +.....+.........+. ++ ..++++|||||+|.-.. ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence 3479999999999999999999987431110 111123333444433332 22 36789999999986533 22
Q ss_pred HHHHHHHHH------------------hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 89 VGKEIVKCL------------------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 89 ~~~~~~~~~------------------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
.++-+..++ ......+|++||.+.++ +.++.-|...|+.+... + |+|-|+.|.|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~----v--NlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR----V--NLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc----c--Ceeeeeecccc
Confidence 233333322 12235689999999877 78888888777665442 2 89999999999
Q ss_pred CCcchhcHHHHhcccCChhHHHHHHhcCCcEEE
Q 018636 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (352)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (352)
++. +.|..+-.. +...+..+.-++|.
T Consensus 175 lT~--~El~~~K~~-----I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTD--DELAEFKER-----IREDLEQYNIPVFD 200 (373)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHhCCceeC
Confidence 988 888888777 77778777766663
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=139.81 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+++|+.++|||||+++|+|....... ....+.|....+..+...++..+.+|||||. +.+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-----------e~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-----------EKFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-----------HHHHHHHHH
Confidence 6899999999999999999985421111 1123456655555554445778899999994 334344444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
...++|++++|+++++.+...+...+..+.. ++.. ++++|+||+|+.+. ..++..... +..++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 5568999999999997787887877776654 3431 46799999999865 566655544 55555433311
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++|+.++.++.+|++.|..+...
T Consensus 140 ---~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 ---EAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1123467888999999999999887644
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=122.07 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+++|++|+|||||+|.|.|... ... .+.. +.+ ... .+|||||++... ...... +..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~----~~~--~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~~~----~~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT----LAR--KTQA-----VEF-NDK--GDIDTPGEYFSH---PRWYHA----LIT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc----cCc--cceE-----EEE-CCC--CcccCCccccCC---HHHHHH----HHH
Confidence 3799999999999999999998753 111 1111 112 111 279999986532 111222 223
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+.++|++++|+|++...+.... ++... +. ..|+++++||+|+... ..+. +..++...+..
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~ 121 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFE 121 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCC
Confidence 35689999999999844332221 12221 11 1289999999998543 1221 22233232221
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++|+.++.++.+|++.+.+.+.
T Consensus 122 ----~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 122 ----EPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ----CCEEEEECCCccCHHHHHHHHHHhch
Confidence 12235788899999999999988764
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-15 Score=116.83 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||+|.+++.... .....|.. .....+... ....+.+|||||... +...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV----SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEV 65 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHH
Confidence 47999999999999999999987652 12222222 222223331 134668999999532 1222
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcc---cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
....+.+++++++|+|++++-+-. ...++..+...... ....|+++|.||+|+........++ ...+
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 136 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLW 136 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHH
Confidence 233457899999999998433222 23345555544332 1224899999999986320011111 1122
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+..++ .+|+.++.++.++++.+.+.+
T Consensus 137 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 137 AESKGFKYF------ETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHHcCCeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 233233333 567788999999999876643
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=133.30 Aligned_cols=164 Identities=16% Similarity=0.058 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|||||||+|.|+|...+.. .....|.+.....+.+.+...+.++||||+.... + ..+.+.+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p-~~lve~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-P-HDLVAAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-C-HHHHHHHHHH-HH
Confidence 5899999999999999999999775321 1112344444444555344578899999985421 1 2223334433 23
Q ss_pred ccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.+..+|++++|+|++++.+..... +..++..+... ..|+++|+||+|+... .. ..+.. . ..+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~~~--~~--~~~~~---------~-~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDMLDD--FE--PRIDR---------D-EENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCCCc--hh--HHHHH---------H-hcCC
Confidence 456899999999998554444433 23334433221 2389999999998643 11 01110 0 0111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ ...+|++++.++.+|++.+...+.
T Consensus 337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 337 PI-----RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred Cc-----eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11 124689999999999999988874
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-15 Score=116.67 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|.+|+|||||++.|++..... ....+.+.......+.... ...+.+|||||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE--DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 379999999999999999998776411 1111112222222223311 24578999999432 222222
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|+++.-+-.. ..++..+........ |++++.||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLADQREVTFLE---------ASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcchhccCCHHH---------HHHHHHHcC
Confidence 33468899999999984333322 234444444433333 899999999986431011111 222333333
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..++ ..|+.++.++.++++.+.+
T Consensus 137 ~~~~------~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFL------ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHH
Confidence 3333 4577788999999988754
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=119.81 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|.+|+|||||++.|++...+... ...|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 5899999999999999999986432111 11122222222233 567889999999543 22222334
Q ss_pred cCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhc-ccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+.++|++++|+|++++.+-.. ...+..+..... .....|+++|+||+|+... ....+.... +. +......
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-----l~-~~~~~~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-----LG-LENIKDK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-----hC-CccccCc
Confidence 568999999999984332211 223333322110 0112399999999998754 222211111 00 0000011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+. ...+||+++.+++++++++.
T Consensus 138 ~~~----~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWH----IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEE----EEEeeCCCCCchHHHHHHHh
Confidence 111 23578899999999998874
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=116.81 Aligned_cols=156 Identities=16% Similarity=0.118 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
+|+|+|..|+|||||+|.+.+... ... .+.+.........+ .....+.+|||||..... .. +..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~----~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------AN----LAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-Ccc---CCCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HH----Hhh
Confidence 799999999999999999987654 111 11111111111111 134567899999965421 11 122
Q ss_pred ccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhc---HHHHhcccCChhHHHHHH
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT---LEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~---l~~~l~~~~~~~~~~~~~ 174 (352)
.+..+|++++|+|++++-+-.. ..++..+..... . .|+++|.||+|+... .. +++.+. .+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~--~~~~~~~~~~~--------~~~~ 133 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG--SSQAGLEEEML--------PIMN 133 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc--cchhHHHHHHH--------HHHH
Confidence 2367899999999884433333 234555554332 2 399999999999754 22 222221 1212
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..... .....+||.++.+++++++.+.+.+
T Consensus 134 ~~~~~----~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 134 EFREI----ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHhcc----cEEEEeccccccCHHHHHHHHHHHh
Confidence 11110 0123568888999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-15 Score=115.89 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|++|+|||||+|.+++..... ....+.... ...+.+. .+..+.+|||||.. .+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~-----------~~~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE----NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE-----------RYRSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEEECCEEEEEEEEeCCchH-----------HHHHH
Confidence 689999999999999999999876522 111222211 1222231 13457899999932 22222
Q ss_pred HhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|+++.-+- ....++..+.......+ |++++.||+|.........++ ...+...
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~ 135 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNI--IIALVGNKADLESKRQVSTEE---------AQEYADE 135 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECccccccCcCCHHH---------HHHHHHH
Confidence 23344678999999998732221 12334455554432223 899999999987431011221 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..+ .+.|+.++.++.++++.+.+.+
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 136 NGLLF------FETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCEE------EEEECCCCCCHHHHHHHHHHHh
Confidence 33222 3567888899999999877654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-15 Score=115.82 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+.+... ......|..... ..+.. ++ ..+.+|||||.. .+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF----MADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE-----------RFRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC----CCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHH
Confidence 6899999999999999999987653 122222322222 22233 33 356899999932 2223
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~ 173 (352)
.....+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|+... ..+ .+. ...+.
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~~~--------~~~~~ 134 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTYEE--------AKQFA 134 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCHHH--------HHHHH
Confidence 33344578999999999984333222 23333333332222 389999999998654 211 111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+..++ .+||.++.++.+++..+...+
T Consensus 135 ~~~~~~~~------e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 135 DENGLLFL------ECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33333332 568888999999988776544
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=119.94 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|.+|+|||||++.+.+....... .|.......+....+..+.++||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 5899999999999999999987652221 1222222333332356789999999542 11222233
Q ss_pred cCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC-
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 177 (352)
+.++|++++|+|.++..+-.. ..+...+...... ..|+++|+||+|+... ...++.... +. +...+.
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~--~~~~~i~~~-----~~-~~~~~~~ 134 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPGA--LTAEEITRR-----FK-LKKYCSD 134 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccccC--cCHHHHHHH-----cC-CcccCCC
Confidence 467899999999884322111 1122222211101 2399999999998643 222222111 00 000011
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+ ...++||.++.|+.++++.|..
T Consensus 135 ~~~----~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDW----YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcE----EEEecccccCCChHHHHHHHhc
Confidence 011 1235789999999999998743
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=135.39 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~ 96 (352)
..+|+++|.+|||||||+|.|+|.... .+... ++|+......+.+ ++..+.++||||.++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~p-GvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWA-GVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCC-CceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999998652 22332 3455444444444 67789999999998754211 1122222222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
. .....+|++++|+|++ .+... ......+.+ .+. |+++++||+|.... ..+... ...+-+..
T Consensus 80 ~-l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e-~gi----PvIvVlNK~Dl~~~--~~i~id--------~~~L~~~L 141 (772)
T PRK09554 80 Y-ILSGDADLLINVVDAS-NLERN-LYLTLQLLE-LGI----PCIVALNMLDIAEK--QNIRID--------IDALSARL 141 (772)
T ss_pred H-HhccCCCEEEEEecCC-cchhh-HHHHHHHHH-cCC----CEEEEEEchhhhhc--cCcHHH--------HHHHHHHh
Confidence 1 1235789999999998 44322 223333333 233 99999999998744 222221 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..+ .+.|+.++.++++|.+.+.....
T Consensus 142 G~pV------vpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPV------IPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCE------EEEEeecCCCHHHHHHHHHHhhh
Confidence 4333 35678888999999999988764
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-15 Score=119.29 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
++|+|+|..|+|||||++.+.+... +.....|....+. .+...++ ..+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF----PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4799999999999999999997764 2222223322222 2222212 3568999999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+|++++-+-.+. .++..+... ... .|+++|.||+|+... ......+.. .....+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~~---~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVTP---AQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcCH---HHHHHHHH
Confidence 23345789999999999844333332 233333332 222 399999999998643 111111100 01222333
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. .+ ..+|+.++.++.+++..+...+.
T Consensus 138 ~~~~~~~------~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 138 KQGAFAY------LECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HcCCcEE------EEccCCCCCCHHHHHHHHHHHHH
Confidence 3333 22 25688889999999998877654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=143.25 Aligned_cols=163 Identities=21% Similarity=0.192 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|......... .++|.........+ ++..+.+|||||+.... ..+...+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~-pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDT-PGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence 36899999999999999999998754222222 23454444444455 67889999999987422 123445555555
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++..+|++++|+|++..++..+..+...+... + .|+++|+||+|.... ... ....... +
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~l-g- 409 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWKL-G- 409 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHHc-C-
Confidence 566789999999999877888777777766542 3 299999999998643 111 1111111 1
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++||.++.|+.+|++.+...+..
T Consensus 410 ----~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 ----LGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ----CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1112356899999999999998877643
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-15 Score=120.10 Aligned_cols=165 Identities=17% Similarity=0.110 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||++.+++... +.....|....+ ..+.. ++ ..+.+|||+|.... ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~-----------~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF----PQVYEPTVFENYVHDIFV-DGLHIELSLWDTAGQEEF-----------DRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----CCccCCcceeeeEEEEEE-CCEEEEEEEEECCCChhc-----------ccc
Confidence 3799999999999999999987654 111122221111 12222 33 46789999995431 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----CC-hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~~-~~~ 169 (352)
...++.++|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+... ....+.+... .. ...
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 2234578999999999984433322 235555554332 2 389999999998754 2222211100 00 001
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+....+.-.+ ..+||+++.++.+++..+.+.+..
T Consensus 140 ~~~~~~~~~~~~-----~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 140 LAVAKRINALRY-----LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHcCCCEE-----EEccCCcCCCHHHHHHHHHHHHhc
Confidence 122222222112 257888999999999998877643
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=132.33 Aligned_cols=143 Identities=20% Similarity=0.127 Sum_probs=83.3
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeC--CceEEEEeC-
Q 018636 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD--GQVVNVIDT- 76 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~lvDt- 76 (352)
|++.+.++..+... .+.||+|||+||+|||||+++|+|... +..|.++.... +.+..... ...-++.|.
T Consensus 14 g~~~l~~~~~l~~~--~G~riGLvG~NGaGKSTLLkilaG~~~----~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v 87 (530)
T COG0488 14 GDRPLLENVSLTLN--PGERIGLVGRNGAGKSTLLKILAGELE----PDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYV 87 (530)
T ss_pred CCceeecCCcceeC--CCCEEEEECCCCCCHHHHHHHHcCCCc----CCCCeEeecCCceEEEeCCCCCcCCCccHHHHH
Confidence 44555555555554 448999999999999999999999987 77776665432 22221100 000011111
Q ss_pred -CCCCCCCCCcHHHHHHHHHHH------------------------------hcccC--CccEEEEEEecCCCCCHHHHH
Q 018636 77 -PGLFDLSAGSEFVGKEIVKCL------------------------------GMAKD--GIHAFLVVFSVTNRFSQEEET 123 (352)
Q Consensus 77 -pG~~~~~~~~~~~~~~~~~~~------------------------------~~~~~--~~~~~l~v~~~~~~~~~~~~~ 123 (352)
.|+.. -..+..++.... ..... +.... --++ ..+|++++.
T Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~-~~LSGG~r~ 160 (530)
T COG0488 88 IEGFGE----LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPV-SSLSGGWRR 160 (530)
T ss_pred HhhhHH----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCch-hhcCHHHHH
Confidence 01000 000000000000 00000 11111 1222 489999999
Q ss_pred HHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 124 AVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
++.+++.++++ |.+++ +||+|...- .||++|+..
T Consensus 161 Rv~LA~aL~~~----pDlLLLDEPTNHLD~~~i--~WLe~~L~~ 198 (530)
T COG0488 161 RVALARALLEE----PDLLLLDEPTNHLDLESI--EWLEDYLKR 198 (530)
T ss_pred HHHHHHHHhcC----CCEEEEcCCCcccCHHHH--HHHHHHHHh
Confidence 99999999987 77777 599999977 999999886
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-15 Score=116.39 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||++.+.+... +.....|....+ ..+.+ ++ ..+.++||||... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF----PDYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CCCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 6899999999999999999886654 111222222111 12333 34 3568899999543 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|++++++.+-.... ++..+..... ....|+++|.||+|+... ..+.... ...+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHH
Confidence 333456889999999998555544433 3344444321 112399999999998643 2221100 1122223
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ .+||.++.++.++++.+...+.
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 233333 5688889999999998876543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=115.08 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|++|+|||||++.+++..... ....+.+.......+.+ ++ ..+.+|||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 489999999999999999999876411 11111222222233333 33 3678999999322 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|+++..+.... .++..+....... .|++++.||+|..... ....+. ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQR-QVSREE--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccccc-CCCHHH--------HHHHHHHc
Confidence 3334678999999999843333222 2334443332222 3999999999986530 111111 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..++ +.|+.++.++.++++.+.+.+.
T Consensus 136 ~~~~~------e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFF------ETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 43333 4577778999999998877653
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=114.74 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++..... ....+.+.......+.. .+ ..+.+|||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 689999999999999999999765411 11112222222233333 33 3578999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|+++.-+-.. ..++..+....... .|+++|.||+|+........++ ...+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 334468899999999983222222 22334343332222 3899999999986441011111 12222232
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ ++|+.++.++.+++..+.+.+
T Consensus 138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFL------ETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEE------EEECCCCcCHHHHHHHHHHHH
Confidence 33333 567888899999999887655
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=123.82 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=123.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~ 96 (352)
..++|||||.+|+|||||.|.+.|...+. .+....|+.+....+...+..++.++||||+........ .....+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 34799999999999999999999998843 556667787777777665788999999999987543221 111222223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH--HHHhcccCChh-HHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL--EDFLGHECPKP-LKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l--~~~l~~~~~~~-~~~~~ 173 (352)
.+.+...+|++++++|++..-....-..|..+.....- |.++|+||+|........+ .+.+....-.. ..++-
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----CceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 34455688999999999832222233455555554332 8999999999875411111 11111100000 00111
Q ss_pred HhcCCc-----------EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 018636 174 QLCDNR-----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK 221 (352)
Q Consensus 174 ~~~~~~-----------~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 221 (352)
+.+... +--|...+..||..++++++|.+++....+. +.+.|..++.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i~ 282 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADIV 282 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCcccc
Confidence 111110 1123445678999999999999998777654 5556766653
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=120.46 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE--EEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|++||..|+|||||++.++.... ......|....+.. +... ....+.+|||+|....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f----~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------- 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC----CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 4558999999999999999998765443 11122232222222 2221 2347789999995432
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.......+.+++++++|+|++++.+-.. ..++..+..... . .|++||.||+|+... ....+. + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKNR--QVKAKQ--------V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence 1222234578899999999985443322 234555554432 2 399999999998543 211111 1 12
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+..|+ .+||+++.++.+++.++...+..
T Consensus 142 ~~~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 142 HRKKNLQYY------EISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HHhcCCEEE------EcCCCCCCCHHHHHHHHHHHHHc
Confidence 222233333 46888999999999998876643
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=117.20 Aligned_cols=158 Identities=22% Similarity=0.173 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|.+|+|||||++.+++... ......|.... .....+ ++ ..+.++||||..+. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~--- 65 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF--------SA--- 65 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcch--------hH---
Confidence 37999999999999999999987653 11111222111 112223 33 35678999996542 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+++++.-+-... .++..+..... ....|+++++||+|+... ..+... . ...+..
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~ 135 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ--RKVSRE--E-----GQELAR 135 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc--ceecHH--H-----HHHHHH
Confidence 122233578999999999843222221 22333333221 112389999999998654 211110 0 122222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..+ ...|+.++.++.++++.+.+.+
T Consensus 136 ~~~~~~------~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 136 KLKIPY------IETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HcCCcE------EEeeCCCCCCHHHHHHHHHHhh
Confidence 223222 2568888999999999876543
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=117.99 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|+|||||++.+.+...... ....+.........+.+ ++ ..+.||||||-. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 3799999999999999999987654111 11111111111111222 33 467899999932 222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-.. ..++..+........ |+++|.||+|+........+ . ...+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~--piiiv~NK~Dl~~~~~~~~~-~--------~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDV--VIMLLGNKADMSGERVVKRE-D--------GERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEEcccchhccccCHH-H--------HHHHHHHc
Confidence 334568899999999984332222 334555555433333 89999999998643101111 1 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+..|+ +.|+.++.++.+|+..+.+.+...
T Consensus 137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFM------ETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 568888999999999998877653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=118.01 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=83.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|++|+|||||+|.+++... ... .|.. ..+ .. .+|||||.... .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----~~~--~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----LYK--KTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----ccc--ccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999998754 111 1211 112 11 58999996321 11112222234
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+.++|++++|+|++++.+.....++. .++. |+++|+||+|+.... ...+ . ...+....+..
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~~----p~ilv~NK~Dl~~~~-~~~~-~--------~~~~~~~~~~~- 120 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFVK----PVIGLVTKIDLAEAD-VDIE-R--------AKELLETAGAE- 120 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hccC----CeEEEEEeeccCCcc-cCHH-H--------HHHHHHHcCCC-
Confidence 67999999999998555443322222 2232 899999999986431 1111 1 12233332321
Q ss_pred EEEcCCCcccccchHHHHHHHHHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
....+|++++.++.+|++.+
T Consensus 121 ----~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 121 ----PIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred ----cEEEEecCCCCCHHHHHHHH
Confidence 12256888899999998875
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=116.06 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+... +.....|....+. .+.. ++ ..+.+|||+|.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF----PSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 5899999999999999999986543 1222223322221 2233 34 45679999996432 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC-----ChhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~-----~~~~ 169 (352)
....+.++|++++|+|++++-+-... .++..+....+ . .|++||.||.|+... ..+.+.+.... ....
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 22355689999999999844333332 24444544322 2 399999999998654 22222222100 0111
Q ss_pred HHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+....+. .|+ .+||+++.++.++++.+..
T Consensus 141 ~~~a~~~~~~~~~------e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLKAVKYV------ECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhCCcEEE------EecCCCCCCHHHHHHHHHH
Confidence 222222232 232 5688899999999987655
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=117.52 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|..|+|||||++.+++.... ....|.......+.+ .+..+.+|||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 5899999999999999999988631 122233333333344 5678899999995431 1122233
Q ss_pred cCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 101 KDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+.++|++++|+|++.+-+-. ....+..+..... ....|++++.||+|.... ...++.... +.... ....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~--~~~~ 133 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEK--ILGR 133 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhh--ccCC
Confidence 45789999999998321111 1122222222111 112399999999998765 323222211 11000 1111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.. .....|++++.++.++++.+.
T Consensus 134 ~~---~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 134 RW---HIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cE---EEEEeeCCCCCCHHHHHHHHh
Confidence 11 122557888899999988764
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=119.35 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++... ......|.. .....+.+.+ ...+.||||||... ...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~----~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF----GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHH
Confidence 3799999999999999999997654 222222332 2222333322 34678999999322 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+.++|++++|+|+++.-+-... .++..+...... ....|+++|.||+|+.... ....+. ...+.
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~-~v~~~~--------~~~~~ 136 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR-TVKDDK--------HARFA 136 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc-ccCHHH--------HHHHH
Confidence 223345789999999999843332222 345555554432 1122688999999986431 111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ ..||+++.++.++++.+...+.
T Consensus 137 ~~~~~~~~------~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 137 QANGMESC------LVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 33332222 4688899999999998877653
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=119.60 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|..|+|||||++.+.+.......++.+ .......+... .+..+.+|||||... +....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKG---FNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCcCCccc---cceeEEEeeccCCCceEEEEEECCCcHh-----------HHHHH
Confidence 789999999999999999998765421111111 11111122211 345788999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|+++.-+-.+ ...+..+..... ....|+++|+||+|.... ....++.++.. -..
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~---------~~~ 139 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLAL---------HEL 139 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCc---------ccc
Confidence 334568999999999873211111 122222322211 112399999999998643 11112222110 001
Q ss_pred cCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
... .+. ..++||.++.++.++++.+.+.+
T Consensus 140 ~~~~~~~----~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 140 SASTPWH----VQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCCCceE----EEEeecccCCCHHHHHHHHHHHH
Confidence 111 111 12578899999999999887665
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=117.00 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-----------CCceEEEEeCCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-----------DGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-----------~~~~~~lvDtpG~~~~~~~ 85 (352)
..+|+++|..|||||||++.+.+... ......|.. .....+.+. ....+.+|||||.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------ 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF----NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------ 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC----CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh------
Confidence 37999999999999999999987654 111111221 111112211 1246789999992
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-cccccceEEEEEeCCCCCCcchhcH-HHHhc
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTL-EDFLG 162 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~ 162 (352)
+.+.......+.++|++++|+|++++-+-.. ..++..+.... ... .|+++|.||+|+... ... .+.
T Consensus 74 -----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~Dl~~~--~~v~~~~-- 142 (180)
T cd04127 74 -----ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN--PDIVLCGNKADLEDQ--RQVSEEQ-- 142 (180)
T ss_pred -----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEeCccchhc--CccCHHH--
Confidence 3333344445578999999999984332222 23333343321 112 289999999998643 111 111
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+....+..+ ..+|++++.++.++++.+.+.+
T Consensus 143 ------~~~~~~~~~~~~------~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 143 ------AKALADKYGIPY------FETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ------HHHHHHHcCCeE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222333333223 2568888999999999887654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-15 Score=116.42 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+..... ....|.. .....+.. ++ ..+.+|||||.... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE----KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQF-----------TAM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------chH
Confidence 689999999999999999998665311 1111221 11122233 33 34578999995432 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+++++.-+-.. ..++..+..... ....|+++|.||+|+... ..+ .+. ...+..
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~--------~~~~~~ 134 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE--RVVSREE--------GQALAR 134 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--ceecHHH--------HHHHHH
Confidence 2233468899999999984333222 233344443322 122389999999998643 211 111 112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+..++ ++||+++.++.++++.+.+.
T Consensus 135 ~~~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 135 QWGCPFY------ETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHh
Confidence 3232222 56888899999999987654
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-15 Score=119.59 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=92.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|.+|+|||||++.+++... .. ....|... ....... ++. .+.+|||||... +....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 64 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VE---TYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALR 64 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Cc---cCCCchHhhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 589999999999999999986543 11 11112111 1112223 343 467899999432 11222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|+++.-+-.. ..++..+...... ....|+++|.||+|+... ..+... . ...+...
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~--~-----~~~~~~~ 135 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE--E-----GAALARR 135 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH--H-----HHHHHHH
Confidence 234568899999999984333222 2344444443221 122389999999998643 111100 0 1122233
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ ..||.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~------e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 136 LGCEFI------EASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred hCCEEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 333332 5688889999999999887654
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=117.23 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++...... ...|..... ..+... ....+.++||||..... .+ .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~---~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AM---Q 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC----cCCcchheEEEEEEECCEEEEEEEEECCCCCcch--------HH---H
Confidence 6899999999999999999987653111 111211111 111121 23456799999965421 11 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccc-ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+... ..++..+....+.. ...|+++|.||+|+... ..+.... .......
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~ 137 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATE 137 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHH
Confidence 223457899999999984444332 34455555544321 22399999999998653 1111100 1111112
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+..+ .++||+++.++.++++.|.++
T Consensus 138 ~~~~~------~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 138 WNCAF------METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred hCCcE------EEeecCCCCCHHHHHHHHHhc
Confidence 22222 256888999999999987654
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=136.00 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc--ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+++|+.++|||||+|.|+|... ++. ....++|....+..+.+ ++..+.+|||||. +.+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGh-----------e~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGH-----------EKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCH-----------HHHHHHHH
Confidence 699999999999999999998542 111 12234566665555555 5688899999993 33444444
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+.++|++++|+|+++.+.......+..+.. ++-. ++++++||+|+.+. ..++..... +..++...+.
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence 55678999999999986666666666665543 3431 49999999999865 554433333 4444443221
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. ......++|+.++.++.++.+.+..++..
T Consensus 138 ~--~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 138 L--KNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred C--CCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 0 00122367888999999999988887754
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=114.98 Aligned_cols=156 Identities=16% Similarity=0.102 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-C--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|||||||++.++.... ......|.........+. + ...+.+|||||...... +
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~--- 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------L--- 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------c---
Confidence 3799999999999999999985543 111222332222222211 2 34678999999643211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|+++.-+-... .++..+....+ ..|+++|.||+|+... ....+ ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence 11234688999999999844333222 34455555443 2399999999998633 21111 1112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ ++||+++.++.++++.+.+.+..
T Consensus 132 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYY------EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEE------EEeCCCCCChHHHHHHHHHHHHh
Confidence 222333 56888899999999998876643
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=118.52 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+++|+.|+|||||++.+++.... .....|. ......+.+ ++ ..+.||||||.. .+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~----~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~-----------~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC----LESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE-----------RY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcH-----------HH
Confidence 4479999999999999999999877541 1112222 222223333 33 367899999932 23
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKE 171 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~ 171 (352)
.......+.+++++++|+|.++.-+-.. ..++..+........ |+++|.||+|+... ..+ .+. ...
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--piiiv~nK~Dl~~~--~~~~~~~--------~~~ 142 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI--VIMMAGNKSDLNHL--RSVAEED--------GQA 142 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--eEEEEEEChhcccc--cCCCHHH--------HHH
Confidence 3333445578999999999984333222 235555555433333 89999999998543 111 111 112
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+....+..++ .+||.++.++.++++.+...+
T Consensus 143 l~~~~~~~~~------e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 143 LAEKEGLSFL------ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 2222222222 567888999999999876655
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.7e-15 Score=114.78 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE--Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||+|.|.+..... ....|........ ... ....+.++|+||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE----NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC----ccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 379999999999999999999877522 1122222222222 221 235678999999532 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+... ..++..+....... .|+++++||+|..... ....+. ...+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQR-QVSTEE--------AQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccc-cccHHH--------HHHHHHH
Confidence 3334467899999999983211111 22444444432112 3899999999996221 212222 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+..++ ..|+.++.++.++++.+.
T Consensus 135 ~~~~~~------~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFF------ETSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHh
Confidence 333333 456667788999988764
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=114.58 Aligned_cols=154 Identities=21% Similarity=0.186 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
.+|+++|..|+|||||++.+++... ......|.... ...+.+. ....+.+|||||.. .+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~ 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF----TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFD 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHH
Confidence 3799999999999999999997654 11111222222 1222221 23467899999932 222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+.++|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+........++ ...+.
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~ 133 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNEE---------AEALA 133 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHHH---------HHHHH
Confidence 223334578999999999883322222 223333333222 2 3999999999986541111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+..++ +.|+.++.++.++++.+..
T Consensus 134 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 134 KRLQLPLF------RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHH
Confidence 33333333 4677788999999987754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-15 Score=126.26 Aligned_cols=166 Identities=22% Similarity=0.153 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.-..|+|+|-+|+|||||+|+|+|...+.. ..-..|.+.....+.+.++..+.+-||-||...- ...+...|...+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHHH
Confidence 447999999999999999999998877432 2223344444455566568999999999998742 233344454444
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
... ..+|+++.|+|++++.-.... .....+.++-..+ .|+++|+||+|.... ......+.. ..
T Consensus 267 EE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~~-----------~~ 330 (411)
T COG2262 267 EEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELER-----------GS 330 (411)
T ss_pred HHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhhh-----------cC
Confidence 433 478999999999955322222 3334444432222 399999999998866 331111111 11
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+ ..+..||.++.+++.|.+.|.+.+..
T Consensus 331 ~-------~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 331 P-------NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred C-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1 23456899999999999999998864
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-15 Score=116.03 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|..|+|||||++.+.+... .. ...|.......+.. ++..+.++||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~---~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KK---VAPTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--cc---ccCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 489999999999999999998732 11 11222222233344 677889999999422 22223345
Q ss_pred cCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+.++|++++|+|+++.-+-.+ ...+..+..... ....|++||.||.|+... ....+..... .+..+....+..
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~---~l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEYL---SLEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHhc---CcccccCCCCce
Confidence 578999999999983322221 222332222111 112399999999998765 3333332220 012222122223
Q ss_pred EEEEcCCCcccccch------HHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGT------EQVRQLLSLVN 205 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~------~~~~~L~~~i~ 205 (352)
+++ ..+||.++ .++.+-++++.
T Consensus 138 ~~~----~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHI----EPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEE----EEeEceeCCCCccccCHHHHHHHHh
Confidence 333 23566666 78888888874
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=114.65 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||++.++.... .. ....|.... ...+.. ++ ..+.+|||||.... ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VE---KYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF-----------TAM 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCcchheEEEEEEE-CCEEEEEEEEECCCcccc-----------hhH
Confidence 5899999999999999999885432 11 111222111 122333 33 34578999995431 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|.++.-+-.+ ..++..+..... ....|+++|.||+|+... ..+... ....+...
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVVGKE-------QGQNLARQ 135 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEEcHH-------HHHHHHHH
Confidence 2224467899999999873332222 223344433221 112399999999998643 111100 01122233
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+||+++.++.+++..+.+.+
T Consensus 136 ~~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hCCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 333332 568888999999999887654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=114.45 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+++|.+|||||||++.+++... ......+. ......+.+ .+ ..+.++||||... +.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~ 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF----PPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FR 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 37999999999999999999986543 11112222 222222333 34 3467899999432 12
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+..+|++++|+|+++..+... ..++..+........ |+++|.||+|.... ..+...+. ..+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~~i~v~NK~D~~~~--~~i~~~~~-------~~~~ 139 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKV--ITILVGNKIDLAER--REVSQQRA-------EEFS 139 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccc--cccCHHHH-------HHHH
Confidence 222234467899999999873322221 233444444433333 88999999998644 22111111 1111
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
......+ ...|+.++.++.++++.+.+.
T Consensus 140 ~~~~~~~------~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 140 DAQDMYY------LETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HHcCCeE------EEeeCCCCCCHHHHHHHHHHH
Confidence 2212222 256888899999999988764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-15 Score=136.35 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=104.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+++|+.|+|||||++.|.+..... ...++.|.....+.+.+.++..+++|||||..+. ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~--~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ--GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc--ccCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 34799999999999999999999865422 1223455555555555534458999999996542 1122
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+++++.........+..+.. .+- |+++++||+|+.....+.+.+.+.. ..-....++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~v----PiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-ANV----PIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cCC----CEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 234567899999999986666666655554433 232 8999999999864322333333332 111112222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+... ..+.||.++.++.+|++.+..
T Consensus 223 ~~~~----~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTI----FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCce----EEEEECCCCCChHHHHHhhhh
Confidence 2211 236799999999999998754
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=116.88 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|..|+|||||++.+++... ......|.. .....+.+. ....+.+|||||... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~----~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF----SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999987653 111222332 222233332 134568999999532 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhc--ccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+.+++++++|+|++++-+-... .++..+..... .....|++||.||+|+........++ ...+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHHH
Confidence 233345789999999999843332222 23333333211 11223899999999986320011111 2223
Q ss_pred HHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+ ..++ .+|++++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~~~------e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 137 CKENGFIGWF------ETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred HHHcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333 1222 5688889999999998877664
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=113.78 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC-CcccccCCCCCcceeeEe--EEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEM--KTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
++|+++|.+|+|||||++.|.+. ..+. .....|....+ ..+... ....+.+|||||. +.+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHH
Confidence 47999999999999999999854 2222 12222332222 222221 2357789999993 2222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+..+|++++|+|+++.-+-.. ..++..+.... ...|+++|.||+|+... ..+.... ...+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence 223334568999999999984322221 23444444332 12389999999998654 2211110 11111
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+..++ ..|+.++.++.++++.+.+.+
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHHh
Confidence 22222222 467888999999999877653
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=112.37 Aligned_cols=141 Identities=23% Similarity=0.289 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.||+|||+.|||||||+++|.|... .... |....+. + .+|||||-+-. ...+..++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~----~~~K--Tq~i~~~-----~----~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI----RYKK--TQAIEYY-----D----NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC----CcCc--cceeEec-----c----cEEECChhhee-------CHHHHHHHHH
Confidence 5899999999999999999998765 2222 2221111 1 26999996542 2334444444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
....+|++++|.|++.+.+.---. +...|.. |+|-|+||+|+...+ ..++. ....+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~----fa~~f~~----pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPG----FASMFNK----PVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCch----hhcccCC----CEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 445889999999998332211111 2233443 999999999998321 33332 23344444443
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.. ..+|+.++.++.+|.+.+.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 32 3567888999999999875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=113.26 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|++|+|||||+|.+++..... ....+.........+.+ .+. .+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 379999999999999999999775411 11111122222222334 333 456899999432 11222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++++|++++-+-... .+...+...+.. ....|+++|+||+|+........+ . ...++.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK-K--------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH-H--------HHHHHH
Confidence 2344688999999998743322222 222222222221 112399999999999742101122 1 222333
Q ss_pred hcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+ ..++ ..|+.++.++.++++.+.+.+..
T Consensus 138 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYF------ETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 333 2222 46788899999999988876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=114.91 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|..|+|||||+|.+.+.... . ....|.. ........ ++ ..+.+|||||..... .+ .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~---~ 65 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-D---DYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AM---R 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-c---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HH---H
Confidence 7999999999999999999976541 1 1111211 11122223 33 356789999965421 11 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHH-HHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~-~~l~~~~~~~~~~~~~~ 175 (352)
...+.+++++++|++++++-+-... .+...+...... ...|+++|.||+|+... ..+. +. ...+...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~~--------~~~~~~~ 134 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTEE--------GKELARQ 134 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHHH--------HHHHHHH
Confidence 2234578999999998843222221 223333332221 12389999999998653 1111 11 1223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ ++|++++.++.++++.+.+.+.
T Consensus 135 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 135 WGCPFL------ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCEEE------EeecCCCCCHHHHHHHHHHHHh
Confidence 333332 5688889999999998876543
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=128.66 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+.+|+|+|++|+|||||+|.|++.........+ +.|.......+.+ ++..+.+|||||+.+.....+. ..+ ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p-gtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~--~gi-~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK-GTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER--LGI-EKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-CcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH--HHH-HHH
Confidence 4579999999999999999999987532122222 2244444444555 7888999999998753211111 111 112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
..++..+|++++|+|++++.+..+. ++..+.. .+ .|+++|+||+|+..
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-~~----~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-SK----KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-CC----CCEEEEEECccCCC
Confidence 2345689999999999866665544 3333322 12 28999999999863
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=119.79 Aligned_cols=167 Identities=8% Similarity=-0.013 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||++.|.+..... ...|.......+.+ ++..+.++||||... .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 45899999999999999999999865411 11122222333444 577888999999432 11222
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhH---HHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPL---KEI 172 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~---~~~ 172 (352)
...+.+++++++|+|+++.-+-. ....+..+... ......|++++.||+|+... ....+.+++.. ..... ..+
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALGL-YGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc-ccccccccccc
Confidence 23446889999999987321111 11222222211 11122499999999998643 11223332221 00000 000
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+.....+ ....+||+++.|+.++++++...
T Consensus 159 ~~~~~~~~----~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPI----EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeE----EEEEeEecCCCChHHHHHHHHhh
Confidence 00001111 12467999999999999988653
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=114.43 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+++|++|+|||||++.|++..... ......+.......+.+.. ...+.++||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 479999999999999999999775411 1111122222222223311 246789999995331 11112
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+.++|++++|+|.++.-+.... .++..+..... ....|+++|.||+|+.... ...++ ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcC
Confidence 234678999999998833332222 23444444322 2233899999999987431 11121 112222222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
-.+ .+.|+.++.++.++++.+.+
T Consensus 137 ~~~------~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLF------IETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CEE------EEEecCCCCCHHHHHHHHHH
Confidence 222 25677888999999987654
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-14 Score=115.61 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+|+|..|+|||||++.+++... ......|. ......+.+ .+ ..+.||||||... +.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~ 69 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF----SGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FR 69 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HH
Confidence 47999999999999999999987654 11111222 222222333 23 3577999999432 11
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEI 172 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~ 172 (352)
......+.+++++++|+|++++-+-.. ..++..+..... . .|++||.||+|+... ..+ .+. ...+
T Consensus 70 ~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~--~piivVgNK~Dl~~~--~~~~~~~--------~~~~ 136 (199)
T cd04110 70 TITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-D--VCKVLVGNKNDDPER--KVVETED--------AYKF 136 (199)
T ss_pred HHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cccCHHH--------HHHH
Confidence 222334467899999999984333222 234444444322 2 389999999998754 211 111 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+..++ .+|+.++.++.++++.+...+.
T Consensus 137 ~~~~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 137 AGQMGISLF------ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHcCCEEE------EEECCCCcCHHHHHHHHHHHHH
Confidence 333333333 4677888999999998877654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=109.64 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
-.+|+|+|.+|+|||-|+..+.+...... ...++.++.....+.+ +|. .+.||||.| .+++...
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAG-----------QERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVEL-DGKTIKLQIWDTAG-----------QERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeee-cceEEEEEeeeccc-----------cHHHhhh
Confidence 36999999999999999999987765221 1222334555555555 444 568999999 5667777
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+|+++|++|+|+|++..-|-. -..|+..+.......+ |.++|.||+|+.+. ..+..-. .+.+...
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~-------a~~fa~~ 143 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEE-------AQEFADE 143 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHH-------HHHHHHh
Confidence 888999999999999999444322 2346666766655554 89999999998765 2221100 1122222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
.+-..+ .++||+...++.+.+..+...+....
T Consensus 144 ~~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 144 LGIPIF-----LETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCcce-----eecccCCccCHHHHHHHHHHHHHHhc
Confidence 222212 25688888999999988887776543
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=116.56 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++.... .. ....|....+ ..+.. ++. .+.+|||||.... ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VG--PYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-Cc--CcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 37999999999999999999976541 11 1122222222 22333 343 4568999995431 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|+++.-+-.. ..++..+... .. ..|+++|.||+|+.... .... .+.. .....+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~~~~-~~~~-~v~~---~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLIEQD-RSLR-QVDF---HDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEcccccccc-cccC-ccCH---HHHHHHHH
Confidence 12234468999999999983322221 2344444443 21 23899999999986431 0000 0000 01222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.+|++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 138 EIKAQHF------ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333332 4578888999999999887653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=111.89 Aligned_cols=161 Identities=24% Similarity=0.191 Sum_probs=94.1
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCC
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (352)
|+|+.|+|||||+|.|++......... .+.+............+..+.++||||+.+...........+ ...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPV-PGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCC-CCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence 589999999999999998765322222 222333333333332367889999999987654333211122 223357
Q ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH-hcCCcEEE
Q 018636 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCDNRCVL 182 (352)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~ 182 (352)
+|++++|+++....+......+..+.. .. .|+++|+||+|.... ......... ...... .....+
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-~~----~~~ivv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~~~~-- 141 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-RG----KPVLLVLNKIDLLPE--EEEEELLEL-----RLLILLLLLGLPV-- 141 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CeEEEEEEccccCCh--hhHHHHHHH-----HHhhcccccCCce--
Confidence 899999999985555544442222221 22 289999999998865 433332210 000111 111122
Q ss_pred EcCCCcccccchHHHHHHHHHHHHH
Q 018636 183 FDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 183 ~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...|+.++.++.++++.+.+.
T Consensus 142 ----~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 142 ----IAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ----EEEeeeccCCHHHHHHHHHhh
Confidence 245667778899998887654
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-14 Score=111.84 Aligned_cols=157 Identities=16% Similarity=0.102 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+++|..|+|||||+|.+++..... ....+.+.......+... ....+.+|||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 379999999999999999999775411 111111112212222221 123578999999322 112222
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|+++.-+.... .++..+...... ..|+++++||+|.... ..+ .+. ...+....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~~~~--------~~~~~~~~ 135 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVSKSE--------AEEYAKSV 135 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCHHH--------HHHHHHHc
Confidence 234678999999998733222222 233344443332 2389999999998744 111 111 22222332
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+..++ ..|+.++.++.++++.+.+.
T Consensus 136 ~~~~~------~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 136 GAKHF------ETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 33332 45778889999999987654
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=116.06 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc------cccc--CC-----CCCcceeeEeEEEEe----eCCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA------FKAS--AG-----SSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~------~~~~--~~-----~~~~t~~~~~~~~~~----~~~~~~~lvDtpG~~~~ 82 (352)
.+|+++|.+|+|||||++.|++... +... +. ..+++.........+ ..+..+.+|||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3699999999999999999986421 0000 00 001222221111222 12456789999997542
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.. ....++.++|++++|+|++...+..+...+..+.. .+ .|+++|+||+|+... . ..+...
T Consensus 81 -------~~----~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~--~-~~~~~~ 141 (179)
T cd01890 81 -------SY----EVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-NN----LEIIPVINKIDLPSA--D-PERVKQ 141 (179)
T ss_pred -------HH----HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-cC----CCEEEEEECCCCCcC--C-HHHHHH
Confidence 11 22223457899999999986565555544433322 12 289999999998643 1 111112
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
. +...+ +... ......|+.++.++.+|++.+...+
T Consensus 142 ~-----~~~~~---~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 Q-----IEDVL---GLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred H-----HHHHh---CCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2 22222 2110 1123678889999999999887654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=116.52 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+++... ......|. ......+.. ++ ..+.+|||||... +..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~ 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF----SESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRS 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHh
Confidence 3799999999999999999997764 11112222 222223333 33 3467899999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++-+-... .++..+....+.. .|++++.||.|+... ..+.... ...+..
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~ 133 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCD 133 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHH
Confidence 223345689999999999843322221 2334444433322 389999999998744 2211110 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.+++++++.+.+.+.
T Consensus 134 ~~~~~~~------evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 134 SLNIPFF------ETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2222333 4677888999999988777653
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-14 Score=114.81 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|+|||||++.+++..... ....++........+.+.++ ..+.+|||||... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~--~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE--VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 789999999999999999999765411 11111222222222333233 3578999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-.. ..++..+...... ...+++||.||.|+.... ....+. ...+....
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~-~v~~~~--------~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQR-QVTREE--------AEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccccc-ccCHHH--------HHHHHHHh
Confidence 334578899999999984332222 2334444433321 112678889999986531 111111 12233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..++ .+|++++.++.++++.+.+.+.
T Consensus 140 ~~~~~------e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 140 GMKYI------ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 43333 4678889999999998877553
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=115.83 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||++.+.+..... ....|.... ...+.+ ++ ..+.+|||||..+.. .
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~--- 68 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID----EYDPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYS--------A--- 68 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc----CcCCchhhEEEEEEEE-CCEEEEEEEEeCCCCccch--------h---
Confidence 4899999999999999999998765311 111122111 112223 33 346789999965421 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.+++++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.... ...+..
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~ 138 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE--RQVSTGE-------GQELAK 138 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccCHHH-------HHHHHH
Confidence 12224468899999999984333222 233333433322 112389999999997543 1111100 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||.++.++.+++..+.+.+.
T Consensus 139 ~~~~~~~------e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 139 SFGIPFL------ETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred HhCCEEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 2232332 5688889999999998876653
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-14 Score=116.27 Aligned_cols=87 Identities=24% Similarity=0.280 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|+|||||+|.|+|...... .. ...|.......+.+ .+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~-~~-~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA-AY-EFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-CC-CCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 789999999999999999998764211 11 11233333333444 678899999999876432222212222 234
Q ss_pred cCCccEEEEEEecC
Q 018636 101 KDGIHAFLVVFSVT 114 (352)
Q Consensus 101 ~~~~~~~l~v~~~~ 114 (352)
+..+|++++|+|++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 56889999999876
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=117.60 Aligned_cols=113 Identities=22% Similarity=0.172 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+++|..|+|||||++.+++..... ...|....++...+ ....+.+|||||.... ..+ ...
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-----~~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~--------~~l---~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-----TVSTVGGAFYLKQW-GPYNISIWDTAGREQF--------HGL---GSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-----CCCccceEEEEEEe-eEEEEEEEeCCCcccc--------hhh---HHH
Confidence 479999999999999999998766411 11232222222222 3456889999996432 111 222
Q ss_pred ccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
.+.++|++++|+|++++-+-... .++..+........ |++||.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~--piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC--LFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccccc
Confidence 35689999999999854333332 23333333323323 8999999999864
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-15 Score=139.21 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=104.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|+.++|||||++.|.+..... ...+++|.....+.+.+ ++..++||||||..+.. ...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hHH
Confidence 34799999999999999999998765421 12344565565666666 67889999999965531 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+++++.........+..+.. .+- |++|++||+|+...+...+...+.. ..-+...++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~v----PiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AGV----PIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cCC----cEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 223457899999999986666666666655443 232 8999999999864311122222211 111112222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+ ...++||.++.++.+|++.|..
T Consensus 425 ~~v----p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDT----IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCc----eEEEEeCCCCCCchHHHHhhhh
Confidence 222 1235789999999999998864
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=111.78 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
+|+++|.+|+|||||++.+++... ......|.. .....+.. .+ ..+.+|||+|... +...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF----HSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhh
Confidence 799999999999999999987654 111122222 22223333 33 3567899999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|++++-+-.+ ..++..+....... .|+++|.||.|+... ..+ .+. ...+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~~--------~~~~~~ 133 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDEQ--------GNKLAK 133 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH--------HHHHHH
Confidence 3334568899999999984333222 23344443332222 389999999998644 211 111 112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+..|+ ++||+++.++.+++..+.+.
T Consensus 134 ~~~~~~~------e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 134 EYGMDFF------ETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHhh
Confidence 2333332 56888889999999987653
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-14 Score=112.07 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+.+... ......|....+ ..+.. ++ ..+.+|||+|... +..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f----~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF----DEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 3799999999999999999987643 111222332222 23333 33 3568999999432 223
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~~ 173 (352)
....++.++|++++|+|++++-+-.+. .++..+....... .| ++|.||+|+.... ....+..... ...+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a 136 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYA 136 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHH
Confidence 333456789999999999854443332 3445554432222 25 6789999985320 0111111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ ++||+++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~------e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 137 KAMKAPLI------FCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333332 5688899999999998876553
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-14 Score=112.74 Aligned_cols=160 Identities=17% Similarity=0.068 Sum_probs=91.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+++|.+|+|||||++.+++...... . ..+.........+.+ ++ ..+.+|||||. +.+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~-----------~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-L-FHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQ-----------ERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-c-CCceeeEEEEEEEEE-CCeEEEEEEEeCCCh-----------HHHHH
Confidence 448999999999999999999987654111 1 111112221222333 33 35678999993 22333
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+.++|++++|++++++-+-... .++..+...... ....|+++|.||+|+... ....+. ...+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEE--------AQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHH--------HHHH
Confidence 333455788999999998843322222 233333332211 112389999999998643 211111 2233
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
....+...+ ..+|+.++.++.++++.+.+
T Consensus 140 ~~~~~~~~~-----~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDYPY-----FETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCCeE-----EEEECCCCCCHHHHHHHHHh
Confidence 333332222 25678888999999887654
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=112.78 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||+..+..... .. ....|....+ ..+.. ++ ..+.+|||+|.... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~---~~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~-----------~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PT---DYIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDY-----------NRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CC---CCCCcceeeeEEEEEE-CCEEEEEEEEECCCCccc-----------ccc
Confidence 5899999999999999999986543 21 1222322211 12233 33 45689999995432 122
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh--cccCChhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL--GHECPKPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l--~~~~~~~~~~~ 172 (352)
....+.+++++++|+|.+++-+-.. ..++..+....+ .+ |++||.||+|+.... ....... ..-.......+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NV--PIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEEL 141 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHH
Confidence 2335678999999999985555443 246666655433 33 899999999986430 0000000 00000112233
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+...++ .+||+++.++.++++.+.+.+
T Consensus 142 a~~~~~~~~~-----E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGAAAYI-----ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCCCEEE-----ECCCCcccCHHHHHHHHHHHH
Confidence 3333322122 578889999999999887765
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=112.38 Aligned_cols=162 Identities=17% Similarity=0.086 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||+..+.+... +.....|....+ ..+.. ++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC----CCcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hhh
Confidence 6899999999999999999886543 111112221111 12222 33 45679999995331 122
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCChhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECPKPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~~~~~ 170 (352)
....+.++|++++|+|++++-+-... .++..+..... . .|++||.||.|+.... ...+..... .......
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence 23345789999999999843333332 24444444322 2 3999999999986430 112111110 0001122
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+....+.-.+ ..+||+++.++.++++.+.+
T Consensus 142 ~~~~~~~~~~~-----~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKY-----LECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEE-----EEecccccCCHHHHHHHHHH
Confidence 23333332111 26788999999999987654
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=113.89 Aligned_cols=162 Identities=17% Similarity=0.061 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|..|+|||||++.|++... ......+... ........ ....+.+|||||...... ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----------~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF----PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-----------LR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------cc
Confidence 4799999999999999999998764 1111111111 11112221 134578999999664211 11
Q ss_pred hcccCCccEEEEEEecCCCCCH--HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh----cccCChhHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQ--EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHECPKPLKE 171 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l----~~~~~~~~~~ 171 (352)
...+..+|++++|+|.+++-+- ....++..+..... ..|+++|+||+|+... ......+ ..........
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 1233678999999999833222 22234444444322 2399999999998765 2221100 0000001122
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+....+...+ ...|+.++.++.++++.|.+
T Consensus 141 ~~~~~~~~~~-----~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 LAKEIGAIGY-----MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHhCCeEE-----EEeecCCCCCHHHHHHHHhh
Confidence 2233232112 25677888999999987754
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=114.28 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=92.5
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
|+|+|..|+|||||++.+++... ......+....+ ..+.. ++. .+.+|||||..... ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF----PEDYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC----CCCCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhch
Confidence 68999999999999999997654 111122222211 12223 333 47899999954321 1122
Q ss_pred cccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----CChhHHHH
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKEI 172 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~~ 172 (352)
..+.++|++++|+|+++.-+-... .++..+..... ..|+++|.||+|+.... ...+++.... .......+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHH
Confidence 345689999999999843222222 34444544332 23999999999987531 1121111100 00112233
Q ss_pred HHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+. .++ .+|++++.++.++++.+.+.+
T Consensus 141 ~~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 141 AKRIGAVKYL------ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHcCCcEEE------EecCCCCCCHHHHHHHHHHHh
Confidence 333332 332 468888999999999876654
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-14 Score=112.48 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|||||||++.+.+... +.....|.... ...+.+ ++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF----PEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCccccceEEEEEE-CCEEEEEEEEeCCCchhh-----------hhc
Confidence 5899999999999999999997653 11111222211 122233 33 35689999995431 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC-----hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~-----~~~ 169 (352)
....+.++|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+... ....+.+..... ...
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 1234568899999999883322112 223444443322 2 399999999998654 222221111000 011
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+...++...+ ..+||+++.++.++++.+.+.
T Consensus 141 ~~~~~~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGY-----MECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEE-----EEeccccCcCHHHHHHHHHHH
Confidence 222222222112 257888999999999987654
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=114.62 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|..|+|||||++.+++... . .....|....+ ..+.+ ++ ..+.||||+|-. .+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~---~~y~pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e-----------~~ 74 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-P---ETYVPTVFENYTAGLET-EEQRVELSLWDTSGSP-----------YY 74 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-C---CCcCCceeeeeEEEEEE-CCEEEEEEEEeCCCch-----------hh
Confidence 3457999999999999999999987643 2 11222222111 12223 33 457899999932 22
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc---ccCC-h
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HECP-K 167 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~---~~~~-~ 167 (352)
......++.++|++++|+|++++-+-.. ..++..+..... .. |++||.||+|+.... ..+.+... .... .
T Consensus 75 ~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~--piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~ 150 (232)
T cd04174 75 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-ST--RILLIGCKTDLRTDL-STLMELSNQKQAPISYE 150 (232)
T ss_pred HHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccccccc-chhhhhccccCCcCCHH
Confidence 2233345689999999999985444332 345566665433 22 899999999975321 11111000 0000 1
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchH-HHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~ 208 (352)
....+....+. .|+ .+||+++. ++.+++..+...+
T Consensus 151 e~~~~a~~~~~~~~~------EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 151 QGCALAKQLGAEVYL------ECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHHHHcCCCEEE------EccCCcCCcCHHHHHHHHHHHH
Confidence 13334444443 232 56888886 7999999876654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=135.23 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=102.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|+.|+|||||++.|.+..... ...+++|.....+.+.+. .+..+++|||||.. .+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~--~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ--KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc--ccCCccccccceEEEEEEecCCceEEEEEECCcHH-----------HHH
Confidence 34799999999999999999998765421 112334444444444332 35789999999943 233
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
......+..+|++++|+++++.........+..+.. .+ .|+++++||+|+.......+.+.+.. +.-+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VPIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ceEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 333334467899999999986666666666665543 23 29999999999875411122222221 110111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..++.+ ...++||.++.++.+|++.+..+.
T Consensus 380 ~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 122111 123678999999999999887654
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=117.31 Aligned_cols=119 Identities=18% Similarity=0.077 Sum_probs=78.7
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
.+..++++||||..+ ........+.. ..+|++++|+++...+...+...+.++... +. |+++++||
T Consensus 82 ~~~~i~liDtpG~~~-------~~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvvNK 147 (224)
T cd04165 82 SSKLVTFIDLAGHER-------YLKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVVTK 147 (224)
T ss_pred CCcEEEEEECCCcHH-------HHHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEC
Confidence 467899999999432 12222222211 368999999999878888888888887764 43 89999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCc--------------------EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--------------------CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+|.... ..+.+.+.. +...+...+.. ...+-+...+|+.++.|+++|...+..
T Consensus 148 ~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 998765 556555554 44444321111 001113445689999999999988754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=111.99 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|..|+|||||++.+..... +.....|....+. .+.+ ++ ..+.+|||+|... +..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF----PKEYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC----CcCCCCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 37999999999999999999886543 1112223222111 1223 33 4568899999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hhH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~~ 169 (352)
....++.++|++++|+|++++-+-... .++..+..... . .|++||.||.|+.... ...+..... ... ...
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 142 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-N--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQG 142 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHH
Confidence 333456789999999999844433332 23343443322 2 3999999999986431 111111110 000 112
Q ss_pred HHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+....+. .|+ .+||+++.++.+++..+.+.+.
T Consensus 143 ~~~a~~~~~~~~~------e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 143 GALAKQIHAVKYL------ECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHHcCCcEEE------EeCCCCCCCHHHHHHHHHHHHh
Confidence 223333332 233 5688889999999998887653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-14 Score=110.81 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++..... ....++..........+ ...+.+|||||.... ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence 379999999999999999998765411 11111111111111113 245788999995432 1122
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+...+++++|+++++.-+-. -..++..+..... ....|+++|+||+|+.........+ ...+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 22345779999999987322211 1223333333211 1223999999999987521011111 11222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..+ ...|+.++.++.+|++.+.+.+
T Consensus 136 ~~~~------~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 136 GVPY------VETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCeE------EEeeCCCCCCHHHHHHHHHHHH
Confidence 3233 3568888999999999887654
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=111.00 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+++|..|+|||||++.+.+... ......|....+ ..+.+ ++ ..+.+|||+|.. .+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f----~~~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e-----------~~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYTASFEI-DTQRIELSLWDTSGSP-----------YYD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC----CCccCCceeeeeEEEEEE-CCEEEEEEEEECCCch-----------hhH
Confidence 347999999999999999999987653 112222322211 12233 33 357899999942 222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP 168 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~ 168 (352)
.....++.++|++++|+|++++-+-.. ..++..+..... . .|++||.||+|+.... ..+.+.... ... ..
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233445689999999999985544443 245566665443 2 3899999999985321 111110000 000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHH-HHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~ 207 (352)
...+....+. .|+ .+||+++.+ +.+++..+...
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence 2334444443 333 568888998 99999877663
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=121.51 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccC-C-----CCCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-G-----SSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEFV 89 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-~-----~~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~~ 89 (352)
..+|.|+|.+|+|||||||+|++........ . ....+........... ++ ..++|+|||||++.... ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhh
Confidence 3689999999999999999999876543320 0 0111222222222221 22 35789999999985432 222
Q ss_pred HHHHHHHH--------h---------cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 90 GKEIVKCL--------G---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 90 ~~~~~~~~--------~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
...+..++ . .....+|++||+++++ .+++..|...|+.+... + |+|-|+.|.|.++
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccC
Confidence 33332222 1 1124679999999987 67888888776665443 3 8999999999998
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
. +.+..+... +...+...+-+++.|...
T Consensus 157 ~--~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 P--EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred H--HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 7 888877666 777777777776665543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-14 Score=115.45 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|.+|+|||||++.+++.... .....|. ......+.+ .+ ..+.++||||.... ..+ .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~--------~~~---~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE----PKYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF--------PAM---R 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC----ccCCCchhhheeEEEEE-CCEEEEEEEEECCCchhh--------hHH---H
Confidence 5899999999999999999876541 1111121 112222333 33 46789999995442 111 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH-h
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-L 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~ 175 (352)
...+.++|++++|+|+++..+-... .++..+..... ....|+++|+||+|..... ..+... . ...... .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~~-~------~~~~~~~~ 135 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPAK-D------ALSTVELD 135 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccHH-H------HHHHHHhh
Confidence 2245688999999998843222222 22233333322 1224999999999986521 111100 0 011111 1
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ ..|+.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFV------ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEE------EecCCCCCCHHHHHHHHHHHhh
Confidence 111222 4688889999999999887664
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-14 Score=111.01 Aligned_cols=117 Identities=20% Similarity=0.146 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|++|+|||||++.+++... +.....+. ......+.+ ++ ..+.+|||||.... ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------~~~--- 67 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF----PERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERF-------RKS--- 67 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC----CCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHH-------HHh---
Confidence 6899999999999999999987653 11112222 222222333 33 46789999994321 111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.....+.++|++++|+|++++-+-... .++..+..... ....|+++|.||+|+...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ 124 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh
Confidence 123345688999999999844443333 33334443221 122399999999998644
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-14 Score=114.76 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||++.|++...... ...++........+.+ ++ ..+.+|||+|... +...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 37999999999999999999997654111 1111111211222233 33 3567999999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|+++.-+-... .++..+....... .|+++|.||+|+........++ ...+...
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTEE---------GEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHHH---------HHHHHHH
Confidence 22334678999999999833222222 3344343333222 3899999999986531011111 1122222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+|++++.++.+++..+.+.+
T Consensus 141 ~~~~~~------e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 HGLIFM------EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 232222 457778889999887665443
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=110.52 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+... +.....|....+ ..+.+ ++ ..+.+|||+|... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY----PETYVPTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC----CCCcCCceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 5899999999999999999987653 112222322211 12233 33 3567999999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~~~ 170 (352)
....+.++|++++|+|++++-+-.. ..++..+..... .. |++||.||+|+.... ..+.+.-.. ... ....
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~--~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NT--KVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CC--CEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3345679999999999985544433 345666665543 23 899999999985321 111110000 000 1122
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHH-HHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~ 207 (352)
.+....+...++ .+||+++.+ +.+++..+.+.
T Consensus 142 ~~a~~~~~~~~~-----E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYL-----ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEE-----ECccCcCCcCHHHHHHHHHHH
Confidence 333333321222 568888885 99999877663
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-14 Score=114.77 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|..|+|||||++.|++..... . ..+.........+.+.+ ...+.|+||||.... ....
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVED--L-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-----------RTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--c-CCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----------HHHH
Confidence 4799999999999999999999865411 1 11112222223333312 246789999995431 1112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHH--HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+..+|++++|+|.+++-+-.... +...+.. +......|+++|.||+|+... ..+... ....+...
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~-------~~~~~~~~ 149 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSRE-------EGMALAKE 149 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHH-------HHHHHHHH
Confidence 23346889999999998433222221 2222222 221112378999999998644 221100 01112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..+ .++|+.++.+++++++.+...+..
T Consensus 150 ~~~~~------~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 150 HGCLF------LECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cCCEE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22222 256788889999999988876643
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-14 Score=110.97 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+... ......+..... ..+.+ ++ ..+.+|||||...... .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF----PEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------L 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------c
Confidence 3799999999999999999987654 111222222111 12223 33 3467899999654211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~~~ 169 (352)
....+.++|++++|++.+++-+-... .++..+... ... .|+++|.||+|+... ......+.. ... ...
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHH
Confidence 12345688999999998843332222 344444433 222 389999999998644 111111100 000 011
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+....+...++ .+||.++.+++++++.+...
T Consensus 140 ~~~~~~~~~~~~~-----e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 140 QKLAKEIGAHCYV-----ECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHHcCCCEEE-----EecCCcCCCHHHHHHHHHHH
Confidence 2233333332222 56888999999999877654
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-14 Score=113.04 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC-CcccccC-------------CCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
.+|+++|..|+|||||++.|++. ..+.... ...+.+.......+.+ .+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 58999999999999999999863 1211110 0011222223333334 577889999999643
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+......++.++|++++|+|+++.........+..+.. .+ .|+++++||+|+...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-~~----~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-LG----LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence 22223334468899999999985443433333333322 12 289999999998643
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-15 Score=120.53 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|++||.+|+|||||+|+|+.... ....+..|+ ...+..+.+.+...++|.|.||+......+.-+...+.+.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3689999999999999999997654 233444443 445555555445569999999999877666666777766655
Q ss_pred cccCCccEEEEEEecCCCC--CH-HHHHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVTNRF--SQ-EEETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--~~-~~~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.+..++||+|++... +. .+...|..-.+++.+ -..+|.+||.||+|..+.....|+ .+..
T Consensus 274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~------------~L~~ 337 (366)
T KOG1489|consen 274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLS------------SLAK 337 (366)
T ss_pred ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHH------------HHHH
Confidence 678999999998331 22 222222222222222 233489999999998643111112 2333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..... ++.+.||+++.++.+|++.+..
T Consensus 338 ~lq~~-----~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNP-----HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCC-----cEEEeeeccccchHHHHHHHhh
Confidence 33333 2347788899999999987654
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=112.19 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+++...... ...|. ......+.. ++. .+.+|||||..... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK----YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------ch
Confidence 6899999999999999988886654211 11121 111222333 333 46789999954321 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-.+ ..++..+..... ....|+++|.||+|+... ..+.... ...+...
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 135 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE 135 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence 1223467899999999984333222 233444444322 122389999999998643 1111100 1112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+..+ .++||.++.++.+++..+.+
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 136 WGCPF------METSAKSKTMVNELFAEIVR 160 (163)
T ss_pred hCCEE------EEecCCCCCCHHHHHHHHHH
Confidence 22222 25688888999999987754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=115.40 Aligned_cols=160 Identities=21% Similarity=0.143 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcc-cccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|+|||||++.+++.... ......+. .......+.+. ....+.+|||||... . +..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~--~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~~-- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD--DDTYERTVSVDGEESTLVVIDHWEQEM------W----TED-- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc--ccceEEEEEECCEEEEEEEEeCCCcch------H----HHh--
Confidence 37999999999999999999755431 11111111 01112222221 235678999999651 0 111
Q ss_pred hcccC-CccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+. ++|++++|+|++++-+-.. ..++..+.... .....|+++|.||+|+... ..+... . ...+...
T Consensus 67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~--~~v~~~--~-----~~~~a~~ 135 (221)
T cd04148 67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS--REVSVQ--E-----GRACAVV 135 (221)
T ss_pred -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc--ceecHH--H-----HHHHHHH
Confidence 1123 7899999999984332221 23334343321 1122399999999998654 211100 0 1122222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ ++||.++.++.++++.+...+..
T Consensus 136 ~~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 136 FDCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 233333 56888899999999998877653
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=111.02 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||++.+++... . .....|.. ........ .+ ..+.+|||||... +...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~ 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V---ESYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSIL 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c---cccCcchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHH
Confidence 6899999999999999999997653 1 11111111 11122222 32 3567999999543 1111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..++++++|++.++.-+-... .++..+....+ ....|++++.||+|.... ..+... ....+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (180)
T cd04137 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAES 135 (180)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHH
Confidence 22234578999999998832222221 22233333222 112389999999998643 111110 01222233
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ +.|+.++.++.+++..+.+.+..
T Consensus 136 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 136 WGAAFL------ESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 332222 46778889999999998877654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=109.76 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+++|+.|+|||||++.+++... .. ....+... ....+.. + ...+.++|+||... +....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VE---EYDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Cc---CcCCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 589999999999999999997753 22 22222221 1222223 3 24578999999543 11122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+...|++++|++.++.-+..+ ..++..+..... ....|++++.||+|.........+ . ...+....
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 134 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKE-E--------GKALAKEW 134 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHH-H--------HHHHHHHc
Confidence 223457899999999873322222 223333333333 112399999999998753101111 1 22222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+..+ ...|+.++.++.++++.+.+
T Consensus 135 ~~~~------~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 135 GCPF------IETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCcE------EEeccCCCCCHHHHHHHHHh
Confidence 3222 25677788999999988764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=125.06 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=89.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccccc--------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||+++|++....... ....+.|.......+.. ++..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH--
Confidence 45689999999999999999999875221000 00123344443333333 56788999999942
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHh
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l 161 (352)
.+...+..+...+|++++|+|+...+...+...+..+... +. | +++++||+|+.+. ..+.+.+
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~----~~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV----PNIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEEccCCCCH--HHHHHHH
Confidence 2333333344578999999999877888888877776653 43 5 7788999999864 3333333
Q ss_pred cccCChhHHHHHHhcC
Q 018636 162 GHECPKPLKEILQLCD 177 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~ 177 (352)
.. .+..++..++
T Consensus 151 ~~----~l~~~l~~~~ 162 (409)
T CHL00071 151 EL----EVRELLSKYD 162 (409)
T ss_pred HH----HHHHHHHHhC
Confidence 22 2555555543
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=115.12 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|..|+|||||++.+++... .. ....|.. .....+.+ ++ ..+.||||+|.... ..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~---~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~--------~~~--- 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EE---QYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF--------PAM--- 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CC---CCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhh--------hHH---
Confidence 3799999999999999999986543 11 1122221 12222333 33 45679999995431 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-------cccccceEEEEEeCCCCCCcchhcHHHHhcccCChh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-------GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~-------~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (352)
...++..+|++++|+|++++-+-.. ..++..+.... ......|+++|.||+|+........++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e--------- 135 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE--------- 135 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence 1223457899999999984333222 22333333220 011234999999999986421011121
Q ss_pred HHHHHHhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++... ...++ .+||.++.++++|++.+..+.
T Consensus 136 i~~~~~~~~~~~~~------evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 136 VEQLVGGDENCAYF------EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHhcCCCEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence 22222211 11222 568888999999999988765
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=129.41 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=97.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cC---------------CCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA---------------GSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.++|||||++.|++....-. +. ...+.|.......+.+ ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 458999999999999999999984322100 00 0233455555555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
..+.+|||||..+. ... +......+|++++|+|+++ .+.......+.++.. ++. .++++++||
T Consensus 84 ~~i~liDtpG~~~~-------~~~----~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviNK 148 (425)
T PRK12317 84 YYFTIVDCPGHRDF-------VKN----MITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAINK 148 (425)
T ss_pred eEEEEEECCCcccc-------hhh----HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEEc
Confidence 88999999995432 111 1222357899999999986 555555555555543 342 268999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+|+.......+...... +..++...+.... .....++|+.++.++.+
T Consensus 149 ~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPD-DIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccHHHHHHHHHH-----HHHHHHhhCCCcC-cceEEEeecccCCCccc
Confidence 99875311233333333 4445544332100 00123567777888775
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=110.06 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||++.+++...... ....+.........+.+ ++ ..+.++||+|..... ..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLN-AYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------LL 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcc-cCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------cc
Confidence 47999999999999999999998764101 11111112222223333 33 356788999854321 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++.++|++++|+|++++-+- .....++..... ....|+++|.||+|+... ... .... ...+....
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~~~~ 138 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSF--SYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFCRKL 138 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhcc-CCCCeEEEEEEccccccc--ccc--cccC-----HHHHHHHc
Confidence 12234689999999999733211 111222222211 112399999999998643 110 0000 12222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.. .....||.++.++.++++.+.+.+.
T Consensus 139 ~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 139 GLP-----PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCC-----CCEEEEeccCccHHHHHHHHHHHhh
Confidence 211 1135688889999999998877653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=111.76 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|||..|+|||||++.+++... +.....|....+ ..+.+ ++ ..+.+|||+|.. .+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f----~~~y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e-----------~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY----PGSYVPTVFENYTASFEI-DKRRIELNMWDTSGSS-----------YYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCccCCccccceEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHH
Confidence 6899999999999999999987653 112222222111 12233 33 356789999943 23333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc---CC-hhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---CP-KPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~---~~-~~~~ 170 (352)
...++.++|++++|+|++++-+-... .+...+.... ..+ |++||.||+|+.... ..+...-... .. ..-.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~--piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNA--KVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCC--CEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 34467899999999999844332222 2333333332 223 899999999986431 1111110000 00 1122
Q ss_pred HHHHhcCC-cEEEEcCCCcccccchH-HHHHHHHHHHHH
Q 018636 171 EILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSV 207 (352)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~ 207 (352)
.+....+. .|+ .+||.++. ++.+++......
T Consensus 142 ~~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVGAVSYV------ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHH
Confidence 33334443 343 45777666 499988876554
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=123.49 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC------cccc--------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK------AFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+..+|+++|+.++|||||+++|++.. .+.. .....+.|.......+.. ++..++++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA--- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH---
Confidence 45899999999999999999998621 1000 001223444443333333 56788999999942
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE-EEEEeCCCCCCcchhcHHHHhc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.+...+......+|++++|+|+...........+..+.. .+. |. ++++||+|+.+. ..+.+.+.
T Consensus 87 --------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~~~ 151 (396)
T PRK12735 87 --------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELVE 151 (396)
T ss_pred --------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHHHH
Confidence 333334444568899999999986677776666666554 343 54 467999999753 33322222
Q ss_pred ccCChhHHHHHHhcCC---cEEEEcCCCcccccch----------HHHHHHHHHHHHHHH
Q 018636 163 HECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV 209 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~----------~~~~~L~~~i~~~~~ 209 (352)
. .+..++..++. .+.+ .+.|+.++ .++..|++.+...++
T Consensus 152 ~----ei~~~l~~~~~~~~~~~i----i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 152 M----EVRELLSKYDFPGDDTPI----IRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred H----HHHHHHHHcCCCcCceeE----EecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1 15555555432 1211 23444444 356788888877653
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=107.76 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||+|.|++.. +..... .+.+.......+.. ++ ..+.+|||||..+.. .+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~~~----- 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AIRRL----- 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HHHHH-----
Confidence 689999999999999999999887 332221 12233333322333 55 667899999954321 11111
Q ss_pred hcccCCccEEEEEEecCCC---CCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++.+++++|.... +.......+..+...... ..|+++++||+|.... .... . ....+.
T Consensus 70 --~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~~~~-~--------~~~~~~ 134 (161)
T TIGR00231 70 --YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--KLKT-H--------VAFLFA 134 (161)
T ss_pred --HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--hhhH-H--------HHHHHh
Confidence 11244555555555412 112222333333333221 2389999999999765 2111 1 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
..+... ..+.|+..+.++.++++.+.
T Consensus 135 ~~~~~~-----~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEP-----IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCc-----eEEeecCCCCCHHHHHHHhh
Confidence 322221 23667888899999988763
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-14 Score=112.11 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|..|||||||++.|......... .|.......+.+ .+..+.++|.+|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~-----pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETI-----PTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE-----EESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccC-----cccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 45689999999999999999999876542222 234444555555 788899999999322 2223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~ 173 (352)
...++.++|+++||+|.++.-. -. .....+..++... ...|++|++||.|.... ....+.+.+.- .. +
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~-l~-e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~-l 145 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPER-LQ-EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EK-L 145 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGG-HH-HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GG-T
T ss_pred ceeeccccceeEEEEeccccee-ec-ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hh-c
Confidence 4455678999999999882211 11 1112222322221 12499999999998765 11233333221 11 1
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
. ...++.++ .+|+.++.|+.+.++++.+.
T Consensus 146 ~-~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 K-NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp T-SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred c-cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 0 12344442 45778899999999988754
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-13 Score=107.55 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++..... ....|.... ...+.+.. ...+.+|||||..... ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE----SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch-----------hhh
Confidence 589999999999999999998665411 111122111 12222311 2466899999965421 122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.+++++++|++.+++-+-.. ..+...+..... ....|++++.||.|.........++ ...+....
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence 223457899999999883322222 223343433322 1123899999999986441011111 11122222
Q ss_pred C-CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+ ..++ .+||+++.++.++++.+...
T Consensus 137 ~~~~~~------~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFY------ETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEE------EeeCCCCCCHHHHHHHHHHH
Confidence 3 1222 46888899999999887653
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=111.49 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=101.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc-----cCCCCCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcH--H
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE--F 88 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~--~ 88 (352)
..++.++|.+|.|||||||+|++...... .......|.........+. +| -.++|+|||||+|.-.... .
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 37899999999999999999998744211 1111112333333333321 23 3568999999998543221 1
Q ss_pred -----HHHHHHHHHh---------cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 89 -----VGKEIVKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 89 -----~~~~~~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
+..++..++. .....+|++||.+.+. +.+..-|...++.+.. .+ |+|-|+.|.|.++.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~----~v--NiIPVI~KaD~lT~- 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK----KV--NLIPVIAKADTLTK- 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc----cc--cccceeeccccCCH-
Confidence 1222333321 1123789999999887 5688888777665543 23 89999999999988
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
..+..+... +...+..+.-+++.|...
T Consensus 174 -~El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 -DELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred -HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 888877776 777777777777766554
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=111.35 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|++|+|||||++.|+.... .. ....|....+ ..+.. ++ ..+.++||+|...... +
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~--- 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PE---EYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------L--- 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------c---
Confidence 5899999999999999999984433 11 1111221111 12222 33 3467899999643211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc-ccCC-hhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG-HECP-KPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~-~~~~-~~~~~~ 172 (352)
....+..+|++++++++++.-+-.. ..++..+..... . .|+++|.||+|+.... ...+.... .... .....+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1113467899999999873322222 235555554433 2 3999999999975421 01100000 0000 011222
Q ss_pred HHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+. .|+ .+||+++.+++++++.+.+.+.
T Consensus 142 ~~~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 142 AKEIGAKKYM------ECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred HHHhCCcEEE------EccCCCCCCHHHHHHHHHHHHh
Confidence 233332 232 5688999999999998876553
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=121.23 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||+++|++...-.. .....+.|.......+.. ++..+.++||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH--
Confidence 3458999999999999999999986321000 001223444443333333 56788999999932
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHh
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l 161 (352)
++...+......+|++++|+|+...+...+...+.++... +. | +++++||+|+.+. ..+.+.+
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~----~~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV----PYLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CEEEEEEEecCCcch--HHHHHHH
Confidence 2333333334578999999999877777777777776654 43 5 6788999998744 3333333
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccch--------HHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~--------~~~~~L~~~i~~~~~ 209 (352)
.. .+..++...+...- ..+..+.|+.++ .++..|++.+...++
T Consensus 151 ~~----~i~~~l~~~~~~~~-~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EM----EVRELLSEYDFPGD-DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHhCCCcC-CccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 25555544432100 011224555554 257788888877764
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=99.20 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=103.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|.++|..|+||||+++.+.|... .....|...++....+ ++..+.++|.-| ...+..+.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGG-----------q~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGG-----------QKTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCC-----------cchhHHHH
Confidence 458999999999999999999999875 3344566777777777 889999999999 45566777
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
..+|...|++++|+|.+++..-.+. ...++.++... +..+++++.||.|..+. ..+.+...+. +..+..
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~--~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~------L~~l~k 149 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQEC--KQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALD------LEELAK 149 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHH--HHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhC------HHHhcc
Confidence 7788899999999998733322221 11222222111 12389999999999855 2233332222 555555
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.++.+.+. +|+.++.++.+=++++.
T Consensus 150 s~~~~l~~------cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 150 SHHWRLVK------CSAVTGEDLLEGIDWLC 174 (185)
T ss_pred ccCceEEE------EeccccccHHHHHHHHH
Confidence 55655553 45556644444444443
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=110.46 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
++|+++|..|+|||||++.+.+... . .....|.. .....+.. ++ ..+.+|||||.... ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-P---TEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEF-----------DKL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C---CCCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhh-----------ccc
Confidence 4799999999999999999986543 1 11222221 11112233 33 35678999996432 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----CChhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~~~~~~ 170 (352)
....+.++|++++|+|++++-+-.. ..++..+..... . .|++++.||+|+.... ..+....... ......
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAK 140 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHH
Confidence 2234578999999999984433322 234555544322 2 3899999999986431 1111111000 000122
Q ss_pred HHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+....+. .++ ++||+++.++.++++.+.
T Consensus 141 ~~a~~~~~~~~~------e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 141 ALAEKIGACEYI------ECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhCCCeEE------EEeCCCCCCHHHHHHHHH
Confidence 22333232 222 568888999999988653
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=106.57 Aligned_cols=159 Identities=23% Similarity=0.240 Sum_probs=100.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE--EeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+|+|..|+|||||+-...-... .. ....|+...+... .. ++ ..+.||||.| .+++.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e---~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAG-----------QERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF-HE---NIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAG-----------QERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc-cc---ccccccccEEEEEEEEe-CCcEEEEEEEEcCC-----------ccccc
Confidence 47999999999999999876653332 22 1112332222222 22 33 4556999999 44455
Q ss_pred HHHhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+|+++++.|+|+|+++.-| ...+.|+..++...++++ .+.|+.||+|+...-....++ .....
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yA 137 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYA 137 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHH
Confidence 666788999999999999993222 223457777777656433 444578999998641112222 22222
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..+--++ .+||+++.++.+|+..|.+.++.
T Consensus 138 e~~gll~~------ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 138 ESQGLLFF------ETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HhcCCEEE------EEecccccCHHHHHHHHHHhccC
Confidence 33233333 57899999999999999888765
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=104.76 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=109.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
+.+...+|+++|.+|+|||.|+-.+..... .. ....++..+.....+.. ++. .+.+|||.| .+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f-~~-~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaG-----------Qer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF-NT-SFISTIGIDFKIKTIEL-DGKKIKLQIWDTAG-----------QER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC-cC-CccceEEEEEEEEEEEe-CCeEEEEEEEEccc-----------chh
Confidence 345568999999999999999999885543 21 11122233444445555 444 457899999 455
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
+......+|.+++++++|+|+++..+ .....|++.+.+.-...+ +.+||.||+|+... ..+.. +.-..
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~-------e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSK-------ERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccH-------HHHHH
Confidence 66666777889999999999984444 344558888888766555 89999999998864 11110 11233
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+....+-.++ .+||+++.++.+.+-.+.+.+
T Consensus 143 lA~e~G~~F~------EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 143 LAREYGIKFF------ETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred HHHHhCCeEE------EccccCCCCHHHHHHHHHHHH
Confidence 4444444444 578888999998877665544
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=108.93 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|.+|+|||||++.+++... . .....+. ........+ ++. .+.+|||||...... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~~--- 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-I---GEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT------EQLE--- 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-c---cccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc------chHH---
Confidence 589999999999999999876433 1 1111111 111122223 333 467999999764110 0111
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|+++.-+-.. ..++..+..........|+++|.||+|+... ..+... ....+....
T Consensus 67 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~ 136 (165)
T cd04146 67 -RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASEL 136 (165)
T ss_pred -HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHc
Confidence 12347899999999984333222 2234444443210112389999999997533 111100 012223333
Q ss_pred CCcEEEEcCCCcccccch-HHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~-~~~~~L~~~i~~~~ 208 (352)
+..|+ ..|+.++ .++.+++..+.+.+
T Consensus 137 ~~~~~------e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 137 GCLFF------EVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCEEE------EeCCCCCchhHHHHHHHHHHHH
Confidence 33333 4566677 58999998876643
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=127.05 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----------------CCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~lvDtpG~~~~ 82 (352)
..|+++|+.++|||||+|.|.+..... ...+++|.......+... ....+++|||||...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 589999999999999999999875421 122333332222222110 012478999999533
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+.......+..+|++++|+|+++.++......+..+... +. |+++++||+|+..
T Consensus 82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~v----piIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-KT----PFVVAANKIDRIP 135 (590)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-CC----CEEEEEECCCccc
Confidence 222222344689999999999876777776666665442 32 8999999999863
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=115.37 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHhh---CCCcccc-------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+|+++|+.|+|||||+++|+ |...... .....++|.......+.+ .+..+++|||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 48999999999999999996 3211000 011223455555566666 7889999999996542
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
... ...++..+|++++|+|+...+...+...+..+... +. |+++++||+|....
T Consensus 78 -----~~~----~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIE----VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHH----HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 222 22344577999999999877777777777666542 43 89999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=108.29 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=92.0
Q ss_pred EcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 25 vG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
||..|||||||++.++.... ......|....+. .+.+. ....+.||||+|... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f----~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 69999999999999985443 1122223332222 22221 135678999999432 333333456
Q ss_pred CCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
.+++++++|+|++++.+-... .++..+..... .+ |++||.||+|+... ....+.+ .+....+..|
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~--piilvgNK~Dl~~~--~v~~~~~---------~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NI--PIVLCGNKVDVKDR--KVKAKSI---------TFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CC--CEEEEEECcccccc--cCCHHHH---------HHHHHcCCEE
Confidence 789999999999854443322 35555555432 23 99999999998543 2111111 1222223333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+ .+||+++.++.+++.++...+..
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 56888899999999999876643
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=121.18 Aligned_cols=178 Identities=14% Similarity=0.071 Sum_probs=106.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..++.|+|+|++|+|||||+|+|+..+..- .++.+.|+...+......+|.+++++||.|+-... ...+...-...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI--VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~--~~~iE~~gI~r 341 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI--VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES--NDGIEALGIER 341 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceE--eCCCCCcchhhheeEeecCCeEEEEEecccccccc--CChhHHHhHHH
Confidence 345899999999999999999999988733 34444455443333333489999999999998722 11111212222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH---hhccc----ccceEEEEEeCCCCCCc-chhcHHHHhcccCChh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN---LFGKN----VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKP 168 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~---~~~~~----~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~ 168 (352)
.......+|++++|+|+....+..+....+.+.. .+... ...+++++.||.|+... +..... ... +
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~--~~~----~ 415 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI--PVV----Y 415 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC--cee----c
Confidence 2334468899999999954444444443333322 22111 12488999999998765 100000 000 0
Q ss_pred HHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
... ..+.. |......++.++.++..|.+.+...+..
T Consensus 416 ~~~---~~~~~---~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 416 PSA---EGRSV---FPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ccc---ccCcc---cceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 110 00111 1222346778899999999988877654
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=102.59 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
-++|.++|.+|+|||||+|.+....... ....++........+.+ +++ .+.||||.| .+.+.+.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~--qykaTIgadFltKev~V-d~~~vtlQiWDTAG-----------QERFqsL 74 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQ--QYKATIGADFLTKEVQV-DDRSVTLQIWDTAG-----------QERFQSL 74 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHH--HhccccchhheeeEEEE-cCeEEEEEEEeccc-----------HHHhhhc
Confidence 3799999999999999999998765411 11112222222333334 444 446899999 5666666
Q ss_pred HhcccCCccEEEEEEecCCC--CCHHHHHHHHHHHHhhccc-ccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNR--FSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~ 172 (352)
-...|+++|++++|++++.. +...+..+-+++...-..+ -.-|+||+.||+|..... +..-. . ..++.
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~---~-----~Aq~W 146 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSE---K-----KAQTW 146 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeH---H-----HHHHH
Confidence 66778999999999998833 3333334444444433222 334999999999997531 01111 1 13334
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..-++-.++ .+||+...++.+.++.+....-.
T Consensus 147 C~s~gnipyf-----EtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 147 CKSKGNIPYF-----ETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HHhcCCceeE-----EecccccccHHHHHHHHHHHHHh
Confidence 4443333332 46778888999988877665433
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-14 Score=127.14 Aligned_cols=166 Identities=11% Similarity=0.074 Sum_probs=98.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCC-----------------CCCcceeeEe
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG-----------------SSGVTKTCEM 60 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~-----------------~~~~t~~~~~ 60 (352)
..+......+|+++|+.++|||||++.|+....... +.. ..++|.....
T Consensus 20 ~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~ 99 (474)
T PRK05124 20 HAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY 99 (474)
T ss_pred hhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE
Confidence 333345668999999999999999999874432100 000 1223445544
Q ss_pred EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE
Q 018636 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 61 ~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
..+.+ ++..+.++||||..+ ....+ ......+|++++|+|+...+...+...+..+.. ++. .++
T Consensus 100 ~~~~~-~~~~i~~iDTPGh~~-------f~~~~----~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~i 163 (474)
T PRK05124 100 RYFST-EKRKFIIADTPGHEQ-------YTRNM----ATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHL 163 (474)
T ss_pred EEecc-CCcEEEEEECCCcHH-------HHHHH----HHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---Cce
Confidence 44444 677899999999422 12222 223368899999999986665555544444433 342 278
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
++++||+|....+...+++.... +..++..++. .......+.|+.++.++..+
T Consensus 164 IvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 164 VVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPG--NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEEEEeeccccchhHHHHHHHHH-----HHHHHHhcCC--CCCceEEEEEeecCCCcccc
Confidence 99999999874322344444443 4444443331 01122346677777777654
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=105.10 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee--EeEEEEee------CCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~------~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
.+|+++|.+|+|||||++.+++.... .....|..+ ....+.+. ....+.+|||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~----~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~---------- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVL----GRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----CCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------
Confidence 37999999999999999999977541 112223322 22222321 123578999999432
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhc-----------------ccccceEEEEEeCCCCCCcc
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~-----------------~~~~~~~ilv~nk~D~~~~~ 153 (352)
+.......+.++|++++|+|++++-+-... .|+..+....+ .....|++||.||+|+...-
T Consensus 67 -~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 67 -VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 233334456799999999999855443333 35555543210 01123999999999986430
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
...-+..+.. .+.+...++......+..
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~ 173 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCT 173 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecC
Confidence 0111222222 344556677766665544
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=122.23 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC------Ccccc--------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR------KAFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~------~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||++.|++. ..... .....+.|.......+.. ++..++++||||..+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc-
Confidence 34589999999999999999999743 11000 001133455554444444 567899999999743
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~ 152 (352)
....+.. ....+|++++|+|+...+...++..+.++... +. | +++++||+|+.+.
T Consensus 137 ------f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~ 192 (447)
T PLN03127 137 ------YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD 192 (447)
T ss_pred ------hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH
Confidence 1222222 22368999999999877777777777776653 43 5 5788999999854
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=122.62 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEE--------------e-----------eCCceE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTV--------------L-----------KDGQVV 71 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (352)
...+|+++|..++|||||++.|++....... ....+.|....+..+. . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3479999999999999999999875321000 0011122222111100 0 014678
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
+++||||. +.+...+......+|++++|+|+++.. .......+..+.. ++- .++++++||+|+.
T Consensus 83 ~liDtPGh-----------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGH-----------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCH-----------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 99999993 223333333345789999999998554 4555555555433 332 2789999999998
Q ss_pred CcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. +...+.... +..++...... .....+.|+.++.++.+|++.+...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAE---NAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccC---CCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 65 333322222 33333221000 011246788899999999999988654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-13 Score=112.13 Aligned_cols=168 Identities=19% Similarity=0.202 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-|++||-+++||||||+.++.... ....+..|+-. ....+....+..+++.|.||+........-+..++.+.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH-
Confidence 478999999999999999997653 23445555433 3333333357779999999998866555556666666665
Q ss_pred ccCCccEEEEEEecCCCCC----HHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 100 AKDGIHAFLVVFSVTNRFS----QEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~----~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.+.++++|+|++ +.. ..+.. ....+...-..-..+|.+||+||+|.... .+.++.+... +..
T Consensus 237 ---Rt~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~--------l~~ 303 (369)
T COG0536 237 ---RTRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKA--------LAE 303 (369)
T ss_pred ---hhheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHH--------HHH
Confidence 567899999988 332 23333 33333332222234599999999995533 1444433332 223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.++...+.+ .|+.++.++++|+..+.+++..
T Consensus 304 ~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 ALGWEVFYL-----ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred hcCCCccee-----eehhcccCHHHHHHHHHHHHHH
Confidence 333332221 5788889999999998888765
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-13 Score=97.18 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|++||..|+|||.|++..+.... +.+. ..++.+..-+..+.+ ++. .+.+|||.| .+.+....
T Consensus 8 fkivlvgnagvgktclvrrftqglf-ppgq-gatigvdfmiktvev-~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLF-PPGQ-GATIGVDFMIKTVEV-NGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCC-CCCC-CceeeeeEEEEEEEE-CCeEEEEEEeeccc-----------hHHHHHHH
Confidence 5899999999999999999986654 2211 112334445555665 443 568999999 66777777
Q ss_pred hcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
.++|..+|++++|.|++...+ .-.-.||..+.......+ --|+|.||.|+.+. ..+.+.+.+ -....
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qige--------efs~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGE--------EFSEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHH--------HHHHh
Confidence 788899999999999983333 333467777777655433 45677899998865 444433322 22222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+..|+. .+||+...++..|+..+.-
T Consensus 142 qdmyfl-----etsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 142 QDMYFL-----ETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhh-----hhcccchhhHHHHHHHHHH
Confidence 444554 5577777888888776543
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=98.85 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|||.+|+|||||+-....... .. ..+.++.++..+....+ +| ..+.||||.| .+.++..
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~f-d~-~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAG-----------qErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTF-DD-LHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAG-----------QERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhccc-Cc-cCCceeeeeEEEEEEEE-cCceEEEEEEeccc-----------hHhhhcc
Confidence 47999999999999999988875443 22 12222344555555555 44 4678999999 5667777
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..++|+++.++++|+|++.+-+-... .|+..+...+-. ..--.++|.||+|.... ..+ .+ .-.--+..
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~--R~V----~r----eEG~kfAr 145 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESE--RVV----DR----EEGLKFAR 145 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhc--ccc----cH----HHHHHHHH
Confidence 77888999999999999844332222 244444433222 11123466899997643 111 11 00001111
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.++..++ ..||++..++...++.+..-
T Consensus 146 -~h~~LFi----E~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 146 -KHRCLFI----ECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred -hhCcEEE----EcchhhhccHHHHHHHHHHH
Confidence 2223322 45778888888777655443
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=105.32 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++... ..... .+.......+.+ ++ ..+.++||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f-~~~~~---~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~--------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY-VQLES---PEGGRFKKEVLV-DGQSHLLLIRDEGGAPDA--------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC-CCCCC---CCccceEEEEEE-CCEEEEEEEEECCCCCch---------------
Confidence 3799999999999999987765432 11111 111111122333 44 34778999996420
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|.+++-+-.. ..++..+..... ....|+++|.||.|+.......+.... ...+....
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~ 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence 12246899999999995544444 345555554322 112389999999987431001111110 11222222
Q ss_pred C-CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+ ..|+ .+||+++.++.+++..+.+
T Consensus 132 ~~~~~~------e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYY------ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCcEE------EEecCCCCCHHHHHHHHHh
Confidence 2 2232 5688999999999987653
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-13 Score=119.36 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||++.|++...-.. .....+.|.......+.. ++..+.++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence 3458999999999999999999987321000 000223444444333333 56788999999942
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEE-EEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-lv~nk~D~~~~ 152 (352)
.+...+......+|++++|+|+...+...+...+.++... +. |.+ +++||+|....
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch
Confidence 3333344445689999999999877777777777776653 43 655 67999999753
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=112.83 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=66.6
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
+........+|+|||.+++|||||||.|+|... .......|+-..+.....++|-.+.++|+||+.........-+.
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~ 132 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGR 132 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcc
Confidence 334444558999999999999999999998763 24455566655565555558999999999999765433322122
Q ss_pred HHHHHHhcccCCccEEEEEEecC
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
++ ......+|++++|+|+.
T Consensus 133 ~v----lsv~R~ADlIiiVld~~ 151 (365)
T COG1163 133 QV----LSVARNADLIIIVLDVF 151 (365)
T ss_pred ee----eeeeccCCEEEEEEecC
Confidence 22 22335778888888764
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=112.48 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccc--c-CC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKA--S-AG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~--~-~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+|+++|+.|+|||||+++|+....... + .. ....+.......+.+ ++..+++|||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 489999999999999999975321000 0 00 111222333444455 6889999999998652
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..... .++..+|++++|+++...........+..+.. .+. |+++++||+|....
T Consensus 78 -----~~~~~----~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~~----P~iivvNK~D~~~a 131 (237)
T cd04168 78 -----IAEVE----RSLSVLDGAILVISAVEGVQAQTRILWRLLRK-LNI----PTIIFVNKIDRAGA 131 (237)
T ss_pred -----HHHHH----HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccccCC
Confidence 12222 23357799999999987777666666666554 243 89999999998754
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-13 Score=120.47 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=98.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccc-ccCCCCCcceeeEeEEEEe--------------e---C--------Cce
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL--------------K---D--------GQV 70 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~--------------~---~--------~~~ 70 (352)
....+|+++|+.|+|||||+.+|++..... ......+.|....+....+ . + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 345899999999999999999998742100 0001112333322211110 0 0 257
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 71 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
++++||||. ..+...+......+|++++|+|++... .......+..+.. .+. .++++|+||+|+
T Consensus 87 i~liDtPG~-----------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGH-----------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 899999993 223333333335679999999998554 4555555555543 332 268999999999
Q ss_pred CCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+. ......... +..++...... .....+.|+.++.++.+|++.+...++
T Consensus 152 ~~~--~~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSK--ERALENYEQ-----IKEFVKGTVAE---NAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccc--hhHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 765 333322222 33333211000 012246788899999999999988654
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=122.76 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccc--------------ccC-----------------CCCCcceeeEeEEEEeeCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (352)
.+|+++|+.++|||||++.|+...... .+. ...+.|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 479999999999999999986332100 000 0122344444445555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.++||||..+ +...+......+|++++|+|+...+.......+..+..+ +. .++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 7899999999432 222233344588999999999877766666655555443 42 26889999999
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
....+...+++.... +..++...+... ....+.|+.++.++.+
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~---~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRD---VTFIPLSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCC---ccEEEeecccCCCCcc
Confidence 875422334443433 444544433210 0123567777777664
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-13 Score=119.11 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=78.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC------Cccccc--------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR------KAFKAS--------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~------~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||++.|++. ..+... ....+.|.......+.. ++..+++|||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence 45689999999999999999999843 110000 00133444443333333 567899999999532
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+...+......+|++++|+|+...........+..+... +.. ++++++||+|+.+.
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD 143 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence 222223333578999999999866777777777776543 431 45578999998754
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=112.25 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcc--c---------------------------ccCCCCCcceeeEeEEEEeeCCceE
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAF--K---------------------------ASAGSSGVTKTCEMKTTVLKDGQVV 71 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~--~---------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (352)
+|+++|+.|+|||||+..|+..... . ......+.|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4899999999999999998522100 0 0001122344444455555 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
.++||||..+ +..........+|++++|+|++.. ........+..+. .++. .|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999532 112222234578999999999842 2223333333333 2332 2899999
Q ss_pred eCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHH
Q 018636 145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 145 nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~ 198 (352)
||+|+... +...+++.+.. +..++...+.... -....++||.++.++.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~-~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPK-DVPFIPISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcC-CceEEEeecCcCCCCC
Confidence 99999742 12344555544 5545544332100 0012356777777765
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=99.20 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+++|..++||||||+...-... ......|. +.....+.+ .++ .+.+|||.| .+.+.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f----d~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAG-----------QERFr 85 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF----DNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAG-----------QERFR 85 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh----cccccceeeeEEEEEEEEE-cCcEEEEEEEeccc-----------HHHHh
Confidence 37999999999999999999874433 22222333 333333333 343 567999999 78888
Q ss_pred HHHhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhccc-ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
..+..+++++.++++|+|++++-|- ....|++-+..-.|.+ + .++||.||.|+.+. ......- -...
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dk--rqvs~eE-------g~~k 154 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDK--RQVSIEE-------GERK 154 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccch--hhhhHHH-------HHHH
Confidence 8888889999999999999966553 3356777777666653 3 56677899999876 2222100 0112
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+.-|. .+||+.+.++.+|+..|...++.
T Consensus 155 Akel~a~f~------etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 155 AKELNAEFI------ETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHhCcEEE------EecccCCCCHHHHHHHHHHhccC
Confidence 222233222 46888899999999998887754
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=129.32 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=96.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCC-----------------CCCcceeeEeEEE
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG-----------------SSGVTKTCEMKTT 63 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~-----------------~~~~t~~~~~~~~ 63 (352)
+.....+|+++|+.++|||||++.|+.....-. +.+ ..+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 334558999999999999999999986432100 000 0123333444444
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 64 ~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.+ ++..++++||||..+ +...+......+|++++|+|+...+.......+.++..+ +. .+++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 44 677889999999422 222222234588999999999866665555555554443 42 278899
Q ss_pred EeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+||+|....+...+++.... +..++...+... ....+.|+.++.++.+
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~---~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHD---VTFIPISALKGDNVVT 211 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCC---ccEEEEecccCCCccc
Confidence 99999875322444444444 444444433210 1123567777777663
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-13 Score=120.94 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=94.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcc-c-------------cc---------------CCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-K-------------AS---------------AGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~-~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (352)
....+|+++|+.++|||||++.|+..... . .+ ....+.|.......+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 34589999999999999999999742110 0 00 01123455555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC---CCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
+..+.+|||||.. .+...+...+..+|++++|+|+++. ........+.++ ..++. .++++++
T Consensus 84 ~~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 7789999999932 2333333345689999999999854 222223333333 23342 2789999
Q ss_pred eCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
||+|+...+...++..... +..++...+.... .....++|+.++.++.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 9999974322334443443 5555554432100 00123567777887765
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-13 Score=117.16 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+.|.++|+--.|||||+..|-+... ..-..|++|.....+.+.+. +...++++|||| .+.|...-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG-----------HeAFt~mR 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG-----------HEAFTAMR 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCc-----------HHHHHHHH
Confidence 6899999999999999999988776 33456778888888888775 358999999999 44444444
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.....-.|.+++|+++++.+.......+..++.. +- |+++.+||+|..+.+...+...+.. ..=..+.++
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~v----P~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~~g 142 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-GV----PIVVAINKIDKPEANPDKVKQELQE-----YGLVPEEWG 142 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-CC----CEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhhcC
Confidence 4445567999999999999999999988888874 43 9999999999986632333333333 221233444
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+... ..+.||+++.|+.+|++.+.-..
T Consensus 143 g~v~----~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 143 GDVI----FVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CceE----EEEeeccCCCCHHHHHHHHHHHH
Confidence 4432 24789999999999999876543
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=115.46 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=122.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|-|+|+...||||||..|-+... .....|++|.....+.+..+.|..++++|||| ...|...-.
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPG-----------HaAF~aMRa 219 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPG-----------HAAFSAMRA 219 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCc-----------HHHHHHHHh
Confidence 36899999999999999999988776 33456888999988888888899999999999 333433334
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
......|.+++|+.+++.........+..++.. .+ |+++.+||+|..+.+.+.....|.. ..-.++..|+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~GG 289 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLGG 289 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcCC
Confidence 444567999999999988888888888877764 22 9999999999886633333333332 2334566677
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..-. .+.||.++.+++.|.+.+.-.
T Consensus 290 dVQv----ipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 290 DVQV----IPISALTGENLDLLEEAILLL 314 (683)
T ss_pred ceeE----EEeecccCCChHHHHHHHHHH
Confidence 6654 477899999999998876543
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=110.67 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcc--cccCC-----CC-------------CcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAF--KASAG-----SS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~~-----~~-------------~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
++|+|+|+.|+|||||+++|+..... ..+.. .+ +.+.......+.+ .+..+.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 68999999999999999999743210 00000 01 1222233334555 7889999999996
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+. .... ..++..+|++++|+|++..+.......+..+.. .+. |+++++||+|....
T Consensus 82 ~df-------~~~~----~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~~----P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-------SEDT----YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RGI----PIITFINKLDREGR 138 (267)
T ss_pred hHH-------HHHH----HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cCC----CEEEEEECCccCCC
Confidence 542 1112 223357899999999986666555555544433 232 89999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=122.38 Aligned_cols=166 Identities=16% Similarity=0.246 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-ccccc-------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
++|+|+|+.++|||||++.|+... .+... ....++|.......+.+ .+..+++|||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 479999999999999999997421 11110 01123555555566666 7889999999996542
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
...+ ..++..+|++++|+|+...........+..+... +- |.++++||+|.... ...+.+..
T Consensus 78 ----~~ev----~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~i----p~IVviNKiD~~~a---~~~~v~~e-- 139 (594)
T TIGR01394 78 ----GGEV----ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-GL----KPIVVINKIDRPSA---RPDEVVDE-- 139 (594)
T ss_pred ----HHHH----HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-CC----CEEEEEECCCCCCc---CHHHHHHH--
Confidence 2222 2333578999999999866666667777766552 32 88999999998643 12222222
Q ss_pred ChhHHHHHHhcCCcE-EEEcCCCcccccchH----------HHHHHHHHHHHHHHh
Q 018636 166 PKPLKEILQLCDNRC-VLFDNKTKDEAKGTE----------QVRQLLSLVNSVIVQ 210 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~----------~~~~L~~~i~~~~~~ 210 (352)
+..++..++..- ....+....|+.++. ++..|++.|.+.++.
T Consensus 140 ---i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ---HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 333332211100 000012344555553 788999988887764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=107.39 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=71.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeE---------------------------------------
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMK--------------------------------------- 61 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~--------------------------------------- 61 (352)
|+|+|..++|||||||+|+|...++++..+.+... .....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999886554433222111 00000
Q ss_pred -------------EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHH
Q 018636 62 -------------TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (352)
Q Consensus 62 -------------~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~ 128 (352)
.........+.||||||+.+.......+ +..+...+|+++||.++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~-------~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEI-------TEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHH-------HHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHH-------HHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0001113357899999998744333222 22222688999999999966776766666655
Q ss_pred HHhhcccccceEEEEEeCC
Q 018636 129 PNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 129 ~~~~~~~~~~~~ilv~nk~ 147 (352)
...... .+++|+||+
T Consensus 154 ~~~~~~----~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDKS----RTIFVLNKA 168 (168)
T ss_dssp HTTTCS----SEEEEEE-G
T ss_pred hcCCCC----eEEEEEcCC
Confidence 554343 688999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=102.50 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=97.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEee-C--CceEEEEeCCCCCCCCCCcHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVG 90 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~--~~~~~lvDtpG~~~~~~~~~~~~ 90 (352)
..+|.+||.+|.|||||+|.|+......++... .+.|+........+. + .-+++++|||||+|.-. ++.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-NDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-ccchh
Confidence 368999999999999999999865543321111 122333332222221 2 23678999999998543 22333
Q ss_pred HHHHHHHh------------------cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 91 KEIVKCLG------------------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 91 ~~~~~~~~------------------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+-+.+++. .....+|+++|.++++ +.+...+...|+.+.+. + +++-|+-|.|.++
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v----v--NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV----V--NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh----h--eeeeeEeeccccc
Confidence 33333321 1123579999999887 77888888877776654 2 7999999999986
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEc
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (352)
- +...+|.+. ++.-+...+-..+..+
T Consensus 199 l--eEr~~Fkqr-----I~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 199 L--EERSAFKQR-----IRKELEKHGIDVYPQD 224 (336)
T ss_pred H--HHHHHHHHH-----HHHHHHhcCccccccc
Confidence 6 666666666 6656666555555433
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=97.79 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=100.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+++++|.+|+|||.|+...+.+.. .+ ....+..+......+.+ +++ .+.||||.| .+.+...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-~~-~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaG-----------qe~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-QP-VHDLTIGVEFGARMVTI-DGKQIKLQIWDTAG-----------QESFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-cc-cccceeeeeeceeEEEE-cCceEEEEEEecCC-----------cHHHHHH
Confidence 36899999999999999999987764 22 11122233333444455 444 568999999 5566777
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+|.++.+.|+|+|++.+-+-. .-.+|.-++.....+. -++|+.||+|+... ..+.+ .-.+.+..
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~--------EEGeaFA~ 139 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSK--------EEGEAFAR 139 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccH--------HHHHHHHH
Confidence 777889999999999998443322 2345666666543322 45566799999865 22211 12223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.++-.+. .+||+++.++.+.+-.+..
T Consensus 140 ehgLifm-----ETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 140 EHGLIFM-----ETSAKTAENVEEAFINTAK 165 (216)
T ss_pred HcCceee-----hhhhhhhhhHHHHHHHHHH
Confidence 2444443 6788888888887765443
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=105.39 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=90.0
Q ss_pred CceEEEEEcCCCCCHHHHHH-HhhCCCcccccCCCCCcceeeEeEEEE--ee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGN-SILGRKAFKASAGSSGVTKTCEMKTTV--LK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin-~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+|+|++|||||||++ .+.|... .....|....+.... .. ....+.++||+|....
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~----------- 71 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-----KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF----------- 71 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-----CCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 44899999999999999996 5555432 111222222222221 11 2346789999994321
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.......+...+++++|+|++++.+-... .++..+..... . .|++++.||+|.... ....+ ...+
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~~--~~~~~---------~~~~ 137 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKDR--QVKAR---------QITF 137 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCccc--cCCHH---------HHHH
Confidence 11112234577999999999844443322 33344443322 2 288899999998643 21111 1112
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+..++ ..|+.++.++++++..+.+.+..
T Consensus 138 ~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 138 HRKKNLQYY------DISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhh
Confidence 223233333 45777888999988888776654
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=100.65 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+++|.+|+|||-|+...+.... .. .+..++.+........+ +++ ...||||.| .+++...
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF-~~-~SksTIGvef~t~t~~v-d~k~vkaqIWDTAG-----------QERyrAi 79 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEF-SL-ESKSTIGVEFATRTVNV-DGKTVKAQIWDTAG-----------QERYRAI 79 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccccc-Cc-ccccceeEEEEeeceee-cCcEEEEeeecccc-----------hhhhccc
Confidence 36899999999999999999885543 11 22222222333333334 444 347999999 5566656
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
...+|.++.+.++|+|++.+.+-. -.+||..|+......+ .+++|.||+|+..
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 667889999999999998555433 3456666666655444 7888899999875
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=121.37 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----CC------------ceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----DG------------QVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----~~------------~~~~lvDtpG~~~~ 82 (352)
..|+++|+.|+|||||+|.|.|..... ...+..|........... .+ ..+++|||||..+.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 689999999999999999998875421 222333322222111110 00 12689999995432
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
.......+..+|++++|+|+++.+.......+..+.. .+. |+++++||+|..
T Consensus 85 -----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~v----piIvviNK~D~~ 136 (586)
T PRK04004 85 -----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RKT----PFVVAANKIDRI 136 (586)
T ss_pred -----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cCC----CEEEEEECcCCc
Confidence 2222223457899999999986677777776666544 232 899999999985
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=121.54 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc------ccccCC-------CCCcceeeEeEEEEee--C--CceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA------FKASAG-------SSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~-------~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~~ 82 (352)
.+|+|+|+.|+|||||++.|+.... +..... ..++|.......+.+. + ...+.+|||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 6899999999999999999975421 000000 1134444333333332 2 256899999996552
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
... ...++..+|++++|+|+++..+......+..+.. .+ . |+++++||+|+... . .++...
T Consensus 84 -------~~~----v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~~--i--piIiViNKiDl~~~--~-~~~~~~ 144 (595)
T TIGR01393 84 -------SYE----VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-ND--L--EIIPVINKIDLPSA--D-PERVKK 144 (595)
T ss_pred -------HHH----HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-cC--C--CEEEEEECcCCCcc--C-HHHHHH
Confidence 122 2234457899999999986676665554443332 12 2 89999999998643 1 122222
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. +...+ +.. +......||+++.++.+|++.+.+.++.
T Consensus 145 e-----l~~~l---g~~---~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 145 E-----IEEVI---GLD---ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred H-----HHHHh---CCC---cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 2 22222 211 0112467999999999999999887754
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-11 Score=96.66 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEee--C-CceEEEEeCCCCCCCCCCcH---HHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK--D-GQVVNVIDTPGLFDLSAGSE---FVGK 91 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~--~-~~~~~lvDtpG~~~~~~~~~---~~~~ 91 (352)
..+|..||.+|.|||||+.+|++... .+.+++.. .++......+... + .-.++|+||.||+|.-..++ .+..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 36899999999999999999997643 33333222 1222211112221 1 23678999999998542221 1111
Q ss_pred ----HHHHH----------Hh-cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchh
Q 018636 92 ----EIVKC----------LG-MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (352)
Q Consensus 92 ----~~~~~----------~~-~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (352)
++..+ +. .....+|+++|.+.++ +.+...+...++.+.. .+ ++|-|+-|.|.... .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----kV--NIIPvIAKaDtisK--~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----KV--NIIPVIAKADTISK--E 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----hh--hhHHHHHHhhhhhH--H
Confidence 11111 11 1225689999999887 4454444444433322 22 88888999998876 6
Q ss_pred cHHHHhcccCChhHHHHHHhcCCcEEEEcCCC
Q 018636 156 TLEDFLGHECPKPLKEILQLCDNRCVLFDNKT 187 (352)
Q Consensus 156 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (352)
.|..|-.. +..-+...+-.++.|....
T Consensus 193 eL~~FK~k-----imsEL~sngv~IYqfPtDd 219 (406)
T KOG3859|consen 193 ELKRFKIK-----IMSELVSNGVQIYQFPTDD 219 (406)
T ss_pred HHHHHHHH-----HHHHHHhcCceeeeccchH
Confidence 67666554 3333334345555555443
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=120.56 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC-ccccc-------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
-.+|+|+|+.++|||||++.|+... .+... ....++|.......+.+ ++..+++|||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence 3689999999999999999998632 11110 01123344444445555 68899999999976531
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~ 164 (352)
..+ ..++..+|++++|+|+...........+..+.. .+. |.++++||+|.... ..++.+..
T Consensus 83 ------~~v----~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~gi----p~IVviNKiD~~~a---~~~~vl~e- 143 (607)
T PRK10218 83 ------GEV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YGL----KPIVVINKVDRPGA---RPDWVVDQ- 143 (607)
T ss_pred ------HHH----HHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cCC----CEEEEEECcCCCCC---chhHHHHH-
Confidence 222 223467899999999986666666666665544 243 78999999998644 22222222
Q ss_pred CChhHHHHHHhcCCcEE-EEcCCCcccccchH----------HHHHHHHHHHHHHHh
Q 018636 165 CPKPLKEILQLCDNRCV-LFDNKTKDEAKGTE----------QVRQLLSLVNSVIVQ 210 (352)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~----------~~~~L~~~i~~~~~~ 210 (352)
+..++..++.... .-.+....|+.++. ++..|++.|.+.++.
T Consensus 144 ----i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 144 ----VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ----HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 2223221111000 00112345665555 578888888887754
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-13 Score=109.51 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc---C--------------CCCCcceeeEeEEEEee----CCceEEEEeCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS---A--------------GSSGVTKTCEMKTTVLK----DGQVVNVIDTPGL 79 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~---~--------------~~~~~t~~~~~~~~~~~----~~~~~~lvDtpG~ 79 (352)
+|+|+|+.|+|||||++.|++....... . ...+++.......+.+. ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864321100 0 00112222222222221 2356889999997
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
.+. ... ...++..+|++++|+|+....+......+..+.. .+ .|+++++||+|..
T Consensus 82 ~~f-------~~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-------MDE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EG----LPIVLVINKIDRL 136 (213)
T ss_pred cch-------HHH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccC
Confidence 652 111 2223357899999999986666555454444432 12 2899999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=109.13 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcc--ccc-CCCC-------------CcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAF--KAS-AGSS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~--~~~-~~~~-------------~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+|+|+|++|+|||||+|.|++.... ..+ ...+ ..+.......+.+ ++..+++|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 4899999999999999999753210 000 0011 1122223334445 6788999999996431
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...... ++..+|++++|++++..........+..+.. .+. |.++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~~----p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETRA----ALRAADAALVVVSAQSGVEVGTEKLWEFADE-AGI----PRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHH----HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECCccCCC
Confidence 122222 3347899999999986565555555555443 232 89999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=118.35 Aligned_cols=168 Identities=11% Similarity=0.116 Sum_probs=104.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEE---------------Eee---------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT---------------VLK--------------- 66 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~---------------~~~--------------- 66 (352)
...+|+++|+-.+|||||+.+|+|....... ....+.|....+... .+.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 3489999999999999999999986542211 001112211111100 000
Q ss_pred --CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 67 --DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 67 --~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
-...++++||||. +.+.+.+......+|++++|+++... .....+..+..+. .++-. +++++
T Consensus 113 ~~~~~~i~~IDtPGH-----------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~---~iIVv 177 (460)
T PTZ00327 113 MTLKRHVSFVDCPGH-----------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLK---HIIIL 177 (460)
T ss_pred ccccceEeeeeCCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCC---cEEEE
Confidence 0246899999993 33444444444588999999999853 3444455554443 34432 78999
Q ss_pred EeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+||+|+.+. .++++.... +..++..+.. ......+.|+.++.++..|++.|...++.
T Consensus 178 lNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 178 QNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 999999865 566555544 5544433211 12234578999999999999999976653
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=104.57 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE----------------------------------------
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (352)
..|+|||++|+|||||+++|+|...++.+ .+.+|....
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~--~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccC--CCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999997533221 122221100
Q ss_pred -----------eEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhcccC-CccEEEEEEecCCCCCHHH-HHH
Q 018636 60 -----------MKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETA 124 (352)
Q Consensus 60 -----------~~~~~~~~~~~~~lvDtpG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~-~~~ 124 (352)
...+..++...++||||||+..... ....+...+...+..+.. ..+.+++|+++...+...+ ...
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0001111235688999999975321 123334445554544444 3458899998876666655 344
Q ss_pred HHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 125 VHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+.+.. .+. ++++|+||+|....
T Consensus 185 a~~ld~-~~~----rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP-QGE----RTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH-cCC----cEEEEEECCCCCCc
Confidence 444433 233 89999999999865
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=102.11 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
+|+++|..|+|||||++.+.+... . .....|. ......+.. ++. .+.+||++|... ...+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~--------~~~~~-- 65 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-P---ENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQER--------FDSLR-- 65 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-T---SSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGG--------GHHHH--
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-c---cccccccccccccccccc-ccccccccccccccccc--------ccccc--
Confidence 689999999999999999987653 1 1122222 222222333 333 578999999432 11222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|++++++-+-.. ..++..+........ |++|+.||.|......-..++ ...+...
T Consensus 66 -~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~~~~v~~~~---------~~~~~~~ 133 (162)
T PF00071_consen 66 -DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSDEREVSVEE---------AQEFAKE 133 (162)
T ss_dssp -HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGGGSSSCHHH---------HHHHHHH
T ss_pred -cccccccccccccccccccccccccccccccccccccccc--cceeeeccccccccccchhhH---------HHHHHHH
Confidence 223468899999999983322222 245555555555223 899999999987530011111 3334455
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..|+ .+|++++.++.+++..+.+.+
T Consensus 134 ~~~~~~------e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 134 LGVPYF------EVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTSEEE------EEBTTTTTTHHHHHHHHHHHH
T ss_pred hCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 454444 456777889999888766543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=102.51 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc--CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
||+|+|..|+|||||++.|++....... ......+.......... +...+.++|++|......... .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--------~-- 69 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ--------F-- 69 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH--------H--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc--------c--
Confidence 6999999999999999999987753000 11111122211111111 233478999999643111100 0
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
....+|++++|+|+++.-+-... .++.++....+.....|+++|.||.|
T Consensus 70 -~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 70 -FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 12467999999999833333331 23334444432122249999999988
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=120.09 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=93.9
Q ss_pred cCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCcc
Q 018636 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105 (352)
Q Consensus 26 G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (352)
|.+|+|||||+|.|+|... ..+..+ +.|.......+.+ ++..+.++||||..+...... .+.+..... ...++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~p-G~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~l-~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWP-GVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDYL-LNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCC-CeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHHH-hhcCCC
Confidence 8999999999999999864 222322 2444444444555 677899999999876543221 122222111 124789
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcC
Q 018636 106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (352)
Q Consensus 106 ~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352)
++++|+|.+ .+... +.+........ .|+++++||+|.... ..+... .+.+....+..+
T Consensus 75 vvI~VvDat-~ler~----l~l~~ql~~~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pv----- 132 (591)
T TIGR00437 75 LVVNVVDAS-NLERN----LYLTLQLLELG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPV----- 132 (591)
T ss_pred EEEEEecCC-cchhh----HHHHHHHHhcC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCE-----
Confidence 999999998 44322 22222222112 299999999998643 222111 222333334333
Q ss_pred CCcccccchHHHHHHHHHHHHHH
Q 018636 186 KTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 186 ~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.++|++++.+++++++.+.+..
T Consensus 133 -v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 -VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -EEEECCCCCCHHHHHHHHHHHh
Confidence 3578888999999999988764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=99.39 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=83.9
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
|+|++|+|||||+|.|.+...... ....|. ......... .+..+.++|+||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 589999999999999998765211 111121 222222221 25678999999965421 111223
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHH--HHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
...+|++++|++++...+......+ ..+.... ....|+++++||+|.... ....... . ..........
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~--~~~~~~~-~-----~~~~~~~~~~ 135 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE--RVVSEEE-L-----AEQLAKELGV 135 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc--cchHHHH-H-----HHHHHhhcCC
Confidence 4678999999999843333333322 1111111 122399999999998765 2222211 0 1112222233
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.++ ..|+..+.++.++++++.
T Consensus 136 ~~~------~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 136 PYF------ETSAKTGENVEELFEELA 156 (157)
T ss_pred cEE------EEecCCCCChHHHHHHHh
Confidence 333 345556678888888753
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-13 Score=95.00 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.||++||..|||||||.++|-|... ....+.. +++ +.. ..|||||.+.. ...+..++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~----lykKTQA-------ve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT----LYKKTQA-------VEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh----hhcccce-------eec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 5899999999999999999999875 2211111 122 111 26899997653 2344444554
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
....++++++|..++++.+.-- ..+...+. +++|-|+||.|+.++ ..++. .+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~----p~f~~~~~----k~vIgvVTK~DLaed--~dI~~---------~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP----PGFLDIGV----KKVIGVVTKADLAED--ADISL---------VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCC----cccccccc----cceEEEEecccccch--HhHHH---------HHHHHHHcCCc
Confidence 5568899999998873322211 11222222 379999999999865 33331 33444444533
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.++ ..|+.++.++++|++.+..
T Consensus 122 ~IF-----~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIF-----ETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceE-----EEeccCcccHHHHHHHHHh
Confidence 332 3355567899999887654
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=101.11 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHH-HhhCCCccccc--CCCCCccee--eEeE-E--------EEeeCC--ceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT--CEMK-T--------TVLKDG--QVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin-~l~g~~~~~~~--~~~~~~t~~--~~~~-~--------~~~~~~--~~~~lvDtpG~~~~~ 83 (352)
.+|+++|..|+|||||+. .+.+... ... ......|.. ..+. . ..+ ++ ..+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh-
Confidence 689999999999999995 5543321 100 111112221 0000 0 012 33 45689999995421
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH----
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL---- 157 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l---- 157 (352)
+ ...++.++|++++|+|++++-+-... .++..+..... .. |+++|.||+|+........
T Consensus 80 ---------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 ---------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RV--PVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred ---------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CC--CEEEEEEchhccccccchhhhcc
Confidence 1 12356899999999999855554433 35565655432 22 8999999999853200000
Q ss_pred ---------HHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 158 ---------EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 158 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+. ......+....+..|+ .+||+++.++.++++.+.+
T Consensus 145 ~~~~~~~~~~~~V~---~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 145 RPLARPIKNADILP---PETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccccCCccC---HHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 00000 0112334444444343 5788999999999987654
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=108.45 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=76.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEee--------------CCceEEEEeCC
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK--------------DGQVVNVIDTP 77 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~--------------~~~~~~lvDtp 77 (352)
.+.....+|+|+|..|+|||||++.+.+... ......|..+. ...+.+. ....+.||||+
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F----~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTA 91 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS----IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVS 91 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCc----ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECC
Confidence 3445568999999999999999999997654 11122232222 2222321 12347899999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc----------cccceEEEEEeC
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK----------NVFDYMIVVFTG 146 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~----------~~~~~~ilv~nk 146 (352)
|-. .+.......+.+++++|+|+|++++-+-... .++..+...... ....|++||.||
T Consensus 92 GqE-----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 92 GHE-----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred CCh-----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 943 2333344456899999999999854333322 355555543210 011389999999
Q ss_pred CCCCCc
Q 018636 147 GDDLED 152 (352)
Q Consensus 147 ~D~~~~ 152 (352)
+|+...
T Consensus 161 ~DL~~~ 166 (334)
T PLN00023 161 ADIAPK 166 (334)
T ss_pred cccccc
Confidence 998643
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=103.22 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|++|+|||||++.|.+... ....+ ++......... ..+..+.||||||... +...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~----~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY----RSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC----CCccC-cEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence 689999999999999999987643 11111 11111111211 1356789999999543 22222
Q ss_pred hcccCCc-cEEEEEEecCCCCCHHHHHHHHHHHHhh----cccccceEEEEEeCCCCCCc
Q 018636 98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~ilv~nk~D~~~~ 152 (352)
...+... ++++||+|+. .....-.....++..++ ......|++|+.||+|+...
T Consensus 66 ~~~~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2334455 9999999998 33111111112211111 10012399999999998754
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=115.65 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=94.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC---cc------------------------c--ccCCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK---AF------------------------K--ASAGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~---~~------------------------~--~~~~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.++|||||+..|+... .. . ......+.|.......+.+ ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 45899999999999999999886311 00 0 0001122444454555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..++|+||||.. .+...+......+|++++|+|+.... ....+..+..+.. +|-. ++|
T Consensus 85 ~~i~lIDtPGh~-----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHR-----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QMI 149 (446)
T ss_pred eEEEEEECCChH-----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eEE
Confidence 889999999933 33333344446889999999998543 2455555555544 3532 578
Q ss_pred EEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHH
Q 018636 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 142 lv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~ 198 (352)
+++||+|.... +...+++.+.. +..++...+.... --...+.|+.++.++.
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~~~~-~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGYNPE-KVPFIPISGWQGDNMI 202 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCCCcc-cceEEEeecccCCCcc
Confidence 89999995321 22455555555 6656554432100 0112356666677664
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-12 Score=118.23 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=98.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-ccc---c---------CCCCCcceeeEeEEEEee--C--CceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKA---S---------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~---~---------~~~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~ 81 (352)
-.+|+|+|+.++|||||+..|+.... ... + ....++|.......+.|. + +..+++|||||..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 36899999999999999999974321 000 0 001233433333333332 2 45789999999765
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
. ...+. .++..+|++++|+|+++.....+...+..+.. .+. |+++++||+|+... ..+...
T Consensus 87 F-------~~~v~----~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~~l----piIvViNKiDl~~a---~~~~v~ 147 (600)
T PRK05433 87 F-------SYEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALE-NDL----EIIPVLNKIDLPAA---DPERVK 147 (600)
T ss_pred H-------HHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CCC----CEEEEEECCCCCcc---cHHHHH
Confidence 2 12222 23457899999999987776666555544432 222 89999999998643 122222
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +...+ +.. .......||.++.++.+|++.|...++.
T Consensus 148 ~e-----i~~~l---g~~---~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 148 QE-----IEDVI---GID---ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HH-----HHHHh---CCC---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22 22222 111 0112467899999999999999887764
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-12 Score=114.42 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=88.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccc--------------ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
.+..+|+++|+.++|||||++.|++..... ......+.|.......+.+ ++..++++||||..
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~-- 155 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA-- 155 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH--
Confidence 455899999999999999999998532100 0011122344444444444 67889999999943
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.+...+......+|++++|+|+........+..+..+... +.. ++++++||+|+... +.+.+.+.
T Consensus 156 ---------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~i~ 220 (478)
T PLN03126 156 ---------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLELVE 220 (478)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHHHH
Confidence 2333333334578999999999877777777777766543 431 47788999999764 33333333
Q ss_pred ccCChhHHHHHHhc
Q 018636 163 HECPKPLKEILQLC 176 (352)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (352)
. .+..++..+
T Consensus 221 ~----~i~~~l~~~ 230 (478)
T PLN03126 221 L----EVRELLSSY 230 (478)
T ss_pred H----HHHHHHHhc
Confidence 1 266666554
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=93.24 Aligned_cols=119 Identities=17% Similarity=0.254 Sum_probs=84.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc-----cCCCCC---cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~ 90 (352)
..+|+|+|+.|+||||+++.+........ ..+... .|+...+....+..+..+++++||| .
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG-----------q 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG-----------Q 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC-----------c
Confidence 36999999999999999999987652110 011111 3444455556665568999999999 3
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.++.-.+.....++.+.++++|.+...+..+...++.+.....- |++|..||.|+.+.
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~i----p~vVa~NK~DL~~a 136 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPI----PVVVAINKQDLFDA 136 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCC----CEEEEeeccccCCC
Confidence 44444444555788999999998856666777777777765442 89999999999876
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=101.50 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-EeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||++.+.+... ......|........ .... ...+.+|||+| ..++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g-----------q~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF----PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG-----------QEEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC----cccCCCceeeeeEEEEEEeCCCEEEEEeecCCC-----------HHHHHHH
Confidence 7999999999999999999998776 222222322222211 1112 34567999999 4555566
Q ss_pred HhcccCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...++.+++++++|++... +....-..+...+....+... +++++.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV--PILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc--eEEEEecccccccc
Confidence 6667789999999999873 222333345555555543222 89999999999865
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=104.36 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC--------------CCCcceeeEeEEEEee---------CCceEEEEeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLK---------DGQVVNVIDT 76 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~~~lvDt 76 (352)
++|+++|+.++|||||+..|+.......... ..+.|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999974431100000 0112222222222221 1567889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
||..+. .. ....++..+|++++|+|+....+......+..+... +. |+++++||+|+.
T Consensus 81 PG~~~f-------~~----~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~~----p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-------SS----EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-RV----KPVLVINKIDRL 138 (222)
T ss_pred CCcccc-------HH----HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCcc
Confidence 997653 12 223334578999999999977777776666655432 32 899999999976
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=89.84 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+..|+|.+|+|||+|+-....... ++....++..+..+..+.+ +|. .+.||||.| .+.+.....
T Consensus 10 kllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAG-----------qErFrtits 75 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAG-----------QERFRTITS 75 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeec-CCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 467899999999999988875533 1111111223344445555 344 458899999 566666677
Q ss_pred cccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.+|.+.|++++|+|+++.-| ..-.+||+.+..-+.. + |-++|.||.|..++ ..+...- .+......+
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R--rvV~t~d-------Ar~~A~~mg 143 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER--RVVDTED-------ARAFALQMG 143 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc--eeeehHH-------HHHHHHhcC
Confidence 78899999999999984333 3345678888776653 3 88999999998866 3332211 111222222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
-.+| .+|++...++...+..|.+.+
T Consensus 144 ie~F------ETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 144 IELF------ETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred chhe------ehhhhhcccchHHHHHHHHHH
Confidence 2222 456777788888888777665
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=109.58 Aligned_cols=118 Identities=22% Similarity=0.223 Sum_probs=66.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-CCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|||+|.+|+|||||||+|.|-..-..+... |.+.+......+..+.-.++++||.||++.+....+. +...+
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl~~~ 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEE----YLKEV 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHH----HHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHH----HHHHc
Confidence 479999999999999999999874321111222 2221222222333445567999999998765433332 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
. +...|.|+++.+ . +++..+......+..+ |+ ++.+|-||+|.
T Consensus 111 ~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 K--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDS 153 (376)
T ss_dssp T--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred c--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence 1 234576666543 4 8999999888888775 65 89999999995
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=117.95 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc---ccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK---ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~---~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-++|+|+|+.|+|||||+|.|+...... .... ..++|.......+.+ ++..+++|||||..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 34799999999999999999996422100 0001 123455555566666 788999999999876
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.. .... .++..+|++++|+|+.......+...+..+... +. |+++++||+|+...
T Consensus 88 ~~-------~~~~----~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FT-------VEVE----RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-EV----PRIAFVNKMDKTGA 142 (689)
T ss_pred hh-------HHHH----HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 31 1222 233467999999999877777766666665543 32 89999999998865
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=117.37 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc---ccccC-------------CCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-++|+|+|+.++|||||++.|+.... ..... ...++|.......+.+ ++..++++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence 447899999999999999999964211 00000 1233455555556666 788999999999643
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ..+ ...+...+|++++|+|+...+...+...+..+... +. |.++++||+|....
T Consensus 86 f-------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 F-------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 1 222 33334577999999999877888777777766553 43 88999999999865
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=116.91 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=83.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCCcccccC-------------CCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-++|+|+|+.++|||||++.|+ |........ ...+.|.......+.+ .+..++++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 34799999999999999999996 432110000 1223455555555666 788999999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ..++.. +...+|++++|+|+...+...+...+..+... +. |.++++||+|....
T Consensus 88 f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 F-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred H-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 2 222333 33467999999999878888888888877654 43 78999999998865
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=89.24 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..++.++|...+|||||+...++...... ...++..+..+..+.-. ....+.+|||.|. +.+....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~a--fvsTvGidFKvKTvyr~~kRiklQiwDTagq-----------EryrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ-----------ERYRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccc--eeeeeeeeEEEeEeeecccEEEEEEEecccc-----------hhhhHHH
Confidence 35999999999999999999998764111 11112223333332221 2346789999993 3344445
Q ss_pred hcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..++++++++++++|.++.-+- .-..+.-.++..+-.++ ++|++.||||+.+. ..+... ....+....
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis~e-------~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVISHE-------RGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeeeHH-------HHHHHHHHh
Confidence 5677899999999999833222 22234444444332233 89999999999865 322210 123344444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|-.++ ..|++.+-++.++++.+...+..
T Consensus 157 GfefF------EtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 157 GFEFF------ETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ChHHh------hhcccccccHHHHHHHHHHHHHH
Confidence 54443 45677778888888877666543
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=95.08 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|-.||||||++..|--...+.. ..|....+..+.+ .+..+++||.-|... ++..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~l 77 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRPL 77 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cccc
Confidence 4568999999999999999988854444222 3455666666666 688899999999533 2333
Q ss_pred HhcccCCccEEEEEEecCCC--CCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNR--FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...++.+.++++||+|.+++ +...-....+.+...-- ...|+++..||.|.... ....+.-+. + .+-.
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~a--ls~~ei~~~-----L-~l~~ 147 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGA--LSAAEITNK-----L-GLHS 147 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCccc--CCceEEEEechhhcccc--CCHHHHHhH-----h-hhhc
Confidence 44566889999999998832 22211111122211110 12388888999998876 443333222 1 1223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.++..+++ ..++|.++.++.+-++++...+..
T Consensus 148 l~~~~w~i----q~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 148 LRSRNWHI----QSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCCCcEE----eeccccccccHHHHHHHHHHHHhc
Confidence 33333443 244667789999999998877643
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=116.55 Aligned_cols=118 Identities=20% Similarity=0.265 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcc---cccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAF---KASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~---~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-.+|+|+|+.|+|||||++.|+..... ..... ....|.......+.+ .+..+.+|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4479999999999999999999742210 00000 122344444455566 688999999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ... ...++..+|++++|+|++..........+..+... +. |+++++||+|+...
T Consensus 86 f-------~~~----~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~~----p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-------TGE----VERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-GI----PRLIFINKMDRVGA 140 (687)
T ss_pred H-------HHH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-CC----CEEEEEECCCCCCC
Confidence 2 122 22334578999999999867766666666655442 32 89999999998754
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=100.18 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=70.2
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HH-HHHHHHHhhcccccceEEEEEeCC
Q 018636 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ET-AVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 70 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
...||||||..+.-..... +.-+...+.. ..+.+++||+|....-+... .. .|-.+..++.-.. |+|+++||+
T Consensus 117 ~~~liDTPGQIE~FtWSAs-GsIIte~las--s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktkl--p~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSAS-GSIITETLAS--SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKL--PFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecCC-ccchHhhHhh--cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccC--CeEEEEecc
Confidence 4679999997652211110 1222223332 35678999998762222221 12 2222223333333 999999999
Q ss_pred CCCCcchhcHHHHhcc----------cCChhHHHHHHhcCCcEEEE-c--CCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGH----------ECPKPLKEILQLCDNRCVLF-D--NKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~----------~~~~~~~~~~~~~~~~~~~~-~--~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|..+. ....+++.. ..+.+...+.....-..-.| . ..+.+|+.+|.|.++++..|.+.+.+
T Consensus 192 Dv~d~--~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDS--EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccc--HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 99876 333333322 11222222222111000001 1 12356888999999999999999876
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-11 Score=101.73 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=80.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccc-------------cCCC--C-Ccce-eeEe---EEEEeeCC----ceE
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGS--S-GVTK-TCEM---KTTVLKDG----QVV 71 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------------~~~~--~-~~t~-~~~~---~~~~~~~~----~~~ 71 (352)
.++.+.|+|+|+.++|||||||.+++..+.+. .+++ | ++|+ ...+ ....+... -++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 35668999999999999999999999832221 1122 2 2233 3222 23333223 578
Q ss_pred EEEeCCCCCCCCCCcHHHHHH--------------HHHH----Hhccc-CCccEEEEEE-ecC------CCCCHHHHHHH
Q 018636 72 NVIDTPGLFDLSAGSEFVGKE--------------IVKC----LGMAK-DGIHAFLVVF-SVT------NRFSQEEETAV 125 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~--------------~~~~----~~~~~-~~~~~~l~v~-~~~------~~~~~~~~~~l 125 (352)
.++||+||.+.......-... +..+ ..... ..++..++|. |.+ +.+...+.+.+
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998754321110000 0000 01111 3667777777 663 45667788888
Q ss_pred HHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 126 HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 126 ~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..++.. +. |+++|+|+.|-...
T Consensus 174 ~eLk~~-~k----PfiivlN~~dp~~~ 195 (492)
T TIGR02836 174 EELKEL-NK----PFIILLNSTHPYHP 195 (492)
T ss_pred HHHHhc-CC----CEEEEEECcCCCCc
Confidence 888875 44 99999999995433
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=111.37 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC--CCcccccCC------------------CCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|+.|+|||||++.|+- ......+.. ..+++.......+.+ ++..+.++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence 447999999999999999998752 111000000 011233333344455 68899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..+. ... ...++..+|++++|+|+...+.......+..+.. .+. |+++++||+|....
T Consensus 89 G~~df-------~~~----~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~~----PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDF-------SED----TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RDT----PIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhH-------HHH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cCC----CEEEEEECccccCC
Confidence 97542 122 2223457899999999986666665666554443 232 89999999998654
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=99.64 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=67.4
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHH-HHHhhcccccceEEEEEeC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ilv~nk 146 (352)
+..+.|+||+|...... . + ...+|.++++.++. ++.+...+.. +.+. ..++|+||
T Consensus 148 g~d~viieT~Gv~qs~~---~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET---A----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh---H----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 56788999999885321 1 1 12478988887532 2333333222 2222 35899999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+|+... ......... +...+.....+.-.+ .++..+|+.++.++++|++.|.+.++
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998865 434444443 444444322221112 23456788999999999999999876
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=107.91 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh---CCCcc------------------------c--ccCCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL---GRKAF------------------------K--ASAGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~---g~~~~------------------------~--~~~~~~~~t~~~~~~~~~~~~ 67 (352)
.+..+|+++|+.++|||||+-.|+ |.... . ......++|.......+.+ .
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 345899999999999999997775 21100 0 0011123455555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-CC------HHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
+..++++|||| ..++...+......+|+.++|+|+... +. ...+..+.++.. +|-. ++
T Consensus 84 ~~~i~liDtPG-----------h~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~i 148 (447)
T PLN00043 84 KYYCTVIDAPG-----------HRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QM 148 (447)
T ss_pred CEEEEEEECCC-----------HHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cE
Confidence 78999999999 344554555555689999999999842 21 333444443333 3432 57
Q ss_pred EEEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHH
Q 018636 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 141 ilv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~ 198 (352)
++++||+|.... ....+++.+.+ +..++...+-..-. -...+.|+.++.++.
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g~~~~~-~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVGYNPDK-IPFVPISGFEGDNMI 202 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcCCCccc-ceEEEEecccccccc
Confidence 888999997632 12345555555 66666654421000 011255666666653
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-11 Score=109.73 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC--CCcccccCC------------------CCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|+.|+|||||++.|+. ......+.. ..+.+.......+.+ ++..+++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 347999999999999999999852 111000000 011222333334455 68889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..+. ...... ++..+|++++|+|++..+.......+..+.. .+. |+++++||+|....
T Consensus 88 G~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~i----Piiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDF-------SEDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RDT----PIFTFINKLDRDGR 146 (526)
T ss_pred Cchhh-------HHHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cCC----CEEEEEECCccccc
Confidence 97552 122222 2347899999999986676665566555443 232 89999999998765
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-13 Score=125.34 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=77.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeCCceE----EEEeCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDGQVV----NVIDTPGL 79 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~----~lvDtpG~ 79 (352)
+.+++++... .+.+|+|+|+||+|||||++.|+|... +..|.+..... +.++.. +...+ +++|...-
T Consensus 337 l~~~~s~~i~--~g~riaiiG~NG~GKSTLlk~l~g~~~----~~~G~v~~g~~v~igyf~Q-~~~~l~~~~t~~d~l~~ 409 (530)
T COG0488 337 LLKDLSFRID--RGDRIAIVGPNGAGKSTLLKLLAGELG----PLSGTVKVGETVKIGYFDQ-HRDELDPDKTVLEELSE 409 (530)
T ss_pred eecCceEEec--CCCEEEEECCCCCCHHHHHHHHhhhcc----cCCceEEeCCceEEEEEEe-hhhhcCccCcHHHHHHh
Confidence 4444444443 448999999999999999999998876 44454443222 222222 11111 12211110
Q ss_pred CCCCCCcHHHHHHHHHHHhc-ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchh
Q 018636 80 FDLSAGSEFVGKEIVKCLGM-AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEK 155 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~ 155 (352)
...... ...+..++.. .+.+.++ ...+. .+|++++.++.+++.++... |++|+ +||+|..+. +
T Consensus 410 ~~~~~~----e~~~r~~L~~f~F~~~~~---~~~v~-~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~ 476 (530)
T COG0488 410 GFPDGD----EQEVRAYLGRFGFTGEDQ---EKPVG-VLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--E 476 (530)
T ss_pred hCcccc----HHHHHHHHHHcCCChHHH---hCchh-hcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--H
Confidence 010001 1222222221 1122222 11223 78899999999999888764 67776 799999866 7
Q ss_pred cHHHHhcc
Q 018636 156 TLEDFLGH 163 (352)
Q Consensus 156 ~l~~~l~~ 163 (352)
.|++.+..
T Consensus 477 aLe~aL~~ 484 (530)
T COG0488 477 ALEEALLD 484 (530)
T ss_pred HHHHHHHh
Confidence 77776665
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-11 Score=101.61 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=53.0
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--------------------eC---CceEEEEeCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDTPG 78 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~lvDtpG 78 (352)
|+|||.+|+|||||+|+|++... .....+. .|....+....+ .+ ...+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf-tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF-TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC-ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 68999999999999999998763 2211111 222222211111 01 24688999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
+.........+...+.. .+..+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 96543222233333333 345889999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-10 Score=92.66 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc-cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.....|+|+|.+|+|||||+|.|++...... ....|+ + .+....+..++++||||.. ..+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i-~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------I-TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------E-EEEecCCceEEEEeCCchH----------HHHHH
Confidence 3457899999999999999999987632111 011111 1 1122257788999999832 12222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~ 152 (352)
. ...+|++++|+|++..+...+...+..+... +. | +++|+||+|....
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence 2 2467999999999877777777776766543 43 5 4559999998743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-11 Score=104.65 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=87.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.....++.|+|-+++|||||+|.++...+ ...+...|+..-+.....+.-..+.++||||+.+....+..+.+ +..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-mqs 240 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-MQI 240 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-HHH
Confidence 44568999999999999999999986654 13344445544332222223456789999999885433322222 111
Q ss_pred HHhcccCCccEEEEEEecC--CCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
....+ .--.++||+.|++ ...|..+ ..+...++.+|... ++|+|+||+|.... +.+.+
T Consensus 241 ITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~ 301 (620)
T KOG1490|consen 241 ITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ 301 (620)
T ss_pred HHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence 11111 1235789999998 5666544 46777888888764 89999999999877 55544
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=87.82 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...+.++|-.++|||||+|.++.... ...-..|+....+.+.- ....+.++|.||... +.....
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~----~edmiptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY----LEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc----hhhhcccccceeEEecc-CceEEEEEecCCCcc-----------HHHHHH
Confidence 36899999999999999999975332 11111233444444433 455778999999433 344444
Q ss_pred cccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhcccc--cceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNV--FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.++.++++++||+|+. +.++..-.. +..++.+.. ..|++++.||.|..+. -.-.+.+.+ +. +..
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~E----L~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~r-----mg-L~s 151 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSE----LHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIER-----MG-LSS 151 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHH----HHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHH-----hC-ccc
Confidence 5668999999999988 333332222 222222221 1289999999999866 222222221 11 111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
........| ..|++...+++.+++++.+.-
T Consensus 152 itdREvcC~----siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 152 ITDREVCCF----SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cccceEEEE----EEEEcCCccHHHHHHHHHHHh
Confidence 111122222 235566688899888877654
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-09 Score=95.86 Aligned_cols=133 Identities=22% Similarity=0.290 Sum_probs=86.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc---------------------------e--------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---------------------------K-------------- 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t---------------------------~-------------- 56 (352)
..-+|+|.|++++||||++|+++-+...+++..+.+.. .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 34699999999999999999998766554432221100 0
Q ss_pred eeEeEEEEeeCC------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 57 TCEMKTTVLKDG------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 57 ~~~~~~~~~~~~------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
......+.++++ ..+.++|.||++-.. +...++......+|+++||+.+.+.++..++.++...-.
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 001112234332 257799999988642 233344444568999999999988888888888777655
Q ss_pred hhcccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 131 ~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
. + .+++|+.||||......+-.++.+..
T Consensus 260 ~--K---pniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 260 E--K---PNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred c--C---CcEEEEechhhhhcccHHHHHHHHHH
Confidence 4 2 17888889999876533444544443
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=85.20 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=99.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..|+.+||.+-+|||+|++..+..... ..+..++.++.-...++..+|. .+.+|||.| .+.+...
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfa--elsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsi 74 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFA--ELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSI 74 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccc--ccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHH
Confidence 368999999999999999999866541 1222222222211223333444 457899999 6777777
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..++|.+.-++++|+|.+++-+-+. ..++.......+.+...-+++|.+|+|+.+. ..+... .-..+...
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--RqVt~E-------EaEklAa~ 145 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--RQVTAE-------EAEKLAAS 145 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--ccccHH-------HHHHHHHh
Confidence 7888889999999999996655444 3456655555552211123455699998754 221110 12223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
++ -.++ .+|++++.++.+-+..+.+-
T Consensus 146 hg-M~FV-----ETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 146 HG-MAFV-----ETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred cC-ceEE-----EecccCCCcHHHHHHHHHHH
Confidence 33 3333 56788888888888766543
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=102.52 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=115.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccc-------------cCCCCCcceeeEeEEEEeeC--CceEEEEeCCCC
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGL 79 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~ 79 (352)
|.+.-.+++||-+-..|||||...|+...-+.. -.-..++|+..+...+.+.+ ...+++|||||.
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 334557899999999999999988763221000 01234567777766666644 367899999998
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
.|... ++. .++.-++++++|+|++..........+.++.+. +- .+|.|+||+|+...+.+..+.
T Consensus 136 vDFs~-------EVs----Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-~L----~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 136 VDFSG-------EVS----RSLAACDGALLVVDASQGVQAQTVANFYLAFEA-GL----AIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred ccccc-------eeh----ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-CC----eEEEeeeccCCCCCCHHHHHH
Confidence 87642 222 223357999999999988877777776666553 33 688999999998764344443
Q ss_pred HhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
. +..++..+....+ ..||+++.++.+|++.|.+.++...
T Consensus 200 q--------~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 200 Q--------LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred H--------HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCCCCC
Confidence 3 4446655555333 4688999999999999998886543
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-11 Score=86.35 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
+-+++...++|+++|-.++|||||++-|.+++....-++. ......+.+....+++++|.-| .+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~-----GFn~k~v~~~g~f~LnvwDiGG-----------qr 73 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTN-----GFNTKKVEYDGTFHLNVWDIGG-----------QR 73 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccC-----CcceEEEeecCcEEEEEEecCC-----------cc
Confidence 3455577799999999999999999999998864433333 3334444442347889999998 34
Q ss_pred HHHHHHhcccCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
.++.+...+|.++|.++||+|.++ ++..-.....+++...--..+ |++|..||-|++.. ...++
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~v--pvlIfankQdllta--a~~ee 139 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEV--PVLIFANKQDLLTA--AKVEE 139 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcc--ceeehhhhhHHHhh--cchHH
Confidence 455666778889999999999662 121111222222222111122 78888899988866 44443
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=97.42 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=101.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh---CC------------------Ccccc--------cCCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL---GR------------------KAFKA--------SAGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~---g~------------------~~~~~--------~~~~~~~t~~~~~~~~~~~~ 67 (352)
....+++++|+..+|||||+-.|+ |. ..|.- .....++|.......++. +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 345899999999999999997764 21 11000 011133455555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
...++|+|+|| .+++..-+......+|+.++|++++.. ..+..+..+-+ ...+|-. .+
T Consensus 84 k~~~tIiDaPG-----------HrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L-a~tlGi~---~l 148 (428)
T COG5256 84 KYNFTIIDAPG-----------HRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL-ARTLGIK---QL 148 (428)
T ss_pred CceEEEeeCCc-----------hHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH-HHhcCCc---eE
Confidence 77899999999 233444444455678999999999844 44444554443 3445643 79
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
|+++||+|..+-+...+++.... +..++..++-..-- -.-+++|+-.+.++.+.
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~~~~-v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYNPKD-VPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCCccC-CeEEecccccCCccccc
Confidence 99999999986555777777776 77777777643100 00125566666665553
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-10 Score=81.52 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE--EEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+++++|+.|+|||.|+........ . ...+.|....... +.+ .+. .+.||||.| .+.+..
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-k---DdssHTiGveFgSrIinV-GgK~vKLQIWDTAG-----------QErFRS 73 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-K---DDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAG-----------QERFRS 73 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-c---ccccceeeeeecceeeee-cCcEEEEEEeeccc-----------HHHHHH
Confidence 5899999999999999988774432 2 1222333332222 222 333 567999999 677787
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
....+|.++.+.++|.|++++-+-... .||.-+..+....+ .++++.||.|+...
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh
Confidence 788889999999999999855544443 35555555544422 34444599998755
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-11 Score=92.43 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...|+|+|++|+|||+|+..|..... ..++|.......+.. ..+..+.+||+||..... ..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~------~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~ 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT------VPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDE 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---------B---SSEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc------CCeeccccCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHh
Confidence 36899999999999999999986533 111221111111111 246688999999966532 222222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhc----ccccceEEEEEeCCCCCCc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ilv~nk~D~~~~ 152 (352)
+. ....+-+|+||+|.+ .+...-....+.+-.++. .....|++|+.||.|+...
T Consensus 70 ~~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 70 LK-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HH-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hh-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 11 234688999999987 332222333333322221 1112389999999999865
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=87.12 Aligned_cols=167 Identities=15% Similarity=0.113 Sum_probs=105.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc--cc-ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA--FK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~--~~-~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....|+|+|.-++|||||+-.+-.... +. ..++....|+.-....+.+ ++..+.+||.-| .+.+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgG-----------Qe~lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGG-----------QESLR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCC-----------hHHHH
Confidence 347899999999999999977632111 00 1133334455555666666 578889999988 34455
Q ss_pred HHHhcccCCccEEEEEEecCC--CCCHHHHHHHHHH--HHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRL--PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~--~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
+....+|..+|+++|++|+++ ++.......-+.+ ..+.|. |++++.||-|..+. ....+.-.. +.
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~----p~L~lankqd~q~~--~~~~El~~~-----~~ 152 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGA----PVLVLANKQDLQNA--MEAAELDGV-----FG 152 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCC----chhhhcchhhhhhh--hhHHHHHHH-----hh
Confidence 555567788999999999982 3322211111111 222233 99999999998766 444432221 22
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
. .+..+.+-.. ..++|+.++.++.+=+.++...++.+
T Consensus 153 ~-~e~~~~rd~~---~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 L-AELIPRRDNP---FQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred h-hhhcCCccCc---cccchhhhcccHHHHHHHHHHHHhhc
Confidence 1 3333333333 34668999999999999988888765
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=96.99 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=56.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~~~~ 85 (352)
|+|||.+|+|||||+|+|+|... ..... ..+|.......+.+.+. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 68999999999999999999875 22111 22333433333333222 14889999999865443
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
...+...+... ...+|++++|+++.
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence 34444444433 35789999999864
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=83.86 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|..=+|||||+=...... |...... |.. .....+.+. ..-.+.||||.| .+.+...
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHls---TlQASF~~kk~n~ed~ra~L~IWDTAG-----------QErfHAL 78 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENK-FNCKHLS---TLQASFQNKKVNVEDCRADLHIWDTAG-----------QERFHAL 78 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhh-cchhhHH---HHHHHHhhcccccccceeeeeeeeccc-----------hHhhhcc
Confidence 799999999999999986554222 2111100 110 011111111 133567999999 4444444
Q ss_pred HhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
-..+|.+.++.++|+|++++-+- .-+.|+..++.++|..+ .++||.||+|+... ..+.. ++ .....+.
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee--R~Vt~--qe-----Ae~YAes 147 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE--RQVTR--QE-----AEAYAES 147 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh--hhhhH--HH-----HHHHHHh
Confidence 45678899999999999954442 33467888888899876 78888999998754 22111 00 1122344
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..|+ .+||+++.++.+|++.+...+
T Consensus 148 vGA~y~------eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 148 VGALYM------ETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hchhhe------ecccccccCHHHHHHHHHHHH
Confidence 455554 468888999999998776544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=107.64 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=74.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee--EeEEEEeeCCc--eEEEEeCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDGQ--VVNVIDTPGLFD 81 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~~--~~~lvDtpG~~~ 81 (352)
+.++..+... .+.+|+|+|+||||||||+++|+|... +..|.++... .+.++. +.. .+..-.|+ +..
T Consensus 327 il~~isl~i~--~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~igy~~--Q~~~~~l~~~~~~-~~~ 397 (638)
T PRK10636 327 ILDSIKLNLV--PGSRIGLLGRNGAGKSTLIKLLAGELA----PVSGEIGLAKGIKLGYFA--QHQLEFLRADESP-LQH 397 (638)
T ss_pred eeccceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCCEEEEEec--CcchhhCCccchH-HHH
Confidence 4455555544 458999999999999999999999876 5556554321 122211 111 00000000 000
Q ss_pred C-CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcH
Q 018636 82 L-SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTL 157 (352)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l 157 (352)
. ..........+..++... +...-..-..+ ..+|++++.++.++..+.... +++|+ +|++|.... ..+
T Consensus 398 ~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~-~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~l 469 (638)
T PRK10636 398 LARLAPQELEQKLRDYLGGF--GFQGDKVTEET-RRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QAL 469 (638)
T ss_pred HHHhCchhhHHHHHHHHHHc--CCChhHhcCch-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence 0 000000011112222111 11000000122 389999999999999887653 55555 699998766 667
Q ss_pred HHHhcc
Q 018636 158 EDFLGH 163 (352)
Q Consensus 158 ~~~l~~ 163 (352)
.+++..
T Consensus 470 ~~~L~~ 475 (638)
T PRK10636 470 TEALID 475 (638)
T ss_pred HHHHHH
Confidence 766654
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.1e-10 Score=96.12 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccc-ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+..|+--.|||||+.+++|...-. ......+.|.+..+++... .+..+.+||.||+.+ +.+.+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 57889999999999999999875411 1123445677888888777 455889999999543 4444444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
...+.|..++|+++++.+.......+..+.. +|-. +.++|+||+|..+. ..+++.+++ ++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence 5568899999999987888888777776654 5653 78999999999876 666655544 333322
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+.-.+....|+.++.++.+|.+.+.++.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 2223446778899999999999999988
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-09 Score=77.55 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+.+|-.++||||++-.|.-... .....|+...+..+.+ .+-.+.++|.-| ...++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGG-----------qd~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGG-----------QDKIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccC-----------chhhhHH
Confidence 3468999999999999999977743222 1222355566666666 677889999998 3446666
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccc--eEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD--YMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~ 173 (352)
...+|.+..+++||+|..++ +.-+..+-++- ..++..-+. +++|+.||-|+... ....+.+++. +-
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh-~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le---------Le 146 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEARNELH-RIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE---------LE 146 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHHHHHH-HHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc---------cc
Confidence 77788999999999998733 33333333322 222322111 66667799999876 1123333332 11
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..-+.++++ .+.++.++.++.+=+.++...
T Consensus 147 ~~r~~~W~v----qp~~a~~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 147 RIRDRNWYV----QPSCALSGDGLKEGLSWLSNN 176 (180)
T ss_pred cccCCccEe----eccccccchhHHHHHHHHHhh
Confidence 111333333 345666677777766666544
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=95.05 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|++||-+||||||||+.|++....+. ..-..|.+........+.|..+.+.||.||...- ...+...|...+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATLe 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATLE 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHHH
Confidence 37999999999999999999996654221 1222344555555566678999999999997632 1222333333222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhccc---ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKN---VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~---~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
. ...+|+++.|+|++++.-...+. .+..+.. +|-. ...+++=|-||+|.... ++..
T Consensus 254 e-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~-------~~e~----------- 313 (410)
T KOG0410|consen 254 E-VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEED-------EVEE----------- 313 (410)
T ss_pred H-HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccccc-------cCcc-----------
Confidence 1 23679999999999555444444 4444443 3431 12244455677776544 1111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.-+.....|+.++.++.++++.++..+.
T Consensus 314 -------E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 -------EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred -------ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0112346688889999999998877654
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=99.84 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~ 80 (352)
....+|+|||.+|+|||||+|+|++... ..... ..+|.......+.+.+ ...+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~-pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENF-PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCC-CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 4457999999999999999999988764 22111 1223343343333322 2258899999998
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
........+...+.. ....+|++++|+++.
T Consensus 97 ~ga~~g~gLg~~fL~----~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLS----HIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHH----HHHHCCEEEEEEeCC
Confidence 654333334444433 335789999999974
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=111.12 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCC--------------CcceeeEeEEEEee---------CCceEEE
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--------------GVTKTCEMKTTVLK---------DGQVVNV 73 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~--------------~~t~~~~~~~~~~~---------~~~~~~l 73 (352)
+.-.+|+|+|+.++|||||++.|+...........+ ++|.......+.+. .+..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445799999999999999999998643211111111 12222222223331 1456899
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 74 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
+||||..+ +...+..+...+|++++|+|+...+...+...++.+... +. |+++++||+|..
T Consensus 97 iDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~~----p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-RI----RPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-CC----CEEEEEEChhhh
Confidence 99999655 222233344678999999999877888888777766653 32 899999999987
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=97.84 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCC----------------ceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~ 82 (352)
.+|+|||.+|+|||||+|+|+|... .. ...+ .|.......+.+.+. ..+.++||||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v--~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EA--ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-ee--cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 6899999999999999999999873 22 2222 233333333333221 25889999999864
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
......+...+.. ....+|++++|+++.
T Consensus 80 a~~g~glg~~fL~----~i~~aD~li~VVd~f 107 (364)
T PRK09601 80 ASKGEGLGNQFLA----NIREVDAIVHVVRCF 107 (364)
T ss_pred CChHHHHHHHHHH----HHHhCCEEEEEEeCC
Confidence 4333334444433 345889999999974
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-10 Score=90.87 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
||+|+|+.|+||||..+.|.+...... ...-+.|.......+.......+.+||.||......... .......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~------~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF------NSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH------TCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc------cccHHHH
Confidence 689999999999999999997754111 222234555555555443566899999999876432210 0001112
Q ss_pred cCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 101 KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 101 ~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+.++++++||+|+. ..+...-......+..+......-++.+++.|+|....
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 36889999999998 44433333333333332221222278899999999865
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=108.17 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeCCce-----EEEEeCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDGQV-----VNVIDTPG 78 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~-----~~lvDtpG 78 (352)
+.++..+... .+.+|+|+|+||+|||||+++|+|... +..|.+..... +.++. +... .++.|...
T Consensus 334 il~~vsl~i~--~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~i~y~~--q~~~~l~~~~tv~e~l~ 405 (635)
T PRK11147 334 LVKDFSAQVQ--RGDKIALIGPNGCGKTTLLKLMLGQLQ----ADSGRIHCGTKLEVAYFD--QHRAELDPEKTVMDNLA 405 (635)
T ss_pred EEcCcEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCCcEEEEEe--CcccccCCCCCHHHHHH
Confidence 3444444443 447999999999999999999999865 55555443211 11111 1100 01111100
Q ss_pred CCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchh
Q 018636 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEK 155 (352)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~ 155 (352)
+.............+...+... +...-..-..+ ..+|++++.++.++..+.... +++|+ +|++|.... .
T Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~-~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~ 477 (635)
T PRK11147 406 EGKQEVMVNGRPRHVLGYLQDF--LFHPKRAMTPV-KALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--E 477 (635)
T ss_pred hhcccccccchHHHHHHHHHhc--CCCHHHHhChh-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--H
Confidence 0000000000011111111110 00000000112 379999999999999887653 45555 699997755 5
Q ss_pred cHHHHhcc
Q 018636 156 TLEDFLGH 163 (352)
Q Consensus 156 ~l~~~l~~ 163 (352)
.+.+.+..
T Consensus 478 ~l~~~l~~ 485 (635)
T PRK11147 478 LLEELLDS 485 (635)
T ss_pred HHHHHHHh
Confidence 55555543
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=85.92 Aligned_cols=160 Identities=23% Similarity=0.215 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|..|+|||+|....++... ......|....+.. ..+ ++ ..+.|+||+|..... .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f----~~~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~~-----------~ 66 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF----VEDYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEFS-----------A 66 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc----ccccCCCccccceEEEEE-CCEEEEEEEEcCCCcccCh-----------H
Confidence 37999999999999999988776654 22223333222222 223 33 345689999943321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+....|++++|++++++-|-.+.. +...+....+. ...|+++|.||+|+...- ..-.+. -..+..
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R-~V~~ee--------g~~la~ 136 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERER-QVSEEE--------GKALAR 136 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhcc-ccCHHH--------HHHHHH
Confidence 1222335679999999999665544433 33334332222 224999999999997530 111111 122233
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.++..++ .+||+.+.++++++..+...+..
T Consensus 137 ~~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 137 SWGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred hcCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 3333433 45677778888888877776544
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-10 Score=108.94 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC--------------CCcceeeEeEEEEee---------------C
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------SGVTKTCEMKTTVLK---------------D 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~---------------~ 67 (352)
..-++|+|+|+.++|||||++.|+........... .+.|.......+.+. .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 44579999999999999999998743311000000 112222222233331 2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..++++||||..+ +......+...+|+.++|+|+...+.......++.+... +. |+++++||+
T Consensus 97 ~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~~----p~i~~iNK~ 160 (843)
T PLN00116 97 EYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RI----RPVLTVNKM 160 (843)
T ss_pred ceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-CC----CEEEEEECC
Confidence 56789999999544 222233334578999999999888887777777766543 32 899999999
Q ss_pred CCC
Q 018636 148 DDL 150 (352)
Q Consensus 148 D~~ 150 (352)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 987
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-10 Score=101.20 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..||+|||.-|+||||||-+|+.....+..|..-. ++.. .-..+.....+++||..-.+ ....+.+++
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~---~~~~l~~Ei---- 77 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSD---DRLCLRKEI---- 77 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccc---hhHHHHHHH----
Confidence 48999999999999999999998765333232211 1111 11122445578999984222 112223333
Q ss_pred hcccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+|++.++...+ ..+..-...||-++...+|.....|+|+|.||+|........++.. ...++..
T Consensus 78 ----rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pim~~ 145 (625)
T KOG1707|consen 78 ----RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPIMIA 145 (625)
T ss_pred ----hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHHHHH
Confidence 4678888888776 2344556678889999988777779999999999876521222321 1112221
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|..++..+.+||++..++.+++..-.+.+-.
T Consensus 146 ----f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 146 ----FAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred ----hHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 2223344566777777778877766665544
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=109.46 Aligned_cols=118 Identities=18% Similarity=0.273 Sum_probs=73.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC--------------cccccCCCCCcceeeEeEE----EEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK--------------AFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~--------------~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~lvDtpG~ 79 (352)
.-++|+++|+.|+|||||++.|+... .+.......+.|....... +.+ ++..+.++||||.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 44799999999999999999886321 0000000012232222111 223 5678899999998
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+.. ..+. .++..+|++++|+|+...+.......+..+... +. |.++++||+|....
T Consensus 97 ~~f~-------~~~~----~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFG-------GDVT----RAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-NV----KPVLFINKVDRLIN 153 (720)
T ss_pred cccH-------HHHH----HHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-CC----CEEEEEEChhcccc
Confidence 7632 2222 233578999999998866666666665554332 22 67899999998643
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=93.22 Aligned_cols=133 Identities=18% Similarity=0.110 Sum_probs=72.9
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.++||||..+.... ......+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 35789999997653321 222344444444322 789999999974455555443333321110011239999999999
Q ss_pred CCCcchhcHHHHhcccCC-------------------hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECP-------------------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. ..++........ ..+-..+...+.. ....+.|+.++.++.+|++.|.+.+.
T Consensus 174 ~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~----~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 174 LLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLP----VRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCC----CcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9866 333332221000 0011112222321 12235677788999999999988874
Q ss_pred h
Q 018636 210 Q 210 (352)
Q Consensus 210 ~ 210 (352)
.
T Consensus 248 ~ 248 (253)
T PRK13768 248 G 248 (253)
T ss_pred C
Confidence 3
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-10 Score=86.58 Aligned_cols=116 Identities=22% Similarity=0.177 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.++++|||..++|||+|+-..+-... +.....|+...+. .+.+.++.. +.+|||.|..+- .+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f----p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF----PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC----cccccCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence 37999999999999999988875433 3344444433222 234422554 578999996653 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.-..+|+..|+|++|+++.++.+-. ...++..++..+.. + |+|+|.+|.|+..+
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-v--piiLVGtk~DLr~d 124 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-V--PIILVGTKADLRDD 124 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-C--CEEEEeehHHhhhC
Confidence 1134889999999999988555544 34577777776643 3 99999999999854
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-10 Score=88.05 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
...+|+++|.+|+|||||+|+|.|......+..++. |+.... +..+..++++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~~~----~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVWQY----ITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeEEE----EEcCCCEEEEECcCC
Confidence 347899999999999999999999876555555443 333222 223455889999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=88.01 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC-CcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
-..|+|+|++++|||||+|.|+|. ..|..+.....+|.....+...+. .+..+.++||||+++...........+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 368999999999999999999998 366665555556665555444332 25788999999999876543111111111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
+.. --.++++|..+.. ....+...+..+.+
T Consensus 87 -l~~--llss~~i~n~~~~--~~~~~~~~l~~~~~ 116 (224)
T cd01851 87 -LAT--LLSSVLIYNSWET--ILGDDLAALMGLLK 116 (224)
T ss_pred -HHH--HHhCEEEEeccCc--ccHHHHHHHHHHHH
Confidence 111 1347788877653 44555555555443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=90.66 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCccc-ccCCCCCcceeeEeEE--------------EEe-----------eCCceEE
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKT--------------TVL-----------KDGQVVN 72 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~--------------~~~-----------~~~~~~~ 72 (352)
..+|+++|+...|||||.++|+|--... +.....++|....+.. +.. .--+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 4899999999999999999999853211 0011111222111110 000 0024678
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 73 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
++|.|| .+.+...+.+...-.|+.++|+.++++.. ...+..|..+ ...|-. +++++=||+|+.+
T Consensus 90 fVDaPG-----------He~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik---~iiIvQNKIDlV~ 154 (415)
T COG5257 90 FVDAPG-----------HETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIK---NIIIVQNKIDLVS 154 (415)
T ss_pred EeeCCc-----------hHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccc---eEEEEecccceec
Confidence 999999 33333333333334588999999884332 3333333322 234433 8999999999997
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. +...+. ++++.+...+.+..-.+..+.||..+.+++.|++.|.+.++.
T Consensus 155 ~--E~AlE~--------y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 155 R--ERALEN--------YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred H--HHHHHH--------HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 6 333222 333333334444444466789999999999999999998865
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-10 Score=91.83 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=79.5
Q ss_pred CCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-------------EeEEEEe--eC
Q 018636 3 ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------EMKTTVL--KD 67 (352)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-------------~~~~~~~--~~ 67 (352)
++.+.++.++..+. +..++|+|+||||||||+++|+|-.. +..|.+.... ...++.. ..
T Consensus 14 ~~~il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~----p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 14 GKPILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLK----PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred CeeEEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 34455666666665 48999999999999999999999766 4444433321 1111111 11
Q ss_pred CceEEEEeCCCCCCCC-------CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLS-------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
...+++.|.--++... .+..+ .+.+..++. ..+..-+....-+.+|++++.++...+.+.... ++
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D-~~~v~~aL~----~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~i 159 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKED-EEIVEEALE----LLGLEHLADRPVDELSGGERQRVLIARALAQET---PI 159 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhH-HHHHHHHHH----HhCcHHHhcCcccccChhHHHHHHHHHHHhcCC---CE
Confidence 3345666654332111 11111 111222221 111111111112488899999988888877663 56
Q ss_pred EEE---EeCCCCCCcchhcHHHHhcc
Q 018636 141 IVV---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 141 ilv---~nk~D~~~~~~~~l~~~l~~ 163 (352)
+++ +|++|.... ..+.+.+.+
T Consensus 160 LLLDEPTs~LDi~~Q--~evl~ll~~ 183 (258)
T COG1120 160 LLLDEPTSHLDIAHQ--IEVLELLRD 183 (258)
T ss_pred EEeCCCccccCHHHH--HHHHHHHHH
Confidence 665 699998754 444444443
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=73.96 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+..++|.-|+|||.|+.-.+.+..+..-| .++.+......+++. +...+.+|||.| .+.+.....
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcp--htigvefgtriievsgqkiklqiwdtag-----------qerfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAG-----------QERFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCC--cccceecceeEEEecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 478899999999999999887655422112 222222222223331 234668999999 566777777
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
++|.++.+.+.|.|++.+-+-.. ..+|.-.+.+..+.. -++++.||.|+...
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt--~i~lignkadle~q 131 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIFLIGNKADLESQ 131 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCce--EEEEecchhhhhhc
Confidence 78899999999999984433322 345555555544321 34455699998644
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-09 Score=88.00 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc--cc---------c---c-----------------CCCCCcceeeEeEEEEee
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA--FK---------A---S-----------------AGSSGVTKTCEMKTTVLK 66 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~--~~---------~---~-----------------~~~~~~t~~~~~~~~~~~ 66 (352)
+-+|++-+|...-||||||-.|+-... +. + + .-..++|.+..+.++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 448999999999999999987752210 00 0 0 11134666666666655
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
..+.+.+.|||| .+++.+-+......+|+.++++|+...+-...++ -..+..++|-. ++++.+||
T Consensus 84 ~KRkFIiADTPG-----------HeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPG-----------HEQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVNK 148 (431)
T ss_pred ccceEEEecCCc-----------HHHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEee
Confidence 788999999999 5555555555556789999999997555444443 34555566654 88999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~ 197 (352)
+|+.+-+.+.++++... +..+....+..... .++.||..+.++
T Consensus 149 mDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~---~IPiSAl~GDNV 191 (431)
T COG2895 149 MDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVR---FIPISALLGDNV 191 (431)
T ss_pred ecccccCHHHHHHHHHH-----HHHHHHHcCCCcce---EEechhccCCcc
Confidence 99987766778877776 66677766644322 224455444443
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.9e-09 Score=83.80 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=65.1
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+-.++|....+ ..-||++||.+.+|||||+..|++... .......|+ .|-...+.+ ++..+.++|.||+....
T Consensus 50 ~kg~GFeV~Ks--GdaRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 50 GKGEGFEVLKS--GDARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGA 123 (364)
T ss_pred CCCCCeeeecc--CCeEEEEecCCCccHHHHHHHhhcchh---hhhceeeeEEEeecceEEe-cCceEEEecCccccccc
Confidence 34455544443 448999999999999999999987543 223333444 343333344 89999999999998754
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.....-++++ ......+|.++.|+|++
T Consensus 124 sqgkGRGRQv----iavArtaDlilMvLDat 150 (364)
T KOG1486|consen 124 SQGKGRGRQV----IAVARTADLILMVLDAT 150 (364)
T ss_pred ccCCCCCceE----EEEeecccEEEEEecCC
Confidence 3322212222 22335679999999987
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-09 Score=99.46 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
|+..+.++.++... .+.+|+|+|+||||||||+++|+|... +..|.++.
T Consensus 12 g~~~~l~~vs~~i~--~Ge~v~LvG~NGsGKSTLLkiL~G~~~----pd~G~I~~ 60 (638)
T PRK10636 12 GVRVLLDNATATIN--PGQKVGLVGKNGCGKSTLLALLKNEIS----ADGGSYTF 60 (638)
T ss_pred CCceeecCcEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEe
Confidence 34445566666654 348999999999999999999999765 55555443
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-10 Score=86.33 Aligned_cols=62 Identities=34% Similarity=0.410 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccccc-----CCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
..++|+|++|||||||+|.|++......+ ...|..|+ ....+. . .....|||||||.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l--~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L--PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E--TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c--CCCcEEEECCCCCccccc
Confidence 68999999999999999999998543322 12333333 223222 2 234579999999876543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=86.28 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..+.|+||+|...... .+ ...+|.++++.... ++.+...+. ..+... +.++|+||+
T Consensus 126 g~D~viidT~G~~~~e~-------~i-------~~~aD~i~vv~~~~---~~~el~~~~--~~l~~~----~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV-------DI-------ANMADTFVVVTIPG---TGDDLQGIK--AGLMEI----ADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhhh-------HH-------HHhhceEEEEecCC---ccHHHHHHH--HHHhhh----ccEEEEEcc
Confidence 56778999999764211 11 12456677664322 223333222 112222 789999999
Q ss_pred CCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|.... ......... +..-+.....+...+ ....++|+.++.++.+|++.+.+.+..
T Consensus 183 Dl~~~--~~~~~~~~~-----~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~ 239 (300)
T TIGR00750 183 DGEGA--TNVTIARLM-----LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTF 239 (300)
T ss_pred cccch--hHHHHHHHH-----HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 98865 221110000 100011101110001 123467888999999999999887543
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-09 Score=99.41 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=72.2
Q ss_pred EcCCCCCHHHHHHHhhCCCcc---cccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 018636 25 LGRTGNGKSATGNSILGRKAF---KASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 25 vG~~g~GKSTlin~l~g~~~~---~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~ 88 (352)
+|+.|+|||||++.|+..... ..... ..++|.......+.+ .+..+++|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999533211 00000 122344444445555 7889999999996541
Q ss_pred HHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...... ++..+|++++|+|++..........+..+... +. |+++++||+|....
T Consensus 74 -~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~~----p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-GV----PRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 122222 33478999999999866666666666655442 32 89999999998754
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=85.20 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
..+|+|+|.+|+|||||+|+|+|......+..+| .|...+... -+..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg-~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPG-VTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC-eEcceEEEE----eCCCEEEEECcCC
Confidence 3699999999999999999999987755555443 233332222 2356889999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=84.86 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeC-----------------CceEEEEeCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD-----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~-----------------~~~~~lvDtpG~~ 80 (352)
..+++|||.+|+|||||+|+|+.... . ....+ +|.......+.+++ -..+.++|.+|+.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a-~--~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV 78 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA-E--IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLV 78 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc-c--ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccC
Confidence 37899999999999999999997663 1 12222 33333332222211 1246799999997
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEec
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV 113 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 113 (352)
......+.++..+..-+. .+|+++.|+++
T Consensus 79 ~GAs~GeGLGNkFL~~IR----evdaI~hVVr~ 107 (372)
T COG0012 79 KGASKGEGLGNKFLDNIR----EVDAIIHVVRC 107 (372)
T ss_pred CCcccCCCcchHHHHhhh----hcCeEEEEEEe
Confidence 765555555666655443 67888888875
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-09 Score=88.37 Aligned_cols=132 Identities=17% Similarity=0.291 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee------CC-----------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK------DG----------------------- 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~----------------------- 68 (352)
...-|.++|....|||||||.|+..+.......+. .|+..-+. +.+. .|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpE-PTtd~Fi~-vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPE-PTTDRFIA-VMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCC-CCcceeEE-EEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 34689999999999999999999876521111111 12221111 1000 00
Q ss_pred ------------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC--HHHHHHHHHHHHhhcc
Q 018636 69 ------------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS--QEEETAVHRLPNLFGK 134 (352)
Q Consensus 69 ------------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~l~~~~~~~~~ 134 (352)
..++||||||+.......-.-.-.+...+......+|.|++++|+. .++ .+-.+.+..+ -|.
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~aL---kG~ 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDAL---KGH 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHHh---hCC
Confidence 2478999999987543322212233444444447899999999998 554 4444444443 344
Q ss_pred cccceEEEEEeCCCCCCcchhcHHH
Q 018636 135 NVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 135 ~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
+- .+-||+||.|..+. +.|..
T Consensus 211 Ed--kiRVVLNKADqVdt--qqLmR 231 (532)
T KOG1954|consen 211 ED--KIRVVLNKADQVDT--QQLMR 231 (532)
T ss_pred cc--eeEEEeccccccCH--HHHHH
Confidence 32 68899999999876 55544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=83.36 Aligned_cols=47 Identities=28% Similarity=0.215 Sum_probs=36.6
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..+.+++.+.... +..|+|+|++|||||||+|+|+|-.. ++.|.+..
T Consensus 16 ~~vl~~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~ 62 (248)
T COG1116 16 VEVLEDINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLL 62 (248)
T ss_pred eEEeccceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 3456666666654 48999999999999999999999887 55555444
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=100.67 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=73.2
Q ss_pred CCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC-----------------ceEEEEeCCCCCCCCCCcHHHHHH
Q 018636 30 NGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 30 ~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
++|||||..|.+..+ ..--.|++|.....+.+.+... ..+.+|||||...
T Consensus 472 ~~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------- 538 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------- 538 (1049)
T ss_pred cccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------
Confidence 349999999998887 3344677787776666554211 1378999999432
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+.......+..+|++++|+|+++.+.......+..+... +. |+++++||+|+..
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~i----PiIVViNKiDL~~ 592 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-KT----PFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-CC----CEEEEEECCCCcc
Confidence 222222344678999999999877777777777766653 32 8999999999863
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=102.41 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=75.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC--------------CCcceeeEeEEEEe--e-CCceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------SGVTKTCEMKTTVL--K-DGQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--------------~~~t~~~~~~~~~~--~-~~~~~~lvDtpG~~ 80 (352)
.-++|+++|+.++|||||+.+|+........... .++|.......+.+ . .+..++++||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4468999999999999999998643210000000 11222222222222 1 35678999999987
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+. ...+.. +...+|++++|+|+...+.......+..+... +. |.++++||+|...
T Consensus 99 df-------~~~~~~----~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DF-------GGDVTR----AMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred Ch-------HHHHHH----HHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 63 223332 33467999999999877777777777765443 33 6789999999763
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-09 Score=92.10 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--------------------eC---CceEEEEeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~lvDt 76 (352)
.+|+|||.+|+|||||+|+|++... ..... ...|.........+ .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999998754 21111 11222222221111 11 235789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
||+.........+...+.. ....+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~----~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLD----DLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 9997643222333434433 345789999999985
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-09 Score=92.39 Aligned_cols=133 Identities=17% Similarity=0.081 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc-eEEEEeCCCCCC--CCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFD--LSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~lvDtpG~~~--~~~~~~~~~~~~~ 94 (352)
..-+|++||+||||||||+++++|... +..|.+..........+.+.. ...-.|-..+.. ....+..-.+.+.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~----p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r 490 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQ----PTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMR 490 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccc----cccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHH
Confidence 346999999999999999999999987 666655543322221110110 001111111100 0000000123333
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+..+ +..+-.-+.... .+|.+++.++-++...... |.++| +||+|...- ..+.++++.
T Consensus 491 ~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiNe 554 (614)
T KOG0927|consen 491 SILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAINE 554 (614)
T ss_pred HHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHhc
Confidence 333322 444445555566 8899999999988887765 66666 599999876 777777776
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=78.48 Aligned_cols=127 Identities=16% Similarity=0.216 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|.++|..+||||+|+--|..... .+++|... ....+.. +...+++||.||... +...+..++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~------~~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~ 104 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH------RGTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLK 104 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc------cCeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHcc
Confidence 6899999999999999866553322 22222211 1111222 445579999999432 2333443333
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc----cccceEEEEEeCCCCCCc-chhcHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK----NVFDYMIVVFTGGDDLED-HEKTLEDFLG 162 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~ilv~nk~D~~~~-~~~~l~~~l~ 162 (352)
.. ..+-+++||+|.. -+...-+..-+++-..+.. .-..|++|.-||-|+... +.+.+.+.+.
T Consensus 105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE 171 (238)
T KOG0090|consen 105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE 171 (238)
T ss_pred cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH
Confidence 22 2678899999877 4444333333333222211 111277788899999865 2233444333
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-10 Score=97.79 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..||++=+.++.+++.+|.+ |.+++ +||+|...- .||++|+..
T Consensus 197 ~slSGGWrMrlaLARAlf~~----pDlLLLDEPTNhLDv~av--~WLe~yL~t 243 (582)
T KOG0062|consen 197 KSLSGGWRMRLALARALFAK----PDLLLLDEPTNHLDVVAV--AWLENYLQT 243 (582)
T ss_pred cccCcchhhHHHHHHHHhcC----CCEEeecCCcccchhHHH--HHHHHHHhh
Confidence 48899999999999999987 77777 499999977 999999987
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-09 Score=82.56 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
...+|+++|.+|+|||||+|+|++...+..+ .+..|+..... +. .+..++++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~--~~~~~t~~~~~-~~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVG--NVPGTTTSQQE-VK--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccccc--CCCCcccceEE-EE--ecCCEEEEECCCC
Confidence 4589999999999999999999997754432 22333333222 22 2456889999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-08 Score=92.83 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=83.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh---CCCcccccCC-------------CCCcceeeEeEEEEeeC-CceEEEEeCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL---GRKAFKASAG-------------SSGVTKTCEMKTTVLKD-GQVVNVIDTPGL 79 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~ 79 (352)
..-++|+|+|+..+|||||...|+ |......... ..++|.........| . +..+++|||||.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence 345799999999999999997774 2221100011 123455555556677 5 489999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.|. ..++.+.+. -+|+.++|+|+...........++.+... + + |.++++||+|....
T Consensus 87 VDF-------t~EV~rslr----vlDgavvVvdaveGV~~QTEtv~rqa~~~-~--v--p~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDF-------TIEVERSLR----VLDGAVVVVDAVEGVEPQTETVWRQADKY-G--V--PRILFVNKMDRLGA 143 (697)
T ss_pred ccc-------HHHHHHHHH----hhcceEEEEECCCCeeecHHHHHHHHhhc-C--C--CeEEEEECcccccc
Confidence 875 344444443 56999999999877777777777776654 3 2 89999999999876
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-09 Score=80.39 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..++++|+|..++||||+|........ .- ....++.++.....+.+. ......+|||.| .+++...
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif-Tk-dykktIgvdflerqi~v~~Edvr~mlWdtag-----------qeEfDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TK-DYKKTIGVDFLERQIKVLIEDVRSMLWDTAG-----------QEEFDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc-cc-ccccccchhhhhHHHHhhHHHHHHHHHHhcc-----------chhHHHH
Confidence 347999999999999999998874332 11 111111121111111110 123446889998 3444444
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...+|.++.+.++|++.+++.+-+. ..+-+.+..-++. + |.++|-||+|+.++
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-I--PtV~vqNKIDlved 139 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-I--PTVFVQNKIDLVED 139 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-C--CeEEeeccchhhHh
Confidence 5567789999999999886665433 3455555555553 3 99999999999866
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.9e-09 Score=79.61 Aligned_cols=57 Identities=33% Similarity=0.444 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.+++++|.+|+|||||+|.|++..........+ .|.... .+.. +..++++||||+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~i~DtpG~~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPG-KTKHFQ--TIFL--TPTITLCDCPGLVF 140 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC-cccceE--EEEe--CCCEEEEECCCcCC
Confidence 489999999999999999999887643322222 233222 2233 23678999999854
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=81.92 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCC-CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGK 91 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~---~~~~~~ 91 (352)
.+...+++++|.+|+|||||||.++......-... ..+.|.....+. -+..++++|.||++..... ..++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 45568999999999999999999986653111111 111222221111 3778899999996543221 122222
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
-...++... ...-.++++++++.++...|...+.++.+. + + |+.+|+||||....
T Consensus 209 ~t~~Y~leR-~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-~--V--P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLER-ENLVRVFLLVDASVPIQPTDNPEIAWLGEN-N--V--PMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhh-hhhheeeeeeeccCCCCCCChHHHHHHhhc-C--C--CeEEeeehhhhhhh
Confidence 222233222 344445555677667777777777777663 2 2 89999999998744
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-09 Score=84.79 Aligned_cols=57 Identities=28% Similarity=0.311 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc------cCCCCC-cceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
..+|+|+|.+|+|||||+|+|++...... ..+..+ .|..... +.. +..++||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--Eec--CCCCEEEeCcCC
Confidence 36899999999999999999998653211 122222 2222222 222 235789999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9e-09 Score=76.41 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee----C------CceEEEEeCCCCCCCCCCcHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----D------GQVVNVIDTPGLFDLSAGSEFV 89 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~------~~~~~lvDtpG~~~~~~~~~~~ 89 (352)
++...+|.+|+|||||+-..+.......-.+. +..+.....+.+. + ...+.+|||.|
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsT--VGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG----------- 76 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFIST--VGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG----------- 76 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEE--eecccccceEEEeccCCCCCCcceEEEEeeecccc-----------
Confidence 46677899999999999777654321100111 1111111111110 0 12457899999
Q ss_pred HHHHHHHHhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHh-hcccccceEEEEEeCCCCCCcchhcHHHHhcccCCh
Q 018636 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (352)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~ 167 (352)
.+.+.+.....+..+-++++++|+++.-+- .-+.|+..++.. +.... -++++.||+|+... ..+.+.
T Consensus 77 QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~P--DivlcGNK~DL~~~--R~Vs~~------- 145 (219)
T KOG0081|consen 77 QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENP--DIVLCGNKADLEDQ--RVVSED------- 145 (219)
T ss_pred HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCC--CEEEEcCccchhhh--hhhhHH-------
Confidence 566666666666788999999999843332 223444444332 12221 35566899998755 333321
Q ss_pred hHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+....+-.|+. +||-++.++.+-++.+..++
T Consensus 146 qa~~La~kyglPYfE------TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 146 QAAALADKYGLPYFE------TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHHHhCCCeee------eccccCcCHHHHHHHHHHHH
Confidence 134466777777775 45556666666666554444
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=86.16 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 87 (352)
...+|+|+|.+|+|||||+|+|+|.....++..++ +|...+. +. -+..+.++||||+..+...+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPG-VTKAQQW--IK--LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCC-eEEEEEE--EE--eCCcEEEEECCCcCCCCCCcH
Confidence 44799999999999999999999987644444433 3444332 22 245688999999987654443
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=89.57 Aligned_cols=61 Identities=25% Similarity=0.401 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..++|+|.+|+|||||||+|+|......+..+ |..|+ ....+.+ ..+ ..|+||||+.....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l--~~~--~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF--PHG--GDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--cCC--CEEEECCCCCcccC
Confidence 35899999999999999999998764433322 22333 3333332 122 35999999987654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=94.27 Aligned_cols=43 Identities=16% Similarity=-0.040 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++++.++.++..++.. |-+++ +|++|.... .++.+++..
T Consensus 155 ~~LSgGekqRv~LAraL~~~----P~lLLLDEPt~~LD~~~~--~~L~~~L~~ 201 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSN----PDVLLLDEPTNHLDIETI--EWLEGFLKT 201 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCCccCHHHH--HHHHHHHHh
Confidence 48999999999999998876 55555 599998866 788877765
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=73.97 Aligned_cols=161 Identities=18% Similarity=0.154 Sum_probs=97.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh-CCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
+...+|.++|--|+||+|++-.+- |... ...| |....+..+.+ .+-.+.++|.-|-.. ++-
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkP-----tigfnve~v~y-KNLk~~vwdLggqtS-----------irP 77 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKP-----TIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRP 77 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCC-----CCCcCcccccc-ccccceeeEccCccc-----------ccH
Confidence 356899999999999999765543 3322 1112 22223333333 556778999988444 333
Q ss_pred HHhcccCCccEEEEEEecC--CCCCHHHHHHHHHHHHh-hcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~-~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
+...+|.+.++++||+|.+ ++++..-..+..++.+- +... .++++.||.|.... ....+.+.. ++
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a---~llv~anKqD~~~~--~t~~E~~~~-----L~-- 145 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA---KLLVFANKQDYSGA--LTRSEVLKM-----LG-- 145 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc---eEEEEeccccchhh--hhHHHHHHH-----hC--
Confidence 4455667999999999987 44554444444444331 1111 56777899998866 444443333 11
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++.+ ..+..||.++.++++.++++.+.+..
T Consensus 146 l~~Lk~r~~---~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 146 LQKLKDRIW---QIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHhhhee---EEEeeccccccCCcHHHHHHHHHHhc
Confidence 112223332 23456888899999999999887654
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-08 Score=86.68 Aligned_cols=142 Identities=20% Similarity=0.297 Sum_probs=88.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhh---CCC------------------cccc--------cCCCCCcceeeEeEEEEe
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSIL---GRK------------------AFKA--------SAGSSGVTKTCEMKTTVL 65 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~---g~~------------------~~~~--------~~~~~~~t~~~~~~~~~~ 65 (352)
........+++|...+|||||+..|+ |.. .|.. .....++|.......+..
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 33467899999999999999998774 221 0000 011133444444444443
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC-CCC------CHHHHHHHHHHHHhhcccccc
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF------SQEEETAVHRLPNLFGKNVFD 138 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~------~~~~~~~l~~~~~~~~~~~~~ 138 (352)
....++|+|+||..+.. .-+......+|+.++|+|++ ..| .++.+... .+...+|-.
T Consensus 253 -~~~~~tliDaPGhkdFi-----------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi~--- 316 (603)
T KOG0458|consen 253 -KSKIVTLIDAPGHKDFI-----------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGIS--- 316 (603)
T ss_pred -CceeEEEecCCCccccc-----------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCcc---
Confidence 67789999999955531 11222335678999999886 222 22333443 344445643
Q ss_pred eEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-HhcC
Q 018636 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (352)
Q Consensus 139 ~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ 177 (352)
.+||++||+|..+=+...++++... +..++ +.|+
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 8999999999985544777777776 66666 5555
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=79.13 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=94.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC---cccccCCC--CCcceeeEeEEEEee------C--CceEEEEeCCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK---AFKASAGS--SGVTKTCEMKTTVLK------D--GQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~---~~~~~~~~--~~~t~~~~~~~~~~~------~--~~~~~lvDtpG~~~~~~~ 85 (352)
..+|+++|+..+|||||.++|..-. .|+..+.+ .++|.+......... + .-++++||.||..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 4899999999999999999996321 22221211 223333333322221 1 2356999999932
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcc
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGH 163 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~ 163 (352)
.+.+.+.-...-+|..++|+|+...........|-.-.. +.+ +.++|+||+|..... ...+++.-..
T Consensus 82 ------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-~c~----klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 82 ------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-LCK----KLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred ------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-hcc----ceEEEEeccccccchhhhhHHHHHHHH
Confidence 333333333345688999999873333333333332222 333 689999999988551 1233333333
Q ss_pred cCChhHHHHHHhcCCcEEEEcCCCcccccch----HHHHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVIV 209 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~----~~~~~L~~~i~~~~~ 209 (352)
++..++..+-+- -.+.++.|+.++ .++.+|.+.+...+-
T Consensus 151 -----~~KtLe~t~f~g--~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 151 -----VRKTLESTGFDG--NSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred -----HHHHHHhcCcCC--CCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 454554433111 113345677777 888888888776553
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=85.02 Aligned_cols=168 Identities=15% Similarity=0.294 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-ccccc-------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
.+||||.+...|||||+..|+.+. .|... .-..++|.-..-..+.| ++..+.++||||..|..+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG- 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc-
Confidence 689999999999999999987543 11110 01123444333444556 789999999999888653
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
++.+.+. -+|++++++|+.+..-...+..+....+. |- +-|+|+||+|......+++- ..
T Consensus 84 ------EVERvl~----MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Arp~~Vv---d~-- 143 (603)
T COG1217 84 ------EVERVLS----MVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDARPDEVV---DE-- 143 (603)
T ss_pred ------hhhhhhh----hcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCCHHHHH---HH--
Confidence 2333332 46999999999977777777777766653 33 56888899999865222222 22
Q ss_pred ChhHHHHHHhcCCc------EEEE-c---CC-CcccccchHHHHHHHHHHHHHHHhcC
Q 018636 166 PKPLKEILQLCDNR------CVLF-D---NK-TKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 166 ~~~~~~~~~~~~~~------~~~~-~---~~-~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
.-+++...+.. .++| + .. .........++..|++.|.+.++...
T Consensus 144 ---vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 144 ---VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ---HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 22232222210 1111 1 11 11222334568899999998887543
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=85.00 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
...+|+|+|.+|+|||||+|.|++.....++..++ .|...+. +.. +..+.++||||+..+...+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~~--~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPG-VTKGQQW--IKL--SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eecceEE--EEe--CCCEEEEECCCcccCCCCc
Confidence 34789999999999999999999887544444333 2333322 222 3467899999997654333
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=89.38 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----------------CCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~lvDtpG~~~~ 82 (352)
..+.|+|+..+|||-|+..|.|.++... ..|++|......++... .-..+.+|||||.
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh--- 550 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH--- 550 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc---
Confidence 5789999999999999999998776332 33444543332222110 1235679999993
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc----c-----
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----H----- 153 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~----~----- 153 (352)
+.|...-......+|..|+|+|+.+.+.......+.+|+..- . |+||.+||+|.+-. +
T Consensus 551 --------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk---t--pFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 551 --------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK---T--PFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred --------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC---C--CeEEeehhhhhhcccccCCCchHH
Confidence 334444344446789999999998888888777777776542 2 89999999997521 1
Q ss_pred -------hhcHHHHhcccCChhHHHHHHhcC-----CcEE-------EEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 -------EKTLEDFLGHECPKPLKEILQLCD-----NRCV-------LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 -------~~~l~~~l~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.....+|-.+ +..++..+. ...+ .|-..+++||..+.|+.+|+-++..+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R-----~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKER-----LNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHH-----HHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 1122223222 333333221 1111 1123467899999999999988776543
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.9e-08 Score=73.35 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+++++|--|+|||||++.|-......-.|+..+ ......+ .+..++.+|.-| ....+....
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHP-----TSE~l~I-g~m~ftt~DLGG-----------H~qArr~wk 82 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP-----TSEELSI-GGMTFTTFDLGG-----------HLQARRVWK 82 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCC-----ChHHhee-cCceEEEEcccc-----------HHHHHHHHH
Confidence 36899999999999999999964433111132222 1222333 677788999988 334444455
Q ss_pred cccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 99 MAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.++..+|+++|.+|+. +++.+. +..++.+... ..-.+.|++++.||+|....
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence 6667899999999987 333322 2222222211 10123399999999999866
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=88.64 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCC-----Ccce-eeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-----~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
..++|+|.+|+|||||||.|++......+..++ -.|+ ....+ ..+.+ ..|+|||||....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCccccc
Confidence 468999999999999999999876544333222 2233 33222 22222 3699999987643
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=84.66 Aligned_cols=60 Identities=23% Similarity=0.218 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..++|+|.+|+|||||||.|++......+.. .|..|+ ....+.. . ...|+||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCC
Confidence 5899999999999999999998765433221 223333 3333332 2 237999999987553
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=85.22 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..||++=+.++.+.+.+|-. |++++ +||+|+..- .||.+|+.- |+..+
T Consensus 411 ~kFSGGWRMRvSLARALflE----PTLLMLDEPTNHLDLNAV--IWLdNYLQg-----WkKTL 462 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLE----PTLLMLDEPTNHLDLNAV--IWLDNYLQG-----WKKTL 462 (807)
T ss_pred cccCCceeeehhHHHHHhcC----ceeeeecCCcccccccee--eehhhHHhh-----hhhee
Confidence 57788877888888888876 78887 499999877 999999987 76443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-08 Score=76.30 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 58 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEW 58 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEE
Confidence 457999999999999999999999876 55555443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-08 Score=80.41 Aligned_cols=43 Identities=28% Similarity=0.235 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 20 l~~vs~~i~--~G~~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 62 (220)
T cd03293 20 LEDISLSVE--EGEFVALVGPSGCGKSTLLRIIAGLER----PTSGEVL 62 (220)
T ss_pred EeceeEEEe--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 344444443 347899999999999999999999865 4555444
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=81.18 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 15 il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 58 (213)
T cd03259 15 ALDDLSLTVE--PGEFLALLGPSGCGKTTLLRLIAGLER----PDSGEIL 58 (213)
T ss_pred eecceeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEE
Confidence 4445555544 347899999999999999999999865 4555444
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=83.67 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+........ .+ ...-.++.+.+.+......
T Consensus 27 il~~isl~i~--~Ge~~~I~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~-~~-~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 27 VLNQLDLHIP--AGQFVAVVGRSGCGKSTLLRLLAGLET----PSAGELLAGTAPLA-EA-REDTRLMFQDARLLPWKKV 98 (257)
T ss_pred eeeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEHH-Hh-hCceEEEecCccCCCCCcH
Confidence 3444444443 347999999999999999999999876 45554432211000 00 0111123344433321100
Q ss_pred cHHH--------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcch
Q 018636 86 SEFV--------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHE 154 (352)
Q Consensus 86 ~~~~--------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~ 154 (352)
.+.+ ...+..++... +.... .......+|++++.++.++..+.... +++++ ++.+|....
T Consensus 99 ~enl~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LSgGqkqrl~laraL~~~p---~lllLDEPt~~LD~~~~-- 169 (257)
T PRK11247 99 IDNVGLGLKGQWRDAALQALAAV--GLADR--ANEWPAALSGGQKQRVALARALIHRP---GLLLLDEPLGALDALTR-- 169 (257)
T ss_pred HHHHHhcccchHHHHHHHHHHHc--CChhH--hcCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHH--
Confidence 0000 11111111111 11111 11111479999999999999887763 44444 477776544
Q ss_pred hcHHHHh
Q 018636 155 KTLEDFL 161 (352)
Q Consensus 155 ~~l~~~l 161 (352)
..+.+.+
T Consensus 170 ~~l~~~L 176 (257)
T PRK11247 170 IEMQDLI 176 (257)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-09 Score=93.02 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccc---ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..|+|||.+|+|||||+|+|++..... ...+..+.|+.. ...+.. +..+.++||||+.........+..+....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~-~~~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD-LIEIPL--DDGHSLYDTPGIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee-EEEEEe--CCCCEEEECCCCCChhHhhhhcCHHHHhh
Confidence 589999999999999999999854210 112222223322 112222 34467999999986421111111111111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
+. -...+....|+++....+.-+...++..+.. ... .+.+.+++.+..
T Consensus 232 ~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~~--~~~~~~~~~~~~ 279 (360)
T TIGR03597 232 IT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EKT--SFTFYVSNELNI 279 (360)
T ss_pred cC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cce--EEEEEccCCcee
Confidence 11 1235677777777664444445555444332 111 344445555544
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=82.69 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+..+.+ ..++|+|+||+|||||+++|+|-.. +..|.+.
T Consensus 19 vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~ 62 (254)
T COG1121 19 VLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLK----PSSGEIK 62 (254)
T ss_pred eeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCc----CCcceEE
Confidence 556666666543 7999999999999999999999766 5666555
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.3e-08 Score=87.72 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=82.1
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EE---------EEeeCCceEEEE
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KT---------TVLKDGQVVNVI 74 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~---------~~~~~~~~~~lv 74 (352)
.+..+..+..+. +.++++||++|||||||++.|+|... +..|.+++.... .. +.|...+...+-
T Consensus 335 ~~l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 335 PALSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLA----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred cccCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCC----CCCceEEECCccccccCHHHHHhHeeeeCCCCcccc
Confidence 344555566554 48999999999999999999999877 555555443211 10 111112222222
Q ss_pred eC----CCCCCCCCCcHHHHHHHHHHHh-cccCCccEEEEEE-ecCCCCCHHHHHHHHHHHHhhcccccceEEEE---Ee
Q 018636 75 DT----PGLFDLSAGSEFVGKEIVKCLG-MAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FT 145 (352)
Q Consensus 75 Dt----pG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~n 145 (352)
+| ..+.....+++++.+.+...-. ...+.++++-.++ +.+..+|+++..++.+.+.++.+. +++++ +.
T Consensus 409 gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA 485 (559)
T COG4988 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTA 485 (559)
T ss_pred ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCcc
Confidence 22 2223333334433332222211 1112233443333 444689999999999999987763 55555 68
Q ss_pred CCCCCCcchhcHHHHhc
Q 018636 146 GGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (352)
|+|..+. ..+.+.+.
T Consensus 486 ~LD~etE--~~i~~~l~ 500 (559)
T COG4988 486 HLDAETE--QIILQALQ 500 (559)
T ss_pred CCCHhHH--HHHHHHHH
Confidence 8887765 44444433
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-08 Score=84.44 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc-----------ccc--cCCCCCcceeeEeEEEEee--C--CceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA-----------FKA--SAGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~-----------~~~--~~~~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~~ 82 (352)
.+..+|.+-..|||||...|+.... ..+ ..-..++|...+.....+. + ...+.+|||||..|.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 5678888999999999988753221 000 0122445665554444332 2 346789999998775
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
. -++.+.+ ..+.+.++|+|++...........-++... +. -++.|+||+|+...+.+...+.
T Consensus 90 s-------YEVSRSL----AACEGalLvVDAsQGveAQTlAN~YlAle~---~L--eIiPViNKIDLP~Adpervk~e-- 151 (603)
T COG0481 90 S-------YEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALEN---NL--EIIPVLNKIDLPAADPERVKQE-- 151 (603)
T ss_pred E-------EEehhhH----hhCCCcEEEEECccchHHHHHHHHHHHHHc---Cc--EEEEeeecccCCCCCHHHHHHH--
Confidence 3 1222222 245778999999866655555544444432 22 5888899999987633333322
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
+.+++..-. +.....||+++.++.++++.|.+.++...+
T Consensus 152 ------Ie~~iGid~------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 152 ------IEDIIGIDA------SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred ------HHHHhCCCc------chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 333442211 123356999999999999999998876443
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=78.22 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc---------ccc---c--CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA---------FKA---S--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~---------~~~---~--~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
.+..+|+.||+...|||||..+|++... +.. . .-..++|.......+.. ..+.+..||+||..|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD- 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD- 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH-
Confidence 3458999999999999999999864321 000 0 11133455444444444 678889999999433
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
+.+-+....-..|..|+|+.+++....+.+..+-+.+. .|-. .+++++||+|..++ ..+-+.+.
T Consensus 88 ----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvdd--~ellelVe 151 (394)
T COG0050 88 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVDD--EELLELVE 151 (394)
T ss_pred ----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccCc--HHHHHHHH
Confidence 22222222235688888888886666666666555444 3542 46666899999976 55544444
Q ss_pred ccCChhHHHHHHhcC
Q 018636 163 HECPKPLKEILQLCD 177 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (352)
. .+++++...+
T Consensus 152 m----EvreLLs~y~ 162 (394)
T COG0050 152 M----EVRELLSEYG 162 (394)
T ss_pred H----HHHHHHHHcC
Confidence 3 3677776644
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=78.04 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh------CCCc-----ccccCCCCCcce-----------eeEeEEEEee---------
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL------GRKA-----FKASAGSSGVTK-----------TCEMKTTVLK--------- 66 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~-----~~~~~~~~~~t~-----------~~~~~~~~~~--------- 66 (352)
...+|+|.|++|+|||||++.|. |..+ -++.+.+|+.-. +..+|--...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45899999999999999999985 2221 112222221100 0111110000
Q ss_pred ------------CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhh
Q 018636 67 ------------DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLF 132 (352)
Q Consensus 67 ------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~ 132 (352)
-|..+.||.|.|.+... -++. .-+|.+++|..+. +.+...-.-. .+.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE-------~~I~-------~~aD~~v~v~~Pg~GD~iQ~~KaGi----mEi- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE-------VDIA-------DMADTVVLVLVPGLGDEIQAIKAGI----MEI- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH-------HHHH-------TTSSEEEEEEESSTCCCCCTB-TTH----HHH-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH-------HHHH-------HhcCeEEEEecCCCccHHHHHhhhh----hhh-
Confidence 24567889999877621 1111 3568888888765 2222211112 222
Q ss_pred cccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHH
Q 018636 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 133 ~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..++|+||.|.... +..... +...+.......-.| .++..+||.++.++++|++.|.+...
T Consensus 169 ------aDi~vVNKaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 169 ------ADIFVVNKADRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -------SEEEEE--SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------ccEEEEeCCChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 57899999995433 222222 444554433211001 12345677889999999999888654
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=89.43 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=34.9
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
..+.++.++.... +.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 20 ~~il~~vs~~i~~--Ge~~~iiG~NGsGKSTLlk~i~G~~~----p~~G~i~ 65 (556)
T PRK11819 20 KQILKDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDK----EFEGEAR 65 (556)
T ss_pred CeeeeCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3455666666654 48999999999999999999999876 5555543
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-08 Score=84.01 Aligned_cols=62 Identities=34% Similarity=0.408 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccC-----CCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+...+|+|.+|+|||||+|+|.+......+. ..|..|+ ....+. + + ..-.|+|||||.....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~--l-~-~gG~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFP--L-P-GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEE--c-C-CCCEEEeCCCCCccCc
Confidence 3588999999999999999999865433221 2333443 233332 2 1 2335899999987543
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.8e-07 Score=76.92 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeC----------------CceEEEEeCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~----------------~~~~~lvDtpG~ 79 (352)
...++|+|||.+++|||||+|+|+..... +...+ +|.+.....+..++ .-.++++|..|+
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~---~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG---AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC---ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 35689999999999999999999976542 22222 33332222222111 124689999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEec
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV 113 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 113 (352)
.........++..+.+.+. .+|+++-|+++
T Consensus 95 vkGAs~G~GLGN~FLs~iR----~vDaifhVVr~ 124 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIR----HVDAIFHVVRA 124 (391)
T ss_pred ccCcccCcCchHHHHHhhh----hccceeEEEEe
Confidence 7765555555665555443 56777776654
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=75.89 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=59.3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHH-HHHHhhcccccceEEEEEeC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ilv~nk 146 (352)
|..+.||.|-|.+.+.. .+. .-+|.+++|.-+. . +.+...++ -+.++ -.++|+||
T Consensus 143 G~DvIIVETVGvGQsev-------~I~-------~~aDt~~~v~~pg--~-GD~~Q~iK~GimEi-------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEV-------DIA-------NMADTFLVVMIPG--A-GDDLQGIKAGIMEI-------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchh-------HHh-------hhcceEEEEecCC--C-CcHHHHHHhhhhhh-------hheeeEec
Confidence 44577888888776421 111 2457777776543 1 12222222 23332 46899999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcC--CcEEEEc-CCCcccccchHHHHHHHHHHHHHHHh
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFD-NKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.|.... +.-... +...+.... .+...|. +...++|..++++++|++.|.+....
T Consensus 199 aD~~~A--~~a~r~--------l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGA--EKAARE--------LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhH--HHHHHH--------HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 995544 111111 222222211 1112222 34567888899999999999988754
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=87.26 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCC---CCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFD---LSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~---~~~~~~~~~~~~~ 94 (352)
-||+|||+||+|||||+..|+|... |..|............+. .+..++--.||--+- ..... ...+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~----P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpy----q~AR 685 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD----PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPY----QEAR 685 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC----CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCCh----HHHH
Confidence 5999999999999999999999987 555543333222222111 122333333431100 00011 1122
Q ss_pred HHHhccc--CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE----eCCCCCCcchhcHHHHhcc
Q 018636 95 KCLGMAK--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF----TGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 95 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~----nk~D~~~~~~~~l~~~l~~ 163 (352)
.++-... ..+|.|-+ . .+|++.+.++.++...++. |.++|+ |.+|+.+- ..|.+.++.
T Consensus 686 K~LG~fGL~sHAHTiki----k-dLSGGQKaRValaeLal~~----PDvlILDEPTNNLDIESI--DALaEAIne 749 (807)
T KOG0066|consen 686 KQLGTFGLASHAHTIKI----K-DLSGGQKARVALAELALGG----PDVLILDEPTNNLDIESI--DALAEAINE 749 (807)
T ss_pred HHhhhhhhhhccceEee----e-ecCCcchHHHHHHHHhcCC----CCEEEecCCCCCcchhhH--HHHHHHHHh
Confidence 2221111 23344433 2 6778899999988887776 666664 77887655 455555544
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=77.96 Aligned_cols=58 Identities=28% Similarity=0.404 Sum_probs=39.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~ 80 (352)
...+|+++|.+|+|||||+|.|++.......... +.|...... .. ...+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~-~~T~~~~~~--~~--~~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKP-GVTKGIQWI--KI--SPGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCC-CEEeeeEEE--Ee--cCCEEEEECCCCC
Confidence 3479999999999999999999987653322222 233333332 22 2567899999973
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=87.09 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=76.1
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCC
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFD 81 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~ 81 (352)
..+.++.++.... +..++|+|+||||||||+++|+|... ++.|.+........-.. ....-.++.+.|.++.
T Consensus 18 ~~~l~~vs~~i~~--Gei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 18 KTALDGVSFEVEP--GEIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred CEEEeceeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 3455565666554 37899999999999999999999987 66665554332111100 0122346777777655
Q ss_pred CCCCcHHHHHHHHHHHhcc-----------c--CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----E
Q 018636 82 LSAGSEFVGKEIVKCLGMA-----------K--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~ 144 (352)
.-. -.+....+....... . -+..... -..+ ..+|.+.+.++.++..+++. |-+++ +
T Consensus 92 ~lT-~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~-~~lS~G~kqrl~ia~aL~~~----P~lliLDEPt 164 (293)
T COG1131 92 ELT-VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKV-RTLSGGMKQRLSIALALLHD----PELLILDEPT 164 (293)
T ss_pred ccc-HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-Ccch-hhcCHHHHHHHHHHHHHhcC----CCEEEECCCC
Confidence 322 111111111111000 0 0111100 0012 47999999999999999887 55555 4
Q ss_pred eCCCCCCc
Q 018636 145 TGGDDLED 152 (352)
Q Consensus 145 nk~D~~~~ 152 (352)
|-+|-...
T Consensus 165 ~GLDp~~~ 172 (293)
T COG1131 165 SGLDPESR 172 (293)
T ss_pred cCCCHHHH
Confidence 66665433
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.7e-08 Score=81.10 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 16 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 58 (235)
T cd03261 16 LKGVDLDVR--RGEILAIIGPSGSGKSTLLRLIVGLLR----PDSGEVL 58 (235)
T ss_pred EeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 334444443 447999999999999999999999865 4455443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=81.87 Aligned_cols=132 Identities=12% Similarity=0.094 Sum_probs=67.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHH--------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV-------- 89 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~-------- 89 (352)
.+.+++|+|+||+|||||+++|+|... +..|.++................++...+++.......+.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH----VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG 111 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC
Confidence 457999999999999999999999876 55555443321110000001112333445443311100100
Q ss_pred ---HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhc
Q 018636 90 ---GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~ 162 (352)
...+...+.. -+.... .-..+ ..+|++++.++.++..+.... +++++ ++.+|.... ..+.+++.
T Consensus 112 ~~~~~~~~~~l~~--~~l~~~-~~~~~-~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~--~~l~~~l~ 181 (214)
T PRK13543 112 RRAKQMPGSALAI--VGLAGY-EDTLV-RQLSAGQKKRLALARLWLSPA---PLWLLDEPYANLDLEGI--TLVNRMIS 181 (214)
T ss_pred CcHHHHHHHHHHH--cCChhh-ccCCh-hhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHHHH--HHHHHHHH
Confidence 0011111110 011111 00111 479999999999999887763 34444 477776544 44444443
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.3e-08 Score=84.24 Aligned_cols=60 Identities=30% Similarity=0.326 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCccee-eEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
+..++|+|++|+|||||+|+|+|......+.. .|..|+. ...+ .. + ....++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~-~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL-P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec-C-CCcEEEECCCcCcc
Confidence 36899999999999999999998865333222 1222332 2222 22 2 23479999999864
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.6e-08 Score=81.60 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 59 (255)
T PRK11248 16 ALEDINLTLE--SGELLVVLGPSGCGKTTLLNLIAGFVP----YQHGSIT 59 (255)
T ss_pred eEeeeeEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 3444444444 347999999999999999999999876 4555443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=76.83 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=82.5
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-----EeeCCceEEEEeCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~lvDtpG~~~ 81 (352)
.++.++... .+..++|+|++|||||||.++|+|-.. ++.|.++.......- .....-++.+=|-.+-..
T Consensus 23 l~~VS~~i~--~Ge~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 23 LNNVSLEIE--RGETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hcceeEEec--CCCEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 334444443 458999999999999999999999887 666665554321110 000122222333333222
Q ss_pred CCCCcHH-------------HHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----E
Q 018636 82 LSAGSEF-------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (352)
Q Consensus 82 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~ 144 (352)
+..+-+. ..+.+...+... +.+.-++---+ +.+|++++.++..++.+..+ |-+++ +
T Consensus 97 P~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~V--gL~~~~l~R~P-~eLSGGQ~QRiaIARAL~~~----PklLIlDEpt 169 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSKSQQRIAELLDQV--GLPPSFLDRRP-HELSGGQRQRIAIARALIPE----PKLLILDEPT 169 (252)
T ss_pred cchhHHHHHhhhhccCCccHHHHHHHHHHHHc--CCCHHHHhcCc-hhcChhHHHHHHHHHHhccC----CCEEEecCch
Confidence 2111111 111122222211 22111111122 37999999999999998776 55555 3
Q ss_pred eCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
+-+|..-. .. .++- +.++-+..+-.|+++++.
T Consensus 170 SaLD~siQ--a~---Ilnl-----L~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 170 SALDVSVQ--AQ---ILNL-----LLELKKERGLTYLFISHD 201 (252)
T ss_pred hhhcHHHH--HH---HHHH-----HHHHHHhcCceEEEEeCc
Confidence 44443311 22 2222 455666666677777766
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=74.41 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999865
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=87.75 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=33.9
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+.++.++... .+.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 19 ~il~~is~~i~--~Ge~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~ 63 (552)
T TIGR03719 19 EILKDISLSFF--PGAKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEAR 63 (552)
T ss_pred eeecCceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 34555555554 347999999999999999999999876 5555544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=81.20 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCC---------cc--eeeEeEEEEe----------------
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSG---------VT--KTCEMKTTVL---------------- 65 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~---------~t--~~~~~~~~~~---------------- 65 (352)
...|+++|.+|+||||++..|+ |..+.-....... .. ....++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999886 4332111111100 00 0111111100
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
..+..+.||||||... .+..+..++...... ..++.+++|+|+... .........+....+ +.-+|+|
T Consensus 180 ~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~-----~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDSVD-----VGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhccC-----CcEEEEE
Confidence 0246788999999655 334455666555432 357889999987622 222333344443323 6788999
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9998755
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=86.74 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++.++... .+.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 16 il~~vsl~i~--~Ge~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~ 59 (530)
T PRK15064 16 LFENISVKFG--GGNRYGLIGANGCGKSTFMKILGGDLE----PSAGNVS 59 (530)
T ss_pred eEeCCEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 4455555554 348999999999999999999999765 4445443
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.1e-08 Score=73.55 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV 54 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~ 54 (352)
.+..++|+|+||+|||||+++|+|... +..|.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i 57 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIV 57 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEE
Confidence 447999999999999999999999876 444543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-08 Score=70.60 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=94.2
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
++|.+++|||.|+-..-.. .|-.+....++..+.....+.. ++ ..+.+|||.| .+.+.+....+|
T Consensus 2 llgds~~gktcllir~kdg-afl~~~fistvgid~rnkli~~-~~~kvklqiwdtag-----------qerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG-AFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAG-----------QERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccC-ceecCceeeeeeeccccceecc-CCcEEEEEEeeccc-----------hHHHhhhhHhhh
Confidence 7899999999886443211 1111111111222222222333 33 3567999999 566777777788
Q ss_pred CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
..+|+++++.|+.++-|-.. +.++..+.+.-...+ .++++.||+|.... . .+.. ..-..+.+..+-.+
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e--r----~v~~---ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE--R----AVKR---DDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh--h----cccc---chHHHHHHHHCCCc
Confidence 99999999999986666444 467777777654444 67788999998643 1 1111 01222333333333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. .+|++++-+++--+-.|.+-+..
T Consensus 138 m------etsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 138 M------ETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred e------eccccccccHhHHHHHHHHHHHH
Confidence 2 56788888888776666555443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-08 Score=90.78 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++-+.++.+.+.+|-+ |.+++ +||+|+... .||+++|..
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~k----P~LLLLDEPtnhLDleA~--~wLee~L~k 266 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQK----PDLLLLDEPTNHLDLEAI--VWLEEYLAK 266 (614)
T ss_pred hccCchHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHH--HHHHHHHHh
Confidence 47889999999999999887 77777 599999988 999999987
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=80.23 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh--CCCcccccCC------------------CCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL--GRKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+.|||-++.+|||||-..|+ |......+.. ..++++...+-.+.+ .+..++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 34789999999999999986653 3322111110 122233333444445 78999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..|.+ ++..+.+. -+|..+.|+|+...+....+.+++.++.. +- |++-.+||+|....
T Consensus 90 GHeDFS-------EDTYRtLt----AvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~i----PI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFS-------EDTYRTLT----AVDSAVMVIDAAKGIEPQTLKLFEVCRLR-DI----PIFTFINKLDREGR 148 (528)
T ss_pred Cccccc-------hhHHHHHH----hhheeeEEEecccCccHHHHHHHHHHhhc-CC----ceEEEeeccccccC
Confidence 988764 22222222 46899999998877877777777765543 33 99999999999877
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-08 Score=80.00 Aligned_cols=36 Identities=19% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 16 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 16 VRGVSFRVR--RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred eeceeEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444443 347999999999999999999999865
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=80.80 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=67.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCce-------------EE
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-------------VN 72 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-------------~~ 72 (352)
+.++.++... ++..++|+|++||||||||++|+|-.. ++.|.+........-.-+..+. ++
T Consensus 18 ~l~~i~l~i~--~Gef~vllGPSGcGKSTlLr~IAGLe~----~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmt 91 (338)
T COG3839 18 VLKDVNLDIE--DGEFVVLLGPSGCGKSTLLRMIAGLEE----PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMT 91 (338)
T ss_pred eeecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCc
Confidence 3444444443 347899999999999999999999887 6666544332221111111122 22
Q ss_pred EEeCCCCCCC--CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 73 VIDTPGLFDL--SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 73 lvDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
+.|-.+|.-- .....++.+.+...... -+++.++--. + ..+|++++.++.+.+.+..+ |-++++
T Consensus 92 V~~Niaf~Lk~~~~~k~ei~~rV~eva~~--L~l~~lL~r~-P-~~LSGGQrQRVAlaRAlVr~----P~v~L~ 157 (338)
T COG3839 92 VYENIAFGLKLRGVPKAEIDKRVKEVAKL--LGLEHLLNRK-P-LQLSGGQRQRVALARALVRK----PKVFLL 157 (338)
T ss_pred HHHHhhhhhhhCCCchHHHHHHHHHHHHH--cCChhHHhcC-c-ccCChhhHHHHHHHHHHhcC----CCEEEe
Confidence 2233333211 11223333333333221 1222222211 2 37899999999999888776 566653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=74.31 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceE-EEEeCCCCCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV-NVIDTPGLFDLSAG 85 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~lvDtpG~~~~~~~ 85 (352)
.++..+... ++..++|+|+||+|||||+++|+|... +..|.+..... ..+ ++...+.+..
T Consensus 17 l~~i~l~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~~~---------~~i~~~~q~~~~~~---- 77 (166)
T cd03223 17 LKDLSFEIK--PGDRLLITGPSGTGKSSLFRALAGLWP----WGSGRIGMPEG---------EDLLFLPQRPYLPL---- 77 (166)
T ss_pred eecCeEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCC---------ceEEEECCCCcccc----
Confidence 344444443 347999999999999999999999876 55554433210 111 1222232221
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHh
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l 161 (352)
..+.+.+. .. .. ..+|++++.++.++..++... +++++ ++.+|.... ..+.+.+
T Consensus 78 -~tv~~nl~----~~-----------~~-~~LS~G~~~rv~laral~~~p---~~lllDEPt~~LD~~~~--~~l~~~l 134 (166)
T cd03223 78 -GTLREQLI----YP-----------WD-DVLSGGEQQRLAFARLLLHKP---KFVFLDEATSALDEESE--DRLYQLL 134 (166)
T ss_pred -ccHHHHhh----cc-----------CC-CCCCHHHHHHHHHHHHHHcCC---CEEEEECCccccCHHHH--HHHHHHH
Confidence 01122221 00 12 378999999999988887763 44444 477776544 4444443
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=79.19 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 26 l~~~s~~i~--~Ge~~~i~G~nGsGKSTLl~~i~Gl~~----p~~G~i~ 68 (228)
T PRK10584 26 LTGVELVVK--RGETIALIGESGSGKSTLLAILAGLDD----GSSGEVS 68 (228)
T ss_pred EeccEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCeeEE
Confidence 344444443 458999999999999999999999865 4455443
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-08 Score=82.85 Aligned_cols=59 Identities=31% Similarity=0.356 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCcc-eeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVT-KTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t-~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
..++++|++|+|||||+|+|+|......+.. .|..| +.... +.. . ....++||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCcc
Confidence 6899999999999999999999865433322 12222 22222 222 1 12369999999653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=78.74 Aligned_cols=37 Identities=32% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... ++..++|+|+||+|||||+++|+|...
T Consensus 15 ~l~~is~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 15 ALDDLNLDIA--DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eeeceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444443 447899999999999999999999865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=72.18 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=69.6
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
..+.||||||... +.......+.++|++++|+|++++-+-.. ..++..+....+.. .|++||.||+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECc
Confidence 4678999999432 22333345579999999999984333222 23444444433333 3889999999
Q ss_pred CCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+........++. ..+....+..+ .++||+++.++.++++.+.+.++.
T Consensus 96 DL~~~~~v~~~e~---------~~~~~~~~~~~------~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEEG---------MQKAQEYNTMF------HETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHHH---------HHHHHHcCCEE------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 9864310112211 12222223322 257889999999999999887754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.4e-08 Score=81.20 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 16 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 16 ALKDVSLSIN--PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3444455544 347999999999999999999999865
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-08 Score=81.98 Aligned_cols=133 Identities=22% Similarity=0.225 Sum_probs=54.0
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCH-HHHHH--HHHHHHhhcccccceEEEEEeC
Q 018636 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-EEETA--VHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 70 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~--l~~~~~~~~~~~~~~~ilv~nk 146 (352)
.+.++||||..+.-. .+.....+...+.. ...-++++++|.. .++. ..... +-.+..++.-+. |.+.|+||
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~l--P~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLEL--PHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTS--EEEEEE--
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCC--CEEEeeec
Confidence 578999999544211 11122333333332 3455788888887 4332 22111 111111111122 99999999
Q ss_pred CCCCCcchh----------cHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 147 GDDLEDHEK----------TLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 147 ~D~~~~~~~----------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+|+.+.... .+...+..........+......-. ......+.|+.++.++.+|+..|++.+.
T Consensus 166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFG-LVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCS-SS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 999873101 1111111000011112222221111 1112235677778899999999888753
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=75.67 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.9e-08 Score=80.33 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 61 (216)
T TIGR00960 19 LDNLNFHIT--KGEMVFLVGHSGAGKSTFLKLILGIEK----PTRGKIR 61 (216)
T ss_pred EEeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 344444443 447999999999999999999999865 4455443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-08 Score=79.71 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=32.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++.++... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 17 il~~is~~i~--~G~~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~ 60 (214)
T TIGR02673 17 ALHDVSLHIR--KGEFLFLTGPSGAGKTTLLKLLYGALT----PSRGQVR 60 (214)
T ss_pred eecceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3444455544 347999999999999999999999865 4455443
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9e-08 Score=85.39 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=32.4
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 18 vl~~vsl~i~--~Ge~~~l~G~nGsGKSTLL~~iaGl~~----p~~G~I~ 61 (369)
T PRK11000 18 ISKDINLDIH--EGEFVVFVGPSGCGKSTLLRMIAGLED----ITSGDLF 61 (369)
T ss_pred EEeeeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEE
Confidence 3344444444 347999999999999999999999876 5555443
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=76.55 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCC--cccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+..+..+... ++..++|+|+||+|||||+++|+|.. . +..|.+...............-.++.+.+.+....
T Consensus 24 ~l~~~~~~i~--~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (194)
T cd03213 24 LLKNVSGKAK--PGELTAIMGPSGAGKSTLLNALAGRRTGL----GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL 97 (194)
T ss_pred ceecceEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCceEEEECCEeCchHhhhheEEEccCcccCCCCC
Confidence 4444445444 45899999999999999999999986 5 45554433221110000011112233444443311
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~ 152 (352)
.+.+.+..... . . .+|.+++.++.++..++... +++++ ++.+|....
T Consensus 98 ----t~~~~i~~~~~-----~---------~-~LS~G~~qrv~laral~~~p---~illlDEP~~~LD~~~~ 147 (194)
T cd03213 98 ----TVRETLMFAAK-----L---------R-GLSGGERKRVSIALELVSNP---SLLFLDEPTSGLDSSSA 147 (194)
T ss_pred ----cHHHHHHHHHH-----h---------c-cCCHHHHHHHHHHHHHHcCC---CEEEEeCCCcCCCHHHH
Confidence 11222211100 0 0 67899999999888887652 34444 366665433
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=78.72 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~----p~~G~i~~ 58 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK----PDEGDIEI 58 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCCCeEEE
Confidence 567999999999999999999999876 55555443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=77.53 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 il~~~s~~i~--~G~~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~ 62 (218)
T cd03255 19 ALKGVSLSIE--KGEFVAIVGPSGSGKSTLLNILGGLDR----PTSGEVR 62 (218)
T ss_pred EEeeeEEEEc--CCCEEEEEcCCCCCHHHHHHHHhCCcC----CCceeEE
Confidence 3444444444 347999999999999999999999865 4555443
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.4e-08 Score=84.47 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCce-EEEEeCCCCCCCCCC-
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFDLSAG- 85 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~lvDtpG~~~~~~~- 85 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+..............+. .++.+.+.++....-
T Consensus 23 ~~isl~i~--~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 23 DNLNLTIK--QGTMVTLLGPSGCGKTTVLRLVAGLEK----PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred eeeEEEEc--CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 34344443 347999999999999999999999887 5555544332111000001111 234444444321110
Q ss_pred -------------cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCC
Q 018636 86 -------------SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGD 148 (352)
Q Consensus 86 -------------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D 148 (352)
..+..+.+...+.. -+...+ .......+|++++.++.+.+.+... |-+++ ++.+|
T Consensus 97 eNi~~~l~~~~~~~~~~~~~v~~~l~~--~gl~~~--~~r~~~~LSgGq~QRVaLARaL~~~----P~lLLLDEP~s~LD 168 (351)
T PRK11432 97 ENVGYGLKMLGVPKEERKQRVKEALEL--VDLAGF--EDRYVDQISGGQQQRVALARALILK----PKVLLFDEPLSNLD 168 (351)
T ss_pred HHHHHHHhHcCCCHHHHHHHHHHHHHH--cCCchh--hcCChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCC
Confidence 11111122222211 122211 1111248999999999999998876 55555 46666
Q ss_pred CCCc
Q 018636 149 DLED 152 (352)
Q Consensus 149 ~~~~ 152 (352)
....
T Consensus 169 ~~~r 172 (351)
T PRK11432 169 ANLR 172 (351)
T ss_pred HHHH
Confidence 5433
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=79.64 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 17 il~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 17 ALKNINLNIN--PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eeecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4445455544 347999999999999999999999865
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.5e-08 Score=79.80 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 16 l~~v~~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 58 (205)
T cd03226 16 LDDLSLDLY--AGEIIALTGKNGAGKTTLAKILAGLIK----ESSGSIL 58 (205)
T ss_pred eeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEE
Confidence 344444443 347999999999999999999999866 5555443
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.5e-08 Score=83.62 Aligned_cols=63 Identities=27% Similarity=0.325 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
..+++|||-+|+|||||||+|+|......+..+| .|...+... -+..+.++||||+.......
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG-~Tk~~q~i~----~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG-TTKGIQWIK----LDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc-eecceEEEE----cCCCeEEecCCCcCCCCccc
Confidence 3789999999999999999999998744444442 233322221 24458899999998765333
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=80.10 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 40 l~~is~~i~--~Ge~~~l~G~nGsGKSTLl~~L~Gl~~----p~~G~i~ 82 (269)
T cd03294 40 VNDVSLDVR--EGEIFVIMGLSGSGKSTLLRCINRLIE----PTSGKVL 82 (269)
T ss_pred eeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEE
Confidence 334444443 458999999999999999999999876 4445443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=83.63 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-Eee------CCceEEEEeCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLK------DGQVVNVIDTPG 78 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~------~~~~~~lvDtpG 78 (352)
..++.++... .+..++|+|+||||||||+++|+|... ++.|.+......... ... ...-.++.+.++
T Consensus 8 ~l~~vs~~i~--~Gei~~l~G~sGsGKSTLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 8 GVNDADLAIA--KGEIFVIMGLSGSGKSTTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred eEEeeEEEEc--CCCEEEEECCCCChHHHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3344445544 348999999999999999999999877 555654443221110 000 112234556666
Q ss_pred CCCCCCCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE-
Q 018636 79 LFDLSAGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV- 143 (352)
Q Consensus 79 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv- 143 (352)
++....-.+.+ ...+...+.. -+.+. +.......+|++++.++.++..+.... +++++
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~--vgL~~--~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLlD 154 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKL--VGLEE--YEHRYPDELSGGMQQRVGLARALAAEP---DILLMD 154 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCch--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEe
Confidence 65422111111 1111111111 12211 111222479999999999999987763 44444
Q ss_pred --EeCCCCCCc
Q 018636 144 --FTGGDDLED 152 (352)
Q Consensus 144 --~nk~D~~~~ 152 (352)
++-+|....
T Consensus 155 EP~saLD~~~r 165 (363)
T TIGR01186 155 EAFSALDPLIR 165 (363)
T ss_pred CCcccCCHHHH
Confidence 466665433
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-08 Score=80.62 Aligned_cols=34 Identities=35% Similarity=0.366 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL----PDSGEVL 58 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457899999999999999999999865 4445443
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.6e-08 Score=73.47 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----------EeeCCc----eEEEEeCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------VLKDGQ----VVNVIDTPGLFDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------~~~~~~----~~~lvDtpG~~~~~ 83 (352)
.+.+++|+|++|+|||||+|.|+|-.. |..|.+.....-... .+ +.. ++++-...|++-..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~----P~~G~i~i~g~d~t~~~P~~RPVSmlF-QEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET----PASGEILINGVDHTASPPAERPVSMLF-QENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC----CCCceEEEcCeecCcCCcccCChhhhh-hccccchhhhhhhhhcccCCc
Confidence 347999999999999999999999877 555544332211111 11 111 12222222332211
Q ss_pred --CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 84 --AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.-+..-.+.+...+.. -+...++- ..-..+|++++.++.+.+.+.... |++++
T Consensus 99 ~LkL~a~~r~~v~~aa~~--vGl~~~~~--RLP~~LSGGqRQRvALARclvR~~---PilLL 153 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQ--VGLAGFLK--RLPGELSGGQRQRVALARCLVREQ---PILLL 153 (231)
T ss_pred ccccCHHHHHHHHHHHHH--hChhhHhh--hCccccCchHHHHHHHHHHHhccC---CeEEe
Confidence 1111112223322221 13333322 222478899999988888776543 77775
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=73.66 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..+..+... .+..|+|+|++|||||||+|+|.|-.. |+.|.+..
T Consensus 21 L~~v~l~i~--~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i 64 (226)
T COG1136 21 LKDVNLEIE--AGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLI 64 (226)
T ss_pred cccceEEEc--CCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEE
Confidence 444444444 448999999999999999999998887 55554443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=77.84 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 20 il~~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 64 (233)
T cd03258 20 ALKDVSLSVP--KGEIFGIIGRSGAGKSTLIRCINGLER----PTSGSVLV 64 (233)
T ss_pred eeecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 3444445544 448999999999999999999999876 55555443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=79.00 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|+|||++|+||||||++|..... .......|++|+.. ...+.++++.+|. | ...+.....
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp~--D--------l~~miDvaK 132 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECPS--D--------LHQMIDVAK 132 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeChH--H--------HHHHHhHHH
Confidence 6788999999999999999975422 00112234444321 1356788999983 2 222332222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
-+|.+++++|+.-.+.-+...+|..+... |-+ .++-|+||+|+...+ ..|....++
T Consensus 133 ----IaDLVlLlIdgnfGfEMETmEFLnil~~H-GmP---rvlgV~ThlDlfk~~-stLr~~KKr 188 (1077)
T COG5192 133 ----IADLVLLLIDGNFGFEMETMEFLNILISH-GMP---RVLGVVTHLDLFKNP-STLRSIKKR 188 (1077)
T ss_pred ----hhheeEEEeccccCceehHHHHHHHHhhc-CCC---ceEEEEeecccccCh-HHHHHHHHH
Confidence 35899999998766655666666665553 322 688889999998652 445544443
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-08 Score=78.14 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+.+++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (201)
T cd03231 16 FSGLSFTLA--AGEALQVTGPNGSGKTTLLRILAGLSP----PLAGRVL 58 (201)
T ss_pred eccceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 344444443 458999999999999999999999875 4455443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-08 Score=84.64 Aligned_cols=141 Identities=12% Similarity=0.042 Sum_probs=72.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~ 83 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... ++.|.+............ ...-.++.+.+.++...
T Consensus 8 ~l~~vs~~i~--~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 8 AVDGVNFKVR--EGEVFGFLGPNGAGKTTTIRMLTTLLR----PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred EEeeeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3444445544 347999999999999999999999876 555554432211000000 00112344555544321
Q ss_pred CCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----Ee
Q 018636 84 AGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FT 145 (352)
Q Consensus 84 ~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~n 145 (352)
...+.+ ...+...+... +... +....-..+|++++.++.++..+... |-+++ ++
T Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELF--ELGE--AADRPVGTYSGGMRRRLDIAASLIHQ----PDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChh--HhCCchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCc
Confidence 111111 00111111110 1110 00111147999999999999998886 44544 47
Q ss_pred CCCCCCcchhcHHHHhc
Q 018636 146 GGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (352)
.+|.... ..+.+.+.
T Consensus 154 gLD~~~~--~~l~~~l~ 168 (302)
T TIGR01188 154 GLDPRTR--RAIWDYIR 168 (302)
T ss_pred CCCHHHH--HHHHHHHH
Confidence 7776544 44444443
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=76.82 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 21 l~~isl~i~--~G~~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 63 (221)
T TIGR02211 21 LKGVSLSIG--KGEIVAIVGSSGSGKSTLLHLLGGLDN----PTSGEVL 63 (221)
T ss_pred EeeeEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 344444443 447999999999999999999999876 4455443
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=76.46 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~----~~~G~i~ 56 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET----PQSGRVL 56 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 457999999999999999999999876 4445443
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.8e-08 Score=83.13 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=72.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~ 83 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+........... ....-.++.+.+.+....
T Consensus 19 ~l~~vsl~i~--~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 19 VVNDLSFTIA--RGECFGLLGPNGAGKSTIARMLLGMIS----PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred EEcceeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 3444445544 348999999999999999999999865 45554443221100000 001112334444443211
Q ss_pred CCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeC
Q 018636 84 AGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTG 146 (352)
Q Consensus 84 ~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk 146 (352)
...+.+ ...+...+.. -+... +....-..+|++++.++.++..+.... +++++ ++.
T Consensus 93 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~--~~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~g 165 (303)
T TIGR01288 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEF--ARLES--KADVRVALLSGGMKRRLTLARALINDP---QLLILDEPTTG 165 (303)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--CCChh--HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCcC
Confidence 111111 0011111110 01110 000111479999999999999988763 34444 577
Q ss_pred CCCCCcchhcHHHHhcc
Q 018636 147 GDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~ 163 (352)
+|.... ..+.+.+..
T Consensus 166 LD~~~~--~~l~~~l~~ 180 (303)
T TIGR01288 166 LDPHAR--HLIWERLRS 180 (303)
T ss_pred CCHHHH--HHHHHHHHH
Confidence 776644 555554443
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=73.70 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
...+|+++|.+|+|||||+|.|.+.......+..+ .|..... +. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~-~t~~~~~--~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPG-YTKGEQL--VK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eeeeeEE--EE--cCCCEEEEECcCC
Confidence 34689999999999999999999876544333333 2322221 11 2346889999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=76.85 Aligned_cols=45 Identities=24% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+.++.++... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 6 ~il~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 50 (190)
T TIGR01166 6 EVLKGLNFAAE--RGEVLALLGANGAGKSTLLLHLNGLLR----PQSGAVL 50 (190)
T ss_pred ceecceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceeEE
Confidence 34455555554 347999999999999999999999865 4455444
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=78.51 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 16 il~~vs~~i~--~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 60 (211)
T cd03225 16 ALDDISLTIK--KGEFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLV 60 (211)
T ss_pred eecceEEEEc--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEE
Confidence 3445555544 347999999999999999999999876 55555443
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=64.70 Aligned_cols=119 Identities=21% Similarity=0.169 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-CCCcccccCCCCCccee-eEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKT-CEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-g~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+++|.-++|||++|.-|+ |.... ......|.. .....++... ...+.+.||.|+.+. . .++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~---~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~----~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP---GTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---Q----QEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCC---CCccccchhhheeEeeecCCChhheEEEeecccccCc---h----hhh
Confidence 45799999999999999997665 54441 111122332 2233333322 346789999998763 1 222
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc---cccceEEEEEeCCCCCCc
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---NVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~ilv~nk~D~~~~ 152 (352)
-+.. +.-+|+|++|++.. +.....++++++.-+.+ ....|++++.|+.|....
T Consensus 78 prhy---~q~aDafVLVYs~~---d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 PRHY---FQFADAFVLVYSPM---DPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hHhH---hccCceEEEEecCC---CHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 2222 23579999999765 34455566666655422 122389999999998754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.5e-08 Score=79.23 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 l~~~s~~i~--~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (213)
T cd03262 16 LKGIDLTVK--KGEVVVIIGPSGSGKSTLLRCINLLEE----PDSGTII 58 (213)
T ss_pred ecCceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 334444443 447999999999999999999999865 4455443
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=76.98 Aligned_cols=34 Identities=35% Similarity=0.435 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 43 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ----PTSGGVI 43 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 347999999999999999999999876 4555443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=89.30 Aligned_cols=133 Identities=18% Similarity=0.066 Sum_probs=69.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE---------EEEeeCCceEEEEeCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---------TTVLKDGQVVNVIDTP 77 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---------~~~~~~~~~~~lvDtp 77 (352)
.++..+..+ .+.+|+|+|++|+|||||++.|+|... +..|.+..+.... .+.+-....+.+-+|-
T Consensus 351 L~~isl~i~--~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI 424 (529)
T TIGR02868 351 LDGVSLDLP--PGERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTV 424 (529)
T ss_pred eecceEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccH
Confidence 334444443 458999999999999999999999876 6666554432110 0000011111111221
Q ss_pred ----CCCCCCCCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---Ee
Q 018636 78 ----GLFDLSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FT 145 (352)
Q Consensus 78 ----G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~n 145 (352)
-++....+++++.+.+..+ +.....+.|..+ -+.+..+|++++.++.+++.++.+. +++++ +.
T Consensus 425 ~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i--ge~G~~LSGGQrQRiaiARall~~~---~iliLDE~TS 499 (529)
T TIGR02868 425 RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVL--GEGGARLSGGERQRLALARALLADA---PILLLDEPTE 499 (529)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchh--ccccCcCCHHHHHHHHHHHHHhcCC---CEEEEeCCcc
Confidence 1112222333333222211 111111223222 2333579999999999999998863 55554 45
Q ss_pred CCCCC
Q 018636 146 GGDDL 150 (352)
Q Consensus 146 k~D~~ 150 (352)
.+|..
T Consensus 500 aLD~~ 504 (529)
T TIGR02868 500 HLDAG 504 (529)
T ss_pred cCCHH
Confidence 55543
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=84.44 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=70.5
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeCCceEEEEeCCCCCCCCC--
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSA-- 84 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~lvDtpG~~~~~~-- 84 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+........ .......-.++...+.++....
T Consensus 21 ~~vsl~i~--~Ge~~~llG~sGsGKSTLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 21 KGIDLDVA--DGEFIVLVGPSGCGKSTLLRMVAGLER----ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred eeeeEEEc--CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 34444443 347899999999999999999999876 55554443221110 0000011112334444332111
Q ss_pred ------------CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCC
Q 018636 85 ------------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGD 148 (352)
Q Consensus 85 ------------~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D 148 (352)
...+....+...+... +++.+ ....-..+|++++.++.++..+... |-+++ ++.+|
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~--~~~~~~~LSgGq~QRvalARAL~~~----P~llLLDEP~s~LD 166 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARIL--ELEPL--LDRKPRELSGGQRQRVAMGRAIVRE----PAVFLFDEPLSNLD 166 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHc--CChhH--hhCChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCC
Confidence 0111111122222111 22211 1111147999999999999998776 55555 46666
Q ss_pred CCCcchhcHHHHh
Q 018636 149 DLEDHEKTLEDFL 161 (352)
Q Consensus 149 ~~~~~~~~l~~~l 161 (352)
.... ..+.+.+
T Consensus 167 ~~~r--~~l~~~l 177 (356)
T PRK11650 167 AKLR--VQMRLEI 177 (356)
T ss_pred HHHH--HHHHHHH
Confidence 5433 4444333
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=76.20 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=67.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc------ccCCCCC-----------cceeeEeEEEE----------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSSG-----------VTKTCEMKTTV---------------- 64 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~------~~~~~~~-----------~t~~~~~~~~~---------------- 64 (352)
.+..|+|+|+||+||||++..|++..... ....... ......+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887542200 0000000 00001111100
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---c-cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE
Q 018636 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM---A-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 65 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
...+..+.||||||.... +..+..++...... . ...++..++|++++... ........+...++ ..
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~-----~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVG-----LT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCC-----CC
Confidence 013456889999997653 23333444443321 1 23567889999987322 22222233322222 57
Q ss_pred EEEEeCCCCCCc
Q 018636 141 IVVFTGGDDLED 152 (352)
Q Consensus 141 ilv~nk~D~~~~ 152 (352)
-+|+||+|....
T Consensus 263 giIlTKlD~t~~ 274 (318)
T PRK10416 263 GIILTKLDGTAK 274 (318)
T ss_pred EEEEECCCCCCC
Confidence 789999996644
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-07 Score=77.14 Aligned_cols=36 Identities=25% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 16 l~~vsl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 16 LDDVSFSVR--PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred ecCceEEec--CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344444443 447999999999999999999999765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=76.56 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=77.8
Q ss_pred CCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----------EeeCCceEEEEeCCC
Q 018636 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------VLKDGQVVNVIDTPG 78 (352)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------~~~~~~~~~lvDtpG 78 (352)
+.++.-|.+ .+++++|.||+||||+++.|+|... |++|.+.+......- .+-..+.-..||.|-
T Consensus 42 disf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~----p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 42 DISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLL----PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred eeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccc----cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 334555544 8999999999999999999999987 666655443221110 000122335789984
Q ss_pred CCCCC-------CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE----eCC
Q 018636 79 LFDLS-------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF----TGG 147 (352)
Q Consensus 79 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~----nk~ 147 (352)
..+.. .++....+.+...... -+++.++- .++ ..+|.+++.+.+++..++.+ |-++.+ --+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~ei--Ldl~~~lk-~~v-r~LSlGqRmraeLaaaLLh~----p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEI--LDLEGFLK-WPV-RKLSLGQRMRAELAAALLHP----PKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHH--hcchhhhh-hhh-hhccchHHHHHHHHHHhcCC----CcEEEecCCccCc
Confidence 33211 1122222222211110 12222222 122 48899999999999998887 555553 334
Q ss_pred CCCCcchhcHHHHhcc
Q 018636 148 DDLEDHEKTLEDFLGH 163 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~ 163 (352)
|.... ..+.+|++.
T Consensus 188 DV~aq--~~ir~Flke 201 (325)
T COG4586 188 DVNAQ--ANIREFLKE 201 (325)
T ss_pred chhHH--HHHHHHHHH
Confidence 44433 556666554
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-08 Score=91.29 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeC-CceEEEEeCC------
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKD-GQVVNVIDTP------ 77 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~lvDtp------ 77 (352)
+.++.+..-+. +.+|+|+|++|||||||++.|+|-.. |..|.+..+..-. .+.... .+.+.+|..-
T Consensus 488 vL~~isL~I~~--Ge~vaIvG~SGsGKSTL~KLL~gly~----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g 561 (709)
T COG2274 488 VLEDLSLEIPP--GEKVAIVGRSGSGKSTLLKLLLGLYK----PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561 (709)
T ss_pred hhhceeEEeCC--CCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC
Confidence 44555555554 48999999999999999999999877 6666554432111 000000 1233333222
Q ss_pred ------CCCCCCCCcHHHHHHHHHHHhcccCCccEEE--------E-EEecCCCCCHHHHHHHHHHHHhhcccccceEEE
Q 018636 78 ------GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFL--------V-VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (352)
Q Consensus 78 ------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~il 142 (352)
-+.++..+.++ +..++..+ ++|.++ . |-..+..+|++++.++.+++.+..++ ++++
T Consensus 562 SI~eNi~l~~p~~~~e~----i~~A~~~a--g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILl 632 (709)
T COG2274 562 SIRENIALGNPEATDEE----IIEAAQLA--GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILL 632 (709)
T ss_pred cHHHHHhcCCCCCCHHH----HHHHHHHh--CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEE
Confidence 22333333333 33332222 222222 2 22444689999999999999998873 4444
Q ss_pred E---EeCCCCCCc
Q 018636 143 V---FTGGDDLED 152 (352)
Q Consensus 143 v---~nk~D~~~~ 152 (352)
+ ++.+|..+.
T Consensus 633 LDEaTSaLD~~sE 645 (709)
T COG2274 633 LDEATSALDPETE 645 (709)
T ss_pred EeCcccccCHhHH
Confidence 4 577776544
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=77.99 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 18 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 18 LDDVSLDIP--SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred eeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444443 347999999999999999999999865
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=81.01 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~~ 83 (352)
.+++|||.+++|||||+|+|++....+.... ...|.......+.+++. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999998764122111 11223333333333222 357899999998754
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.....+...+...+ ..+|+++.|+++.
T Consensus 82 s~g~Glgn~fL~~i----r~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANI----REVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHH----HhCCEEEEEEeCC
Confidence 33333444444444 4779999999874
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.7e-08 Score=78.83 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..+..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 17 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~v~~ 60 (204)
T PRK13538 17 FSGLSFTLN--AGELVQIEGPNGAGKTSLLRILAGLAR----PDAGEVLW 60 (204)
T ss_pred EecceEEEC--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 344444544 347999999999999999999999876 55554443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=82.56 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=73.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-Ee-eCCceEEEEeCCCCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-KDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~lvDtpG~~~~~~ 84 (352)
.++..+... .+..++|+|+||+|||||+++|+|... ++.|.+......... .. ....-.++.+.++++....
T Consensus 23 l~~vsl~i~--~Gei~gllGpNGaGKSTLl~~l~Gl~~----p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 23 VDGLSFHVQ--RGECFGLLGPNGAGKTTTLRMLLGLTH----PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred EecceEEEe--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 334444443 347899999999999999999999876 555554432211000 00 0011234556666554211
Q ss_pred CcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeC
Q 018636 85 GSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTG 146 (352)
Q Consensus 85 ~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk 146 (352)
..+.+ ...+...+.. -+.... .-..+ ..+|.+.+.++.++..+... |-+++ ++.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~-~~~~~-~~LS~G~~qrl~la~aL~~~----P~lllLDEPt~g 168 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEF--AKLENK-ADAKV-GELSGGMKRRLTLARALVND----PDVLVLDEPTTG 168 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH--cCCchH-hcCch-hhCCHHHHHHHHHHHHHhCC----CCEEEEeCCCcC
Confidence 11111 0011111110 011000 00011 47999999999999998886 45555 477
Q ss_pred CCCCCcchhcHHHHhc
Q 018636 147 GDDLEDHEKTLEDFLG 162 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~ 162 (352)
+|.... ..+.+.+.
T Consensus 169 LD~~~~--~~l~~~l~ 182 (306)
T PRK13537 169 LDPQAR--HLMWERLR 182 (306)
T ss_pred CCHHHH--HHHHHHHH
Confidence 776544 44544444
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=79.02 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=32.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 20 il~~~sl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 64 (218)
T cd03266 20 AVDGVSFTVK--PGEVTGLLGPNGAGKTTTLRMLAGLLE----PDAGFATV 64 (218)
T ss_pred eecceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCcC----CCCceEEE
Confidence 3444444444 347999999999999999999999865 55555443
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=74.37 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=84.2
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
|...+.++.++..+.. ...+++|+||+||||++++|+|-.. ++.|.+++.......... ++--++-..-|++.
T Consensus 13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~~-~rIGyLPEERGLy~ 85 (300)
T COG4152 13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEIK-NRIGYLPEERGLYP 85 (300)
T ss_pred CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhhh-hhcccChhhhccCc
Confidence 4455566667777654 8899999999999999999999877 666666654432222110 11112222333322
Q ss_pred C--------------CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----
Q 018636 82 L--------------SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---- 143 (352)
Q Consensus 82 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---- 143 (352)
- .....++...+..++. ..++.-+-.+--..+|.+...-+.++..+... |-+++
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLe----r~~i~~~~~~kIk~LSKGnqQKIQfisaviHe----PeLlILDEP 157 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLE----RLEIVGKKTKKIKELSKGNQQKIQFISAVIHE----PELLILDEP 157 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hccccccccchHHHhhhhhhHHHHHHHHHhcC----CCEEEecCC
Confidence 1 1122333444444443 22333333332246777778888888887776 66666
Q ss_pred EeCCCCCCcchhcHHHHhcc
Q 018636 144 FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (352)
++-+|-... +.|.+.+.+
T Consensus 158 FSGLDPVN~--elLk~~I~~ 175 (300)
T COG4152 158 FSGLDPVNV--ELLKDAIFE 175 (300)
T ss_pred ccCCChhhH--HHHHHHHHH
Confidence 477777655 666655544
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.7e-07 Score=76.48 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 l~~isl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 68 (233)
T PRK11629 25 LHNVSFSIG--EGEMMAIVGSSGSGKSTLLHLLGGLDT----PTSGDVIF 68 (233)
T ss_pred EEeeEEEEc--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 344444444 347999999999999999999999865 45554443
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=83.43 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=67.4
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-EeeCCceEEEEeCCCCCCCCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+......... ......-.++.+.+.++....-.
T Consensus 21 ~~vs~~i~--~Ge~~~l~GpsGsGKSTLLr~iaGl~~----p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 21 KDISLSVK--KGEFVCLLGPSGCGKTTLLRIIAGLER----QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 34444443 347999999999999999999999876 555554433221100 00001122344444444321111
Q ss_pred H--------------HHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCC
Q 018636 87 E--------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGD 148 (352)
Q Consensus 87 ~--------------~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D 148 (352)
+ +....+...+... +.+.+ ....-..+|++++.++.+...+... |-+++ ++.+|
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l--~L~~~--~~~~~~~LSgGq~QRvaLARaL~~~----P~llLLDEP~s~LD 166 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLV--GLPGS--ERKYPGQLSGGQQQRVALARALATS----PGLLLLDEPLSALD 166 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCCch--hhCChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCC
Confidence 1 1111121111111 22211 1111147999999999999998876 55555 35555
Q ss_pred CC
Q 018636 149 DL 150 (352)
Q Consensus 149 ~~ 150 (352)
..
T Consensus 167 ~~ 168 (353)
T TIGR03265 167 AR 168 (353)
T ss_pred HH
Confidence 44
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=83.20 Aligned_cols=142 Identities=17% Similarity=0.071 Sum_probs=73.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-Ee-eCCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-KDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~lvDtpG~~~~~ 83 (352)
+.++.++... .+..++|+|+||+|||||+++|+|... ++.|.+......... .. ....-.++.+.+.++...
T Consensus 56 ~l~~is~~i~--~Gei~gLlGpNGaGKSTLl~~L~Gl~~----p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 56 VVNGLSFTVA--SGECFGLLGPNGAGKSTIARMILGMTS----PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred EEeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC----CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 3444445544 348999999999999999999999876 555554432211000 00 001122344555554321
Q ss_pred CCcHHHH--------------HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----Ee
Q 018636 84 AGSEFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FT 145 (352)
Q Consensus 84 ~~~~~~~--------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~n 145 (352)
...+.+. ..+..++.. -+... .....-..+|++.+.++.++..+... |-+++ ++
T Consensus 130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~--~~L~~--~~~~~~~~LS~G~kqrv~lA~aL~~~----P~lLiLDEPt~ 201 (340)
T PRK13536 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEF--ARLES--KADARVSDLSGGMKRRLTLARALIND----PQLLILDEPTT 201 (340)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--cCCch--hhCCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCC
Confidence 1111110 000011100 01100 00001147999999999999998876 44555 47
Q ss_pred CCCCCCcchhcHHHHhcc
Q 018636 146 GGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~ 163 (352)
.+|.... ..+.+.+..
T Consensus 202 gLD~~~r--~~l~~~l~~ 217 (340)
T PRK13536 202 GLDPHAR--HLIWERLRS 217 (340)
T ss_pred CCCHHHH--HHHHHHHHH
Confidence 7775544 444444433
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=77.04 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 13 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 56 (206)
T TIGR03608 13 ILDDLNLTIE--KGKMYAIIGESGSGKSTLLNIIGLLEK----FDSGQVY 56 (206)
T ss_pred EEeceEEEEe--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEE
Confidence 3344444444 347999999999999999999999865 4445443
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=74.05 Aligned_cols=72 Identities=24% Similarity=0.174 Sum_probs=43.5
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.+|||||... .+.....++..++... ..+-+++|++++.. ..+...+..+...++ ..-+|+||+|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4688999999765 2344455555544433 56778888888722 233333344444344 4567789999
Q ss_pred CCCc
Q 018636 149 DLED 152 (352)
Q Consensus 149 ~~~~ 152 (352)
....
T Consensus 152 et~~ 155 (196)
T PF00448_consen 152 ETAR 155 (196)
T ss_dssp SSST
T ss_pred CCCC
Confidence 8755
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-07 Score=74.47 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 56 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE----PASGSIK 56 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEE
Confidence 457999999999999999999999876 4455443
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-07 Score=82.60 Aligned_cols=124 Identities=17% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeE-------------eEEEEe---------------eC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCE-------------MKTTVL---------------KD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~-------------~~~~~~---------------~~ 67 (352)
..+.+|+|||+||+||||++..|++...+..+..... ++.+.. ...+.. ..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 3457999999999999999999887532111111100 111100 000000 02
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..+.+|||+|.... +..+..++... .. ....+-.++|++++. ...+.. . +...|.. ....-+|+||+
T Consensus 269 ~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~--~~~~~~--~-~~~~f~~--~~~~~~I~TKl 336 (420)
T PRK14721 269 GKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATS--SGDTLD--E-VISAYQG--HGIHGCIITKV 336 (420)
T ss_pred CCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCC--CHHHHH--H-HHHHhcC--CCCCEEEEEee
Confidence 446789999997652 22334444432 21 123456777787762 122222 1 2222221 11567889999
Q ss_pred CCCCc
Q 018636 148 DDLED 152 (352)
Q Consensus 148 D~~~~ 152 (352)
|....
T Consensus 337 DEt~~ 341 (420)
T PRK14721 337 DEAAS 341 (420)
T ss_pred eCCCC
Confidence 98754
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=78.42 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC----------------------------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------------------------------------- 51 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~---------------------------------------------- 51 (352)
.-.||+|||...+||||.+.+|+....|+-+...
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 3479999999999999999999877666643211
Q ss_pred ------CCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH
Q 018636 52 ------SGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE 121 (352)
Q Consensus 52 ------~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~ 121 (352)
++.|+...+....+ ++-..+++||.||+..+...+ .+....+......+..++++|++|+.-+ ..+. +
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDA-E 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDA-E 464 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccch-h
Confidence 12222222222222 112356899999997643221 2334555555555667999999998755 4433 3
Q ss_pred HHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+..+.-+-..+. +..+..|+|+||.|+...
T Consensus 465 RSnVTDLVsq~D-P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMD-PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcC-CCCCeeEEEEeecchhhh
Confidence 333332222221 122389999999998754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-07 Score=78.16 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 61 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNI 61 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 447999999999999999999999865 45554443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=77.60 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++.++... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 l~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (242)
T cd03295 17 VNNLNLEIA--KGEFLVLIGPSGSGKTTTMKMINRLIE----PTSGEIF 59 (242)
T ss_pred eeeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEE
Confidence 344444443 347899999999999999999999865 4455443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-07 Score=72.66 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP----PASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 347899999999999999999999876 55555443
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-08 Score=82.44 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 139 ~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..++|+||+|+.......++.++.. ++.+. . +-.+.+.|+.++.++++|++++..
T Consensus 232 ADIVVLNKiDLl~~~~~dle~~~~~-----lr~ln---p-----~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 232 ASLMLLNKVDLLPYLNFDVEKCIAC-----AREVN---P-----EIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CcEEEEEhHHcCcccHHHHHHHHHH-----HHhhC---C-----CCcEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999985311345544443 33222 1 122346688889999999998865
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=73.12 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 ~~~~~~i~--~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~ 60 (173)
T cd03246 19 RNVSFSIE--PGESLAIIGPSGSGKSTLARLILGLLR----PTSGRVR 60 (173)
T ss_pred eeeEEEEC--CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEE
Confidence 33344443 347999999999999999999999865 4445433
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=77.26 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 ~l~~~sl~i~--~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (214)
T cd03292 16 ALDGINISIS--AGEFVFLVGPSGAGKSTLLKLIYKEEL----PTSGTIR 59 (214)
T ss_pred eeeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEE
Confidence 3344444443 347999999999999999999999865 4455443
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=77.51 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=31.5
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 18 l~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 60 (222)
T PRK10908 18 LQGVTFHMR--PGEMAFLTGHSGAGKSTLLKLICGIER----PSAGKIW 60 (222)
T ss_pred EeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 334344443 458999999999999999999999875 4555443
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=77.18 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 58 (232)
T cd03218 16 VNGVSLSVK--QGEIVGLLGPNGAGKTTTFYMIVGLVK----PDSGKIL 58 (232)
T ss_pred eccceeEec--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 344444443 347999999999999999999999876 4555443
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=78.59 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=28.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 18 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 18 VLHGIDLEVK--PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eeccceEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344444443 447899999999999999999999865
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=80.64 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=28.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 23 l~~vsl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 23 LRDASFTVP--GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EEeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444443 458999999999999999999999865
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-08 Score=79.27 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+.... + .++|+|+||+|||||+++|+|...
T Consensus 16 l~~vs~~i~~--g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 16 LDGVSLTLGP--G-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EcceeEEEcC--C-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444455443 4 899999999999999999999765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=75.65 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 15 il~~i~~~i~--~Ge~~~i~G~nGsGKSTLl~~l~g~~~----~~~G~i~~ 59 (232)
T cd03300 15 ALDGVSLDIK--EGEFFTLLGPSGCGKTTLLRLIAGFET----PTSGEILL 59 (232)
T ss_pred eeccceEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 3344444433 458999999999999999999999876 45554443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-07 Score=80.42 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~----p~~G~I~ 56 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR----PQKGRIV 56 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 347999999999999999999999876 4555444
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-07 Score=77.91 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 27 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 69 (265)
T PRK10575 27 LHPLSLTFP--AGKVTGLIGHNGSGKSTLLKMLGRHQP----PSEGEIL 69 (265)
T ss_pred EeeeeeEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEE
Confidence 334344443 447999999999999999999999865 4445443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-07 Score=74.58 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 55 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK----PDGGTIV 55 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 6899999999999999999999875 4445443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=82.68 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 30 l~~vsl~i~--~Ge~~~LlGpsGsGKSTLLr~IaGl~~----p~~G~I~ 72 (375)
T PRK09452 30 ISNLDLTIN--NGEFLTLLGPSGCGKTTVLRLIAGFET----PDSGRIM 72 (375)
T ss_pred EeeeEEEEe--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEE
Confidence 334444443 347999999999999999999999876 5555443
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-07 Score=77.09 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~----p~~G~I~~ 83 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLS----PTVGKVDR 83 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEE
Confidence 457999999999999999999999876 55555443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.8e-07 Score=75.74 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-07 Score=77.91 Aligned_cols=45 Identities=29% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 36 ~il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 80 (224)
T cd03220 36 WALKDVSFEVP--RGERIGLIGRNGAGKSTLLRLLAGIYP----PDSGTVT 80 (224)
T ss_pred EEEeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 34444445544 347999999999999999999999765 5555443
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-07 Score=88.22 Aligned_cols=43 Identities=19% Similarity=0.036 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++++.++.++..++.. |-+++ +|++|.... .++.+++..
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~----p~lLlLDEPt~~LD~~~~--~~l~~~L~~ 389 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIE----PDLLLLDEPTNHLDLHAV--LWLETYLLK 389 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHH--HHHHHHHHH
Confidence 47999999999999998876 55555 599998765 666666654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=84.59 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 L~~vs~~i~--~Geiv~liGpNGaGKSTLLk~LaGll~----p~sG~I~ 61 (402)
T PRK09536 19 LDGVDLSVR--EGSLVGLVGPNGAGKTTLLRAINGTLT----PTAGTVL 61 (402)
T ss_pred EEeeEEEEC--CCCEEEEECCCCchHHHHHHHHhcCCC----CCCcEEE
Confidence 344444443 447999999999999999999999866 5555444
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-07 Score=79.80 Aligned_cols=44 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++.++... .+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 21 l~~vsl~i~--~Gei~~iiG~nGsGKSTLlk~L~Gl~~----p~~G~I~~ 64 (343)
T PRK11153 21 LNNVSLHIP--AGEIFGVIGASGAGKSTLIRCINLLER----PTSGRVLV 64 (343)
T ss_pred EEeeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEE
Confidence 344444444 447999999999999999999999876 55555443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=82.22 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCcHHH------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFV------ 89 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~------ 89 (352)
.+..++|+|+||+|||||+++|+|... ++.|.+........... ....-.++.+.|.++......+.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~----~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLP----PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 457999999999999999999999866 55555443321110000 001122344555544321111110
Q ss_pred --------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcH
Q 018636 90 --------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTL 157 (352)
Q Consensus 90 --------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l 157 (352)
...+...+... +.... .......+|.+++.++.++..+.+. |-+++ ++.+|.... ..+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LS~G~~qrv~la~al~~~----p~lliLDEPt~gLD~~~~--~~l 172 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELV--GLRPE--QHKKIGQLSKGYRQRVGLAQALIHD----PKVLILDEPTTGLDPNQL--VEI 172 (301)
T ss_pred cCCCHHHHHHHHHHHHHHC--CCchH--hcCchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHH--HHH
Confidence 01111111110 11111 1111147899999999999998887 45555 477776544 444
Q ss_pred HHHhc
Q 018636 158 EDFLG 162 (352)
Q Consensus 158 ~~~l~ 162 (352)
.+.+.
T Consensus 173 ~~~l~ 177 (301)
T TIGR03522 173 RNVIK 177 (301)
T ss_pred HHHHH
Confidence 44444
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-07 Score=80.01 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc------ccccCCCC---Ccc--------eeeEeEEEE-----------ee--CC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKASAGSS---GVT--------KTCEMKTTV-----------LK--DG 68 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~~~---~~t--------~~~~~~~~~-----------~~--~~ 68 (352)
..+|+|+|++|+||||++..|++... .-...+.. ... ..+.+.... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 36899999999999999999874321 00000000 000 001111000 00 13
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.||||+|... .+.....++...+... .++.+++|++++ .-...-...++.+.. ++ ..-+|+||+|
T Consensus 321 ~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i~~~F~~-~~-----idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHHHHHhcC-CC-----CCEEEEEccc
Confidence 4788999999765 2333345555554432 456778888775 111122333333332 12 5678899999
Q ss_pred CCCc
Q 018636 149 DLED 152 (352)
Q Consensus 149 ~~~~ 152 (352)
....
T Consensus 389 ET~k 392 (436)
T PRK11889 389 ETAS 392 (436)
T ss_pred CCCC
Confidence 8754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=81.65 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 19 ~~isl~i~--~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~i 61 (353)
T PRK10851 19 NDISLDIP--SGQMVALLGPSGSGKTTLLRIIAGLEH----QTSGHIRF 61 (353)
T ss_pred EEeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 34444443 347999999999999999999999876 45554433
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-07 Score=79.79 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~----p~~G~I~ 55 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR----PDEGEIV 55 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 347899999999999999999999876 4445443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=77.68 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 458999999999999999999999876 55555443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-07 Score=76.92 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP----IDEGQIQ 58 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 447999999999999999999999876 4445443
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-07 Score=73.05 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+..++|+|+||+|||||+++|+|... ..+..|.+........... ...-.++.+.+.+.... .+.+.+.-..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~~~G~i~~~g~~~~~~~-~~~i~~~~q~~~~~~~~----tv~~~l~~~~ 104 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKT--AGVITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNL----TVREALRFSA 104 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEEECCEehHHHh-hhceEEecccCccccCC----cHHHHHHHHH
Confidence 347999999999999999999999642 1133443332211100000 11112233444443311 1112221100
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~ 152 (352)
. . . .+|++++.++.++..++... +++++ ++.+|....
T Consensus 105 ~-----~---------~-~LSgGe~qrv~la~al~~~p---~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 105 L-----L---------R-GLSVEQRKRLTIGVELAAKP---SILFLDEPTSGLDSQAA 144 (192)
T ss_pred H-----H---------h-cCCHHHhHHHHHHHHHhcCC---cEEEEeCCCcCCCHHHH
Confidence 0 0 1 68899999999888887763 34444 355654433
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=77.27 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~----p~~G~i~ 62 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA----PDEGVIK 62 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457999999999999999999999865 4455443
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=77.50 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 65 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA----PDHGEIL 65 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 347999999999999999999999875 4455443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-07 Score=81.50 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=71.3
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEe------eCCceEEEEeCCCCC
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVL------KDGQVVNVIDTPGLF 80 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~------~~~~~~~lvDtpG~~ 80 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+........ ... ....-.++...++++
T Consensus 45 ~~isl~i~--~Gei~~LvG~NGsGKSTLLr~I~Gl~~----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 45 KDASLAIE--EGEIFVIMGLSGSGKSTMVRLLNRLIE----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EeEEEEEc--CCCEEEEECCCCchHHHHHHHHHcCCC----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 33344443 347999999999999999999999876 55555443221100 000 001122344555554
Q ss_pred CCCCCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---
Q 018636 81 DLSAGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV--- 143 (352)
Q Consensus 81 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv--- 143 (352)
....-.+.+ ...+..++.. -+.+.. .......+|++++.++.++..+.... +++|+
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~--~gL~~~--~~~~~~~LSgGq~QRv~LArAL~~~P---~iLLLDEP 191 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQ--VGLENY--AHSYPDELSGGMRQRVGLARALAINP---DILLMDEA 191 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--cCCChh--hhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEECC
Confidence 321111111 1111111111 122211 11112479999999999999887763 34444
Q ss_pred EeCCCCCCcchhcHHHHh
Q 018636 144 FTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l 161 (352)
++.+|.... ..+.+.+
T Consensus 192 ts~LD~~~r--~~l~~~L 207 (400)
T PRK10070 192 FSALDPLIR--TEMQDEL 207 (400)
T ss_pred CccCCHHHH--HHHHHHH
Confidence 467765543 4444433
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=69.00 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 447999999999999999999999876
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-07 Score=75.31 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ----PSSGNIY 58 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEE
Confidence 457999999999999999999999866 4555443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-07 Score=78.46 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... ++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 21 l~~is~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~~ 64 (257)
T PRK10619 21 LKGVSLQAN--AGDVISIIGSSGSGKSTFLRCINFLEK----PSEGSIVV 64 (257)
T ss_pred EeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEE
Confidence 344444443 458999999999999999999999875 44554443
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=77.94 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 15 l~~isl~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 57 (213)
T cd03235 15 LEDVSFEVK--PGEFLAIVGPNGAGKSTLLKAILGLLK----PTSGSIR 57 (213)
T ss_pred eecceeEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEE
Confidence 344444443 347999999999999999999999865 4455443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=67.19 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE 59 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~ 59 (352)
.++.+..-. ++..|+++|++|||||||+|.++|-.. |+.|.++....
T Consensus 21 le~vsL~ia--~ge~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r 67 (259)
T COG4525 21 LEDVSLTIA--SGELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGR 67 (259)
T ss_pred hhccceeec--CCCEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCE
Confidence 344444444 347899999999999999999999877 77777665443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=88.85 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+.+++|+|+||+|||||+++|+|... +..|.+.
T Consensus 334 ~l~~is~~i~--~Ge~~~l~G~NGsGKSTLl~~i~G~~~----p~~G~i~ 377 (530)
T PRK15064 334 LFKNLNLLLE--AGERLAIIGENGVGKTTLLRTLVGELE----PDSGTVK 377 (530)
T ss_pred eecCcEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEE
Confidence 3344444443 347999999999999999999999865 5555443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=75.11 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 28 ~l~~vsl~i~--~Ge~~~i~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~ 72 (267)
T PRK15112 28 AVKPLSFTLR--EGQTLAIIGENGSGKSTLAKMLAGMIE----PTSGELLI 72 (267)
T ss_pred eeeeeeEEec--CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCCEEEE
Confidence 4455455554 347999999999999999999999876 55554443
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-07 Score=77.01 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 il~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 60 (220)
T cd03263 17 AVDDLSLNVY--KGEIFGLLGHNGAGKTTTLKMLTGELR----PTSGTAY 60 (220)
T ss_pred eecceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 3444444444 347999999999999999999999866 5555443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-07 Score=90.75 Aligned_cols=123 Identities=18% Similarity=0.243 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC----CcHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA----GSEF 88 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~----~~~~ 88 (352)
.-.+|||++|+||||||+.- |... +.... ....|..|... -....+++||+|.+-... .+..
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHH
Confidence 47899999999999999876 4432 22110 01112222221 234456999999765432 2233
Q ss_pred HHHHHHHHHhccc--CCccEEEEEEecCCCCC--H--------HHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 89 VGKEIVKCLGMAK--DGIHAFLVVFSVTNRFS--Q--------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 89 ~~~~~~~~~~~~~--~~~~~~l~v~~~~~~~~--~--------~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
....+...+.... ..++++|+++++.+-++ . .-+.++..+...+|-.+ |+.||+||+|...
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhc
Confidence 4566666665442 46899999999872222 2 22345666777777666 9999999999773
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=74.55 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=33.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 26 il~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 70 (265)
T TIGR02769 26 VLTNVSLSIE--EGETVGLLGRSGCGKSTLARLLLGLEK----PAQGTVSF 70 (265)
T ss_pred EeeCceeEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 4445555544 458999999999999999999999866 55555443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.3e-07 Score=75.15 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 36 il~~vs~~i~--~Ge~~~i~G~NGsGKSTLl~~i~Gl~~----p~~G~i~ 79 (236)
T cd03267 36 ALKGISFTIE--KGEIVGFIGPNGAGKTTTLKILSGLLQ----PTSGEVR 79 (236)
T ss_pred eeeceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEE
Confidence 3344444443 447999999999999999999999865 4455443
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=74.99 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-07 Score=76.12 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 16 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 59 (230)
T TIGR03410 16 LRGVSLEVP--KGEVTCVLGRNGVGKTTLLKTLMGLLP----VKSGSIRL 59 (230)
T ss_pred ecceeeEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEE
Confidence 344444443 458999999999999999999999876 55555443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=76.81 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 18 l~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 60 (207)
T PRK13539 18 FSGLSFTLA--AGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIK 60 (207)
T ss_pred EeceEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 344444443 458999999999999999999999866 4455444
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=77.22 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccC-CCCCcceee------------------EeEEEE----------eeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTC------------------EMKTTV----------LKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-~~~~~t~~~------------------~~~~~~----------~~~~ 68 (352)
.+..|+|+|+||+||||++..|++......+. ..+-++.+. .+.... ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34799999999999999999987543211000 000011111 011000 0035
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccc---cceEEEEEe
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV---FDYMIVVFT 145 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~ilv~n 145 (352)
..+.+|||+|+... +..+.+.+.. +. ....+.-.++|++++...... ...+..+....+... ....-+|+|
T Consensus 216 ~DlVLIDTaG~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 216 KHMVLIDTIGMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCEEEEcCCCCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEEe
Confidence 57889999997753 2233333332 22 122344567788876322222 223343443322110 013467889
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 290 KlDEt~~ 296 (374)
T PRK14722 290 KLDEASN 296 (374)
T ss_pred ccccCCC
Confidence 9998754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-07 Score=77.48 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~~ 61 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR----PDEGSVLF 61 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEE
Confidence 447899999999999999999999865 44554443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.1e-07 Score=73.90 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=32.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+..+..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 20 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 63 (228)
T cd03257 20 ALDDVSFSIK--KGETLGLVGESGSGKSTLARAILGLLK----PTSGSII 63 (228)
T ss_pred eecCceeEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3444445544 348999999999999999999999865 5555444
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-07 Score=74.92 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-07 Score=77.13 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 63 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK----PTGGTIL 63 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC----CCcceEE
Confidence 457999999999999999999999865 4445433
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-05 Score=74.72 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..++|+|+||+|||||+++|.|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999876
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-07 Score=91.92 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+.+|+|+|+||||||||+++|+|... +..|.+.
T Consensus 525 l~~vsl~i~--~Ge~i~LvG~NGsGKSTLLk~L~Gll~----p~~G~I~ 567 (718)
T PLN03073 525 FKNLNFGID--LDSRIAMVGPNGIGKSTILKLISGELQ----PSSGTVF 567 (718)
T ss_pred EeccEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCCceEE
Confidence 344444443 347999999999999999999999876 5556554
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-07 Score=75.07 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 19 l~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 62 (241)
T PRK14250 19 LKDISVKFE--GGAIYTIVGPSGAGKSTLIKLINRLID----PTEGSILI 62 (241)
T ss_pred eeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 344444443 347999999999999999999999865 55555443
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=75.68 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=28.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 17 l~~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 17 LQQISFHLP--AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EeeeeEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334444443 458999999999999999999999865
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=80.40 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc-------------eE
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-------------VV 71 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~ 71 (352)
...++.++.... +..+.|+|++|||||||+++|+|-.. ++.|.+..........-+..+ ++
T Consensus 19 ~av~~isl~i~~--Gef~~lLGPSGcGKTTlLR~IAGfe~----p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 19 TAVDDISLDIKK--GEFVTLLGPSGCGKTTLLRMIAGFEQ----PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred eEEecceeeecC--CcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 344454555443 47899999999999999999999887 666655443322211111112 22
Q ss_pred EEEeCCCCCCC--C-CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 72 NVIDTPGLFDL--S-AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 72 ~lvDtpG~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
++.|--+|+-. . ....++.+.+..++... +... +-...-..+|++++.++.+++.+..+ |-++++ |
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV--~L~~--~~~R~p~qLSGGQqQRVALARAL~~~----P~vLLL---D 161 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELV--GLEG--FADRKPHQLSGGQQQRVALARALVPE----PKVLLL---D 161 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHc--Cchh--hhhhChhhhChHHHHHHHHHHHhhcC----cchhhh---c
Confidence 23333333221 1 11122333444443322 1111 11111147899999999999987665 555552 2
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
. +...|+..+.......++.+....+...+.+.+.
T Consensus 162 E---PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD 196 (352)
T COG3842 162 E---PLSALDAKLREQMRKELKELQRELGITFVYVTHD 196 (352)
T ss_pred C---cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 1 1122222222222224666777776666665554
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.8e-07 Score=74.07 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 59 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV----AQEGQIS 59 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEE
Confidence 457999999999999999999999876 4455443
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=76.50 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 447999999999999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.8e-07 Score=74.77 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR----PTSGEII 58 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457999999999999999999999865 4555443
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.8e-07 Score=76.79 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 22 ~l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 65 (265)
T PRK10253 22 VAENLTVEIP--DGHFTAIIGPNGCGKSTLLRTLSRLMT----PAHGHVW 65 (265)
T ss_pred EeeecceEEC--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCcEEE
Confidence 3444455544 348999999999999999999999865 4445443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=73.23 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=32.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 22 il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 65 (225)
T PRK10247 22 ILNNISFSLR--AGEFKLITGPSGCGKSTLLKIVASLIS----PTSGTLL 65 (225)
T ss_pred eeeccEEEEc--CCCEEEEECCCCCCHHHHHHHHhcccC----CCCCeEE
Confidence 3444445544 347999999999999999999999765 4455443
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-07 Score=71.97 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+..+ ++..++|+|+||+|||||+++|+|...
T Consensus 17 ~l~~i~~~i~--~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 17 VLKDVSLTIK--PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cccceEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3444445544 347999999999999999999999876
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-07 Score=72.20 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV 54 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~ 54 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+
T Consensus 18 l~~i~~~i~--~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i 59 (178)
T cd03247 18 LKNLSLELK--QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEI 59 (178)
T ss_pred eEEEEEEEc--CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEE
Confidence 344444444 347999999999999999999999876 445543
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=98.47 E-value=5e-07 Score=73.71 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||+|||||+++|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999973
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8e-07 Score=79.36 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|-.. +..|.+.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~ 77 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQ----PTAGQIM 77 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEE
Confidence 347999999999999999999999876 5555443
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-07 Score=82.71 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcc---cccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAF---KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
+.++.|||.+|+|||||||+|++.... ....+..+.|+.... .+.+ +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~-~~~l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI-EIPL--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE-EEEc--CCCcEEEECCCccc
Confidence 358999999999999999999854310 011222222332211 1222 22347999999964
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-07 Score=76.75 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 21 ~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 21 HAVDLNIH--HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred ecceEEEc--CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34444443 347999999999999999999999865
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-07 Score=77.31 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 il~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 59 (271)
T PRK13638 16 VLKGLNLDFS--LSPVTGLVGANGCGKSTLFMNLSGLLR----PQKGAVL 59 (271)
T ss_pred cccceEEEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCccEEE
Confidence 4445455544 347999999999999999999999876 4555443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=84.11 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE----------EEeeCCceEEEEeC----CCCCCC-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVIDT----PGLFDL- 82 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~lvDt----pG~~~~- 82 (352)
++.+|+|+|++|+|||||+++|+|... +..|.+........ +.+.......+-+| -.++..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~----~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE----PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 458999999999999999999999876 55565544321100 00001111111111 111221
Q ss_pred CCCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcch
Q 018636 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHE 154 (352)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~ 154 (352)
..+++++.+.+..+ +.....+.|..+ .+.+..+|++++.++.+++.++.+. +++++ ++.+|....
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGqrQRiaLARall~~~---~illLDEpts~LD~~~~-- 505 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPI--GENGVLLSGGQRQRLAIARALLKDA---PILILDEATSALDNESE-- 505 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCccccee--cCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEeCccccCCHHHH--
Confidence 22333333322221 111112333322 2334579999999999999988764 56655 577776544
Q ss_pred hcHHHHh
Q 018636 155 KTLEDFL 161 (352)
Q Consensus 155 ~~l~~~l 161 (352)
..+.+.+
T Consensus 506 ~~i~~~L 512 (571)
T TIGR02203 506 RLVQAAL 512 (571)
T ss_pred HHHHHHH
Confidence 4444433
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=71.66 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.1
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..+... ++..++|+|+||+|||||+++|+|...
T Consensus 23 l~~~s~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 23 LKDFSGVVK--PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeEEEEEC--CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 344444444 447999999999999999999999854
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-07 Score=75.05 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 il~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~----p~~G~i~ 60 (258)
T PRK13548 17 LLDDVSLTLR--PGEVVAILGPNGAGKSTLLRALSGELS----PDSGEVR 60 (258)
T ss_pred eeeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEE
Confidence 3444444443 347999999999999999999999865 4445443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=84.29 Aligned_cols=142 Identities=18% Similarity=0.083 Sum_probs=72.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEee--CCceE-EEEeCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLK--DGQVV-NVIDTPGLFD 81 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~-~lvDtpG~~~ 81 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+........ .... ....+ ++...+.+..
T Consensus 26 il~~vsl~i~--~Ge~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 26 VLKGIDFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVP----PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred eeeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 3445455544 347899999999999999999999865 44454433211000 0000 00011 2333333222
Q ss_pred CCCC----------cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCC
Q 018636 82 LSAG----------SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGG 147 (352)
Q Consensus 82 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~ 147 (352)
.... .......+..++... +..... -..+ ..+|++++.++.++..+... |-+++ ++.+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~~-~~~~-~~LSgG~~qrv~la~aL~~~----p~lllLDEPt~~L 171 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAAL--GCQLDL-DSSA-GSLEVADRQIVEILRGLMRD----SRILILDEPTASL 171 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHc--CCCccc-cCCh-hhCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCC
Confidence 1000 011111222222211 222111 1112 47999999999999888776 44544 5888
Q ss_pred CCCCcchhcHHHHhcc
Q 018636 148 DDLEDHEKTLEDFLGH 163 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~ 163 (352)
|.... ..+.+.+..
T Consensus 172 D~~~~--~~l~~~l~~ 185 (510)
T PRK15439 172 TPAET--ERLFSRIRE 185 (510)
T ss_pred CHHHH--HHHHHHHHH
Confidence 87655 555555443
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-07 Score=74.56 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-+|+++|.+.+|||||+.-|+|... ....+..|+-..+.......+..+.+.|.||+.+.......-.+++ ..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv----ia 132 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV----IA 132 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE----EE
Confidence 5999999999999999999998754 1233444544445555434788999999999987543332212222 12
Q ss_pred ccCCccEEEEEEecC
Q 018636 100 AKDGIHAFLVVFSVT 114 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~ 114 (352)
..+.++.+++|+|+-
T Consensus 133 vartcnli~~vld~~ 147 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVL 147 (358)
T ss_pred EeecccEEEEEeecc
Confidence 224567778887764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=73.84 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=27.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+..+... .+..++|+|+||+|||||+++|+|..
T Consensus 16 l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 16 LKGVNLTVK--KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EeccceEEc--CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444443 45799999999999999999999973
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.8e-07 Score=85.88 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee----CCceEEEEeCCCCC--
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLF-- 80 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~lvDtpG~~-- 80 (352)
.++..+... ++.+|+|+|++|+|||||++.|+|... +..|.+........ .+. ...-.++-..|.++
T Consensus 351 L~~inl~i~--~G~~v~IvG~sGsGKSTLl~lL~gl~~----p~~G~I~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf~~ 423 (588)
T PRK13657 351 VEDVSFEAK--PGQTVAIVGPTGAGKSTLINLLQRVFD----PQSGRILIDGTDIR-TVTRASLRRNIAVVFQDAGLFNR 423 (588)
T ss_pred ecceeEEEC--CCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCEEhh-hCCHHHHHhheEEEecCcccccc
Confidence 444444443 447999999999999999999999876 55555443221100 000 00001122222222
Q ss_pred ---------CCCCCcHHHHHHHHH-----HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---
Q 018636 81 ---------DLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV--- 143 (352)
Q Consensus 81 ---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv--- 143 (352)
....+++++...+.. ++.....+.|..+ .+-+..+|++++.++.+++.++.+. +++++
T Consensus 424 Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGq~QRialARall~~~---~iliLDEp 498 (588)
T PRK13657 424 SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV--GERGRQLSGGERQRLAIARALLKDP---PILILDEA 498 (588)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence 122223333222211 1111112334332 2333579999999999999988863 45554
Q ss_pred EeCCCCCC
Q 018636 144 FTGGDDLE 151 (352)
Q Consensus 144 ~nk~D~~~ 151 (352)
++.+|...
T Consensus 499 ts~LD~~t 506 (588)
T PRK13657 499 TSALDVET 506 (588)
T ss_pred ccCCCHHH
Confidence 45665443
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-07 Score=79.82 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+... .+..++|+|+||||||||+++|+|-..
T Consensus 22 ~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 22 DDLSLEIE--AGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred eeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444443 347899999999999999999999876
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=76.96 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++.++... .+..++|+|+||||||||+++|.|... ++.|.+..
T Consensus 20 ~L~~vsl~i~--~Gei~gIiG~sGaGKSTLlr~I~gl~~----p~~G~I~i 64 (343)
T TIGR02314 20 ALNNVSLHVP--AGQIYGVIGASGAGKSTLIRCVNLLER----PTSGSVIV 64 (343)
T ss_pred EEeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 3444445444 347899999999999999999999876 55555443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=86.28 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCce----EEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV----VNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.....+.++. +... .++.|...+......... ..
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~----p~~G~I~~~~~i~y~~--Q~~~~~~~~tv~e~l~~~~~~~~~~~---~~ 434 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLK----PDEGEVDPELKISYKP--QYIKPDYDGTVEDLLRSITDDLGSSY---YK 434 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEEeeeEEEec--ccccCCCCCcHHHHHHHHhhhcChHH---HH
Confidence 457999999999999999999999876 5556554432111111 1100 011110000000000000 00
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhcc
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~~ 163 (352)
...+.. -+.... .-..+ ..+|++++.++.++..+.... +++|+ ++++|.... ..+.+.+..
T Consensus 435 ~~~L~~--l~l~~~-~~~~~-~~LSGGe~QRvaiAraL~~~p---~llLLDEPt~~LD~~~~--~~l~~~l~~ 498 (590)
T PRK13409 435 SEIIKP--LQLERL-LDKNV-KDLSGGELQRVAIAACLSRDA---DLYLLDEPSAHLDVEQR--LAVAKAIRR 498 (590)
T ss_pred HHHHHH--CCCHHH-HhCCc-ccCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--HHHHHHHHH
Confidence 111110 011110 11122 479999999999998877652 44444 588887655 555555443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-07 Score=87.67 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++.++... .+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 337 ~l~~isl~i~--~Ge~~~l~G~NGsGKSTLl~~l~G~~~----p~~G~i~ 380 (552)
T TIGR03719 337 LIDDLSFKLP--PGGIVGVIGPNGAGKSTLFRMITGQEQ----PDSGTIK 380 (552)
T ss_pred eeccceEEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCeEEE
Confidence 3344444443 347999999999999999999999866 5555443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.1e-07 Score=82.00 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~----P~sGeI~I 83 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTM----PNKGTVDI 83 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 447999999999999999999999876 55555443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-07 Score=76.41 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 17 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 17 LKNINLDIP--KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred ecceeEEEC--CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344444444 448999999999999999999999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.8e-07 Score=76.81 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 l~~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (240)
T PRK09493 17 LHNIDLNID--QGEVVVIIGPSGSGKSTLLRCINKLEE----ITSGDLI 59 (240)
T ss_pred eeeeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 334444443 447999999999999999999999865 4445443
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=71.65 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 23 il~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 23 VLKNVSLTVN--AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred EEecceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444444 458999999999999999999999865
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=73.41 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 58 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ----PDSGRIR 58 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEE
Confidence 457999999999999999999999865 4455443
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=72.81 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 38 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP----PAKGTVK 38 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 457999999999999999999999865 4445443
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 352 | ||||
| 3lxx_A | 239 | Crystal Structure Of Human Gtpase Imap Family Membe | 6e-32 | ||
| 3v70_A | 247 | Crystal Structure Of Human Gtpase Imap Family Membe | 3e-27 | ||
| 2xtm_A | 234 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 2e-26 | ||
| 3p1j_A | 209 | Crystal Structure Of Human Gtpase Imap Family Membe | 8e-26 | ||
| 2xto_A | 240 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 1e-25 | ||
| 2xtp_A | 260 | Crystal Structure Of Nucleotide-Free Human Gimap2, | 5e-25 | ||
| 3bb4_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 2e-04 | ||
| 3bb3_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 3e-04 |
| >pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239 | Back alignment and structure |
|
| >pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247 | Back alignment and structure |
|
| >pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234 | Back alignment and structure |
|
| >pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209 | Back alignment and structure |
|
| >pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240 | Back alignment and structure |
|
| >pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260 | Back alignment and structure |
|
| >pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262 | Back alignment and structure |
|
| >pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 1e-68
Identities = 66/259 (25%), Positives = 127/259 (49%), Gaps = 13/259 (5%)
Query: 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV 70
K S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC +
Sbjct: 14 KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72
Query: 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130
+ +IDTP +F E + KE+ +C ++ G H L+V + R++ +++ A R+
Sbjct: 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131
Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE 190
+FG++ + IV+FT +DL +L D++ K L +++ C R F+N+ +
Sbjct: 132 IFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189
Query: 191 AKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMG 250
+ +QV++L+ + ++++ G YT+ L + S + +
Sbjct: 190 NQ-DDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVG-------SDERVKEFKQ 241
Query: 251 QMQESYEDRIKRMAEMVES 269
+ + E + + + E+
Sbjct: 242 SLIKYMETQ-RSYTALAEA 259
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 9e-65
Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%)
Query: 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
P N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ + V
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82
Query: 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
+DTPG+FD + KEI++C+ + G HA L+V + R+++EE A ++ +FG
Sbjct: 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141
Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG 193
+ +MI++FT DDL D L D+L E P+ +++++ + +R +NK +
Sbjct: 142 ERARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQ- 197
Query: 194 TEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAE 233
Q QLL L+ V+ +N YT+ + + A E K+ +
Sbjct: 198 EAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQ 237
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-61
Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 22/236 (9%)
Query: 3 ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
E++++ K TV++LG+ G GKS+T NS++G + + S + + +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
T+ G +N+IDTPGL + + + I L + ++ V + ++
Sbjct: 80 TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136
Query: 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182
V + FGK ++ ++V T E + E F LK I R
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQE 196
Query: 183 FDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
F++ G + L+ + V + D
Sbjct: 197 FEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDA 252
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 173 bits (439), Expect = 3e-52
Identities = 41/268 (15%), Positives = 96/268 (35%), Gaps = 32/268 (11%)
Query: 3 ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
++++ T++++G+ G GKS+T NSI+G + S S + +
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82
Query: 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE 121
+ G +N+IDTPGL + ++ I L I L V + R +
Sbjct: 83 SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138
Query: 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181
+ + + FGK +++ IV T ++F + + L ++++ +
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197
Query: 182 LFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYS 241
V+++N G+ ++ L + A +
Sbjct: 198 DAQASDIPV----------------VLIENSGRCNKND--SDEKVLPNGIAWI------- 232
Query: 242 KREISKLMGQMQESYEDRIKRMAEMVES 269
+ + + ++ + + I +++
Sbjct: 233 -PHLVQTITEVALNKSESIFVDKNLIDK 259
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-08
Identities = 31/294 (10%), Positives = 86/294 (29%), Gaps = 81/294 (27%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
+ V++ G G+GK + + A V +V +D
Sbjct: 150 AKNVLIDGVLGSGK-----TWV--------ALD------------VCLSYKVQCKMDF-K 183
Query: 79 LFDLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
+F L+ + + +++ + + + ++ + L L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC-VLFDNKTKDEAK 192
++ ++V ++++ K F + C +L T+ +
Sbjct: 240 SKPYENCLLVL---LNVQN-AKAWNAF----------------NLSCKILL--TTRFK-- 275
Query: 193 GTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQM 252
+ + + D T D+ + L +Y L ++
Sbjct: 276 ---------QVTDFLSAATTTHISLDHHSMTLTP--DEVKSL--LLKYLDCRPQDLPREV 322
Query: 253 QESYEDRIKRMAEMVESGLKETTTRLE--QQLAKEQAARLRAEEVAQL--AEMK 302
+ R+ +AE +++ + + + ++ + + L AE +
Sbjct: 323 LTTNPRRLSIIAES----IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 5e-06
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 14/142 (9%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNV 73
+ V + G TG+GKS+ N++ G + A +GV + E + V
Sbjct: 65 IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124
Query: 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
D PG+ + + + K + + ++ ++ + + + ++
Sbjct: 125 WDLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK 175
Query: 134 KNVFDYMIVVFTGGDDLEDHEK 155
K V T D +E
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.96 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.96 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.85 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.85 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.85 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.82 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.81 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.78 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.78 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.77 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.76 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.76 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.76 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.75 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.75 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.75 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.74 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.74 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.74 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.74 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.73 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.73 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.73 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.72 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.72 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.72 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.72 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.72 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.72 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.72 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.71 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.71 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.71 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.71 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.71 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.71 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.71 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.71 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.71 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.71 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.71 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.71 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.7 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.7 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.7 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.7 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.7 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.7 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.7 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.7 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.7 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.7 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.7 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.7 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.7 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.7 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.7 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.7 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.7 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.69 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.69 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.69 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.69 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.69 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.69 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.69 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.69 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.69 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.69 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.69 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.69 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.69 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.69 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.69 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.69 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.69 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.69 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.68 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.68 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.68 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.68 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.68 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.68 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.68 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.68 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.68 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.68 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.68 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.68 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.68 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.67 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.67 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.67 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.67 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.67 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.67 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.67 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.67 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.67 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.67 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.67 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.67 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.67 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.67 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.66 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.66 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.66 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.66 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.66 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.66 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.66 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.66 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.66 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.65 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.65 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.65 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.65 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.65 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.65 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.64 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.64 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.64 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.64 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.64 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.64 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.63 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.63 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.63 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.63 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.63 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.62 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.62 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.62 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.62 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.62 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.62 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.62 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.62 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.62 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.62 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.61 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.61 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.61 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.6 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.59 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.59 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.59 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.59 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.58 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.58 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.57 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.57 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.57 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.57 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.34 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.56 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.56 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.55 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.55 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.54 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.54 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.52 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.5 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.49 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.49 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.49 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.49 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.48 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.48 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.48 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.48 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.46 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.46 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.46 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.45 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.45 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.45 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.44 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.43 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.43 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.42 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.42 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.41 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.41 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.41 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.41 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.38 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.37 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.37 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.34 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.32 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.31 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.25 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.21 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.19 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.18 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.16 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.15 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.15 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.14 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.13 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.1 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 99.03 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.02 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.97 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.94 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.93 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.89 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.68 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.68 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.67 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 98.66 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.64 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.63 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.62 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 98.62 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.61 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 98.55 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 98.54 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.51 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.51 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 98.51 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 98.5 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 98.49 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 98.49 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.48 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 98.47 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 98.45 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.45 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.45 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 98.43 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 98.43 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 98.43 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 98.42 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 98.4 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 98.38 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.37 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 98.35 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.34 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 98.33 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.3 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 98.26 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 98.25 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.24 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.24 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.23 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.22 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 98.19 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 98.18 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 98.17 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 98.17 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 98.15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 98.13 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 98.12 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 98.12 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 98.12 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.11 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.11 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.1 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 98.1 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 98.09 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 98.08 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 98.07 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 98.07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 98.07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 98.07 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 98.06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 98.06 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.03 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.03 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 98.02 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 98.0 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 98.0 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.99 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.95 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.94 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.93 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.92 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.89 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.88 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.84 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.82 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.82 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.81 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 97.81 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.79 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.78 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.78 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.77 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 97.77 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.76 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 97.74 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.74 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 97.74 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.73 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 97.72 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.71 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.7 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.69 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.67 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 97.66 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.66 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 97.66 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.65 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.61 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 97.58 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.58 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.55 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.53 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.53 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.52 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.51 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.51 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.51 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 97.5 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.47 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.47 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.46 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.46 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 97.45 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.44 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.44 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.44 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.44 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.43 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.41 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.41 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.39 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.37 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.36 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.36 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.32 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.32 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.3 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 97.28 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 97.28 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.28 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.27 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.25 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.24 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.23 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 97.23 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 97.22 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.18 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.18 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.18 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.17 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 97.16 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.16 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.14 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.11 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.11 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.1 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.09 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 97.06 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.04 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.04 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.02 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.01 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.01 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.97 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.95 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.93 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.93 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.92 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.91 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 96.88 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.88 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 96.88 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 96.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.86 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 96.86 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.85 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.82 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.81 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.8 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.78 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.78 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 96.75 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.75 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.73 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.73 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.73 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.71 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.71 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.69 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.67 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.67 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 96.67 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.65 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.65 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.63 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.63 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.62 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.62 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.62 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.61 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.59 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.57 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.56 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.56 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.54 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.54 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.53 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.52 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.51 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.5 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.49 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.48 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.47 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.47 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.44 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.44 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.43 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.42 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.41 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.41 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.4 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 96.39 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.39 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.38 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.38 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.37 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 96.37 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.36 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.36 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.35 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.32 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.31 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.29 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.29 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.28 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.27 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.26 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.24 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.23 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.23 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.2 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.18 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.16 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.11 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.1 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.1 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.1 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.09 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.08 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.07 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.07 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.07 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.06 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.04 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.04 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.04 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.03 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.01 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 95.97 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.94 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.94 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.89 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.88 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.87 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.85 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.81 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.73 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.72 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 95.72 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.71 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.69 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.67 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.63 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.62 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.62 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 95.61 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.59 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.57 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.54 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.53 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.51 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.49 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.47 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.47 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.47 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.46 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.46 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.44 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 95.39 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.37 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.36 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.36 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 95.34 |
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=203.54 Aligned_cols=204 Identities=35% Similarity=0.652 Sum_probs=143.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.....+|+|+|.+|+|||||+|+|+|...+.......++|..+....+.+ ++..+.||||||+.+.......+...+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34568999999999999999999999887544433334566666666666 78899999999999877777777788888
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
.+..+++++|++++|+|++ +++..+..++..+...++.....|+++|+||+|.... ..+++++.. ....+..++..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHH
Confidence 8888888999999999998 7887888888888887776555689999999999876 677777764 34468889999
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGAT 225 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (352)
|+.+|+.|++.. .++....++.+|++.|..++..+++.+|..+++...+
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 181 FGDRYCALNNKA-TGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HSSSEEECCTTC-CHHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred cCCEEEEEECCC-CccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 999999988764 3455678999999999999999888888888766443
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=192.88 Aligned_cols=202 Identities=30% Similarity=0.574 Sum_probs=153.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
+.....+|+|+|.+|+|||||+|.|+|...+.......++|..+....+.+ .+..+.||||||+.+.........+.+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 344568999999999999999999999876554433333455555555555 7889999999999887655555556667
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe-CCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..+..++.++|++++|+|++ +++..+...+..+...++.....|.++|+| |+|+... .+.+++.......+..++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHH
Confidence 77777778999999999998 688888888888888877554457777777 9998743 455555543334566788
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 222 (352)
..++.++..|++ .++||.++.++.+|++.|.+.+..+.+.+|..+.+.
T Consensus 173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~ 220 (260)
T 2xtp_A 173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220 (260)
T ss_dssp HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHH
Confidence 888888766666 788999999999999999999988776778766544
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=153.74 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=115.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~ 93 (352)
....+|+|+|.+|+|||||+|.|+|... ..... ..+.|............+..+.||||||+.+....... ....+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK-TPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTC-CCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecC-CCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4568999999999999999999999862 11212 22234444444443235678999999998775433321 11222
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........+|++++|+|+++.++..+..++.++.. .+. |+++|+||+|+... ..+...+.. +...+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TGK----PIHSLLTKCDKLTR--QESINALRA-----TQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GCC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEeccccCCh--hhHHHHHHH-----HHHHH
Confidence 2222223456899999999997888888888777765 232 89999999999865 554444443 33333
Q ss_pred Hhc-----CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLC-----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+ ..... ..++||+++.++.+|++.|.+.+..
T Consensus 174 ~~~~~~~~~~~~~----~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 174 DAYRDAGYAGKLT----VQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHTCCSCEE----EEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhhhhcccCCCCe----EEEeecCCCcCHHHHHHHHHHhcCc
Confidence 332 11111 1256888899999999999888754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=164.80 Aligned_cols=181 Identities=15% Similarity=0.219 Sum_probs=122.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
++.+...|+|+|.+|+|||||+|.|+|..... .+....|+........... +..+.+|||||+.+... ...+.+.+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHHHH
Confidence 33455899999999999999999999987522 2222333333233332225 88999999999987542 23445666
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHH-HHHHHHhhcccccceEEEEEeCCCCC-CcchhcHHHHhcccCChhHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ilv~nk~D~~-~~~~~~l~~~l~~~~~~~~~~ 171 (352)
......++..+|++++|+|+++..+..+... +..+.. .+ .|+++|+||+|+. .. ..+.+.+..
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~~----~pvilV~NK~Dl~~~~--~~~~~~~~~-------- 147 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-LN----KPVIVVINKIDKIGPA--KNVLPLIDE-------- 147 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-GC----CCEEEEEECGGGSSSG--GGGHHHHHH--------
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-cC----CCEEEEEECccCCCCH--HHHHHHHHH--------
Confidence 6666666778999999999997788777765 565554 22 2899999999997 44 444444333
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCch
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~ 218 (352)
+...++. +....++||.++.++.+|++.+...++.. ..+|..
T Consensus 148 l~~~~~~----~~~i~~vSA~~g~gv~~L~~~l~~~l~~~-~~~~~~ 189 (308)
T 3iev_A 148 IHKKHPE----LTEIVPISALKGANLDELVKTILKYLPEG-EPLFPE 189 (308)
T ss_dssp HHHHCTT----CCCEEECBTTTTBSHHHHHHHHHHHSCBC-CCSSCT
T ss_pred HHHhccC----CCeEEEEeCCCCCCHHHHHHHHHHhCccC-CCCCCc
Confidence 2233321 11223568899999999999999988653 334444
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-20 Score=157.50 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=115.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|...... +....|+......+....+..+.+|||||+.+.. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~iv--s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeee--cCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 36899999999999999999999875222 2222233322222222367889999999998743 244555666666
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhc-HHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.++.++|++++|+|++++++..+...++.+...+.. .|+++|+||+|+... .. +.+.+.. + ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~---~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCC---CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 677899999999999877888877766766654321 299999999999865 33 3333322 1 11
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. ....++||.++.++.+|++.+...++.
T Consensus 146 ~-----~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 E-----AEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp T-----SEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred c-----CcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 1 112367899999999999999887654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-19 Score=141.78 Aligned_cols=169 Identities=16% Similarity=0.256 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK- 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~- 95 (352)
....+|+|+|.+|+|||||+|.|++...........+.|.....+ .. +..+.+|||||+.+....... ...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSE-REAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHH-HHHHHHH
Confidence 456899999999999999999999875211111111122222222 22 347889999998876543321 222222
Q ss_pred --HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 --CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 --~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
........+|++++|+|++++.+..+...+.++.. .+. |+++|+||+|+... ..+...... +...+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~ 163 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YGI----PVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CEEEEEECcccCCh--HHHHHHHHH-----HHHHH
Confidence 22222245699999999987788877766666654 222 89999999999866 555544333 33333
Q ss_pred Hhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
... +..++ .+|+.++.++.+|++.+.+.+
T Consensus 164 ~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 164 NIDPEDELI------LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCceE------EEEccCCCCHHHHHHHHHHHh
Confidence 221 22222 467888999999999987765
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=140.17 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++.......+..+ .|...... . .+..+.+|||||+......... ....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~t~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-KTRSINFY--L--VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE--E--ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC-CccCeEEE--E--ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 455799999999999999999999886422222222 22222221 1 2456789999998765433221 122222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.........++++++|+|++...+..+...+.++... +. |+++|+||+|+... ..+...... +.....
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-NI----PFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-CC----CEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 2223333567999999999877777777777776654 32 89999999999865 555554444 444554
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. .++ ++||.++.++.++++.+.+.+.
T Consensus 164 ~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTII------PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCEE------ECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCceE------EEecCCCCCHHHHHHHHHHHhh
Confidence 4332 333 4688889999999999988764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=143.45 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|+|+|......... .+.|.......+.+ ++..++||||||+.+.........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 458999999999999999999999875222221 22233444444455 7889999999999876554445455555444
Q ss_pred hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
. ..++|++++|++++ .+++..+..++..+...++.....|+++|+||+|+...+...+++++.. ....+..++..
T Consensus 113 ~--~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~ 188 (262)
T 3def_A 113 V--NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA 188 (262)
T ss_dssp T--TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred h--cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence 2 35789999998887 4678888889999999888776679999999999864433566666653 11224444443
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=143.73 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=122.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|+|..........+ .|.......+.. .+..+.||||||+.+...........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS-EGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSC-CCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45899999999999999999999887533322222 233333333444 6788999999999875443344344443332
Q ss_pred hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++|+++||++++ .+++..+..++..+...++...+.|+++|+||+|+.......+++++.. ....+...+...
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 245789999998887 3677888888888888888665569999999999876532366666543 111233333310
Q ss_pred C----------CcEEEEcCCCccc---------ccchHHHHHHHHHHHHHHHhcCCCCCch
Q 018636 177 D----------NRCVLFDNKTKDE---------AKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (352)
Q Consensus 177 ~----------~~~~~~~~~~~~s---------a~~~~~~~~L~~~i~~~~~~~~~~~~~~ 218 (352)
. -.+.+..+..... .........|+..|..++...+...+.+
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d 253 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 253 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence 0 1223332221110 0112246688888888887665555443
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=144.31 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC----CCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcH---
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE--- 87 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~--- 87 (352)
...+|+|+|.+|+|||||+|+|++...+...... ...|+.......... ++ ..++||||||+.+......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3479999999999999999999998775443200 012222222222221 33 3789999999976533221
Q ss_pred HHHH----HHHHHHhc---------ccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 88 FVGK----EIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 88 ~~~~----~~~~~~~~---------~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
.+.. .+..++.. ....+|+++|+++.+ ..+...+...++.+.. + .|+++|+||+|....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~----~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--K----VNIIPLIAKADTLTP- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--T----SCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--c----CCEEEEEeccCCCCH-
Confidence 1221 11222221 123578999998766 4688888777776654 2 299999999999866
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..+... +...+...+..++ ..|+.++.++.++++.+...++
T Consensus 160 -~e~~~~~~~-----i~~~l~~~~i~v~------~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 -EECQQFKKQ-----IMKEIQEHKIKIY------EFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCC------CC-----------CHHHHHTCS
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEE------cCCCCCChhHHHHHHHHhcCCC
Confidence 666665555 5555555554443 3456678899999998887654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-18 Score=146.04 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~-~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|++|+|||||+|.|+|...... +....|+......+...++..+.++||||+. .. ...+...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~--s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISIT--SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEEC--CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc--CCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 36899999999999999999999875221 2222233222222222267789999999976 21 112222333334
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..++..+|++++|+|++. ++.++...++.+.. .+ .|+++++||+|.... ...+.+.+.. +....+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-~~----~P~ilvlNK~D~~~~-~~~~~~~l~~--------l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-GK----APVILAVNKVDNVQE-KADLLPHLQF--------LASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-SS----SCEEEEEESTTTCCC-HHHHHHHHHH--------HHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-cC----CCEEEEEECcccCcc-HHHHHHHHHH--------HHHhcC
Confidence 556678999999999985 98888766655442 12 299999999999862 1333333332 322223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. ...+.||+++.++.+|++.+...++.
T Consensus 148 ~~-----~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 148 FL-----DIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CS-----EEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cC-----ceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 21 12357888899999999999887654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-18 Score=133.10 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+.+|+|+|.+|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+..... .+........
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-CceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHHH
Confidence 3579999999999999999999987532111111 1233333333444 677889999999865321 1111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|++++.+.....++..+....... .|+++|+||+|+... .. ++... .
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~~--~~~~~-------------~ 138 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL--GMSEV-------------N 138 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC--EEEEE-------------T
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--hh--hhhhc-------------c
Confidence 23356889999999998555544555666555543322 389999999997532 00 00000 1
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
... ...+||+++.++.+|++.+.+.+.
T Consensus 139 ~~~-----~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 139 GHA-----LIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TEE-----EEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CCc-----eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 111 135788999999999999877653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=135.72 Aligned_cols=173 Identities=16% Similarity=0.104 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++.... .... ...|.......... .+..+.+|||||+.+.......... . ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~-~-~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSY-SFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE-M-TT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC------CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-H-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-H-HH
Confidence 35689999999999999999999987642 1111 12233333333334 5678899999998653211111000 1 11
Q ss_pred HhcccCCccEEEEEEecCCCCCH---HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQ---EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
+...+..+|++++|+|++++.+- ....++..+...+. ..|+++|+||+|+... ..+...... .+..+.
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~~ 172 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQIL 172 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC----CCCHHHHH----HHHHHH
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc--hhhHHHHHH----HHHHHH
Confidence 11124577999999999854432 22334444433221 2389999999999754 222111111 133344
Q ss_pred HhcC--CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~--~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+ ..++ .+||+++.++.+|++.+.+.+.
T Consensus 173 ~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 173 DNVKNPIKFS------SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HHCCSCEEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhcCCCceEE------EEecccCCCHHHHHHHHHHHHH
Confidence 4433 2222 5688889999999998877663
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=130.88 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++..+.+|||||....... .
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------~ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------R 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------H
Confidence 458999999999999999999998765221 1122233333334444 6788899999997653211 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|+++.........+..+.. .. .|+++|+||+|+.......+.+.+.. ...+...++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 142 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---AN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEWG 142 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---GS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTTT
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---CC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHcC
Confidence 234568899999999986666666555554432 22 28999999999975421222222222 100001111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+.+ .++||+++.++.+|++.+.+.+..
T Consensus 143 ~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 143 GDTIF----CKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSEEE----EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CcccE----EEEecCCCCCHHHHHHHHHHhhhh
Confidence 11111 256888999999999998887654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=130.94 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=99.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++..... ...|.......+.+ ++..+.+|||||.... ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHHH
Confidence 45899999999999999999998765421 12233333444445 6788999999996431 1223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ....+.... +. ....
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 138 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPAL 138 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chhc
Confidence 3456789999999999854333222 22222221110 012399999999999765 333222111 10 0011
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+ ....+|+.++.++.++++.+.+.+..
T Consensus 139 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 139 KDRKW---QIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTSCE---EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCce---EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 11111 12256888899999999998887654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-17 Score=131.96 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=101.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
.+.....+|+|+|..|+|||||+|.|++...... ....|.......+.. .+..+.+|||||....
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~----------- 76 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETFEK-GRVAFTVFDMGGAKKF----------- 76 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEEEE-TTEEEEEEEECCSGGG-----------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEEEe-CCEEEEEEECCCCHhH-----------
Confidence 3445668999999999999999999998775221 112233333333443 6788999999996431
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc------cccceEEEEEeCCCCCCcchhcHHHHhcccCC
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK------NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~------~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~ 166 (352)
.......+.++|++++|+|+++.-+-... .++..+...... ....|++||+||+|+... ...+++...
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~--- 151 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI--- 151 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH---
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH---
Confidence 22233456789999999999844332222 233332221100 012389999999999866 444433332
Q ss_pred hhHH--HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 167 KPLK--EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 167 ~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+. .+....+..+ ..+||+++.++.++++.+.+.+..
T Consensus 152 --~~~~~~~~~~~~~~------~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 --LDLTTLMGDHPFVI------FASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp --HTHHHHHTTSCEEE------EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred --hcchhhccCCeeEE------EEeeCCCccCHHHHHHHHHHHHHH
Confidence 21 1112222222 256888899999999999887654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=129.40 Aligned_cols=159 Identities=21% Similarity=0.250 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|+|||||+|.|++........ ..+.+.......+.. ++..+.+|||||....... ...+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence 589999999999999999999876311111 112233333344444 6778999999998764321 1223333334
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+..+|++++|+|++++++..+.....++.. .+. |+++|+||+|+... . +.... +. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~----p~ilv~nK~Dl~~~--~---~~~~~--------~~-~~~~- 135 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KGK----PVILVATKVDDPKH--E---LYLGP--------LY-GLGF- 135 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HTC----CEEEEEECCCSGGG--G---GGCGG--------GG-GGSS-
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cCC----CEEEEEECcccccc--h---HhHHH--------HH-hCCC-
Confidence 5578999999999997788777666666655 222 89999999998754 1 11111 11 1121
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....++|++++.++.++++.+.+.+
T Consensus 136 ----~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 136 ----GDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----CCeEEEecccCCChHHHHHHHHHhC
Confidence 1234678889999999999887653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=151.10 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK- 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~- 95 (352)
....+|+++|.+|+|||||+|.|+|...+......+ .|.......+.+ ++..+.+|||||+......... .+.+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~-~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG-TTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYET-TEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCC-CSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC-eEEEEEEEEEEE-CCceEEEEECCCCCcCcccchH-HHHHHHH
Confidence 345899999999999999999999886433322222 233333333444 7789999999998653211100 011111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....++..+|++++|+|++..++..+..++..+.. .+. |+++|+||||+........+++... +...+..
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 339 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 339 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCC----CEEEEEEChhcCCCchHHHHHHHHH-----HHHhccc
Confidence 11123457899999999998888888888777765 343 8999999999986422333433332 3333332
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~ 214 (352)
.+...+ .++||+++.++.+|++.+.+.+......
T Consensus 340 ~~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 340 LDYAPI-----LFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp GTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CCCCCE-----EEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 222222 2578999999999999999888664443
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=139.85 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~~~~~ 97 (352)
.+|+|+|.+|||||||+|.|+|...... ..+ ++|.......+.+ ++..+.+|||||+.+...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~-~~p-g~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG-NWP-GVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE-ECT-TSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc-CCC-CceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4899999999999999999999864322 222 3454555555555 678999999999987643210 1122222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
. ....+|++++|+|+++ + .........+... + .|+++|+||+|.... ..+.. ....+....+
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~-~----~pvilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFEL-G----KPVVVALNMMDIAEH--RGISI--------DTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS-C----SCEEEEEECHHHHHH--TTCEE--------CHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc-C----CCEEEEEEChhcCCc--CCcHH--------HHHHHHHHcC
Confidence 1 1268999999999983 2 1122222233221 2 399999999997643 11111 1222333334
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..++ ++||.++.++.+|++.+.+.
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVI------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred CCEE------EEECCCCCCHHHHHHHHHhh
Confidence 3333 57889999999999999887
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-17 Score=130.76 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.+++... . ....|.......+.+ ++..+.+|||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~---~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--D---TISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--S---SCCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--C---cccccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 3558999999999999999999998762 1 111233333444445 67889999999953 23333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-.+. .++..+..... ....|+++|+||+|+... ...++.... +. +..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 148 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDS 148 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-----hC--hhh
Confidence 44566789999999999844332221 23332222111 112399999999999765 333322111 00 000
Q ss_pred c-CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. ...+. ...+||+++.++.++++.+.+.+..
T Consensus 149 ~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 149 IRSHHWR----IQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceE----EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 1 11111 1356888899999999999888765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=134.13 Aligned_cols=162 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|..|+|||||+|.|++.... .....|....+..+.. .+..+.+|||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC----CccCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHH
Confidence 4579999999999999999999976541 1222233333333444 678899999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|+++.-+-.. ..++..+..... ....|+++|+||+|+... ...+++... +. . ...
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~-~-~~~ 154 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN-L-SAI 154 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT-G-GGC
T ss_pred HHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC--CCHHHHHHH-----hC-h-hhh
Confidence 334468999999999984322222 122222222110 112389999999999754 222222211 00 0 000
Q ss_pred -CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 -~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+.+ ..+||+++.++.+|++.+.+.+.
T Consensus 155 ~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 155 QDREICC----YSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CSSCEEE----EECCTTTCTTHHHHHHHHHHTCC
T ss_pred ccCCeeE----EEEECCCCCCHHHHHHHHHHHHH
Confidence 111111 25688899999999998877553
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=129.48 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
+...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 73 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT---------- 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh----------
Confidence 345899999999999999999999876521 22222333343444444 44 5688999999543221
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+........++ ...+.
T Consensus 74 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (181)
T 3tw8_B 74 -ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFA 140 (181)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred -hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence 12234578899999999984322222 223444444332 23899999999987541011111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 141 GQMGIQLF------ETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHTCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 33344443 4688889999999998887764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=150.72 Aligned_cols=177 Identities=18% Similarity=0.198 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~~~ 95 (352)
...+|+|+|++|+|||||+|.|+|.......... +.|.......+.+ ++..+.+|||||+.+...... +....+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~- 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-GTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR- 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH-
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC-CceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH-
Confidence 4589999999999999999999998753222222 2233333334444 778899999999865332110 1011111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++..+|++++|+|++++.+..+..++..+... +. ++++|+||+|+........++.... +...+..
T Consensus 251 -~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~ 319 (436)
T 2hjg_A 251 -ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-GK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 319 (436)
T ss_dssp -HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGG
T ss_pred -HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-CC----cEEEEEECccCCCcchHHHHHHHHH-----HHHhccc
Confidence 11233568999999999988888887766665542 32 8999999999986521223333332 3333322
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
..+..+ .++||+++.++.+|++.+.+.+.....
T Consensus 320 ~~~~~~-----~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 320 LDYAPI-----LFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp GTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCCE-----EEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 222212 257899999999999999888766443
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=129.68 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.........+.... ...+.+|||||..... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~---- 79 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------A---- 79 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------H----
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------h----
Confidence 345899999999999999999999876421 1111222222222233311 3467899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 148 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFAE 148 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 11223357899999999984332222 23444444443333 3899999999986431011111 233334
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+|++++.++.++++.+.+.+
T Consensus 149 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ENGLLFL------EASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 4343333 467888999999999887765
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=130.50 Aligned_cols=159 Identities=20% Similarity=0.183 Sum_probs=94.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++... ......|+... ...+.. ++. .+.+|||||.......
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 68 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM--------- 68 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC----CCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT---------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH---------
Confidence 347999999999999999999997764 12222222222 222233 444 3678999996553211
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|++++++-+... ..++..+..... ....|+++|+||+|+... ....+.. ..+.
T Consensus 69 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~~--------~~~~ 135 (189)
T 4dsu_A 69 --RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQA--------QDLA 135 (189)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHHH--------HHHH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHHH--------HHHH
Confidence 1112235799999999984322222 233344444322 122389999999999754 2222222 2233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ ++||.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 136 RSYGIPFI------ETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33344443 4678889999999998887764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=139.56 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=109.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~ 96 (352)
..+|+|+|.+|||||||+|.|+|... ..+..+ ++|+......+.+ .+..+.+|||||+.+..... ..+.+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~-g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWA-GVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECT-TSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCC-CeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47999999999999999999999874 333333 3344444444555 67789999999998755211 1112222222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
.. ....+|++++|+|++ .+ .....++..+... +. |+++|+||+|.... ..+.. ....+....
T Consensus 80 ~~-~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-~~----p~ivv~NK~Dl~~~--~~~~~--------~~~~l~~~l 141 (274)
T 3i8s_A 80 YI-LSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-GI----PCIVALNMLDIAEK--QNIRI--------EIDALSARL 141 (274)
T ss_dssp HH-HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-TC----CEEEEEECHHHHHH--TTEEE--------CHHHHHHHH
T ss_pred HH-hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-CC----CEEEEEECccchhh--hhHHH--------HHHHHHHhc
Confidence 21 236899999999998 32 2223333444432 32 99999999997643 11110 122233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC--CCCCchHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKR 222 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~--~~~~~~~~~~ 222 (352)
+..++ ++||.++.|+.+|++.+.+.+.... ...|..++..
T Consensus 142 g~~~i------~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~ 183 (274)
T 3i8s_A 142 GCPVI------PLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLN 183 (274)
T ss_dssp TSCEE------ECCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHH
T ss_pred CCCEE------EEEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHH
Confidence 43333 5788899999999999888765432 1235555533
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=129.76 Aligned_cols=166 Identities=19% Similarity=0.127 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++.... .....|.... ...+.+ ++. .+.+|||||.... .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 96 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP----ESYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDY-----------D 96 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC----CCCCCccceeEEEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence 4579999999999999999999976541 1111122111 122233 333 6789999995432 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc-----cCCh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-----ECPK 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~-----~~~~ 167 (352)
......+.++|++++|+|++++.+-... .++..+..... . .|+++|+||+|+... ....+.+.. ....
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHH
Confidence 2223345689999999999843322222 24444544332 2 289999999999865 333322210 0001
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+....+. .++ .+||+++.++.++++.+.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 172 RGQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 12334444444 333 56888899999999998887654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=147.49 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|||++|+|||||+|.|+|........ ..++|.......+.+ ++..+.+|||||+.... ...+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~-~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC-CCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 479999999999999999999876421212 223455555555566 78889999999987531 11112334444455
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
++.++|++++|+|++.+++..+.....++... +. |+++|+||+|.... . .... ..++. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~~----p~ilv~NK~D~~~~--~--~~~~-------~~~~~-~lg~- 139 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE--F--EREV-------KPELY-SLGF- 139 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH--H--HHHT-------HHHHG-GGSS-
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEeCCCCccc--c--HHHH-------HHHHH-hcCC-
Confidence 66799999999999878888777666666542 32 89999999997521 1 1111 01121 1121
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....++||.++.++.+|++.+...+..
T Consensus 140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 123367999999999999999887764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=132.09 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=99.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++... ......|....+......++. .+.+|||||.... ..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 86 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI----PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-----------DR 86 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------TT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC----CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH-----------HH
Confidence 447999999999999999999998764 222222332222222222443 4589999994332 12
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+.++|++++|+|++++-+-.+ ..++..+..... . .|+++|+||+|+.... .....+. ...+
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~~~~~--------~~~~ 155 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDVTKQE--------GDDL 155 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCCCHHH--------HHHH
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcccHHH--------HHHH
Confidence 23345678999999999984433333 234445554332 2 2999999999987430 0111111 2223
Q ss_pred HHhcCCc-EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+.. ++ .+||+++.++.++++.+.+.+..
T Consensus 156 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 156 CQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHh
Confidence 3333433 33 46888999999999998887654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=128.16 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|+|||||+|.+++...... ..|.......+.. .+..+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 4799999999999999999987654211 1132222333344 678899999999643 1112223
Q ss_pred ccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC-
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 177 (352)
.+.++|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... +. .....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~~ 133 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLRH 133 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCSS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--cccccC
Confidence 4578999999999984422222 122222221110 112399999999999754 333322211 00 00011
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. ...+||+++.++.++++.+.+.+.
T Consensus 134 ~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 134 RNWY----IQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CCEE----EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ccEE----EEEcccCCCcCHHHHHHHHHHHHh
Confidence 1111 235788899999999998877653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=130.82 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||++.|++... ..... ++......+.+.. +..+.+|||||... +..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY----RDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHES-----------LRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC----CCBCC-CCSCEEEEEECSSTTCCEEEEEECCCCHH-----------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----ccccC-CcceeeEEEEecCCCccEEEEEECCCChh-----------HHH
Confidence 347999999999999999999997664 11111 2222233344422 56789999999532 222
Q ss_pred -HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhc----ccccceEEEEEeCCCCCCc
Q 018636 96 -CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 -~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ilv~nk~D~~~~ 152 (352)
.....+.++|++++|+|++ .+.........++...+. .....|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2222356899999999998 332222233333322211 1112399999999999865
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-16 Score=148.34 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc-eeeE--------e----------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCE--------M---------------------------- 60 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t-~~~~--------~---------------------------- 60 (352)
...+|+|+|.+|+|||||+|+|+|....+.+..+++.. +... .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45899999999999999999999987655443333210 0000 0
Q ss_pred ---------------EEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH
Q 018636 61 ---------------KTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (352)
Q Consensus 61 ---------------~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 122 (352)
..+.++. ...+.||||||+.+... .......++..+|++++|+|++..++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 0000100 04689999999765321 112223334578999999999877888777
Q ss_pred HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..+.......+. |+++|+||+|....
T Consensus 220 ~~l~~~l~~~~~----~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENYIKGRGL----TVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHTTTSCC----CEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCC----CEEEEEECcccccc
Confidence 655422221232 89999999998643
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=129.38 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=95.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||.... ..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~--- 90 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NS--- 90 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HH---
Confidence 455799999999999999999999876421 11122233333333444 33 46789999995431 11
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|+++..+..+ ..++..+....... .|+++|+||+|+........++ ...+.
T Consensus 91 -~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~~---------~~~~~ 158 (192)
T 2il1_A 91 -ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQQ---------GEKFA 158 (192)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence 11222346899999999984333322 23344444443322 3899999999986431011111 22233
Q ss_pred Hhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
... +..++ .+||+++.++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 159 QQITGMRFC------EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 332 22222 5688889999999999877654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=126.09 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||.... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------HA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh-----------hh
Confidence 347999999999999999999997754111 1111222222223333 33 36788999995431 22
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|+++..+-.. ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKERHVSIQE---------AESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECcccccccccCHHH---------HHHHHH
Confidence 23345678999999999984332222 234444544443333 899999999987531111111 233444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||.++.++.++++.+.+.+.
T Consensus 140 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHY------HTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHHHh
Confidence 4444443 4688889999999999877653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-16 Score=130.13 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|.+|||||||+|.|+|..... +..+ ++|.......+.. .+..+.+|||||......... .+.+.....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~~~p-g~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYV-ANWP-GVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEE-EECT-TSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-cCCC-CceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 4799999999999999999999976532 2222 3444444444444 578899999999987543321 122222221
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
. ...+|++++|+|++ .+.. ...++..+.. .+ .|+++++||+|.... ..+. . ....+....+.
T Consensus 80 ~-~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~-~~----~pvilv~NK~Dl~~~--~~i~---~-----~~~~l~~~lg~ 141 (258)
T 3a1s_A 80 L-KGDADLVILVADSV-NPEQ-SLYLLLEILE-ME----KKVILAMTAIDEAKK--TGMK---I-----DRYELQKHLGI 141 (258)
T ss_dssp H-HSCCSEEEEEEETT-SCHH-HHHHHHHHHT-TT----CCEEEEEECHHHHHH--TTCC---B-----CHHHHHHHHCS
T ss_pred h-hcCCCEEEEEeCCC-chhh-HHHHHHHHHh-cC----CCEEEEEECcCCCCc--cchH---H-----HHHHHHHHcCC
Confidence 1 15789999999998 4422 2223333332 12 299999999997533 1111 0 13334444444
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.++ ++||.++.++.+|++.+.+...
T Consensus 142 ~vi------~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVV------FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEE------EEEeeCCcCHHHHHHHHHHHhh
Confidence 333 5788889999999999988775
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=128.19 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||......
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 80 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT----------- 80 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh-----------
Confidence 44799999999999999999999765421 11222333343444444 44 4688999999543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-. ...++..+........ |+++|+||+|+........++ ...+..
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 149 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV--NKLLVGNKCDLTTKKVVDYTT---------AKEFAD 149 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccccccCHHH---------HHHHHH
Confidence 1122336789999999998432211 2334444544433333 899999999987541111111 223334
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+|+.++.++.++++.+.+.+..
T Consensus 150 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 150 SLGIPFL------ETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HTTCCEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCcEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444444 46788899999999998887654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=131.77 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=98.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++...+... ...|.......+.+ ++..+.+|||||..... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------NL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 34589999999999999999999987632221 22333344444445 57899999999965421 12
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL- 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~- 173 (352)
....+.++|++++|+|++++.+-.. ..++..+...... ....|+++|+||+|+... ...++... .+
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------~~~ 152 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQ---------LLC 152 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHH---------HHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHH---------HhC
Confidence 2334568899999999984322111 1233333322110 012389999999999755 33332211 11
Q ss_pred -HhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 -QLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 -~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.... ..+. ...+||+++.++.+|++.+.+.+.
T Consensus 153 ~~~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWH----ICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEE----EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred hhhccCCceE----EEEccCCCCcCHHHHHHHHHHHHH
Confidence 1111 1111 125688889999999999877653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=129.76 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCc--eEEEEeCC
Q 018636 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTP 77 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~lvDtp 77 (352)
||..................+|+|+|..|+|||||+|.+++... . .....|+...+. .+.+ ++. .+.+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~ 76 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-P---TEYIPTAFDNFSAVVSV-DGRPVRLQLCDTA 76 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-C---CCCCCcccceeEEEEEE-CCEEEEEEEEECC
Confidence 33333333333333445668999999999999999999998763 2 111222222222 2233 444 56699999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchh
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (352)
|....... ....+.++|++++|+|++++.+..+. .++..+..... . .|+++|+||+|+... .
T Consensus 77 G~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~ 140 (201)
T 2q3h_A 77 GQDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED--V 140 (201)
T ss_dssp CSTTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC--H
T ss_pred CCHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc--h
Confidence 97653211 22345789999999999843333332 34444554433 2 389999999998753 2
Q ss_pred cHHHHhc----ccC-ChhHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 156 TLEDFLG----HEC-PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 156 ~l~~~l~----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.....+. ... ......+....+. .++ .+||+++.++.++++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYI------ECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCCcEEE------EEecCCCCCHHHHHHHHHHHHh
Confidence 1111110 000 0112233333333 332 5688889999999998877653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=132.78 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+++.......+.+ ++ ..+.+|||||.......
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI--------- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH---------
Confidence 445899999999999999999999765411 11122233333333444 44 46899999996442211
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+... ....+. ...+.
T Consensus 86 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 151 (213)
T 3cph_A 86 --TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALA 151 (213)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHHHH
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHHHH
Confidence 1223368899999999883322221 23445555443322 289999999998533 221111 12223
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 152 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 152 KELGIPFI------ESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHTCCEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333333 4678888999999998877654
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=127.52 Aligned_cols=160 Identities=15% Similarity=0.073 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++.......++ .......+.+ ++..+.+|||||..... ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-----~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-----IGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-----SCSSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-----CccceEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 458999999999999999999997654322222 2222233344 67889999999975422 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh-
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL- 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~- 175 (352)
...+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...++... .+..
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~---------~~~~~ 145 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQ---------FLKLT 145 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHH---------HHTGG
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHH---------HhChh
Confidence 2234689999999999854333222 23333322210 112399999999999754 22222111 1111
Q ss_pred -cC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 -CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 -~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. ..+. ...+||+++.++.++++.+.+.+..
T Consensus 146 ~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 146 SIKDHQWH----IQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp GCCSSCEE----EEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhcCCCcE----EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 11 1111 1256888999999999999887644
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=121.86 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=97.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++... ......|....+......++ ..+.+|||||.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 70 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF---------- 70 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC----CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------
Confidence 358999999999999999999996553 11222232222222222244 45689999997653211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|++++-+-.. ..++..+...+.. ...|+++|+||+|+........++ ...+..
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (181)
T 3t5g_A 71 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEE---------GKALAE 139 (181)
T ss_dssp -CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHH---------HHHHHH
Confidence 1234568899999999983222222 2233333333221 123899999999986441111111 223444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 140 ~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 140 SWNAAFL------ESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HTTCEEE------ECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HhCCcEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 4444443 46888999999999999887755
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=132.48 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||++.+++... ......|+..... .+.+ ++.. +.+|||||....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 91 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY----------- 91 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC----CC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGG-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC----CCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhh-----------
Confidence 4568999999999999999999986544 1111222222222 2223 4444 459999996432
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----C-C
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-P 166 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~-~ 166 (352)
.......+.++|++++|+|++++.+..+. .++..+..... . .|+++|+||+|+... ....+.+... . .
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhccccccccH
Confidence 12233456789999999999843333332 34444544432 2 389999999998765 3222221110 0 0
Q ss_pred hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.....+....+...+ ..+||+++.++.++++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~-----~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIGAVKY-----LECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcEE-----EEeeCCCCCCHHHHHHHHHHH
Confidence 112233344343322 257888999999999988654
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=125.89 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++..... ....|..... ..+.+ ++ ..+.+|||||.... .
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 83 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------S 83 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc----ccCCccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------H
Confidence 34799999999999999999999775411 1111222212 22233 43 34789999995431 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+..+|++++|+++++..+..+ ..++..+..... ....|+++|+||+|+... ....+. ...+.
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~ 152 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTR--TVDTKQ--------AHELA 152 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CSCHHH--------HHHHH
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcc--cCCHHH--------HHHHH
Confidence 222344568999999999984333222 233444444332 112389999999998753 211111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..++ .+|+.++.++.++++.+.+.+..
T Consensus 153 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 153 KSYGIPFI------ETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 33333333 46788889999999998877654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=124.51 Aligned_cols=162 Identities=17% Similarity=0.065 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 45799999999999999999999765411 11111222222233333 44 3788999999433 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+..+|++++|+++++..+... ..++..+...... ....|+++|+||+|+... ....+. ...+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHH--------HHHH
Confidence 33445678999999999983322222 2344444443321 012389999999998743 211111 2223
Q ss_pred HH-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. ..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 142 CRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33 2222333 5688889999999998877664
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-17 Score=127.49 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=96.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 4799999999999999999999776411 11111222233333333 33 36789999996443211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+... ....+. ...+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHHH
Confidence 1123357899999999984322222 23444555443322 399999999998543 211111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+|+.++.++.++++.+.+.+..
T Consensus 137 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFI------ESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 343333 46888899999999998887654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=126.76 Aligned_cols=161 Identities=22% Similarity=0.199 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+.. ...+.+|||||..... ..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 77 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEF--QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-----------SL 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTT--SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-----------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCc--CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-----------hh
Confidence 347999999999999999999998764221 111122222222233311 3478899999954311 11
Q ss_pred HhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+ .....++..+....... .|+++|+||+|+........++ ...+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~~~ 146 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTYAQE 146 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence 2223467899999999984333 22234445554443222 3899999999987541111111 2233333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+|++++.++.++++.+.+.+
T Consensus 147 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 147 NGLFFM------ETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp TTCEEE------ECCSSSCTTHHHHHHHHHHTC
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 343333 467888999999999887765
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-16 Score=124.68 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=98.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||... +..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRS 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 45899999999999999999999775411 11122222333333334 44 4778999999533 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+.........+ ...+..
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 143 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLE---------ASRFAQ 143 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 33445678999999999984322221 23444444433332 3999999999986431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 144 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 144 ENELMFL------ETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4678889999999998877653
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-16 Score=130.75 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|||||||+|.|+|... ..+..+ ++|.......+.+ .+..+.+|||||+.+....... ..+... .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~-~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWP-GVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARN-F 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECT-TSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHH-H
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCC-CeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHH-h
Confidence 37999999999999999999999865 332322 2344444444555 6778999999999875433321 112111 1
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
....++|++++|+|++ .+ .....++..+... +. .|+++++||+|+... .... .....+....+.
T Consensus 77 ~~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDST-CL-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--KGAK--------IDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--HTCC--------CCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCC-cc-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--cccH--------HHHHHHHHHcCC
Confidence 1235799999999998 32 1222222223222 21 289999999997533 1111 012333333344
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
.++ ++|+.++.++.++++.+...+....
T Consensus 141 ~~~------~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 PVI------PTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp CEE------ECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred cEE------EEEeCCCCCHHHHHHHHHHHHhccc
Confidence 433 6788899999999999999886543
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-16 Score=124.21 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=98.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
+...+|+|+|.+|+|||||+|.|++...... ...+.+.......+... ....+.+|||||......
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 86 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------- 86 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC--cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------
Confidence 3457999999999999999999997764211 11112222222223331 134778999999655321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........+ . ...+..
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 155 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE-D--------GRRLAD 155 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHH
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH-H--------HHHHHH
Confidence 12334568999999999974322222 23444444433222 399999999998753101111 1 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|++++.++.+|++.+.+.+.
T Consensus 156 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 156 DLGFEFF------EASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 3343333 4688889999999999877664
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-16 Score=123.51 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++....... ...+.+.......+.. ++ ..+.+|||||.... ..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HH
Confidence 3489999999999999999999977642111 1111222222222233 44 36789999995431 22
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 144 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAK 144 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHH
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23345568899999999984332222 23445555443322 3999999999997541111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 145 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFM------ETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333333 46888899999999998877643
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=143.77 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~-~~ 96 (352)
...+|+|+|++|||||||+|.|+|.......+.++ .|.......+.+ ++..+.+|||||+........+..+.+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g-tT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG-TTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCC-CcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 34899999999999999999999986422222222 233333334445 7888999999998432111000000000 00
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++..+|++++|+|++...+..+......+.. .+. ++++|+||||+........+++... +...+...
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RGR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccCCCchhhHHHHHHHH-----HHHHhccC
Confidence 0112346799999999987777766555554443 343 8999999999876421223333222 22222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
....+ ..+||+++.++.+|++.+.+.+.....
T Consensus 327 ~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 327 DYSPL-----IFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp TTSCE-----EECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred CCCcE-----EEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 22212 257899999999999999988766443
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=127.59 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|.+|+|||||+|.|++...... ...+.........+.+.. +..+.+|||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF--QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhhh
Confidence 47999999999999999999997654211 111222222222233311 456789999995431 1112
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++.+-.. ..++..+........ |+++|.||+|+........++ ...+....
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 141 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQE---------AQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCccccccCHHH---------HHHHHHHc
Confidence 223468899999999984322222 233444444333333 889999999986431011111 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ .+||+++.++.+|++.|.+.+
T Consensus 142 ~~~~~------~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 SLLFM------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHTS
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 43333 468888999999999887654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=128.71 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC-----------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------- 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (352)
...+|+|+|..|+|||||+|.|++..... ....+.........+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 35899999999999999999999876421 11111111222222222 22
Q ss_pred ----------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccccc
Q 018636 69 ----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVF 137 (352)
Q Consensus 69 ----------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 137 (352)
..+.+|||||...... .....+..+|++++|+|++++.+..+ ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 5789999999544221 11223357899999999984333222 234444444333
Q ss_pred ceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 138 ~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.|+++|+||+|.... ....++ ...++...+..++ ++||+++.++.++++.+.+.+.
T Consensus 148 ~piilv~NK~D~~~~-~~~~~~---------~~~~~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 148 YIIILVANKIDKNKF-QVDILE---------VQKYAQDNNLLFI------QTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CEEEEEEECTTCC-C-CSCHHH---------HHHHHHHTTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCcccc-cCCHHH---------HHHHHHHcCCcEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 399999999993222 112222 2334444444333 4678889999999999877664
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=122.84 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++... ......|..... ..+.+ ++ ..+.+|||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-------~~--- 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-------AA--- 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-------HH---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc----CCCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-------HH---
Confidence 348999999999999999999997764 111112222211 22233 33 36789999995432 11
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|+++..+-.. ..++..+..... ....|+++|+||+|+........++ ...+.
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 136 (168)
T 1u8z_A 68 -IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 136 (168)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHH---------HHHHH
Confidence 11222346899999999983322221 233444444332 1123999999999987531111221 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 137 DQWNVNYV------ETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 33343333 4678888999999999877653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=123.05 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.+++..... ....+.. .....+.+ ++ ..+.++||||.... ..+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~- 68 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE----KYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF--------ASMR- 68 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc----cCCCCcceeEEEEEEE-CCEEEEEEEEECCCchhh--------HHHH-
Confidence 4799999999999999999998765411 1111221 11222333 33 34789999996542 1111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..+|++++|+++++..+... ..++..+..... ....|+++|+||+|+........+ . ...+..
T Consensus 69 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 136 (167)
T 1kao_A 69 --DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSS-E--------GRALAE 136 (167)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHH-H--------HHHHHH
T ss_pred --HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHH-H--------HHHHHH
Confidence 112346799999999983322221 233333433322 112399999999998643101111 1 122333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+|+.++.++.++++.+.+.+..
T Consensus 137 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 137 EWGCPFM------ETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHTSCEE------EECTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence 3333333 46888999999999998876643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=127.98 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|..|+|||||+|.|++...... ...+.........+.... ...+.+|||||... +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSC--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 47999999999999999999998764211 111122222222333311 34778999999643 12223
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........+ . ...+....
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 143 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE-R--------GRQLADHL 143 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH-H--------HHHHHHHH
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH-H--------HHHHHHHC
Confidence 445568899999999984322221 23444444432222 399999999998754101111 1 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..++ .+||+++.++.++++.+.+.+.
T Consensus 144 ~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 144 GFEFF------EASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TCEEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 43333 4688888999999998877653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=127.35 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT----------- 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence 34799999999999999999999876421 11122222333333444 43 3688999999654321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 141 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFAD 141 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHH
Confidence 12234578899999999984333222 23444444433322 3899999999997541011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 142 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ANKMPFL------ETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HTTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3343333 46788899999999988877643
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=126.53 Aligned_cols=160 Identities=19% Similarity=0.138 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|.+|+|||||+|.|++...... ...+...........+. ....+.+|||||..... ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 72 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN--INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------ALA 72 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-----------ccc
Confidence 47999999999999999999998764211 11111122222223331 13567899999974321 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++.+... ..++..+....... .|+++|.||+|+.... ....+. ...+....
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~-~v~~~~--------~~~~~~~~ 141 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVR-EVMERD--------AKDYADSI 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGC-CSCHHH--------HHHHHHHT
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccccc-ccCHHH--------HHHHHHHc
Confidence 223467899999999984333222 23445555432322 3899999999987531 111111 22233343
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ .+|++++.++.+|++.+.+.+
T Consensus 142 ~~~~~------~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIFV------ETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 43333 467888999999999887654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=128.89 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||++.|++.......++ .......+.+ ++..+.+|||||.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t-----~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEE-----TTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCc-----CCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 3458999999999999999999998753222122 2222333444 5788999999995431 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++.++|++++|+|++++-+-... .++..+..... ....|+++|.||+|+... ...++.... +. +..
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~~ 146 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN--LHT 146 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC--CCHHHHHHH-----hC--chh
Confidence 23344689999999999844332221 22222222111 112389999999999765 333222111 00 000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.....+ ...++||.++.++.++++.+.+.+
T Consensus 147 ~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 147 IRDRVW---QIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCSSCE---EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCce---EEEEccCCCCCCHHHHHHHHHHHH
Confidence 111111 113568899999999999887654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-16 Score=122.33 Aligned_cols=160 Identities=21% Similarity=0.128 Sum_probs=85.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|+|.......+..+ ++.. ....+ + ...+.++||||.... ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~~i~D~~g~~~~-----------~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG--HTYD--RSIVV-DGEEASLMVYDIWEQDGG-----------RWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEE--EEEEE-TTEEEEEEEEECC-------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccc--cceE--EEEEE-CCEEEEEEEEECCCCccc-----------hhh
Confidence 3799999999999999999999876422222111 1111 11222 3 345689999995542 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 135 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVV 135 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHH
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHH---------HHHHHHH
Confidence 2234468899999999984322222 223333333211 1123899999999987541111111 1223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+||+++.++.++++.+.+.+..
T Consensus 136 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 FDCKFI------ETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TTCEEE------ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred hCCcEE------EeccCCCCCHHHHHHHHHHHHHh
Confidence 343333 56888999999999998877643
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=126.21 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=99.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++.......+ |.......+.+ ++..+.+|||||....... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------~ 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------W 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------H
Confidence 45899999999999999999998765422222 22222333444 6788999999997653211 2
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...++.... +. ....
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 153 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VSSI 153 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hhhc
Confidence 2345689999999999844333222 22222222110 012399999999999765 333322211 00 0011
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
....+ ...++||.++.++.++++.+.+.+...
T Consensus 154 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 154 MNRTW---TIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CSSCE---EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred cCCce---EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 11111 123568888999999999998877653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=125.68 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+. ....+.+|||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 345899999999999999999999765411 111112222223333332 134788999999433 22
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
......+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.........+. ...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~~ 144 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQE 144 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HHH
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HHH
Confidence 233445678999999999984322222 2334444433320 11238999999999864311111111 222
Q ss_pred HHH-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.. ..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 145 LAKSLGDIPLF------LTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 333 1222333 4678889999999998877653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=123.83 Aligned_cols=165 Identities=20% Similarity=0.198 Sum_probs=96.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVL-KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
+.....+|+|+|.+|+|||||+|.|++.... .....|....+.. ... .....+.+|||||.......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS----EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC----SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence 4445689999999999999999999987652 2222222222221 122 13456789999997653221
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
....+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.........+ ...
T Consensus 89 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 154 (201)
T 3oes_A 89 ----PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVE---------GKK 154 (201)
T ss_dssp ----CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred ----HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHH---------HHH
Confidence 2234568999999999983322222 123333322211 1123899999999987441011111 222
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....+..++ .+||+++.++.++++.+.+.+..
T Consensus 155 ~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 155 LAESWGATFM------ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 3333344433 46888999999999998887754
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=128.73 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=92.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++.......+ |.......+.. .+..+.+|||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC-----cCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 456899999999999999999998765422111 22222333344 678899999999754221 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...+++... +. ...
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~ 159 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA--MPVSELTDK-----LG--LQH 159 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--ccc
Confidence 11223578999999999844332221 22222221110 012399999999999754 333322221 00 000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.....+. ...+||.++.++.++++.+.+.+
T Consensus 160 ~~~~~~~---~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 160 LRSRTWY---VQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CSSCCEE---EEECBTTTTBTHHHHHHHHHHHT
T ss_pred ccCCceE---EEECcCCCcCCHHHHHHHHHHHH
Confidence 1111111 13578889999999999887654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=123.61 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|...... ..+ +.|.......+.+ ++..+.+|||||......... .+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG-NWP-GVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc-CCC-CcceeeeEEEEEE-CCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence 37899999999999999999998754221 111 2233333333444 677899999999876432211 122222111
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
. ..++|++++|+|++ .+. ....++..+.. .+ .|+++|+||+|+... ..+. . ....+....+.
T Consensus 78 ~-~~~~~~~i~v~D~~-~~~-~~~~~~~~~~~-~~----~p~ilv~nK~Dl~~~--~~~~----~----~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDAT-ALE-RNLYLTLQLME-MG----ANLLLALNKMDLAKS--LGIE----I----DVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETT-CHH-HHHHHHHHHHH-TT----CCEEEEEECHHHHHH--TTCC----C----CHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCC-chh-HhHHHHHHHHh-cC----CCEEEEEEchHhccc--cChh----h----HHHHHHHHhCC
Confidence 1 13689999999987 321 12223333332 12 289999999997532 1110 0 12223333343
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.++ ++||+++.++.++++.+.+.+
T Consensus 140 ~~~------~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVV------PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEE------ECBGGGTBSHHHHHHHHHHHT
T ss_pred CEE------EEEcCCCCCHHHHHHHHHHHh
Confidence 333 578999999999999887654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=126.64 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC--cceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+|+|.+|+|||||+|.|++... ..... ++.......+.+ ++ ..+.+|||||... +
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF----NSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------F 70 (183)
T ss_dssp EEEEEEEECCCCC--------------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------h
Confidence 348999999999999999999987653 11111 122222333334 44 5788999999543 2
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.......+.++|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........++ ...+
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~ 139 (183)
T 2fu5_C 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKL 139 (183)
T ss_dssp ---CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHH
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHH---------HHHH
Confidence 2223345678999999999984322222 23444444432222 3999999999987531011111 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+..++ .+||+++.++.++++.+.+.+.
T Consensus 140 ~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 140 ALDYGIKFM------ETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHTCEEE------ECCC---CCHHHHHHHHHHHHH
T ss_pred HHHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333343333 4688889999999998877653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-17 Score=129.15 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh-----------hh
Confidence 37999999999999999999997764211 1111222222223333 33 367899999954311 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|++++.+..+ ..++..+........ |+++|+||+|+.... .....+. ...+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~v~~~~--------~~~~~ 138 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI--IIALVGNKIDXLQEGGERKVAREE--------GEKLA 138 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGSSCCCCSCHHH--------HHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCccccccccCCCHHH--------HHHHH
Confidence 2223468899999999984322222 233444444333333 899999999987431 0111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+..++ .+||.++.++.++++.+.+.+
T Consensus 139 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 139 EEKGLLFF------ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33343333 467888999999999876543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=137.09 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC---CC---cceee---------------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SG---VTKTC--------------------------------- 58 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~---~~---~t~~~--------------------------------- 58 (352)
...+|+|+|.+|+|||||+|+|+|...++.+... .+ .++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 3479999999999999999999998753322110 00 01100
Q ss_pred ------------------EeEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcccCCccEEEEEEecC-CCC
Q 018636 59 ------------------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF 117 (352)
Q Consensus 59 ------------------~~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~ 117 (352)
....+..+.+..+.+|||||+...... ...+...+......++..+|++++|++.. ..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000012223567999999999752211 11122334444445556889999999874 344
Q ss_pred CHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccc---
Q 018636 118 SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG--- 193 (352)
Q Consensus 118 ~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~--- 193 (352)
...+ ...+..+.. .+ .|+++|+||+|..... ..+.+++.. .+..++..++. ....|+.+
T Consensus 183 ~~~~~~~i~~~~~~-~~----~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~---v~~~sa~~~~~ 245 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-EG----KRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIG---VINRSQEDIIA 245 (315)
T ss_dssp TTCSHHHHHHHHCS-SC----SSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEE---CCCCCHHHHSS
T ss_pred hhhHHHHHHHHhCC-CC----CcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEE---EecCChhhhcc
Confidence 4333 244444432 12 3899999999998652 112222221 00011123333 33446655
Q ss_pred hHHHHHHHHHHHHHHHh
Q 018636 194 TEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 194 ~~~~~~L~~~i~~~~~~ 210 (352)
+.++.++++.+...++.
T Consensus 246 ~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 68899999999988876
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=125.36 Aligned_cols=160 Identities=22% Similarity=0.196 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++... ......|..... ..+.+ ++ ..+.+|||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC----CCSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc--------HHHH
Confidence 458999999999999999999997664 111222222222 22233 44 36789999996542 1111
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
...+..+|++++|+++++..+-. ...++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 84 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 150 (187)
T 2a9k_A 84 ---DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 150 (187)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred ---HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHH
Confidence 12234679999999998332211 22344444443321 123899999999986531111121 23334
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 151 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 151 EQWNVNYV------ETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 44444433 4678888999999998877664
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-16 Score=125.28 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=98.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++.... . ....+++.......+.+ ++ ..+.+|||||... +..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-P-GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-T-TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-C-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 3479999999999999999999876541 1 11112223333333444 44 3678999999432 223
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 159 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSE 159 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHH
Confidence 34456678999999999883322211 23444454443322 3899999999986431011111 122222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 160 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 160 AQDMYYL------ETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333333 4688889999999998876653
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-16 Score=124.54 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=96.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeC----------CceEEEEeCCCCCCCCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD----------GQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~lvDtpG~~~~~~~~ 86 (352)
...+|+|+|.+|+|||||+|.|++...... ...+...... ...+.... ...+.++||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 458999999999999999999997654111 1111111111 12222311 24789999999633
Q ss_pred HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
+.......+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........+ .
T Consensus 83 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~----- 149 (195)
T 3bc1_A 83 ------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE-E----- 149 (195)
T ss_dssp ------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH-H-----
T ss_pred ------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-H-----
Confidence 12223345578999999999984333222 234444444322 012389999999998753101111 1
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+..++ .+|+.++.++.++++.+.+.+.
T Consensus 150 ---~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 150 ---ARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ---HHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 2223333343333 4678888999999998877653
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=125.82 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++.......++.+ .....+.+ ++..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG-----FNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT-----CCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc-----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 345899999999999999999999765422222222 22233344 578889999999765321 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...++... .+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~---------~~~~ 146 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSK---------ELNL 146 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHH---------HTTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC--CCHHHHHH---------HhCc
Confidence 23345789999999999854443322 23333322110 122399999999998754 22222111 1111
Q ss_pred c--C-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 C--D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~--~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. . ..+ ....+|+.++.++.++++.+.+.+..
T Consensus 147 ~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 147 VELKDRSW----SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTCCSSCE----EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccccCCce----EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 0 1 111 12357889999999999998877643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=128.81 Aligned_cols=163 Identities=17% Similarity=0.106 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|..|+|||||+|.|++........ .+.+.......+... .+..+.+|||||. ..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~ 88 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQ-----------ERYRTI 88 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHH-----------HHCHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCCh-----------HHHHHH
Confidence 34799999999999999999999765311100 111111222222221 3557899999992 223333
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+-. ...++..+........ |+++|+||+|+........+ . ...+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA--QVILVGNKCDMEEERVVPTE-K--------GQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHH-H--------HHHHHHH
Confidence 444557899999999998332221 1234455544332333 89999999998643101111 1 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+|++++.++.++++.+.+.+..
T Consensus 158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFF------EASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 344333 46888899999999998877643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-16 Score=125.87 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|..|+|||||+|.|++..... ....+++.......+.+ ++ ..+.+|||||.... ..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RT 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HH
Confidence 34799999999999999999998765411 11111112222333334 44 47889999995431 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-.. ..++..+....... .|++||+||+|+........++ ...+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 162 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAE---------AQSLAE 162 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHH---------HHHHHH
Confidence 22234468899999999883322211 23444444433222 3899999999987531011111 233444
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+. .++ .+||+++.++.++++.+.+.+..
T Consensus 163 ~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 163 HYDILCAI------ETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444 333 56888899999999998877654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=127.87 Aligned_cols=163 Identities=23% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
....+|+|+|.+|+|||||+|.|++...... . ..+.........+... ....+.+|||||..... .
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 87 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN-I-SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-----------S 87 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT-C-CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------G
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC-c-CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------h
Confidence 3458999999999999999999998764111 1 1111111222222221 24578899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~ 156 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYAE 156 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 11223467899999999984333222 23444444433222 3999999999986431011111 233344
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|++++.++.+|++.+.+.+.
T Consensus 157 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 SIGAIVV------ETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTTCEEE------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred HcCCEEE------EEeCCCCcCHHHHHHHHHHHHH
Confidence 4443333 4688889999999999877653
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=125.98 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|..|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||.......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 86 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSI---------- 86 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhh----------
Confidence 347999999999999999999997654211 1111222222333333 33 46789999996442211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 87 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 154 (191)
T 2a5j_A 87 -TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKREE---------GEAFAR 154 (191)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHHH---------HHHHHH
Confidence 1123357899999999983322222 23444444433222 3899999999986431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 155 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 155 EHGLIFM------ETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4577888999999998876653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=130.17 Aligned_cols=159 Identities=16% Similarity=0.091 Sum_probs=94.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|..|+|||||+|.|++.......++.+ .....+.+ ++..+.+|||||..... ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-----SNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS-----SSCEEEEE-TTEEEEEEEESSSGGGT-----------CGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc-----eeeEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 45799999999999999999999876522222222 12233344 67889999999974321 122
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++.+-... .++..+..... ....|+++|+||+|+... ...++.... +. +....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~~~~~ 153 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LK-LTSIK 153 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT-GGGCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-----hC-ccccc
Confidence 3445789999999999855443322 23333322110 112399999999999754 222221111 00 00000
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+. ...+||+++.++.++++.+.+
T Consensus 154 ~~~~~----~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 DHQWH----IQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp SSCEE----EEECBTTTTBTHHHHHHHHHT
T ss_pred CCceE----EEEccCCCCcCHHHHHHHHHh
Confidence 11111 125688899999999988754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=144.69 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=89.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+|+|.+|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+.+... .+.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~---~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-GTTRDYIEECFIH-DKTMFRLTDTAGLREAGE---EIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEE-CCeEEEEEECCCCCcchh---HHHHHHHHHHH
Confidence 478999999999999999999988642221211 2233443444455 788999999999876321 11111112234
Q ss_pred cccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|+++..+..... ...++..+ .. .|+++|+||+|+... ..... .. +... ..
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~---~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~---~~ 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PA---AKFLTVANKLDRAAN--ADALI--RA-----IADG---TG 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TT---SEEEEEEECTTSCTT--THHHH--HH-----HHHH---HT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CC---CCEEEEEECcCCCCc--cchhH--HH-----HHhc---CC
Confidence 4667899999999999666652221 22223322 21 399999999999865 33221 11 2211 01
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. ...+||+++.++.+|++.|.+.+.
T Consensus 372 ~~------~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TE------VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SC------EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred Cc------eEEEEECCCCCHHHHHHHHHHHHh
Confidence 12 235789999999999999999886
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-16 Score=126.23 Aligned_cols=161 Identities=22% Similarity=0.189 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||+|.|++... ......|.... ...+.+ ++ ..+.+|||||.... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC----CTTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhh--------HHH
Confidence 3458999999999999999999997764 11122222221 222333 44 36789999996542 111
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
....+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+........++ ...+
T Consensus 79 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 145 (206)
T 2bov_A 79 ---RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNR 145 (206)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred ---HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHH
Confidence 1122346799999999983322212 234444444332 1123999999999987531111221 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+..++ .+|+.++.++.++++.+.+.+.
T Consensus 146 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 146 AEQWNVNYV------ETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333343333 4677888999999998877653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=127.37 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=96.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
+.....+|+|+|..|+|||||+|.|++... ......|+...+. .+.+ ++ ..+.+|||||........ .
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~----~ 75 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYF----VSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR----E 75 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSC----CSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH----H
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcC----ccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH----H
Confidence 444568999999999999999999998754 1222223222222 2233 44 467889999976532111 1
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPL 169 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~ 169 (352)
..+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+... ..+ .+. .
T Consensus 76 -------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~--------~ 137 (181)
T 2fn4_A 76 -------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQ--RQVPRSE--------A 137 (181)
T ss_dssp -------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGG--CCSCHHH--------H
T ss_pred -------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccCHHH--------H
Confidence 11235799999999983222221 223333322221 112389999999998753 211 111 1
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+....+..++ .+|++++.++.++++.+.+.+..
T Consensus 138 ~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 138 SAFGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 223333333333 46788899999999998877644
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=126.32 Aligned_cols=165 Identities=17% Similarity=0.144 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.+++...... ...+.+.... ..+.+ ++ ..+.+|||||..... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~ 88 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYD-----------R 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGT-----------T
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHH-----------H
Confidence 347999999999999999999997654111 1111111111 12233 43 367899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~~ 168 (352)
.....+..+|++++|+|++++-+-.. ..++..+..... . .|+++|+||+|+... ....+.+.. ... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHHH
Confidence 22335578999999999983322222 234455554332 2 289999999999865 322222211 000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+....+. .++ .+||+++.++.+|++.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 164 GRDMANRISAFGYL------ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 2333444443 232 568888999999999887754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=127.93 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++..... ....|....... ... + ...+.+|||||.... ..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~- 72 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD----TYIPTIEDTYRQVISC-DKSVCTLQITDTTGSHQF--------PAM- 72 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC----TTSCCCCEEEEEEEEE-TTEEEEEEEEECCGGGSC--------HHH-
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC----cccCccccceeEEEEE-CCEEEEEEEEeCCChHHh--------HHH-
Confidence 45899999999999999999999765411 111122111111 222 3 336789999996542 111
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+... ....+. ...+.
T Consensus 73 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 73 --QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred --HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 1122346799999999983222221 2244444444322122389999999998754 211111 12223
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..++ .+||.++.++.+|++.+.+.+..
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 QEWKCAFM------ETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHhCCeEE------EEecCCCCCHHHHHHHHHHHHhh
Confidence 33333333 46888899999999998887654
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=125.14 Aligned_cols=162 Identities=23% Similarity=0.177 Sum_probs=94.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCce--EEEEeCCCCCCCCCCcHHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
.....+|+|+|.+|+|||||+|.|++... ......+.... ...... ++.. +.+|||||....... .
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----~-- 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIF----VDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----R-- 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS----H--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH----H--
Confidence 34568999999999999999999997654 11222222222 222233 4443 456999996542211 1
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........+ . ...
T Consensus 84 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~-~--------~~~ 148 (183)
T 3kkq_A 84 -----EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRD-Q--------GKE 148 (183)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHH-H--------HHH
T ss_pred -----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHH-H--------HHH
Confidence 112246799999999984322211 233333433222 112389999999998753101111 1 222
Q ss_pred HHHhcCCcEEEEcCCCccccc-chHHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~-~~~~~~~L~~~i~~~~~ 209 (352)
+....+..++ .+|+. ++.++.++++.+.+.+.
T Consensus 149 ~~~~~~~~~~------~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 149 MATKYNIPYI------ETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHTCCEE------EEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHhCCeEE------EeccCCCCCCHHHHHHHHHHHHh
Confidence 3334344444 35777 78999999999887664
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-16 Score=123.45 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||+|.|+|...+.. ..+ +.+.......+.+ ++..+.+|||||......... .+.+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-NWP-GVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-ECT-TSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-CCC-CeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 458999999999999999999998754322 221 2333444444444 678899999999876532211 11222111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.. ...++++++|+|.+ .+ .....++..+.. .. .|+++|+||+|+... ..+. . ....+....+
T Consensus 81 ~~-~~~~~~~i~v~d~~-~~-~~~~~~~~~~~~---~~--~piilv~nK~Dl~~~--~~~~---~-----~~~~~~~~~~ 142 (188)
T 2wjg_A 81 II-NEKPDLVVNIVDAT-AL-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGIE---I-----DVDKLEKILG 142 (188)
T ss_dssp HH-HHCCSEEEEEEEGG-GH-HHHHHHHHHHHT---TT--CCEEEEEECHHHHHH--TTCC---C-----CHHHHHHHHT
T ss_pred Hh-ccCCCEEEEEecch-hH-HHHHHHHHHHHh---cC--CCEEEEEEhhhcccc--ccch---H-----HHHHHHHHhC
Confidence 11 12578999999987 32 112223333322 12 289999999997533 1111 1 1333444444
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..++ .+|++++.++.+|++.+.+.+...
T Consensus 143 ~~~~------~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 143 VKVV------PLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CCeE------EEEecCCCCHHHHHHHHHHHHHhc
Confidence 4443 468888999999999999887653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=138.52 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=95.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++....... .|.......+.. .+..+.||||||..... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence 3469999999999999999999987642211 233344444444 67889999999944321 112
Q ss_pred hcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+..+|++++|+|+++.-+-.. ..+...+...... ..|++||+||+|+... ...+++... +......
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~--~~~~~i~~~-----~~~~~~~ 297 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA--MNAAEITDK-----LGLHSLR 297 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC--CCHHHHHHH-----HTCTTCC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc--cCHHHHHHH-----hchhhhh
Confidence 223468899999999984433322 2222332222111 2389999999999865 333332221 1100000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+. ...+||+++.++.+|++.|.+.+.
T Consensus 298 -~~~~~----~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 -HRNWY----IQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp -SSCEE----EEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -cCCCE----EEEEECCCCcCHHHHHHHHHHHHH
Confidence 01111 125688899999999999888764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-16 Score=123.19 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~- 94 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||... +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD--RTEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS--SCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 44799999999999999999999765421 11122222233333334 33 4788999999422 21
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEI 172 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~ 172 (352)
......+..+|++++|+|+++..+-.. ..++..+...+. ....|+++|+||+|+... ..+ .+. ...+
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~--------~~~~ 153 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSA--IQVPTDL--------AQKF 153 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGG--CCSCHHH--------HHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--ceeCHHH--------HHHH
Confidence 122233468899999999983322212 234444444431 112389999999998643 111 111 2223
Q ss_pred HHhcCCcEEEEcCCCcccccch---HHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~---~~~~~L~~~i~~~~ 208 (352)
....+..++ .+|++++ .++.++++.+.+.+
T Consensus 154 ~~~~~~~~~------~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 154 ADTHSMPLF------ETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHHTTCCEE------ECCSSSGGGGSCHHHHHHHHC---
T ss_pred HHHcCCEEE------EEeCCcCCcccCHHHHHHHHHHHH
Confidence 333343343 4577778 88999988876554
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-16 Score=125.65 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=92.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 458999999999999999999997754111 1111222222233333 44 5788999999322 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+.........+ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 22234468899999999984322222 23344444433222 3899999999986431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 159 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFL------ETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4678889999999998877653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-16 Score=124.38 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.........+... .+..+.+|||||.......
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 90 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD--SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI----------- 90 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS--CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Confidence 347999999999999999999998764211 11122222222222221 2356789999998653211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+........++ ...+...
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 159 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTEE---------ARMFAEN 159 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHHH---------HHHHHHH
Confidence 1123357899999999984322111 2333444333222 23899999999987531011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ .+||.++.++.++++.+.+.+.
T Consensus 160 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 160 NGLLFL------ETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp TTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 343333 4678888999999998877653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=127.66 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 345899999999999999999999876411 11222223333333333 33 467899999954321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
......+.++|++++|+|++++.+... ..++..+...... ....|+++|+||+|+... ....+. ...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence 112234568899999999984322222 2334444433320 012389999999998743 221111 222
Q ss_pred HHH-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.. ..+..++ .+||+++.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 142 WCYSKNNIPYF------ETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HHHHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 222 2222332 5688889999999998877664
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=144.94 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+|+|.+|+|||||+|.|+|......... .+.|.......+.+ ++..+.+|||||+.+..... .........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~v---e~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQV---EKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEE-CCEEEEEEECCccccchhHH---HHHHHHHHh
Confidence 46899999999999999999998753211111 22333333333444 78899999999986532111 111112233
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|+|++++++..+..++..+.. .|+++|+||+|+... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 45678999999999998888777666555432 289999999999865 2221 1111 00 011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
. ...+|++++.++++|++.|.+.+...
T Consensus 359 ~------~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 Q------IVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp C------EEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred c------EEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 2 23578899999999999999988653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=122.75 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=95.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
+.....+|+|+|.+|+|||||+|.+++..... ....|.......+.+ ++. .+.+|||||.... .
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ----EESPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL--------Q- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC----CCCTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH--------H-
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC----CcCCCcceEEEEEEE-CCEEEEEEEEECCCChhh--------h-
Confidence 34456899999999999999999988765411 111122211223333 443 4567999996541 1
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLK 170 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~ 170 (352)
.+..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+.......+ .+ ...
T Consensus 82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~--------~~~ 145 (184)
T 3ihw_A 82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDS--------RAR 145 (184)
T ss_dssp -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHH--------HHH
T ss_pred -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHH--------HHH
Confidence 2235799999999984333233 234444443321 12238999999999852200111 11 123
Q ss_pred HHHHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+....+ ..++ .+||+++.++.++++.+.+.+..
T Consensus 146 ~~~~~~~~~~~~------e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 146 KLSTDLKRCTYY------ETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHTTTCEEE------EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 3444444 3333 46888899999999988776543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=120.22 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++.......+..+ .+. ....+.+ ++. .+.+|||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~-~~~--~~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDV--YERTLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSS-SSE--EEEEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccc-cce--eEEEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 45899999999999999999999876522222211 121 1222333 433 67899999965421 011
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++-+-... .++..+..... ....|+++|+||+|+........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence 112344678999999999843222222 23333333211 1123899999999997541111111 112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 140 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 140 VFDCKFI------ETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHTSEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 2233333 5688889999999998877653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-16 Score=123.91 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||++.+++.... .....|.... ...+.+ ++. .+.+|||||.....
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 67 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD----------- 67 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC----SSCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC----CCcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------
Confidence 3479999999999999999999866531 1111122111 112223 443 45699999975421
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-h
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~ 167 (352)
......+..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.+.. ... .
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 142 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 142 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHH
Confidence 1223355789999999999843332222 34455554433 2399999999998754 222221110 000 1
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+....+. .++ .+||.++.++.+|++.+.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 143 QGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHHhc
Confidence 12233334343 333 56888899999999999887743
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-17 Score=147.51 Aligned_cols=162 Identities=17% Similarity=0.122 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|||++|+|||||+|.|+|......... .++|.........+ .+..+.+|||||+..... .+...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDT-PGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE---PFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCCccceEEEEEEE-CCceEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence 6899999999999999999998764222222 22344444444444 577899999999864321 134455555555
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
++..+|++++|+|+..+++..+......+.. .+ .|+++|+||+|.... . ..... ++ . .+
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-~~----~pvilv~NK~D~~~~--~---~~~~~----~~----~-lg-- 137 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-TK----KPVVLAVNKLDNTEM--R---ANIYD----FY----S-LG-- 137 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-CC----SCEEEEEECCCC----------CCCS----SG----G-GS--
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCccc--h---hhHHH----HH----H-cC--
Confidence 6678999999999988888877666555543 22 399999999998743 1 00111 11 1 11
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++||.++.++.+|++.+.+.+..
T Consensus 138 ---~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 138 ---FGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ---SCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ---CCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 1123467899999999999999887753
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=127.25 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.|++.... .....|+.... ..+.. ++ ..+.+|||||......
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 88 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP----EVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDR----------- 88 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT-----------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC----CcCCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 479999999999999999999987641 11111221111 12233 43 4678999999765321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~~ 168 (352)
.....+..+|++++|+|++++-+-.. ..++..+..... . .|+++|+||+|+... ....+.+.. ... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 12234578999999999983322222 334555554332 2 289999999999765 333222211 001 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+. .++ .+||+++.++.+|++.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 164 GRAMAVRIQAYDYL------ECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 2223333333 222 5688889999999999988764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.5e-16 Score=120.50 Aligned_cols=159 Identities=17% Similarity=0.166 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|++... ......|...... .+... ....+.+|||||...... +..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~~----- 69 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MRD----- 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC----CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HHH-----
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HHH-----
Confidence 47999999999999999999997654 1111222222222 12221 134678999999765321 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+...
T Consensus 70 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1c1y_A 70 --LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred --HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 12235799999999884322122 234444444322 1123899999999987531011111 2223333
Q ss_pred c-CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
. +..++ ++||.++.++.++++.+.+.+
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEE------EecCCCCCCHHHHHHHHHHHH
Confidence 3 22232 568888999999999887654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=139.11 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=110.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc------ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA------FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
...+|+++|..++|||||+|.|+|... +.. ....++|....+..+.+ ++..+++|||||. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~-e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh-----------~ 84 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPE-SQKRGITIDIGFSAFKL-ENYRITLVDAPGH-----------A 84 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEE-TTEEEEECCCSSH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccc-cccCccEEecceEEEEE-CCEEEEEEECCCh-----------H
Confidence 357999999999999999999998761 111 11123455554555555 6789999999993 3
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
.+...+...+..+|++++|+|+++.........+..+.. ++- |.++++||+|+.+. ..++..... +..
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~ 152 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKS 152 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHH
Confidence 344444455678999999999987777777777776654 343 77999999999865 555554444 555
Q ss_pred HHHhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
++... +.. .....+.||.++.++.+|++.+...++.
T Consensus 153 ~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 153 ILQSTHNLK---NSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHHSSSGG---GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhhhcccc---cceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 55443 110 0122357888999999999999987753
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=126.94 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC--CcccccCCCCCccee--eEeEEEEeeC---CceEEEEeCCCCCCCCCCcHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVG 90 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~ 90 (352)
...+|+|+|.+|+|||||+|.|++. .. ......|+. .....+.+.+ ...+.+|||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------- 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKF----LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------- 84 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTH----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcc----cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH----------
Confidence 4479999999999999999999987 32 111122222 2333344422 3468999999952
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCC-cchhcHHHHhcccCCh
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPK 167 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~-~~~~~l~~~l~~~~~~ 167 (352)
.+.......+.++|++++|+|++++.+-.. ..++..+...... ....|+++|+||+|+.. ......++
T Consensus 85 -~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~-------- 155 (208)
T 2yc2_C 85 -LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM-------- 155 (208)
T ss_dssp -HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH--------
T ss_pred -HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH--------
Confidence 233445556788999999999984333222 2344445443320 01239999999999875 20011111
Q ss_pred hHHHHHHhcCCcEEEEcCCCcccccc-hHHHHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIV 209 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~sa~~-~~~~~~L~~~i~~~~~ 209 (352)
...+....+..++ .+|+.+ +.++.++++.+.+.+.
T Consensus 156 -~~~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 156 -AQDWATTNTLDFF------DVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -HHHHHHHTTCEEE------ECCC-------CHHHHHHHHHHH
T ss_pred -HHHHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHHH
Confidence 2334444443333 467888 8999999998877653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=9.7e-16 Score=120.17 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|.+|+|||||+|.|++..... ....+.... ...+.. ++ ..+.+|||||..... .+..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~~---- 69 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD----ECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----AMRD---- 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----HHHH----
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc----ccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----HHHH----
Confidence 3689999999999999999999775411 111122111 122223 33 356889999965421 1111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
..+..+|++++|+++++..+... ..++..+..... ....|+++|+||+|+... ....+. ...+..
T Consensus 70 ---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~ 135 (166)
T 2ce2_X 70 ---QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAAR--TVESRQ--------AQDLAR 135 (166)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CSCHHH--------HHHHHH
T ss_pred ---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhc--ccCHHH--------HHHHHH
Confidence 12235799999999873322222 234444444332 112389999999998754 222222 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 136 SYGIPYI------ETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHTCCEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4677888999999999887653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=122.51 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=95.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+.. ...+.+|||||.......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI----------- 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-----------
Confidence 35799999999999999999999865411 1111122222233333311 346789999995442211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+-.. ..++..+..... . .|+++|+||+|+........++ ...+...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 138 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNEE---------AEGLAKR 138 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHHH---------HHHHHHH
Confidence 1123357899999999984322211 234444444332 2 2899999999987531011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+|+.++.++.++++.+.+.+
T Consensus 139 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 139 LKLRFY------RTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHHH
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHHHHH
Confidence 344333 467888899999999887765
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=122.15 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.|++...... ...+....... ... ++ ..+.+|||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-------~~~~- 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTVEDTYRQVISC-DKSICTLQITDTTGSHQFP-------AMQR- 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS----CCCCSCEEEEEEEEE-TTEEEEEEEEECCSCSSCH-------HHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCCccccEEEEEEE-CCEEEEEEEEECCCchhhH-------HHHH-
Confidence 47999999999999999999998654211 11111111111 122 32 367899999976421 1111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
..+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+... ..+... ....+..
T Consensus 70 ---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~ 137 (172)
T 2erx_A 70 ---LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALAR 137 (172)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHH
T ss_pred ---HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHH
Confidence 12245799999999983322221 2344445444321112389999999998654 211100 0122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 TWKCAFM------ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred HhCCeEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 3333333 4688889999999999877653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=125.10 Aligned_cols=164 Identities=17% Similarity=0.072 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|..|+|||||++.|++... . .....|+...+ ..+.+ ++ ..+.+|||||......
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~---------- 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-P---EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR---------- 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-C---CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence 447999999999999999999997653 1 11112221111 22233 33 4678999999765321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-h
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~ 167 (352)
.....+.++|++++|+|++++-+-... .++..+..... . .|+++|+||+|+... ....+.+.. ... .
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE 155 (194)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence 123355789999999999843222222 34555555433 2 399999999999765 222211110 000 1
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+....+. .++ .+||+++.++.++++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 156 QGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 12233333333 333 568888999999999887754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-16 Score=126.25 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=99.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|..|+|||||++.|++... ......|....+. .+.+. ....+.+|||||.... .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-----------D 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG-----------T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC----CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH-----------H
Confidence 3458999999999999999999987654 1221222222222 12221 2346789999995432 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh----cccC-Ch
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHEC-PK 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l----~~~~-~~ 167 (352)
......+.++|++++|+|++++-+-.. ..++..+..... . .|++||.||+|+... ......+ .... ..
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 164 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTD--LSTLMELSHQKQAPISYE 164 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--hhhhhhhcccccCccCHH
Confidence 123345678999999999985433333 345555655432 2 299999999998753 1100000 0000 01
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHH-HHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~~~~ 210 (352)
....+....+. .++ .+||+++.+ +.++++.+...+..
T Consensus 165 ~~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 165 QGCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHhc
Confidence 12334444444 333 468888998 99999998887643
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=127.11 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+.. ...+.+|||||.......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 34799999999999999999999775411 1111222222223333311 356789999996542211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+... ....+. ...+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc--ccCHHH--------HHHHHHH
Confidence 1123357899999999984322221 223333333221 112389999999998643 211111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+|++++.++.++++.+.+.+..
T Consensus 150 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFI------EASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 343333 46788899999999999887754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=124.41 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|..|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||..... .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------H
Confidence 34799999999999999999999765411 11222233333333334 43 468899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++.+.. ...++..+....+... |+++|+||+|+........++ ...+..
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 1112235789999999997332211 2234444444333233 899999999986431111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+|+.++.++.++++.+.+.+
T Consensus 148 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 ELNVMFI------ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3343333 467788899999999887654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-16 Score=126.68 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=90.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||+|.|++.......+ |.......+.+ ++..+.+|||||..... ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 86 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RVW 86 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----C-----------CGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCC-----CCCceeEEEEE-CCEEEEEEECCCcHhhH-----------HHH
Confidence 44799999999999999999999865421111 22222233444 66888999999965421 122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHH--H
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEI--L 173 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~--~ 173 (352)
...+.++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.+.+++.......-... +
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccc
Confidence 334568899999999984333222 223333322111 112399999999998753 11222222221000000000 0
Q ss_pred Hh-cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 174 QL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 174 ~~-~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.. ..... ...++||+++.++.++++.+.+
T Consensus 166 ~~~~~~~~----~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 166 KELNARPL----EVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTCCSCCE----EEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccCceE----EEEEEECCCCCCHHHHHHHHHH
Confidence 00 00111 1235789999999999998764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=128.82 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|.+|||||||+|.|+|...+.. ..+ ++|.......+.. +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~~p-g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-NWP-GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC-SSS-CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc-CCC-CCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 47899999999999999999999764322 222 2333322222221 66789999999886543221 122222222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
. ...+|++++|+|++ .+. ....+...+.. .+. |+++++||+|.... ..+.. ....+....+.
T Consensus 77 ~-~~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-~~~----p~ilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDAT-NLE-RNLYLTTQLIE-TGI----PVTIALNMIDVLDG--QGKKI--------NVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGG-GHH-HHHHHHHHHHH-TCS----CEEEEEECHHHHHH--TTCCC--------CHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCC-chH-hHHHHHHHHHh-cCC----CEEEEEEChhhCCc--CCcHH--------HHHHHHHHcCC
Confidence 1 14789999999998 321 11222222332 232 89999999997533 11110 12233333343
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.++ ++||.++.++.+|++.+.+.+.
T Consensus 139 ~vi------~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVV------ATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEE------EEEccCCCCHHHHHHHHHHHHh
Confidence 333 5788899999999999987654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-15 Score=129.61 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=105.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|+|... ..+.. ...|.......+.. .+..+.++||||+.+...... ..... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~ 239 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASY-PFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQ---A 239 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECC-TTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-CCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHH---H
Confidence 447999999999999999999998763 22111 12233334444444 577889999999876432211 11111 1
Q ss_pred HhcccCCccEEEEEEecCCC--CCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~--~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
+......+|++++|+|+++. ++..+ ..++..+...++ ..|+++|+||+|.... ..+++. ...+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~~---------~~~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKRL---------EKFV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHHH---------HHHH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHHH---------HHHH
Confidence 22223468999999998732 24433 456666666553 1299999999999865 333322 2222
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..+ ..+||.++.|+.+|++.+.+.+..
T Consensus 306 ~~~~~~~------~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 306 KEKGLNP------IKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHTTCCC------EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HhcCCCe------EEEeCCCCcCHHHHHHHHHHHHHH
Confidence 2223222 357888999999999998887643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=126.10 Aligned_cols=165 Identities=9% Similarity=0.010 Sum_probs=94.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.+++..... ...|.......+.+ ++..+.++||||..... ...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 84 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RLW 84 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HHH
Confidence 34799999999999999999999765421 11232233344445 67889999999975421 112
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.+.+.+.... ..-...+..
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 162 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIEG 162 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---CCS
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-ccccccccc
Confidence 334578999999999984433222 223333322111 112389999999998753 1122222222100 000000000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.... ...++||+++.++.++++.+.+
T Consensus 163 -~~~~----~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 163 -QRPV----EVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp -SCCE----EEEECBTTTTBSHHHHHHHHHT
T ss_pred -cceE----EEEEeECCcCCCHHHHHHHHHh
Confidence 0111 1235788999999999998754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-17 Score=148.65 Aligned_cols=162 Identities=18% Similarity=0.123 Sum_probs=99.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|........ ..++|.........+ .+..+.+|||||+.... ..+.+.+.....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~-~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 97 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVED-TPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAE 97 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHHH
Confidence 4699999999999999999999876422212 223344444444444 57789999999987432 222445555555
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++..+|++++|+|....++..+...+.++.. .+ .|+++|+||+|.... . ..... ......+
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~~----~pvilV~NK~D~~~~--~---~~~~e--------~~~lg~~ 159 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-TK----KPVVLAVNKLDNTEM--R---ANIYD--------FYSLGFG 159 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-CC----SCEEEEEECC--------------CC--------SGGGSSS
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-cC----CCEEEEEECccchhh--h---hhHHH--------HHHcCCC
Confidence 56678999999999987888888877777665 23 289999999998643 1 01111 0111011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ ..+||.++.++.+|++.+.+.+.
T Consensus 160 ~~------~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 EP------YPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SE------EECCTTTCTTHHHHHHHHHTTGG
T ss_pred ce------EEeecccccchHHHHHHHHhhcc
Confidence 12 25688889999999998877654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=131.38 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... . ..+..............+ ..+.+|||||........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKN-Y-NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCE-E-ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 458999999999999999999997654111 1 111111111111122122 468899999965432111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++|+|++++.+..+ ..++..+........ |+++|+||+|+... ..+... ....+..
T Consensus 79 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~--~~~~~~-------~~~~~~~ 145 (218)
T 4djt_A 79 --DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNR--QKISKK-------LVMEVLK 145 (218)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS--CEEEEEECTTCC------CCHH-------HHHHHTT
T ss_pred --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccc--cccCHH-------HHHHHHH
Confidence 112357899999999984433222 234455555544333 89999999998754 111100 0112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
..+..++ .+||+++.++.++++.+.+.+.....
T Consensus 146 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 146 GKNYEYF------EISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred HcCCcEE------EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 2233333 46888899999999999998866443
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-17 Score=130.44 Aligned_cols=167 Identities=16% Similarity=0.081 Sum_probs=92.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.........+.+ ++ ..+.+|||||.... ...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------~~~--- 93 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFREN--ISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERF-------RSI--- 93 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTC-------HHH---
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCCccceeEEEEEEE-CCEEEEEEEEECCCCcch-------hhh---
Confidence 458999999999999999999997653111 1111111222222333 33 45789999996542 111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+... ...+. ...........+..
T Consensus 94 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~~~ 167 (199)
T 2p5s_A 94 -AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKLAM 167 (199)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHHHH
T ss_pred -HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--ccccc-ccccCHHHHHHHHH
Confidence 1122346799999999984333222 23444444433222 289999999998632 10000 00000001222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 168 ~~~~~~~------~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 TYGALFC------ETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHTCEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCeEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 3344333 4688889999999998877653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=126.30 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+|+|..|+|||||++.+++... ......|.... ...+.. ++ ..+.||||+|.....
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f----~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~---------- 76 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF----DNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFR---------- 76 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC----C----------CEEEEEEC-SSCEEEEEEECCSCTTTCG----------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC----CCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhh----------
Confidence 457999999999999999999986543 11122232222 222223 33 356799999965421
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....++.+++++++|+|++++-+-.. ..++..+....+..+ |++||.||+|+.....-..++ ...+
T Consensus 77 -~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~ 144 (216)
T 4dkx_A 77 -SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERK 144 (216)
T ss_dssp -GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred -hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhH
Confidence 122334578999999999984333222 345566665555554 899999999986531011221 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+..|+ .+||+++.++.++++.|.+.+
T Consensus 145 a~~~~~~~~------e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 145 AKELNVMFI------ETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHHTCEEE------EEBTTTTBSHHHHHHHHHHHC
T ss_pred HHHhCCeeE------EEeCCCCcCHHHHHHHHHHHH
Confidence 333344443 578999999999999887665
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-15 Score=120.15 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=94.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
.+.....+|+|+|..|+|||||+|.+++..... ++.+. ..........+ .....+.+|||||........+..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-- 89 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFL-ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY-- 89 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGC-CCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH--
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeee-ccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc--
Confidence 344566899999999999999999999864311 11111 11111111112 134678999999976532211100
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHH---HHhcccCChh
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE---DFLGHECPKP 168 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~---~~l~~~~~~~ 168 (352)
...+.++|++++|+|+++++......+..++..........|+++|.||+|+... .... ..+.. ..
T Consensus 90 ------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~---~~ 158 (196)
T 3llu_A 90 ------EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQ---RA 158 (196)
T ss_dssp ------HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHH---HH
T ss_pred ------ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHH---HH
Confidence 1223478999999999965434444444555544211112399999999998764 2111 11111 00
Q ss_pred HHHHHH----hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 169 LKEILQ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 169 ~~~~~~----~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...+.. ..+..++ .+||++ .++.++++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~------e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFY------LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHTTCTTSCEEEE------EECTTS-THHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCcceE------EEEech-hhHHHHHHHHHHH
Confidence 122222 1122222 568888 9999999887654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=124.32 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee--EeEEEEeeC-----------CceEEEEeCCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKD-----------GQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~lvDtpG~~~~~~ 84 (352)
...+|+|+|..|+|||||+|.|++... ......|... ....+.+.. ...+.||||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----- 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF----NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----- 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC----CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC----CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence 347999999999999999999997654 1111112221 122223322 356899999992
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcH-HHHh
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTL-EDFL 161 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l-~~~l 161 (352)
..+.......+..+|++++|+|+++..+... ...++..+.... ...|+++|+||+|+... ..+ .+.
T Consensus 95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~- 163 (217)
T 2f7s_A 95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNERQ- 163 (217)
T ss_dssp ------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCHHH-
T ss_pred ------HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccc--cccCHHH-
Confidence 3333334445578999999999983222111 122333322111 22389999999998653 111 111
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+..++ .+|++++.++.++++.+.+.+.
T Consensus 164 -------~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 164 -------ARELADKYGIPYF------ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp -------HHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHCCCcEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 2233344444443 4678888999999998877653
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=135.21 Aligned_cols=170 Identities=18% Similarity=0.120 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|||||||+|.|++...... .....|.......+.+.++..+.++||||+.+.......+...+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH---
Confidence 689999999999999999997653211 111123333344455534478999999997542211122233333322
Q ss_pred cCCccEEEEEEecCC---CCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 101 KDGIHAFLVVFSVTN---RFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~---~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..++++++|+|+++ +-+..+. .++..+..........|+++|+||+|+... .. . +..+...+
T Consensus 235 -~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e---~--------~~~l~~~l 300 (342)
T 1lnz_A 235 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AE---N--------LEAFKEKL 300 (342)
T ss_dssp -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HH---H--------HHHHHHHC
T ss_pred -HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HH---H--------HHHHHHHh
Confidence 35799999999983 2222332 334444443211123499999999998754 21 1 12222332
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
... .....+||.++.++.+|++.|.+.+.....
T Consensus 301 ~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 301 TDD----YPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred hcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 221 234567899999999999999999876443
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=121.69 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|+|||||+|.|++... .....+ +.+.... .+.+ . .+.++||||+.+....+....+.+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~-~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRP-GVTRKII--EIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSST-TCTTSCE--EEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCC-CccceeE--EEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999998763 222222 2232222 2222 2 678999999876544333222233222221
Q ss_pred c----cCCccEEEEEEecCCCCCHHHHHHH---------HHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC
Q 018636 100 A----KDGIHAFLVVFSVTNRFSQEEETAV---------HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (352)
Q Consensus 100 ~----~~~~~~~l~v~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~ 166 (352)
. ...++++++|.+.. .+......+. ..+....... .|+++|+||+|+... . .+..
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~~----- 142 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEVI----- 142 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHHH-----
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHHH-----
Confidence 1 34566777777765 2211101111 1112111112 289999999999865 2 1111
Q ss_pred hhHHHHHHhcCCcEEE-EcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 167 KPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+....+..+.. .....++||+++.++.++++.+.+.+..
T Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 143 ---NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp ---HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 2222222221100 0011257888999999999999887755
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=126.40 Aligned_cols=162 Identities=19% Similarity=0.126 Sum_probs=95.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA----------- 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhh-----------
Confidence 447999999999999999999998764111 1112222222333334 44 4778999999654321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+..+ ..++..+....... .|++||+||+|+........++ ...+..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 146 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEE---------SKTFAQ 146 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHH---------HHHHHH
Confidence 12334578999999999984333222 23444444433222 3899999999987431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 147 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 147 ENQLLFT------ETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HTTCEEE------ECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3343333 46788899999999998877643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=123.24 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC------CCcceeeEeEEE---Eee-CCceEEEEeCCCCCCCCCCcH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTKTCEMKTT---VLK-DGQVVNVIDTPGLFDLSAGSE 87 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~------~~~t~~~~~~~~---~~~-~~~~~~lvDtpG~~~~~~~~~ 87 (352)
...+|+|+|.+|+|||||+|.|.|.......+.. ...|........ ... ....+.+|||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 4579999999999999999999876542111100 111222211111 110 13367899999965421
Q ss_pred HHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhh----cccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
......+.++|++++|+|++++.+......+..+...+ ......|+++|.||+|+... ...++
T Consensus 89 -------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---- 155 (198)
T 3t1o_A 89 -------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM---- 155 (198)
T ss_dssp -------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH----
T ss_pred -------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH----
Confidence 11222456899999999998433333333333332221 11122399999999998754 22222
Q ss_pred cCChhHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...++...+. .++ .+||+++.++.++++.+.+.+.
T Consensus 156 -----~~~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 156 -----VRAVVDPEGKFPVL------EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----HHHHHCTTCCSCEE------ECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCceEE------EEecCCCcCHHHHHHHHHHHHH
Confidence 2223333333 333 5788999999999998877664
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=119.32 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++... ......|..... ..+.+. ....+.+|||||..... .
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 458999999999999999999997654 111112222111 122221 13467899999964321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc---ccCC-hhH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HECP-KPL 169 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~---~~~~-~~~ 169 (352)
.....+.++|++++|+|++++.+-.. ..++..+..... . .|+++|.||+|+.... ..+.+... .... ...
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence 12335578999999999984333222 234444544332 2 3999999999987431 11111110 0000 112
Q ss_pred HHHHHhcCC-cEEEEcCCCccccc-chHHHHHHHHHHHHHH
Q 018636 170 KEILQLCDN-RCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (352)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~sa~-~~~~~~~L~~~i~~~~ 208 (352)
..+....+. .++ .+||+ ++.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~------e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHTCSEEE------ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE------EeeecCCCcCHHHHHHHHHHHH
Confidence 334434342 333 56887 6899999999887764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=128.16 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccC---CCCCc----------------------ceee-------------
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGV----------------------TKTC------------- 58 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~---~~~~~----------------------t~~~------------- 58 (352)
....+|+|+|.+|+|||||+|+|+|....+... +..+. ++..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999987532111 00000 0000
Q ss_pred -----------EeEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhcccCCccEEE-EEEecCCCCCHHHH-H
Q 018636 59 -----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEE-T 123 (352)
Q Consensus 59 -----------~~~~~~~~~~~~~~lvDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~~~~~~~~~~~~-~ 123 (352)
....+..++...+.+|||||+..... ....+...+......++...+.++ +|+|++..++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011111246889999999976431 011112233333333444566554 78898766655543 2
Q ss_pred HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHH
Q 018636 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSL 203 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~ 203 (352)
++..+.. .+ .|+++|+||+|+.... ....+.+.. .+..+...+. .....||.++.++.+|++.
T Consensus 184 ~~~~~~~-~~----~~~i~V~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~---~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 184 IAKEVDP-QG----QRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYI---GVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp HHHHHCT-TC----SSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEE---ECCCCCCBCTTSCBCHHHH
T ss_pred HHHHhCC-CC----CeEEEEEEccccCCCC-chHHHHHhC--------CcCcCCCCcE---EEECCChhhccccccHHHH
Confidence 3333322 12 3899999999997541 112222221 0000111122 3456799999999999988
Q ss_pred HHHH
Q 018636 204 VNSV 207 (352)
Q Consensus 204 i~~~ 207 (352)
+...
T Consensus 247 l~~~ 250 (299)
T 2aka_B 247 LAAE 250 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=119.19 Aligned_cols=162 Identities=22% Similarity=0.151 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||...... .+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~--- 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA--HEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQ--- 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc--ccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhh---
Confidence 6899999999999999999987653111 1111222222233333 43 4567999999765211 011
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHLAGTL 139 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHH---------HHHHHHHc
Confidence 111235799999999984222111 223333333222 1123999999999987431111111 22233444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..++ .+||+++.++.++++.+.+.+..
T Consensus 140 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHI------ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EecCccCCCHHHHHHHHHHHHHh
Confidence 44443 56888899999999998876643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=123.41 Aligned_cols=165 Identities=16% Similarity=0.040 Sum_probs=96.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+.+ ...+.+|||||.......
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQ--YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM---------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHH--HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCC--CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch----------
Confidence 458999999999999999999997653111 001111222233344422 257899999996543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+.++|++++|+|++++.+-.. ..++..+..........| +++|+||+|+........+ . ...+.
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~-~--------~~~~~ 142 (178)
T 2hxs_A 73 -LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE-K--------HLRFC 142 (178)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH-H--------HHHHH
T ss_pred -hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH-H--------HHHHH
Confidence 1122458899999999984332222 234444444321100114 7899999998643101111 1 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..++ .+||.++.++.++++.+.+.+..
T Consensus 143 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 143 QENGFSSH------FVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHTCEEE------EECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 33333333 46788899999999999887643
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=124.91 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||++.+++... . .....|+...+. .+... ....+.+|||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-P---TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 348999999999999999999987653 1 111112111111 11110 12345699999965432 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHH-h--cccCChhHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF-L--GHECPKPLK 170 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~-l--~~~~~~~~~ 170 (352)
.....+.++|++++|+|++++.+-... .++..+..... . .|+++|+||+|+... ...... . .........
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 223345789999999999843332222 34555554433 2 389999999998654 221000 0 000000122
Q ss_pred HHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+....+. .++ .+||+++.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33333343 333 568888999999999887765
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=121.08 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++... ......|..... ..+.+. ....+.+|||||.....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------- 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-----------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-----------
Confidence 4458999999999999999999998654 111112222211 122221 13467899999964321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP 168 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~ 168 (352)
......+.++|++++|+|++++.+-.. ..++..+..... . .|+++|.||+|+.... ..+.++... ... ..
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHH
Confidence 112335578999999999984333222 234444544332 2 3899999999987431 111111100 000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCccccc-chHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~-~~~~~~~L~~~i~~~~ 208 (352)
...+....+. .++ .+||+ ++.++.++++.+.+.+
T Consensus 167 ~~~~~~~~~~~~~~------e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 167 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE------EeeeccCCcCHHHHHHHHHHHH
Confidence 2334434342 333 46787 6889999999887754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=119.84 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.+++.......+ |.... ...+.+ ++ ..+.+|||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~-----t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~--------~---- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEK-----TESEQYKKEMLV-DGQTHLVLIREEAGAPD--------A---- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSS-----CSSSEEEEEEEE-TTEEEEEEEEECSSSCC--------H----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCC-----CcceeEEEEEEE-CCEEEEEEEEECCCCch--------h----
Confidence 45899999999999999999999765422111 21111 222233 43 3568899999653 0
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc-cccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~ 171 (352)
..+.++|++++|+|++++-+-... .++.++...... ....|+++|.||+|+... ......+. ...
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~--------~~~ 135 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR--------ARA 135 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH--------HHH
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH--------HHH
Confidence 122468999999999844333322 233344443221 012389999999998421 00111111 222
Q ss_pred HHHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+....+ ..++ .+||+++.++.++++.+.+.+
T Consensus 136 ~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 136 LXADMKRCSYY------ETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp HHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhhcCCeEE------EEeccccCCHHHHHHHHHHHH
Confidence 322222 2222 568888999999999887665
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=128.41 Aligned_cols=171 Identities=14% Similarity=0.069 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|+|||||+|.|+|...... .....|.+.....+.+ ++..+.++||||+.... .. .+.+.+...+ ..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l-p~-~lve~f~~tl-~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI-PP-QIVDAFFVTL-SE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC-CG-GGHHHHHHHH-HG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC-CH-HHHHHHHHHH-HH
Confidence 499999999999999999998864211 1112233333344555 67888999999985421 11 1223333332 24
Q ss_pred cCCccEEEEEEecCCCC--CHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-
Q 018636 101 KDGIHAFLVVFSVTNRF--SQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (352)
+..+|++++|+|+++.. ...... +...+..+.... .|+++|.||+|..+. . ....+.. ...+....
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l~ 324 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKING--D-LYKKLDL-----VEKLSKELY 324 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHHC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHhc
Confidence 56789999999987433 111122 223333321122 389999999998764 2 1111111 11122222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..... ..++|+.++.++.+|++.|.+.+...
T Consensus 325 ~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 325 SPIFD----VIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp SCEEE----EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCc----EEEEECCCCcCHHHHHHHHHHHhccc
Confidence 11111 13678899999999999999887653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=119.29 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=96.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~ 93 (352)
..+.+|+|+|++|||||||+|.|+|... ....+..|. +.... .+.+ ++ .+.++||||+........ ......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~-~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGR-TQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcc-ceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 4568999999999999999999998762 111133222 11111 1222 22 677999999865321111 111112
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........+++++++++++...+..+.....++.. .+. |++++.||+|..+. ......+.. ...++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~----~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SNI----AVLVLLTKADKLAS--GARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEecccCCCc--hhHHHHHHH-----HHHHH
Confidence 2222222357899999999986666555444444432 232 78899999998764 222211222 33344
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
........ ..++|+.++.++.++++.+.+.+..
T Consensus 167 ~~~~~~~~----~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQ----VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEE----EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCc----eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 33221111 2356888899999999998887644
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=140.25 Aligned_cols=166 Identities=15% Similarity=0.201 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-----------------------------------------
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT----------------------------------------- 57 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~----------------------------------------- 57 (352)
-.+|+|+|..++|||||+|+|+|...++.+.. .+|..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 36999999999999999999999876544322 11210
Q ss_pred ----------eEeEEEEeeCCceEEEEeCCCCCCCCCC--c----HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH
Q 018636 58 ----------CEMKTTVLKDGQVVNVIDTPGLFDLSAG--S----EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE 121 (352)
Q Consensus 58 ----------~~~~~~~~~~~~~~~lvDtpG~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~ 121 (352)
.....+..++...++||||||+...... . ..+...+..++. ..+|++++|+|++..+...+
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSCH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchhH
Confidence 0011122334557899999999874321 1 223333333333 57899999999986666666
Q ss_pred H-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 122 E-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 122 ~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
. ..+..+... +. |+++|+||+|..... ....+.+.. .....+ .-|....+.||.++.++.+|
T Consensus 206 ~l~ll~~L~~~-g~----pvIlVlNKiDlv~~~-~~~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 206 ALKIAKEVDPQ-GQ----RTIGVITKLDLMDEG-TDARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp HHHHHHHHCTT-CS----SEEEEEECTTSSCTT-CCSHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEH
T ss_pred HHHHHHHHHhc-CC----CEEEEEeCcccCCcc-hhhHHHHHH----------Hhhhhh-ccCCceEEecccccccchhH
Confidence 5 455544432 32 899999999998651 111111111 000000 11334667899999999999
Q ss_pred HHHHHH
Q 018636 201 LSLVNS 206 (352)
Q Consensus 201 ~~~i~~ 206 (352)
++.+.+
T Consensus 269 ~eaI~~ 274 (772)
T 3zvr_A 269 TAALAA 274 (772)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=119.24 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||+|.|++..... ....|....+. .+.+ ++ ..+.+|||||... ....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~~--- 92 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW----EYDPTLESTYRHQATI-DDEVVSMEILDTAGQED-----TIQR--- 92 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-----CHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCCCCceEEEEEEE-CCEEEEEEEEECCCCCc-----ccch---
Confidence 456899999999999999999999775411 11112222221 1223 33 4678999999765 1111
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
. ..+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+
T Consensus 93 ~----~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~ 158 (196)
T 2atv_A 93 E----GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKL 158 (196)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred h----hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHH---------HHHH
Confidence 1 12235799999999983222222 233444444322 1123899999999987531011111 1222
Q ss_pred HHhcCCcEEEEcCCCcccccchH-HHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~~ 209 (352)
....+..++ .+|+.++. ++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 159 ATELACAFY------ECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp HHHHTSEEE------ECCTTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EECCCcCCcCHHHHHHHHHHHHH
Confidence 233333333 46778888 99999998877653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=134.78 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=101.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCccccc-----------------------------CCCCCcceeeEeEEEEe
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVL 65 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (352)
+.....+|+++|+.|+|||||+|.|++....-.. ....++|.......+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3345689999999999999999999654210000 00123455555555555
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC-------HHHHHHHHHHHHhhcccccc
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFD 138 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~ 138 (352)
.+..+++|||||.. .+...+...+..+|++++|+|++.... ...+..+..+.. ++..
T Consensus 93 -~~~~~~iiDTPGh~-----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~--- 156 (439)
T 3j2k_7 93 -EKKHFTILDAPGHK-----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVK--- 156 (439)
T ss_pred -CCeEEEEEECCChH-----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCC---
Confidence 67899999999943 233344444568999999999985443 344555554444 3431
Q ss_pred eEEEEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHH
Q 018636 139 YMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (352)
Q Consensus 139 ~~ilv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~ 202 (352)
++++++||+|+... ....+++.... +..++...+-.....-...+.||.++.++.++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 48999999998643 11223333333 4445444332100001124678889999988554
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=121.27 Aligned_cols=169 Identities=21% Similarity=0.147 Sum_probs=94.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~ 88 (352)
...+.....+|+|+|.+|+|||||+|.|+|... +...+. .+.......+.+ ++. .+.+|||+|.....
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~----- 86 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE---NPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG----- 86 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT---SCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-----
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC---cccceEEEEEEE-CCEEEEEEEEecCCCccch-----
Confidence 333445668999999999999999999986532 111111 122222222333 443 56788999965421
Q ss_pred HHHHHHHHHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCCh
Q 018636 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~ 167 (352)
..+.. ..+..+|++++|+|++++-+-. ...++..+..... ....|+++|.||+|+........++
T Consensus 87 --~~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~-------- 152 (195)
T 3cbq_A 87 --GWLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE-------- 152 (195)
T ss_dssp --HHHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH--------
T ss_pred --hhhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH--------
Confidence 11111 1234679999999998432211 1233333433221 1123899999999987541111221
Q ss_pred hHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+....+..++ .+||+++.++.++++.+.+.+..
T Consensus 153 -~~~~a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 153 -GRHLAGTLSCKHI------ETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp -HHHHHHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHH
Confidence 2223333343333 56888899999999998877654
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=138.71 Aligned_cols=158 Identities=21% Similarity=0.272 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCC-CCCCCcHHHH-HHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVG-KEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~-~~~~~~~~~~-~~~~~~~ 97 (352)
.+|+|+|.+|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+. ......+... ...
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~-gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~---- 317 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-GTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERT---- 317 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS-CCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHH----
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCC-CeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHH----
Confidence 79999999999999999999987532111111 2233443444455 78899999999987 5432111100 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|+++..+..+...++.+ . . .|+++|+||+|+... ...++ +..... ..
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~~ 378 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-TD 378 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-CS
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-CC
Confidence 1123478999999999867776665554433 2 1 289999999998743 22221 222211 11
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+ ..+||+++.++++|++.|.+.+
T Consensus 379 ~~~------i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 379 RHM------VKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TTE------EEEEGGGTCCHHHHHHHHHHHT
T ss_pred CcE------EEEECCCCCCHHHHHHHHHHHH
Confidence 122 3578999999999999988864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.4e-16 Score=137.40 Aligned_cols=167 Identities=19% Similarity=0.144 Sum_probs=105.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
+.....+|+|+|..|+|||||+|.|++......... .+.|.......+.+.....+.+|||||+.+............
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~- 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDY-AGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA- 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCC-CCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH-
Confidence 344568999999999999999999998765222222 223444445555553334899999999987543221111222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..+|++++|+|+ .....+..++..+... +. |+++|+||+|+... ...+ . ...+..
T Consensus 108 ---~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~~----piIvV~NK~Dl~~~--~~~~-~--------~~~l~~ 166 (423)
T 3qq5_A 108 ---RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-EI----PFVVVVNKIDVLGE--KAEE-L--------KGLYES 166 (423)
T ss_dssp ---HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-TC----CEEEECCCCTTTTC--CCTH-H--------HHHSSC
T ss_pred ---HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-CC----CEEEEEeCcCCCCc--cHHH-H--------HHHHHH
Confidence 2234578999999998 5566777787877765 32 89999999999866 2211 1 111111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+. ....+|++++.++.+|++.+.+.+..
T Consensus 167 ~~g~------~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 167 RYEA------KVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTTC------CCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HcCC------CEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 1121 34578999999999999999998844
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=128.88 Aligned_cols=161 Identities=16% Similarity=0.053 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.++... .....++.+ .+.. ...+... .+..+.+|||||.......
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------- 80 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-VEVH--PLVFHTNRGPIKFNVWDTAGQEKFGGL--------- 80 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT-EEEE--EEEEEETTEEEEEEEEEECSGGGTSCC---------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc-eeEE--EEEEEECCEEEEEEEEeCCChHHHhHH---------
Confidence 455899999999999999999955332 211112111 1221 1122221 2356789999995432211
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+.++|++++|+|++++.+... ..++..+...+. . .|+++|+||+|+... ....+ ... +.
T Consensus 81 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~-~~~--------~~ 144 (221)
T 3gj0_A 81 --RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKAK-SIV--------FH 144 (221)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCGG-GCC--------HH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccHH-HHH--------HH
Confidence 1123357899999999984333222 234444444432 2 289999999998755 22111 111 22
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
...+..++ .+|++++.++.++++.+.+.+...
T Consensus 145 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 145 RKKNLQYY------DISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 22233343 468889999999999998887653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=119.49 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEE--e----eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTV--L----KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~--~----~~~~~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
.+|+|+|++|||||||+|.|++.. .+.. . ...|....+.... + .....+.+|||+|.. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~-~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG-M--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------E 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH-----------H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC-C--cceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------H
Confidence 689999999999999999999863 2111 1 1112222221111 1 124578899999942 2
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCH--HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQ--EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
+.......+.+.+++++|+|++++.+. .-..++..+..... . .|+++|.||+|+... ..+.+.... ...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~ 139 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITK 139 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHH
Confidence 222222233467899999998843221 11233343333322 2 289999999998754 333221111 011
Q ss_pred HHHHhcCCcEEEEcCCCcccccchH-HHHHHHHHHHHHHHh
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~~~ 210 (352)
.+....+.... .....+||+++. ++.+|++.|.+.+..
T Consensus 140 ~~~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 140 ELLNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HTTTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 12112222200 011246777884 899999988776643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=127.44 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE---------------------------------------
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--------------------------------------- 59 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--------------------------------------- 59 (352)
..+|+|+|.+|+|||||+|+|+|....+... +.+|....
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~--~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS--GIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCS--SSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCC--CcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3699999999999999999999987532211 11110000
Q ss_pred ------------eEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccc-CCccEEEEEEecCCCCCHHHHHH
Q 018636 60 ------------MKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETA 124 (352)
Q Consensus 60 ------------~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~ 124 (352)
...+..+++..++||||||+...... ...+.+.+...+..++ ...+++++|++++..+...+..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 00111122567999999999764321 1111222333333232 3446677777776555544432
Q ss_pred HHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHH
Q 018636 125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
.++..+... ..|+++|+||+|+.... ....+.+.. . .. .....++ .....||.++.++.+|++.+
T Consensus 188 -~i~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~-~------~~-~l~~~~~---~v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 188 -KVAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLEN-K------LL-PLRRGYI---GVVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp -HHHHHHCTT--CTTEEEEEECGGGSCTT-CCCHHHHTT-C------SS-CCTTCEE---ECCCCCHHHHHTTCCHHHHH
T ss_pred -HHHHHhCcC--CCceEEEeccccccCcc-hhHHHHHhC-C------cc-cccCCce---EEEeCCcccccccccHHHHH
Confidence 233332221 23899999999997541 112222221 0 00 0011222 34567899999999999887
Q ss_pred HH
Q 018636 205 NS 206 (352)
Q Consensus 205 ~~ 206 (352)
.+
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=122.36 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||++.+++... . .....|....+ ..+.+ ++ ..+.+|||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-P---TDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C---SSCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C---ccCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 458999999999999999999987653 1 11111221111 12223 33 4778999999765321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc-ccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG-HECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~-~~~~~~~~~ 171 (352)
.....+.++|++++|+|++++-+-... .++..+..... . .|++||+||+|+... ........ .........
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 122345789999999999843222222 34455544332 2 389999999998654 22100000 000001223
Q ss_pred HHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....+. .++ .+||.++.++.++++.+.+.+..
T Consensus 147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhh
Confidence 3333343 333 56888899999999998887654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=129.17 Aligned_cols=167 Identities=16% Similarity=0.223 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEee--------------C--------CceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~lv 74 (352)
...+|+++|+.++|||||++.|+|....... ....++|....+....+. + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4489999999999999999999976431110 111223443332221110 1 1578999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
|||| ...+...+......+|++++|+|+++.. .......+..+.. ++. .|+++++||+|+...
T Consensus 87 DtPG-----------h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~- 150 (408)
T 1s0u_A 87 DSPG-----------HETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE- 150 (408)
T ss_dssp ECSS-----------HHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT-
T ss_pred ECCC-----------HHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH-
Confidence 9999 3344444555556889999999998665 5666666665543 342 279999999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
......... +..++.... ..+ ...+.||.++.++.+|++.+...++.
T Consensus 151 -~~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 -KQAEENYEQ-----IKEFVKGTIAENA----PIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp -TTTTTHHHH-----HHHHHTTSTTTTC----CEEEC------CHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHhhcCCCCC----eEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 322211222 333333211 111 12357889999999999999886643
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=130.37 Aligned_cols=168 Identities=13% Similarity=0.183 Sum_probs=104.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEee--------------C--------CceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~lv 74 (352)
...+|+++|+.++|||||++.|+|....... ....++|....+....+. . ...+++|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4479999999999999999999976421110 111223443333222210 0 1578999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
||||. ..+...+......+|++++|+|+++.. .......+..+..+ +.. |+++++||+|+...
T Consensus 89 DtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~---~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 89 DAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK- 152 (410)
T ss_dssp ECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH-
T ss_pred ECCCh-----------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCC---cEEEEEECccCCCH-
Confidence 99993 334444444455789999999998655 56666666655543 422 79999999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+.... +..++....... .+..+.||.++.++.+|++.|...++.
T Consensus 153 -~~~~~~~~~-----i~~~l~~~~~~~---~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 -EKALENYRQ-----IKEFIEGTVAEN---APIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTT---CCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHHhcCcCC---CeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 443333333 444443211100 012356888999999999999886653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=124.81 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=78.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH-HHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~-~~~~ 97 (352)
..+|+|+|.+|+|||||+|.+++........ ....|.........+.++..+.+|||||.... ...+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~-~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR-RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGG-GCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccc-CcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHH
Confidence 4799999999999999999998873211111 12234444444444435678899999995321 1111 1222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...+.++|++++|+|+++.-+..+. .+..++..+.......|+++|+||+|+...
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 3344689999999999855444443 233334333211112399999999999863
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=134.32 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=102.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-------------CCCCCcceeeEeEEEEe----eCCceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~----~~~~~~~lvDtpG~~ 80 (352)
...+|+++|..|+|||||+|+|+|....... ......+.........+ .....+.+|||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4589999999999999999999985431100 00000000000000000 012578899999943
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
+ +.......+..+|++++|+|+++.. .......+..+..+ +.. |+++++||+|+.+. ..+.+
T Consensus 87 ~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~--~~~~~ 149 (403)
T 3sjy_A 87 V-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK--EEALS 149 (403)
T ss_dssp G-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--HHHHH
T ss_pred H-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch--HHHHH
Confidence 3 2222233345789999999999665 55566666655543 322 89999999999866 55544
Q ss_pred HhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.... +...+....... ....+.||.++.++.+|++.+...+..
T Consensus 150 ~~~~-----i~~~l~~~~~~~---~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 QYRQ-----IKQFTKGTWAEN---VPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHH-----HHHHHTTSTTTT---CCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHH-----HHHHHHhhCCCC---CEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 4444 444443322110 012367889999999999999986643
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=116.30 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|..|+|||||+|.+++... ......|+...+ ..... ++ ..+.+|||||...... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF----ISEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN--------C 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC--------T
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh--------H
Confidence 3458999999999999999999997653 111222322222 12222 33 4567899999754321 1
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
. ..+..+|++++|+|++++-+-.. ..++..+...... ....|+++|.||+|+........++ ...
T Consensus 86 ~----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 152 (187)
T 3c5c_A 86 E----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVA 152 (187)
T ss_dssp H----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHH
T ss_pred H----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHH
Confidence 1 12357899999999983322222 2344444443210 0123899999999986431011111 222
Q ss_pred HHHhcCCcEEEEcCCCcccc-cchHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa-~~~~~~~~L~~~i~~~~ 208 (352)
+....+..++ .+|| .++.++.++++.+.+.+
T Consensus 153 ~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 153 LAGRFGCLFF------EVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEE------EEeecCccccHHHHHHHHHHHH
Confidence 3333343333 4677 78899999999887765
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-17 Score=131.69 Aligned_cols=161 Identities=20% Similarity=0.167 Sum_probs=89.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||.......
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 98 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------- 98 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCH--HHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH----------
Confidence 347999999999999999999998654111 0111222333333344 44 46889999996543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|+++.-+-.. ..++..+....... .|+++|+||+|+... ..+.. . ....+..
T Consensus 99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~v~~--~-----~~~~~~~ 166 (199)
T 3l0i_B 99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVDY--T-----TAKEFAD 166 (199)
T ss_dssp -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC----CCCCS--C-----C-CHHHH
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc--ccCCH--H-----HHHHHHH
Confidence 2234468899999999984333222 23334443332222 389999999998744 11110 0 0122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+.. ...+|++++.++.++++.+.+.+.
T Consensus 167 ~~~~~------~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 SLGIP------FLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TTTCC------BCCCCC---HHHHHHHHHHTTTTT
T ss_pred HcCCe------EEEEECCCCCCHHHHHHHHHHHHH
Confidence 32322 346789999999999998876543
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=137.59 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc----------------cc----CCCCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|++|+|||||+|.|++..... .. ....++|.......+.+ .+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 34799999999999999999996211000 00 00012233333444455 68889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|+.+.. .. ...++..+|++++|+|++...+......+..+... +. |+++++||+|+...
T Consensus 91 G~~df~-------~~----~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~i----PiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFT-------ED----TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-HT----PIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCC-------HH----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-TC----CEEEEEECTTSCCS
T ss_pred CchhHH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEeCCCCccc
Confidence 987642 11 22344578999999999977888877777766543 32 89999999999754
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=127.45 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc------ccc---cC-----CCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA---SA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~~~---~~-----~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..+|+++|+.|+|||||++.|++... +.. .. ...++|.......+.. .+..+.+|||||.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~----- 76 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGH----- 76 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSH-----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCCh-----
Confidence 47999999999999999999987421 000 00 0122344433333333 5688999999993
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHhcc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+...+...+..+|++++|+|+++.........+..+.. .+- | +++++||+|+... ...++.....
T Consensus 77 ------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~-~~~~~~~~~~ 144 (397)
T 1d2e_A 77 ------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD-SEMVELVELE 144 (397)
T ss_dssp ------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred ------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC-HHHHHHHHHH
Confidence 3344445556678999999999997777777777765554 343 5 6889999999753 1333333233
Q ss_pred cCChhHHHHHHhcCC---cEEEEcCCCcccccchH---------H-HHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIV 209 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~---------~-~~~L~~~i~~~~~ 209 (352)
+..++...+. .. +..+.||.++. + +.+|++.+...++
T Consensus 145 -----~~~~l~~~~~~~~~~----~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 145 -----IRELLTEFGYKGEET----PIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp -----HHHHHHHTTSCTTTS----CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHcCCCcccC----cEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 4555554431 11 11246776655 3 8889988887665
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=134.76 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc-ccc----------------------------cCCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA----------------------------SAGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|..|+|||||+|.|++... +.. .....++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 457999999999999999999975411 000 000113454444555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.||||||..+ +......++..+|++++|+|+++. +.......+..+.. ++.. +++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~---~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCC---CEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCC---cEE
Confidence 8899999999743 222233345689999999999844 34455555555444 3421 699
Q ss_pred EEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHHHHH
Q 018636 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 142 lv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+++||+|+.......+++.... +..++...+. ...+ .++||.++.++.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~----i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEE----EECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceE----EEEeeecCCCccc
Confidence 9999999876322444444443 5555544332 1211 2567777777764
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.4e-15 Score=132.40 Aligned_cols=159 Identities=12% Similarity=0.104 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc--ccc------------cCC-----------------CCCcceeeEeEEEEe
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SAG-----------------SSGVTKTCEMKTTVL 65 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~--~~~------------~~~-----------------~~~~t~~~~~~~~~~ 65 (352)
....+|+++|..|+|||||+|.|++... +.. +.. ..++|....+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3457999999999999999999986531 000 000 012333333444444
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
.+..+.+|||||..+. ...+. ..+..+|++++|+|+++.........+..+..+ +. .++++++|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEE
Confidence 5778999999995431 22222 234689999999999977777777776665543 42 16899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcC--CcEEEEcCCCcccccchHHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
|+|+...+.+.++..... +..++...+ ..... ..+.||+++.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~---~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMA---FVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEE---EEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCce---EEEEeccCCCCccc
Confidence 999975322334434443 555665555 21111 12567777888776
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=127.35 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC----CCCcceeeEeEEEEe-eC--CceEEEEeCCCCCCCCCCc---HH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGS---EF 88 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~~-~~--~~~~~lvDtpG~~~~~~~~---~~ 88 (352)
..+|+|+|+||+|||||+|+|+|......+.. ....+.......+.. .. ...++++||+|+....... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 36899999999999999999999865222110 001122111111111 01 2367899999997642111 11
Q ss_pred HHHH----HHHHH-------hccc--CCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcch
Q 018636 89 VGKE----IVKCL-------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (352)
Q Consensus 89 ~~~~----~~~~~-------~~~~--~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~ 154 (352)
+... +..++ ...+ +.+|+++|++.++ ..++..+..++..+.. . .++|+|+||+|..+.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~-- 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP-- 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccH--
Confidence 1111 11111 1112 3456788888775 5788888666665532 2 289999999999866
Q ss_pred hcHHHHhcccCChhHHHHHHhcCCcEE
Q 018636 155 KTLEDFLGHECPKPLKEILQLCDNRCV 181 (352)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~ 181 (352)
..+..+... +...+...+..++
T Consensus 183 ~ev~~~k~~-----i~~~~~~~~i~~~ 204 (418)
T 2qag_C 183 EECQQFKKQ-----IMKEIQEHKIKIY 204 (418)
T ss_dssp HHHHHHHHH-----HHHHHHHHTCCCC
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEE
Confidence 555554444 4444444444433
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=127.05 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE----------------------------------------
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (352)
.+|+|||.+|||||||+|+|+|...++.+. +.+|....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~--~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS--GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCS--SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCC--CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 599999999999999999999976533322 22221100
Q ss_pred --------------eEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHH
Q 018636 60 --------------MKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET 123 (352)
Q Consensus 60 --------------~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 123 (352)
...+..+....+++|||||+...... .......+......++.++|++++|++.. ........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 00111123456899999999875321 12234445555555667899999998775 22222233
Q ss_pred HHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+.++..+... ..++++|+||+|+...
T Consensus 192 ~~~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHHHhccc--CCCEEEEEeCCccCCC
Confidence 44444443222 2289999999999854
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=128.36 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|+.++|||||++.|+. .++|.......+.+ .+..+++|||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 899999999999999999981 12344444444544 5778999999997653 222222 2
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE-EEEEe-CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-ilv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+..+|++++|+| +..+.......+..+.. ++. |. ++++| |+|+ .. ..++..... +..++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 357899999999 76677777776666654 343 55 88888 9999 54 444443333 4444433321
Q ss_pred cEEEEcCCCc--ccccc---hHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~--~sa~~---~~~~~~L~~~i~~~~~~ 210 (352)
..+ +..+ .||.+ +.++.+|++.+.+.++.
T Consensus 147 ~~~---~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDW---ECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTC---EEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred Cce---EEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 100 1124 68888 99999999988777643
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-14 Score=113.36 Aligned_cols=163 Identities=19% Similarity=0.175 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.++|... +..... +++.......+.+ ++. .+.++||+|... .. .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~--~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~--------~~--~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTLMV-DGESATIILLDMWENKG--------EN--E 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH--------HH--H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC--ccceeeEEEEEEE-CCeeeEEEEeecCCCcc--------hh--h
Confidence 347999999999999999999997532 221111 1111222222334 444 456899998432 01 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....++..++++++|++++++-+-... .++..+..... ....|++||.||+|+........++ ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 1223455778999999999843222222 23333332211 1123899999999986431011111 11122
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+||+++.++.++++.+.+.+.
T Consensus 173 ~~~~~~~~------e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 VVFDCKFI------ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 22233333 5688999999999998877653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=125.92 Aligned_cols=134 Identities=21% Similarity=0.281 Sum_probs=68.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEee-CCc--eEEEEeCCCCCCCCCCc----
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-DGQ--VVNVIDTPGLFDLSAGS---- 86 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~~~lvDtpG~~~~~~~~---- 86 (352)
..+|+|+|++|+|||||+|.|++...+..+... ...|.........+. .+. .+++|||||+++.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999987664432211 011222222222121 232 67899999996643211
Q ss_pred ---HHHHHHHHHHHhcc---------cCCccEEEEEEec-CCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 87 ---EFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 87 ---~~~~~~~~~~~~~~---------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
..+...+..++... ...+|+++|+++. ...+...+..++..+ ...+ |+|+|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~--piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKV--NIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-S--CEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCC--CEEEEEECCCCCCH-
Confidence 11112222222211 1345788888876 357777766554443 2223 89999999999866
Q ss_pred hhcHHHH
Q 018636 154 EKTLEDF 160 (352)
Q Consensus 154 ~~~l~~~ 160 (352)
..+..+
T Consensus 190 -~ev~~~ 195 (361)
T 2qag_A 190 -KERERL 195 (361)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 555443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=126.43 Aligned_cols=144 Identities=14% Similarity=0.166 Sum_probs=75.8
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCC-CcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCc--
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGS-- 86 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~-- 86 (352)
+....+...+|+|+|+||+|||||+|+|+|........... .......+..+....+ ..++++|++|++......
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchh
Confidence 34443333349999999999999999999985311111110 1111112222222112 267999999998642110
Q ss_pred -HH----HHHHHHHHHhcc---------cCC--ccE-EEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 87 -EF----VGKEIVKCLGMA---------KDG--IHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 87 -~~----~~~~~~~~~~~~---------~~~--~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
.. +...+..++... ... +|+ ++++.|.+.+++..+...++.+. ..+ |+|+|+||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEEEEcchhc
Confidence 01 112222222211 112 344 55566766778888866655543 222 99999999999
Q ss_pred CCcchhcHHHHhcc
Q 018636 150 LEDHEKTLEDFLGH 163 (352)
Q Consensus 150 ~~~~~~~l~~~l~~ 163 (352)
++. ..+..+...
T Consensus 189 Lt~--~E~~~l~~~ 200 (427)
T 2qag_B 189 ISK--SELTKFKIK 200 (427)
T ss_dssp SCH--HHHHHHHHH
T ss_pred cch--HHHHHHHHH
Confidence 976 566655554
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-16 Score=128.73 Aligned_cols=165 Identities=16% Similarity=0.054 Sum_probs=92.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||++.|++.... .....|+.... ..+.. ++ ..+.+|||||....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 91 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY----------- 91 (204)
Confidence 34589999999999999999999865531 11111211111 11122 23 34569999996432
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc-----CC
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CP 166 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~-----~~ 166 (352)
.......+.++|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+... ....+.+... ..
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
Confidence 12222344678999999998844333222 34444444322 2389999999998754 2111111100 00
Q ss_pred hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.....+....+. .....+||+++.++.+|++.+.+.
T Consensus 167 ~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 167 PQGLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 001111111111 123467899999999999887654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-16 Score=145.57 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|+.|+|||||++.|++..... ...+++|.....+.+.+..+..+++|||||..+... ....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~--~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAA--MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHH--SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccc--ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHHH
Confidence 689999999999999999998765422 223344554444444443567889999999655321 1223
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+..+|++++|+|+++.........+..+... +. |+++++||+|+.......+.+.+.. +......++..
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-~v----PiIVViNKiDl~~~~~~~v~~~l~~-----~~~~~e~~~~~ 141 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA-HV----PIVLAINKCDKAEADPEKVKKELLA-----YDVVCEDYGGD 141 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-TC----CEEECCBSGGGTTTSCCSSSSHHHH-----TTSCCCCSSSS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHc-CC----cEEEEEecccccccchHHHHHHHHh-----hhhhHHhcCCC
Confidence 45678999999999977888777777666543 32 8999999999875411111111111 00001111121
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+ ...++||.++.++.+|++.+..++.
T Consensus 142 ~----~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 142 V----QAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp E----EECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred c----eEEEEECCCCCCchhHHHHHHHhhh
Confidence 1 2346799999999999999988764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=127.94 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-------ccccc--CC------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS--AG------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-------~~~~~--~~------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
....+|+++|+.|+|||||++.|++.. .+... .. ..++|.......+.. .+..+.+|||||..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence 345899999999999999999998731 10000 00 112233333333333 568899999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHH
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF 160 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~ 160 (352)
. .. .....+..+|++++|+|+++.........+..+... +- | +++++||+|+... ...++..
T Consensus 88 f-------~~----~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~~-~~~~~~~ 150 (405)
T 2c78_A 88 Y-------IK----NMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVDD-PELLDLV 150 (405)
T ss_dssp G-------HH----HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCCC-HHHHHHH
T ss_pred H-------HH----HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccCc-HHHHHHH
Confidence 2 12 222334688999999999877777777777666543 33 6 8899999999753 1233333
Q ss_pred hcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHH------------------HHHHHHHHHHHHH
Q 018636 161 LGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIV 209 (352)
Q Consensus 161 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~------------------~~~L~~~i~~~~~ 209 (352)
... +..++...+. .. +..+.||.++.+ +.+|++.+...++
T Consensus 151 ~~~-----~~~~l~~~~~~~~~~----~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 151 EME-----VRDLLNQYEFPGDEV----PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHH-----HHHHHHHTTSCTTTS----CEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHH-----HHHHHHHhcccccCC----CEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 333 4455554431 11 112567777776 6777777777654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-14 Score=124.80 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|+|+|.||||||||+|+|++..... .... .|.......+.+.+...++++||||+.........+...+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i---~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~--- 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI---APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR--- 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE---CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc---cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH---
Confidence 468999999999999999999875411 1111 122333334444224788999999986531111111111211
Q ss_pred cccCCccEEEEEEecC-CCC---CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVT-NRF---SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~-~~~---~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++.++++++++ .++ +.....+..+...+... |.++|+||+|.... ..++. +...+.
T Consensus 232 -~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~----P~ILVlNKlDl~~~--~~~~~---------l~~~l~ 295 (416)
T 1udx_A 232 -HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRR----PSLVALNKVDLLEE--EAVKA---------LADALA 295 (416)
T ss_dssp -HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHS----CEEEEEECCTTSCH--HHHHH---------HHHHHH
T ss_pred -HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcC----CEEEEEECCChhhH--HHHHH---------HHHHHH
Confidence 124689999999986 111 11222222222222232 89999999998754 33322 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..+..++ .+||.++.++.+|++.|.+.+...
T Consensus 296 ~~g~~vi------~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 296 REGLAVL------PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp TTTSCEE------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred hcCCeEE------EEECCCccCHHHHHHHHHHHHHhc
Confidence 2232332 467888899999999999988753
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-14 Score=112.72 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|++|||||||+|.|+|..... ....+++.......+.+ ++. .+.++||||.......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRI----------- 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCC-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhh-----------
Confidence 4799999999999999999999875411 11111222222333444 554 4578999995432111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..++++++|+|+....+.... .++..+...... ..|+++++||+|+........++ ...+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence 11123467999999998733332221 233333332211 23899999999986431011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ +.+++ +|+.++.++.++++.+.+.+.
T Consensus 140 ~~--~~~~d----~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NN--LSFIE----TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHHH
T ss_pred cC--CeEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 33 22333 578888999999998877653
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=133.61 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=98.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccccc------------CC-----------------CCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS------------AG-----------------SSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~------------~~-----------------~~~~t~~~~~~~~~~~~ 67 (352)
....+|+|+|++|+|||||+|.|++....... .. ..++|.......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 34589999999999999999999876321000 00 023455554555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
+..+.||||||..+ +.......+..+|++++|+|++.. +.......+..+.. ++. .++
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78899999999644 334445566789999999999731 22334444444433 342 269
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc---EEEEcCCCcccccchHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sa~~~~~~~~L 200 (352)
++|+||+|+.......+++.... +..++...+.. .. ..++||.++.++.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~----~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNIN----WVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCE----EEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCcc----EEeeecccCCCcccc
Confidence 99999999986322344444443 55555444421 11 125677778877755
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=123.81 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||++.+++... ......|+..... .+.. ++.. +.+|||||..... .
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~ 218 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------R 218 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC----CCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------T
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC----CcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------H
Confidence 47999999999999999999986653 1112223222222 2223 4554 4599999965421 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cC-Chh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~-~~~ 168 (352)
.....+..+|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+... ....+.+.. .. ...
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence 223355789999999999844333332 34445554433 2399999999998654 211111110 00 011
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+. .++ .+||+++.++.++++.+.+.+.
T Consensus 294 ~~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 294 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 2334444343 332 5688889999999998877653
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=113.71 Aligned_cols=129 Identities=11% Similarity=0.125 Sum_probs=72.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++......... ...++.. .+ .+..+.+|||||........ .. +
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~---~~----~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKL---SD----Y 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCH---HH----H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCceee-----ee-cCCeEEEEECCCCchHHHHH---HH----H
Confidence 3457999999999999999999998764111011 1111111 11 45677899999987643221 11 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc-----cccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
+......+|++++|+|++ .-.........++...+.. ....|+++|+||+|+... ..+.+...
T Consensus 112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence 222224579999999987 1111111122222222110 012389999999999866 44444333
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-14 Score=126.00 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC-cccc-------------c---------------CCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.|+|||||++.|++.. .+.. + ....++|.......+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 45899999999999999999998541 1100 0 00123344444444444 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.+|||||..+ +......++..+|++++|+|+++. +.......+..+.. ++.. +++
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~---~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLI 148 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eEE
Confidence 8899999999655 222233456789999999999853 33334444444433 2321 689
Q ss_pred EEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCc---EEEEcCCCcccccchHHHHH
Q 018636 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 142 lv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sa~~~~~~~~ 199 (352)
+++||+|+... ....++..... +..++...+.. ..+ .+.||.++.++.+
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~----i~iSA~~g~~v~e 202 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRF----VPVVAPSGDNITH 202 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEE----EECBTTTTBTTTB
T ss_pred EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceE----EEeecccCccccc
Confidence 99999999763 11334444444 55566554421 111 2457777777753
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=104.74 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceE--EEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV--NVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|++|||||||+|.|+|..... ....+++.......+.+ ++..+ .++||+|.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI----------- 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------
Confidence 4799999999999999999999876411 11122222333333444 55544 56999997643211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..++++++|+|.....+-... .++..+...... ..++++++||+|+.......... ...+...
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 163 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 163 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 11123467889999998732221111 233333332111 23899999999986431011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+ +.+++ +|+.++.++.++++.+.+.+
T Consensus 164 ~~--~~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NG--LSFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred cC--CEEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 22 23333 57888899999999876643
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=120.74 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|||.+|+|||||+|+|+|..... ... ...|.......+.+ .+..+.++||||+.........+...+...
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-~~~-pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA-AEY-EFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG-GGT-CSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc-cCC-CCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 344799999999999999999999976422 122 22344555555555 889999999999986543333334444433
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc-ccceEEEEEeCCCCC
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDL 150 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~ 150 (352)
+ ..+|++++|+|+++++. +...+..-...++.. ..+|.++++||+|..
T Consensus 147 i----~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 A----RTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----HHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred H----HhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3 46799999999884332 222222222222221 123788999999964
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=130.55 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEE----------------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKT---------------------------------- 62 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~---------------------------------- 62 (352)
...+|+|+|.+|+|||||+|.|+|........+....|... .+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 45799999999999999999999987521011111112111 0000
Q ss_pred --EEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH--HHHHHhcccCCccEEEEEEecCC-CCCHHHHHHHHHHHHhhcc
Q 018636 63 --TVLKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGK 134 (352)
Q Consensus 63 --~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~ 134 (352)
+.+ .+ ..+.||||||+.+..... +.+. +.......+..+|++++|+|++. .+...+..++..+... +
T Consensus 144 ~~~~~-~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~- 218 (550)
T 2qpt_A 144 MCAQL-PNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-E- 218 (550)
T ss_dssp EEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-G-
T ss_pred eEEec-cccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-C-
Confidence 000 00 368899999998632110 0000 11222223357899999999984 3667767666655432 2
Q ss_pred cccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 135 ~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
.|+++|+||+|.... ..+.+.+..
T Consensus 219 ---~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 219 ---DKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp ---GGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred ---CCEEEEEECCCccCH--HHHHHHHHH
Confidence 289999999999866 556555443
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=128.61 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----------------CCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~lvDtpG~~~~ 82 (352)
.+|+|+|+.|+|||||++.|++..... ...+++|.........+. ....+++|||||..+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 689999999999999999998764311 112223322222222110 1125899999998664
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
... ...++..+|++++|+|+++.+.......+..+... +. |+++++||+|+..
T Consensus 84 ~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~v----PiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIH 136 (594)
T ss_dssp TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGST
T ss_pred HHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CC----eEEEEeccccccc
Confidence 321 12244678999999999977877777777766542 32 8999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=111.86 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.++|... +.... .+.+.......+.+ ++. .+.++||+|.......
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~---------- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX--EVLGEDTYERTLMV-DGESATIILLDMWENKGENEW---------- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CT----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc--cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhh----------
Confidence 47999999999999999999986432 21111 11111111222333 444 4468999985431100
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++..+|++++|++++++-+-... .++..+..... ....|+++|.||+|+........++ ...+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 011223457999999999843332222 23333433221 1123899999999986430011111 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+||+++.++.++++.+.+.+
T Consensus 143 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 VFDXKFI------ETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred HhCCceE------EeccccCCCHHHHHHHHHHHH
Confidence 2233333 568899999999999887655
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=127.98 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=92.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC-cccc-------------cCC---------------CCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------SAG---------------SSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~-------------~~~---------------~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.|+|||||+|.|++.. .+.. +.. ..++|.......+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34799999999999999999998641 1000 000 023444444444444 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCH-------HHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.+|||||..+ +...+...+..+|++++|+|+++.... ..+..+..+.. .+- .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999543 233344456789999999999832211 23333333332 232 1589
Q ss_pred EEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 142 lv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+++||+|+...+...++..... +..++...+...- .-...+.||.++.++.+
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~-~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPK-TVPFVPISGWNGDNMIE 201 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGG-GCCEEECCTTTCBTTTB
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCcc-CceEEEeecccCcCccc
Confidence 9999999974222444444444 5555544432100 00112456666666653
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-13 Score=129.81 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc------ccc---c-----CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FKA---S-----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~------~~~---~-----~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.|+|||||++.|++... +.. . ....++|.......+.. .+..+.+|||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPG---- 368 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPG---- 368 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCC----
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCC----
Confidence 3458999999999999999999986410 000 0 00122333332223333 568899999999
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHh
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l 161 (352)
...+...+...+..+|++++|+|+++......+..+..+.. .+- | +++++||+|+... ...++...
T Consensus 369 -------HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI----P~IIVVINKiDLv~d-~e~le~i~ 435 (1289)
T 3avx_A 369 -------HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV----PYIIVFLNKCDMVDD-EELLELVE 435 (1289)
T ss_dssp -------HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC----SCEEEEEECCTTCCC-HHHHHHHH
T ss_pred -------hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC----CeEEEEEeecccccc-hhhHHHHH
Confidence 33444555556778999999999986666666666665554 343 5 7889999999853 12233232
Q ss_pred cccCChhHHHHHHhcCC---cEEEEcCCCcccccch--------HHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~--------~~~~~L~~~i~~~~~ 209 (352)
.. +..++...+- .. +..++||.++ .++.+|++.+...++
T Consensus 436 eE-----i~elLk~~G~~~~~v----p~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 436 ME-----VRELLSQYDFPGDDT----PIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HH-----HHHHHHHTTSCTTTC----CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HH-----HHHHHHhccccccce----eEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 33 4555554431 11 1124567666 578888888877554
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=110.87 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++...... ......++... + ....+.+|||||..... ..+..++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~~ 76 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDYL 76 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHHH
Confidence 457999999999999999999998764211 11111111111 1 35577899999975421 2222222
Q ss_pred hcccCCccEEEEEEecC---CCCCHHHHHHHHHHHHh---hcccccceEEEEEeCCCCCCc
Q 018636 98 GMAKDGIHAFLVVFSVT---NRFSQEEETAVHRLPNL---FGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~---~~~~~~~~~~l~~~~~~---~~~~~~~~~ilv~nk~D~~~~ 152 (352)
......+|++++|+|++ ..+..........+... .... .|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 135 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhccc
Confidence 22223479999999997 33433333333332221 1122 389999999999866
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=127.72 Aligned_cols=162 Identities=18% Similarity=0.194 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-cccc-----C-------CCCCcceeeEeEEEEee--C--CceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS-----A-------GSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~-----~-------~~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~ 81 (352)
-.+|+|+|+.|+|||||++.|+.... .... . ...++|.......+.+. + +..+++|||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 37899999999999999999975211 0000 0 01123333333334442 2 35788999999765
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
. ...+... +..+|++++|+|+++..+......+..+... +. |+++++||+|+... . .++..
T Consensus 84 F-------~~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-~i----piIvViNKiDl~~a--~-~~~v~ 144 (599)
T 3cb4_D 84 F-------SYEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM-DL----EVVPVLNKIDLPAA--D-PERVA 144 (599)
T ss_dssp G-------HHHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-TC----EEEEEEECTTSTTC--C-HHHHH
T ss_pred H-------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-CC----CEEEeeeccCcccc--c-HHHHH
Confidence 2 2233333 2457999999999877776666665554432 32 89999999999765 2 22222
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +...+ +.. .+.....||.++.++.+|++.+.+.++.
T Consensus 145 ~e-----i~~~l---g~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 145 EE-----IEDIV---GID---ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HH-----HHHHT---CCC---CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HH-----HHHHh---CCC---cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 22 32222 211 0123467899999999999999888764
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=127.33 Aligned_cols=162 Identities=15% Similarity=0.228 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-cccc------------CCCCCcceeeEeEEEEee--CC--ceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~~--~~~~lvDtpG~~~ 81 (352)
-.+|+|+|+.|+|||||++.|++... +... ....++|.......+.+. ++ ..+++|||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 47999999999999999999975211 0000 001123333222333332 22 5778999999765
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
. ...+... +..+|++++|+|+++..+......+..+.. .+- |+++++||+|+... . .++..
T Consensus 86 F-------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~~i----piIvviNKiDl~~a--~-~~~v~ 146 (600)
T 2ywe_A 86 F-------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVE-QDL----VIIPVINKIDLPSA--D-VDRVK 146 (600)
T ss_dssp G-------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHH-TTC----EEEEEEECTTSTTC--C-HHHHH
T ss_pred H-------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHH-CCC----CEEEEEeccCcccc--C-HHHHH
Confidence 3 2233333 347899999999997777777666655543 232 89999999999765 2 22222
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +. ..++.. .+.....||.++.++.+|++.|.+.++.
T Consensus 147 ~e-----l~---~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 147 KQ-----IE---EVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HH-----HH---HTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HH-----HH---HhhCCC---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 22 22 222211 1124567999999999999999888764
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-15 Score=138.23 Aligned_cols=160 Identities=14% Similarity=0.173 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|+.|+|||||++.|.+..... ...+++|.....+.+.+ ++..+++|||||..+.... ..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------RA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------BC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------HH
Confidence 3689999999999999999998654311 11223444443444444 5678899999997654321 12
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|+|+++.........+..+.. .+. |+++++||+|+...+...+.+.+.. ..-+...+++
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~v----PiIVviNKiDl~~~~~~~v~~~l~~-----~~~~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQV----PVVVAVNKIDKPEADPDRVKNELSQ-----YGILPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TTC----CEEEEEECSSSSTTCCCCTTCCCCC-----CCCCTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cCc----eEEEEEEeccccccCHHHHHHHHHH-----hhhhHHHhCC
Confidence 34467899999999986555555555555543 232 8999999999975311222222211 0000011111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+ +..++||.++.++.+|++.+..
T Consensus 140 ~~----~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 ES----QFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SC----EEEECCTTTCTTCTTHHHHTTT
T ss_pred Cc----cEEEEeeeeccCcchhhhhhhh
Confidence 11 1236788999999999998754
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=126.56 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=91.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE--------EEee---CCceEEEEeCCCCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TVLK---DGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--------~~~~---~~~~~~lvDtpG~~~~~~~ 85 (352)
....+|+|+|.+|||||||+|.|++.... .....|....+.. +... .+..+.++||||.......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH
Confidence 34589999999999999999999987641 1111122111111 1111 2567899999995543221
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
.. ..+..+|++++|+|++ .. .....++..+..... . .|+++|+||+|+........++
T Consensus 115 ~~-----------~~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~------ 172 (535)
T 3dpu_A 115 HQ-----------FFMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK------ 172 (535)
T ss_dssp CH-----------HHHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH------
T ss_pred HH-----------HHccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH------
Confidence 11 1123689999999997 33 333456666665433 2 3999999999987541111111
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+.......+..++ .+||.++.|+.+|++.+.+.+...
T Consensus 173 ---~~~~~~~~~~~~~------~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 173 ---INERFPAIENRFH------RISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ---HHHHCGGGTTCEE------ECCC-----CTTHHHHHHHHHTCT
T ss_pred ---HHHHHHhcCCceE------EEecCcccCHHHHHHHHHHHHhcc
Confidence 2223333333333 568889999999999999887653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=112.61 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC--C---CcceeeEeEEEEee-C--CceEEEEeCCCCCCCCC---CcH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--S---GVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSA---GSE 87 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--~---~~t~~~~~~~~~~~-~--~~~~~lvDtpG~~~~~~---~~~ 87 (352)
..+|+|+|+||+|||||+|+|+|...++..... + ..+.......+... . ...++++||+|+..... ...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 378999999999999999999987332211100 0 01111111112111 1 34679999999954211 001
Q ss_pred HHHHHHH----HHHhcc---------cCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 88 FVGKEIV----KCLGMA---------KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 88 ~~~~~~~----~~~~~~---------~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
.+...+. .++... ...+++++|+.+++ ..++..+.. .++.+.. .. ++++|+||.|+.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l~~-~~--~iilV~~K~Dl~~~- 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAIHN-KV--NIVPVIAKADTLTL- 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHHTT-TS--CEEEEECCGGGSCH-
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHHHh-cC--CEEEEEEeCCCCCH-
Confidence 1222111 111111 12346678877765 348877643 3433322 22 89999999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..+... ....+...+..+ ...||.++ ++++++..+.+.+.
T Consensus 171 -~e~~~~~~~-----~~~~~~~~~~~~------~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 -KERERLKKR-----ILDEIEEHNIKI------YHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCC------CCCC----------CHHHHHHHH
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeE------EecCCccc-cccHHHHHHHHHhh
Confidence 444333333 444455444332 35677778 89998887776654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=118.54 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
.+..+.++||||+... . ..+ ...+|++++|++++... +...+.. .++.. +.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~----~~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~~----~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---E----FAV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIEM----ADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---H----HHH-------HTTCSEEEEEECCC-----------------CCS----CSEEEECC
T ss_pred CCCCEEEEECCCcchh---h----hhH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHHhc----CCEEEEee
Confidence 4667899999998642 1 111 24789999999987321 1111111 12222 78999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEE-EcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+|.... ......+.. +...+......... ......+|+.++.++.+|++.|.+.+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 998743 222222222 22222111100000 0112347889999999999999887653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=112.95 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEeeC---CceEEEEeCCCCCCCCCCc---HH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS---EF 88 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~~---~~~~~lvDtpG~~~~~~~~---~~ 88 (352)
.+|+|+|+||+|||||+|+|+|......+... ...+.......+.... ...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999987652221100 0001111111111101 2367999999997643211 11
Q ss_pred HHHH----HHHHHhc----------ccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 89 VGKE----IVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 89 ~~~~----~~~~~~~----------~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
+... +...... ....+++.++++|.. ..++..+...+..+... .++++|+||+|..+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 2211 1121111 112357888888855 78999887777776553 289999999999977
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEE
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (352)
..+..+... +...+...+-.++.
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYP 178 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSS
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccC
Confidence 677766665 66556655555443
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=123.51 Aligned_cols=119 Identities=25% Similarity=0.350 Sum_probs=79.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC---CCcccccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~ 80 (352)
....+|+|+|+.|+|||||+|.|++ ......... ...+|.......+.+ .+..++||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 4458999999999999999999984 211000000 112233333344445 67889999999987
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+.. .....++ ..+|++++|+|++...+......+..+... +. |+++++||+|+...
T Consensus 87 df~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~~----p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-GV----PRIVFVNKMDKLGA 142 (693)
T ss_dssp SCC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred chH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-CC----CEEEEEECCCcccc
Confidence 642 2222222 358999999999877888777777766542 32 89999999999765
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=124.39 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC---CCcccccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~ 80 (352)
....+|+|+|+.|+|||||++.|+. ......... ...+|.......+.+ .+..++||||||..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCcc
Confidence 4458999999999999999999982 210000000 112344444444455 67889999999986
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+. ......++ ..+|++++|+|++...+......+..+... +. |+++++||+|....
T Consensus 89 df-------~~~~~~~l----~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DF-------TIEVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-KV----PRIAFANKMDKTGA 144 (691)
T ss_dssp TC-------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred ch-------HHHHHHHH----HHCCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCcccC
Confidence 63 22222222 367999999999977777777776665542 32 89999999999765
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=119.68 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=84.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCC---------------ccc--ccCCCCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRK---------------AFK--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~---------------~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
.-++|+|+|+.++|||||...|+ |.. ... ......++|.......+.| .+..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 34799999999999999998885 211 000 0011233455555566677 88999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..|.. .++.+.+. -+|+.++|+|+...........++.+... +- |.++++||+|....
T Consensus 109 GHvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~l----p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR-AT----PVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSCCC
T ss_pred CcHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh-CC----ceEEEEecccchhc
Confidence 988863 44444444 67999999999988988888888877764 43 89999999998765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=113.30 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHH-HhhcccccceEEEEEe
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP-NLFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||+.+.. ..+ ...+|++++|++++.. . . +..+. ...+ .|.++|+|
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~~-------~~~aD~vl~Vvd~~~~-~--~---~~~l~~~~~~----~p~ivv~N 202 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TEV-------ARMVDCFISLQIAGGG-D--D---LQGIKKGLME----VADLIVIN 202 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HHH-------HTTCSEEEEEECC------------CCCCHHHHH----HCSEEEEC
T ss_pred cCCCEEEEeCCCccchH-------HHH-------HHhCCEEEEEEeCCcc-H--H---HHHHHHhhhc----ccCEEEEE
Confidence 46789999999987521 111 2578999999998621 1 1 11111 1112 27899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
|+|.... ..+...+.. +...+...+. .+ +....++|+.++.++.+|++.|.+.+.
T Consensus 203 K~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 203 KDDGDNH--TNVAIARHM-----YESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCCh--HHHHHHHHH-----HHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9998754 334433333 3333333221 00 011236788999999999999988765
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=116.60 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH-hhcccccceEEEEEe
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN-LFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||+... ... ....+|++++|++.+.. ... ..++. ++. .|+++|+|
T Consensus 170 ~~~~~iiiDTpGi~~~-------~~~-------~~~~aD~vl~V~d~~~~-~~~-----~~l~~~~~~----~p~ivVlN 225 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-------EVA-------VANMVDTFVLLTLARTG-DQL-----QGIKKGVLE----LADIVVVN 225 (355)
T ss_dssp TTCCEEEEEECSCSSH-------HHH-------HHTTCSEEEEEEESSTT-CTT-----TTCCTTSGG----GCSEEEEE
T ss_pred CCCCEEEEeCCCCCcH-------HHH-------HHHhCCEEEEEECCCCC-ccH-----HHHHHhHhh----cCCEEEEE
Confidence 3577899999997641 111 12578999999998621 110 11111 111 28999999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+|.... ......... +...+.........+ .+..++||.++.|+.+|++.|.+.+..
T Consensus 226 K~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 226 KADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9998754 344433333 443333222100000 123357899999999999999988765
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=122.65 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-ccc-------------cc---------C------CCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFK-------------AS---------A------GSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~-------------~~---------~------~~~~~t~~~~~~~~~~~~ 67 (352)
....+|+++|+.++|||||++.|++.. .+. .+ . ...++|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 345799999999999999999986421 000 00 0 0123444444444555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhcccccce-
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDY- 139 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~- 139 (352)
+..+++|||||..+ +...+...+..+|++++|+|+++.. ....+..+..+.. .+- |
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v----p~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI----NH 183 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC----SS
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC----CE
Confidence 78899999999644 2223334457899999999998432 1223334443332 332 4
Q ss_pred EEEEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhc-CC----cEEEEcCCCcccccchHHHHHHH
Q 018636 140 MIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLC-DN----RCVLFDNKTKDEAKGTEQVRQLL 201 (352)
Q Consensus 140 ~ilv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~sa~~~~~~~~L~ 201 (352)
+++++||+|+... +.+.++..... +..++... +- ...+ .++||.++.++.+++
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~----i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY----MPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE----EECBTTTTBTTSSCC
T ss_pred EEEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceE----Eeccccccccccccc
Confidence 8999999999642 11334444333 44454433 21 1211 256777777776643
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-14 Score=135.65 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------c---------------CCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (352)
....+|+|+|+.|+|||||+|.|++...... + ....++|.......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 3457899999999999999999964311000 0 00112344444444444 5
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-----C--CHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
+..++||||||..+.. ..+...+..+|++++|+|++.. + .......+..+.. ++.. ++
T Consensus 254 ~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI 318 (592)
T ss_dssp -----CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred CeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 6788999999976421 1122334578999999999842 3 4455555555544 3431 48
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-HhcCC---cEEEEcCCCcccccchHHHH--------------HHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN---RCVLFDNKTKDEAKGTEQVR--------------QLLS 202 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~sa~~~~~~~--------------~L~~ 202 (352)
|+|+||+|+.......++..... +..++ ...+. .+. ..++||.++.++. .|++
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~----ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle 389 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVH----FVPISAISGTNLIQKDSSDLYKWYKGPTLLS 389 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEE----EEEECSSSCSSSCSCCCCGGGGTCCSCCHHH
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceE----EEEEecccCcccccccccccccccchHHHHH
Confidence 89999999875322445544444 55555 33332 111 1356788888887 6777
Q ss_pred HHHHHHH
Q 018636 203 LVNSVIV 209 (352)
Q Consensus 203 ~i~~~~~ 209 (352)
.|..+++
T Consensus 390 ~l~~~~p 396 (592)
T 3mca_A 390 ALDQLVP 396 (592)
T ss_dssp HHHTSCC
T ss_pred HHHhhcc
Confidence 7766543
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.6e-13 Score=117.10 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=45.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--------------------eC---CceEEEEeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~lvDt 76 (352)
.+|+|+|.+|+|||||+|+|+|... .....++ .|.........+ .+ ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~-tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPF-TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCC-cccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3799999999999999999998762 1111111 122211111100 02 246889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~ 115 (352)
||+...... .+.+...+...+..+|++++|+|+++
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 998653211 12222333345678999999999974
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=121.38 Aligned_cols=116 Identities=26% Similarity=0.263 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcc--cccC-------C-------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAF--KASA-------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~-------~-------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
...+|+|+|++|+|||||++.|++.... ..+. . ...++.......+.+ .+..+++|||||..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 4589999999999999999999843221 0000 0 012233334444444 677889999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
. ...+..+ +..+|++++|+|+...++......+..+... +. |+++++||+|..
T Consensus 87 f-------~~~~~~~----l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~i----p~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-------VGEIRGA----LEAADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG 139 (665)
T ss_dssp G-------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred h-------HHHHHHH----HhhcCcEEEEEcCCcccchhHHHHHHHHHHc-cC----CEEEEecCCchh
Confidence 2 2222222 3367999999998878888777777776653 32 899999999987
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=122.06 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc-ccc--cCC-------------CCCcceeeEeEEEEeeCC-------ceEEE
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKA--SAG-------------SSGVTKTCEMKTTVLKDG-------QVVNV 73 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~--~~~-------------~~~~t~~~~~~~~~~~~~-------~~~~l 73 (352)
....+|+|+|+.|+|||||++.|+.... +.. ... ..++|.......+.+ .+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 3457999999999999999999964210 000 000 122344333344444 33 78899
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 74 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|||||..+. ...+.. ++..+|++++|+|++..........+..+... +- |+++++||+|....
T Consensus 87 iDTPG~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~i----p~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-KV----PRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CEEEEEeCCCcccc
Confidence 999997653 122222 33467999999999866666666666555432 32 89999999998754
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=117.83 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc--ccC------------------CCCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|+.|+|||||++.|++..... .+. ...++|.......+.+ .+..+.|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 35799999999999999999998532100 000 0111222222333444 67889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..+.. .... .++..+|++++|+|++..........+..+.. .+. |+++++||+|....
T Consensus 91 G~~df~-------~~~~----~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~~i----piivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS-------EDTY----RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-RDT----PILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC-------HHHH----HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-TTC----CEEEEEECTTSCCS
T ss_pred CChhHH-------HHHH----HHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-cCC----CEEEEEcCcCCccc
Confidence 986642 1222 23457899999999987776666555555443 232 89999999999765
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=109.59 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=53.4
Q ss_pred CccEEEEEEecCCC--CCHHHH-HHHHHHHHhh-cccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-C
Q 018636 103 GIHAFLVVFSVTNR--FSQEEE-TAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D 177 (352)
Q Consensus 103 ~~~~~l~v~~~~~~--~~~~~~-~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~ 177 (352)
++|++++|+|++++ .+-... .++..+.... ... .|++||.||+|+... ..++ . ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 58999999999854 444332 3444444331 122 289999999998654 3332 1 22233321 2
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..++ .+||+++.++.++++.+.+.+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 2232 568889999999999887655
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-12 Score=109.08 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHH-HHHHHhhcccccceEEEEEe
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||+.... . .+ ...+|.+++|++++.. . +...+ ..+... +.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~~---~----~v-------~~~~d~vl~v~d~~~~-~--~~~~i~~~i~~~-------~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---T----AV-------ADLTDFFLVLMLPGAG-D--ELQGIKKGIFEL-------ADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSCH---H----HH-------HTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEE
T ss_pred CCCCEEEEECCCCCcch---h----hH-------HhhCCEEEEEEcCCCc-c--cHHHHHHHHhcc-------ccEEEEE
Confidence 46788999999987631 1 11 1478999999987511 1 11100 011111 5677889
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
|+|+.... ......... +...+..... .+ ......+|+.++.++.+|++.|.+...
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~--~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATW--TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTB--CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCC--CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99975430 111112222 2222222220 00 011223788899999999999988765
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.3e-12 Score=106.79 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|..|+|||||++.+.+...... ......|.......+ .....+.+|||+|......... ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l--------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY--------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH--------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh--------hhhhh
Confidence 589999999999999998876543111 111122332222222 2346789999999766421111 01223
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHh--hcccccceEEEEEeCCCCCCc
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNL--FGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+.+++++++|+|.++++...-..+..++... ..+.+ |++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~i--pillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI--NIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTC--EEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCC--cEEEEEECcccCch
Confidence 5789999999999965333322332223221 12233 89999999999865
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=104.94 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~~~~ 83 (352)
.+|+|||.+|+|||||+|+|++... .....+ .+|.......+.+++ ...+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p-~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYP-FCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------C-CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCC-CceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998652 111111 112222222233311 1468999999987532
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.....+... +...+..+|++++|+|++
T Consensus 81 ~~~~gl~~~----fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLGNK----FLANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGTCC----HHHHHHTCSEEEEEEECS
T ss_pred cccchHHHH----HHHHHHhcCeEEEEEecC
Confidence 110111111 122345889999999987
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=115.29 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhh---CCCcccccCCC-------------CCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKASAGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
++|+|+|+.++|||||...|+ |...-...... .++|.......+.| ++..++||||||..|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH-
Confidence 579999999999999998884 32210000011 12444444455566 7889999999998875
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..++.+.+ .-+|+.++|+|+...........++.+... +- |.++++||+|....
T Consensus 81 ------~~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~l----p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 ------LAEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKM-GI----PTIFFINKIDQNGI 134 (638)
T ss_dssp ------HHHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHH-TC----SCEECCEECCSSSC
T ss_pred ------HHHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CeEEEEeccccccC
Confidence 34454444 367999999999988888888888877764 33 78899999998755
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=109.86 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe----------------E-----------------------
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM----------------K----------------------- 61 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~----------------~----------------------- 61 (352)
.|+|||++|||||||+++|+|.... ...|.++..... .
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P---~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP---RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC---CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998541 023333321110 0
Q ss_pred ----------------EEEeeCCceEEEEeCCCCCCC--CCCcHHHHHHHHHHHhcccC-CccEEEEEEecCCCCCHHHH
Q 018636 62 ----------------TTVLKDGQVVNVIDTPGLFDL--SAGSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEEE 122 (352)
Q Consensus 62 ----------------~~~~~~~~~~~lvDtpG~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~ 122 (352)
.........+.++|.||+... ...+......+...+..... ...+++.+++.+..+. ..
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~ 201 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TT 201 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TC
T ss_pred HhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cH
Confidence 000112245889999998763 22233334445554444322 3345555555442222 22
Q ss_pred HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..+.++..+.... .++|+|+||+|....
T Consensus 202 ~~l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 202 EALSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHHHhhcC--CceEEEecchhhcCc
Confidence 2344444432211 279999999999865
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-10 Score=99.44 Aligned_cols=166 Identities=17% Similarity=0.122 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE----eEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE----MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~----~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..|+|+|+||||||||+|+|+|... +..|.++.... ...+.. .....++++|+||+..... .+ .++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~----p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~---~~-~~~L 141 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN----EEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF---PP-DTYL 141 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT----TSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSC---CH-HHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC----ccCceEEECCeecceeEEeccccccCCeeehHhhcccchHH---HH-HHHH
Confidence 5899999999999999999999765 23333222110 011111 1123688999999875321 11 2222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC-------cchhcHHHHhcccCCh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-------DHEKTLEDFLGHECPK 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~-------~~~~~l~~~l~~~~~~ 167 (352)
..+. ....+.+++ ++.+ +...........+.. .+. |+++|+|+.|..- -+.....+.+..
T Consensus 142 ~~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~~----p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~---- 208 (413)
T 1tq4_A 142 EKMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MKK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD---- 208 (413)
T ss_dssp HHTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TTC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH----
T ss_pred HHcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cCC----CeEEEEecCcccccCcccccCCHHHHHHHHHH----
Confidence 2221 122344444 6655 444444444343333 233 8999999987541 011122222222
Q ss_pred hHHHHH----Hhc---CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 168 PLKEIL----QLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 168 ~~~~~~----~~~---~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+..+. ... ....+.++... ..+.++.+|.+.|.+.++..
T Consensus 209 -l~~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 209 -IRLNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp -HHHHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCGG
T ss_pred -HHHHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCccc
Confidence 33332 121 12444443321 23356999999998888663
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-11 Score=114.65 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccC--------------CCCCcceeeEeEEEEee---------------CC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------------DG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~ 68 (352)
...+|+|+|+.|+|||||++.|++........ ...++|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34799999999999999999998542100000 01112332222233332 15
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..++||||||..+.. ..... ++..+|++++|+|+.+..+......+..+... + . |+++++||+|
T Consensus 98 ~~i~liDTPG~~df~-------~~~~~----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~--~--p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SEVTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALGE-R--I--KPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC-------HHHHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--EEEEEEECHH
T ss_pred ceEEEEECcCchhhH-------HHHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C--C--CeEEEEECCC
Confidence 678999999987742 12222 23478999999999977777776665554432 2 2 8999999999
Q ss_pred CC
Q 018636 149 DL 150 (352)
Q Consensus 149 ~~ 150 (352)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 76
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-12 Score=113.84 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccc----ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|.+|+|||||+|+|+|..... ...+....|+.... .+.+ +..+.++||||+.+.......+..+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI-DIPL--DEESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE-EEES--SSSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE-EEEe--cCCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 689999999999999999999863211 10112222222111 1222 2347899999998764222222222222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.+. ....++.++|+++....+-.+...++..+. +.. .|+++++||.|.... ..++....
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~~~ 296 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKADE 296 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHHHH
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHHHH
Confidence 222 235678888888874111111222222222 112 289999999999866 55554443
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-11 Score=101.61 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=92.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-----CCCcccccCCCCCc--------------ceeeEeE-EE--------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-----GRKAFKASAGSSGV--------------TKTCEMK-TT-------------- 63 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-----g~~~~~~~~~~~~~--------------t~~~~~~-~~-------------- 63 (352)
....++++|..|+|||||++.|+ |..........+.. +...... ..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34788999999999999999998 65542222111110 0000000 00
Q ss_pred -----------EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHH-HHHHHHh
Q 018636 64 -----------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNL 131 (352)
Q Consensus 64 -----------~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~ 131 (352)
.+..+..+.||||||..+.. . ...+...+...+.. +++++++|+....+..+... +......
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~----~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETF----L-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHH----H-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchh----h-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 00012368899999965421 0 00111111222345 89999998864444444321 1111110
Q ss_pred hcccccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHH---------------------HHhcCCcEEEEcCCCcc
Q 018636 132 FGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEI---------------------LQLCDNRCVLFDNKTKD 189 (352)
Q Consensus 132 ~~~~~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 189 (352)
.. ....|+++|+||+|..... ...+.+++.. +..+ +...+.. ....+.
T Consensus 167 ~~-~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~-----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ 236 (262)
T 1yrb_A 167 DL-RLGATTIPALNKVDLLSEEEKERHRKYFED-----IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYL 236 (262)
T ss_dssp HH-HHTSCEEEEECCGGGCCHHHHHHHHHHHHC-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEEC
T ss_pred hc-ccCCCeEEEEecccccccccHHHHHHHHhC-----hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceEE
Confidence 00 1112899999999987541 0112333322 1111 1221211 123467
Q ss_pred cccchHHHHHHHHHHHHHHHh
Q 018636 190 EAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 190 sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+.++.++.+|++.+.+.+..
T Consensus 237 SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 237 SAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCcccHHHHHHHHHHHhcc
Confidence 889999999999999888765
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=100.98 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--------------------CCceEEEEeCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--------------------DGQVVNVIDTPGL 79 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~lvDtpG~ 79 (352)
.+|+|||.+|+|||||+|+|++... .....+ ..|.........++ .+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v~~~p-~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-LAANYP-FATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-TCSSCC-GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-cccCCC-CceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999997642 111111 11222222222221 2346899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.........+...+... +..+|++++|+|++
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECC
Confidence 76432222223333332 34789999999986
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-12 Score=115.92 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC-----CcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
.+|+++|.+|+|||||+|+|+|. .....+..++ .|..... +.+ +..+.++||||+.+.......+.....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g-tT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG-TTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT-SSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC-eEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 58999999999999999999986 2222222222 2332222 222 334789999999875422222222222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..+. ....++.++|+++....+-.+...++..+. +.. .|+++++||.|....
T Consensus 238 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 2221 225789999999884221111222222222 112 289999999998865
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=103.93 Aligned_cols=119 Identities=29% Similarity=0.331 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---C------CCc-----cc--ccCCCCCcceeeEeEEEEee------CCceEEEEe
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---G------RKA-----FK--ASAGSSGVTKTCEMKTTVLK------DGQVVNVID 75 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g------~~~-----~~--~~~~~~~~t~~~~~~~~~~~------~~~~~~lvD 75 (352)
.-++|+|+|+.++|||||...|+ | ... .. ......++|.......+.|. ++..++|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34789999999999999998875 1 100 00 00111234444445555553 246799999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|||..|. ..++.+++. -+|+.++|+|+...........++.+... +- |.++++||+|....
T Consensus 92 TPGHvDF-------~~Ev~~aLr----~~DgavlvVDaveGV~~qT~~v~~~a~~~-~l----p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDF-------TIEVERSLR----VLDGAVVVFCGTSGVEPQSETVWRQANKY-GV----PRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHH-TC----CEEEEEECSSSTTC
T ss_pred CCCCccc-------HHHHHHHHH----HhCeEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEccccccCc
Confidence 9998886 455555554 46999999999989999888888887764 32 89999999998755
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-10 Score=101.71 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCC-CcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSA-GSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~-~~~~~~~~~ 93 (352)
...+|+|+|.+|+|||||+|.|+|... +..+.+..++|.....+...+ ..+..+.|+||||+.+... ....-..-+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f 116 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 116 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence 447899999999999999999999864 222111122233222222111 2467899999999987543 221111111
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
.-....+ + ++|+++...++..+...+.++..
T Consensus 117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111111 2 34445555788888877666544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-10 Score=99.05 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~~ 81 (352)
.+.+|+|||.+|+|||||+|+|+|... ..... ..+|.......+.+++ ...+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~-p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENF-PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCC-CccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 457999999999999999999998754 11111 1122222222232211 23589999999876
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.......+... +...+..+|++++|+|+.
T Consensus 99 ~as~~~glg~~----~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNA----FLSHISACDGIFHLTRAF 127 (396)
T ss_dssp --------CCH----HHHHHHTSSSEEEEEEC-
T ss_pred ccchhhHHHHH----HHHHHHhcCeEEEEEecC
Confidence 43221112222 223345889999999986
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=96.55 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~ 80 (352)
..+.+|+|+|+||+|||||+|+|+|.........+ .+|.......+.+.+ +..+.++||||+.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p-~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP-YATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS-SCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC-ceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45689999999999999999999996531221111 123233333333311 1357899999988
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
......+.+...+.. .+..+|++++|+++.
T Consensus 97 ~~~s~~e~L~~~fl~----~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 97 KGASTGVGLGNAFLS----HVRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred cCCcHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 644333323333332 234789999999986
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-09 Score=91.25 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~ 88 (352)
...+|+|+|.+|+|||||+|+|+|......+..++ +|..... +. .+..+.++||||+.........
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG-ITTSQQW--VK--VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCC-eeeeeEE--EE--eCCCEEEEECcCcCCCCCCCHH
Confidence 45799999999999999999999987644433332 2333322 22 2557889999999886554433
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.93 E-value=9.3e-09 Score=93.69 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCCcce-----------eeEeEEEE---------------e
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGVTK-----------TCEMKTTV---------------L 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~~---------------~ 65 (352)
...+|+|+|.+|+||||+++.|+ |..+.-.......... ...++... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998 6654222111100000 01111100 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEE
Q 018636 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVV 143 (352)
Q Consensus 66 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv 143 (352)
..+..+.||||||.... ...+..++..... . ..+|.+++|+|+....+ .......+... . | .++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~-~-i~pd~vllVvDa~~g~~--~~~~a~~~~~~----~--~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVAN-A-IQPDNIVYVMDASIGQA--CEAQAKAFKDK----V--DVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHH-H-HCCSEEEEEEETTCCTT--HHHHHHHHHHH----H--CCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHh-h-hcCceEEEEEecccccc--HHHHHHHHHhh----c--CceEEE
Confidence 04667899999998763 2233444433322 1 26789999999884433 22233333221 1 5 4899
Q ss_pred EeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC------------cEEEEcCCCcccccchHH-HHHHHHHHHHH
Q 018636 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN------------RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~ 207 (352)
+||+|........+. .. ..++. ....|.+....|+..+.+ +.+|++.+.+.
T Consensus 247 lNK~D~~~~~g~~l~-~~------------~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGGALS-AV------------AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTHHHH-HH------------HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHHHHH-HH------------HHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999998754111121 11 11111 122233444567777777 88888887665
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=83.17 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-----ccccCCCCCcce--------eeEeEEEE-----------------eeCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-----FKASAGSSGVTK--------TCEMKTTV-----------------LKDG 68 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-----~~~~~~~~~~t~--------~~~~~~~~-----------------~~~~ 68 (352)
..+|+|+|.+|+|||||++.|++... .......+ .+. ......+. ...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV-SKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC-CHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC-CchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 47899999999999999999986521 00001111 000 00000000 0123
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.+|||+|..... . ......+.+++|+|+...... ..... ..++. |+++|+||+|
T Consensus 109 ~d~iiidt~G~~~~~--~------------~~~~~~~~~i~vvd~~~~~~~----~~~~~-~~~~~----~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLICP--V------------DFDLGENYRVVMVSVTEGDDV----VEKHP-EIFRV----ADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSGG--G------------GCCCSCSEEEEEEEGGGCTTH----HHHCH-HHHHT----CSEEEEECGG
T ss_pred CCEEEEeCCCCCCCC--c------------hhccccCcEEEEEeCCCcchh----hhhhh-hhhhc----CCEEEEeccc
Confidence 456788888842110 0 001245778889998733211 11111 11232 8999999999
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.......+++.... +. ..+....+ ..+|+.++.++.+|++.+.+.+.
T Consensus 166 l~~~~~~~~~~~~~~-----~~----~~~~~~~i----~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 166 LAEAVGADVEKMKAD-----AK----LINPRAKI----IEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GHHHHTCCHHHHHHH-----HH----HHCTTSEE----EECBTTTTBTHHHHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHH-----HH----HhCCCCeE----EEeecCCCCCHHHHHHHHHHHHH
Confidence 853200123332222 22 21211111 25688889999999999887764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=84.90 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=39.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
.+|+|+|.+|+|||||+|.|+|......+...+ +|..... +. .+..+.++||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-ITKGIQW--FS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC-CccceEE--EE--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999987644333332 2332221 11 245778999999998654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=77.58 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+|+|+|..|+|||||++.|++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.8e-08 Score=86.01 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=66.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-------------------eeEeEEEEe-------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-------------------TCEMKTTVL------------- 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-------------------~~~~~~~~~------------- 65 (352)
.+..|+|+|.||||||||++.|+|... +..+.+.. ...+..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~----~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE----QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh----hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 457999999999999999999986432 11111110 000111110
Q ss_pred -----eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcc-cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccc
Q 018636 66 -----KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---GMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136 (352)
Q Consensus 66 -----~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (352)
..+..+.|+||+|.... ...+..++.... ... ...++-+++|+|+... ......++.+...++
T Consensus 368 l~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~--- 439 (503)
T 2yhs_A 368 IQAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG--- 439 (503)
T ss_dssp HHHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC---
T ss_pred HHHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC---
Confidence 12446789999997652 223333333222 211 1246778888887622 222333344444333
Q ss_pred cceEEEEEeCCCCCC
Q 018636 137 FDYMIVVFTGGDDLE 151 (352)
Q Consensus 137 ~~~~ilv~nk~D~~~ 151 (352)
...+|+||+|...
T Consensus 440 --itgvIlTKLD~ta 452 (503)
T 2yhs_A 440 --LTGITLTKLDGTA 452 (503)
T ss_dssp --CSEEEEECGGGCS
T ss_pred --CCEEEEEcCCCcc
Confidence 4678899999643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=81.72 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 21 L~~isl~i~--~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 21 LKNVNLNIK--EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEc--CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334444444 347999999999999999999999876
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=82.82 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=68.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCCc-----------ceeeEeEEEE----------------e
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-----------TKTCEMKTTV----------------L 65 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~~----------------~ 65 (352)
...|+++|.+|+||||++..|+ |..+.-........ .....++... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999887 43321111111000 0000011000 0
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
..+..+.||||||.... +..+..++...... ..+|.+++|+|+... .........+...++ ...+|+|
T Consensus 180 ~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~-----i~gVIlT 247 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEATP-----IGSIIVT 247 (443)
T ss_dssp HTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSCT-----TEEEEEE
T ss_pred hCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhCC-----CeEEEEE
Confidence 02467889999997653 33444444443222 257889999998732 122223333333222 5778999
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 248 KlD~~~~ 254 (443)
T 3dm5_A 248 KLDGSAK 254 (443)
T ss_dssp CCSSCSS
T ss_pred CCCCccc
Confidence 9998755
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=79.36 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=47.4
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC---------CCCHHHHHHHHHHHHhhccc--
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN-- 135 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---------~~~~~~~~~l~~~~~~~~~~-- 135 (352)
.+..+.+|||.| .+.+......++.+++++++|+|+++ .... -...+.++...+...
T Consensus 159 ~~v~l~iwDtaG-----------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr-~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 159 KDIPFHLIDVGG-----------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSR-LTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSCEEEEEECCS-----------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBH-HHHHHHHHHHHHHCGGG
T ss_pred eeeeeccccCCC-----------cccccccHHHHhccCCEEEEEEECCccccccccccccch-HHHHHHHHHHHhhhhcc
Confidence 567789999999 35556666678899999999999871 1111 112233333333211
Q ss_pred ccceEEEEEeCCCCCC
Q 018636 136 VFDYMIVVFTGGDDLE 151 (352)
Q Consensus 136 ~~~~~ilv~nk~D~~~ 151 (352)
...|++|++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 1238999999999764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=79.25 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|+||||||||++.|+|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-08 Score=81.42 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHH-------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------- 90 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~------- 90 (352)
.+..++|+|+||||||||+++|+|... +..|.+........ .. ...-.++.+.|.++......+.+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~----p~~G~I~~~g~~~~-~~-~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK----PLKGEIIYNGVPIT-KV-KGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEETTEEGG-GG-GGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEhh-hh-cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999999876 44444333211100 00 011112334444432111111100
Q ss_pred -----HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHh
Q 018636 91 -----KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 91 -----~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l 161 (352)
..+...+... +.+.. -..+ ..+|++++.++.++..+... |-+++ ++.+|.... ..+.+.+
T Consensus 108 ~~~~~~~~~~~l~~~--gl~~~--~~~~-~~LSgGqkqrv~laraL~~~----p~lllLDEPts~LD~~~~--~~l~~~l 176 (214)
T 1sgw_A 108 VKVNKNEIMDALESV--EVLDL--KKKL-GELSQGTIRRVQLASTLLVN----AEIYVLDDPVVAIDEDSK--HKVLKSI 176 (214)
T ss_dssp CCCCHHHHHHHHHHT--TCCCT--TSBG-GGSCHHHHHHHHHHHHTTSC----CSEEEEESTTTTSCTTTH--HHHHHHH
T ss_pred CchHHHHHHHHHHHc--CCCcC--CCCh-hhCCHHHHHHHHHHHHHHhC----CCEEEEECCCcCCCHHHH--HHHHHHH
Confidence 1111111111 11111 0112 37999999999999998776 44555 477776655 5555555
Q ss_pred cc
Q 018636 162 GH 163 (352)
Q Consensus 162 ~~ 163 (352)
..
T Consensus 177 ~~ 178 (214)
T 1sgw_A 177 LE 178 (214)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=80.04 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-------------------EeEEEEe------------
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------------EMKTTVL------------ 65 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-------------------~~~~~~~------------ 65 (352)
..+..|+|+|+||||||||++.|+|... +..+.+.... .+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~----~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK----NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3458999999999999999999987543 2222211110 0001100
Q ss_pred ------eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce
Q 018636 66 ------KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (352)
Q Consensus 66 ------~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (352)
..+..+.++||+|....... +..++...... -.+|..++++|+... ..-...+..+...++ .
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ra--l~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----i 270 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNRN---LMDEMKKIARV--TKPNLVIFVGDALAG--NAIVEQARQFNEAVK-----I 270 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHH--HCCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----C
T ss_pred HHHHHHhccchhhHHhhccchhHHHH---HHHHHHHHHHH--hcCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----C
Confidence 01345678999998653222 23333322211 136778888887632 122222333332223 4
Q ss_pred EEEEEeCCCCCCc
Q 018636 140 MIVVFTGGDDLED 152 (352)
Q Consensus 140 ~ilv~nk~D~~~~ 152 (352)
.++++||+|....
T Consensus 271 t~iilTKlD~~a~ 283 (328)
T 3e70_C 271 DGIILTKLDADAR 283 (328)
T ss_dssp CEEEEECGGGCSC
T ss_pred CEEEEeCcCCccc
Confidence 6888999997533
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-08 Score=80.76 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||||||||+++|+|-..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 47899999999999999999999876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=78.77 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++++.++.++..+.... +++++ ++.+|.... ..+.+.+..
T Consensus 138 ~~LSgGq~qrv~lAral~~~p---~lllLDEPts~LD~~~~--~~i~~~l~~ 184 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNP---KILMLDEATASLDSESE--SMVQKALDS 184 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCC---SEEEEECCSCSSCSSSC--CHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhcCC---CEEEEECCcccCCHHHH--HHHHHHHHH
Confidence 489999999999999988763 34444 588888766 666655543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=83.81 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC------cccccCCCC----------------------C-cceee-Ee--EEEEeeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK------AFKASAGSS----------------------G-VTKTC-EM--KTTVLKD 67 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~------~~~~~~~~~----------------------~-~t~~~-~~--~~~~~~~ 67 (352)
..|+|+|++|+||||+++.|++.. +.-...... . .+... .. ..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999997631 110000000 0 00000 00 0000014
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccccc-ceEEEEEeC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFTG 146 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ilv~nk 146 (352)
+..+.||||||.... +..+...+.. + .....+|.+++|+++.... . .+..+.. +... . ....+|+||
T Consensus 180 ~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEEeC
Confidence 567889999997652 3333444432 1 2223689999999987332 1 2222222 2211 1 148899999
Q ss_pred CCCCCc
Q 018636 147 GDDLED 152 (352)
Q Consensus 147 ~D~~~~ 152 (352)
+|....
T Consensus 248 ~D~~~~ 253 (432)
T 2v3c_C 248 LDGSAK 253 (432)
T ss_dssp SSSCST
T ss_pred CCCccc
Confidence 998643
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-07 Score=82.36 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC-----------------CcccccCCCCCcceeeEeEE----EEeeC--CceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKT----TVLKD--GQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~lv 74 (352)
+-..|+|+|+.++|||||+|.|+|. ..|..+++....|....... ...+. ...+.++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 3468999999999999999999864 23333333233333222111 11112 2468899
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
||||+++... +......+.. .+.--.++++|-. ...+...+...|.++.+
T Consensus 146 DTeG~~~~~~-~~~~d~~ifa---l~~lLSs~~IyN~--~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 146 DTQGTFDSQS-TLRDSATVFA---LSTMISSIQVYNL--SQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEECCCSSHH-HHHHHHHHHH---HHHHHCSEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred cCCccccccc-chhhhHHHHH---HHHHHhhHHHHhh--cccccHHHHHHHHHHHH
Confidence 9999987532 1111111111 1111124455543 34778888877776555
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-08 Score=82.96 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 23 ~~vsl~i~--~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 23 KGVSLQAR--AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344443 347999999999999999999999876
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.2e-08 Score=79.73 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|-.. +..|.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~I~ 63 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR----PIQGKIE 63 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 347899999999999999999999876 4445443
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-08 Score=88.96 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=27.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 20 ~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 20 KDINLDIH--EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeeEEEEC--CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 33344443 347899999999999999999999876
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-08 Score=80.42 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 347999999999999999999999876
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-07 Score=76.88 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|+||||||||++.|+|..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.7e-08 Score=83.34 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----Eee-CCceE-EEEeCCCCCCC
Q 018636 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLK-DGQVV-NVIDTPGLFDL 82 (352)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~-~~~~~-~lvDtpG~~~~ 82 (352)
+.++..+ .+..++|+|+||||||||+++|+|-.. ++.|.+......... ... ..+.+ ++...+.++..
T Consensus 23 ~vsl~i~--~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 23 NVNINIE--NGERFGILGPSGAGKTTFMRIIAGLDV----PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEC--TTCEEEEECSCHHHHHHHHHHHHTSSC----CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred ceEEEEC--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 3344443 347899999999999999999999876 454544432211110 000 11122 33444443321
Q ss_pred C--------------CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----E
Q 018636 83 S--------------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (352)
Q Consensus 83 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~ 144 (352)
. .......+.+...+... +...+. -..+ ..+|++++.++.++..+... |-+++ +
T Consensus 97 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~-~~~~-~~LSGGq~QRvalAraL~~~----P~lLLLDEP~ 168 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHVL-NHFP-RELSGAQQQRVALARALVKD----PSLLLLDEPF 168 (353)
T ss_dssp SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGGT-TSCG-GGSCHHHHHHHHHHHHHTTC----CSEEEEESTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchHh-cCCh-hhCCHHHHHHHHHHHHHHhC----CCEEEEECCc
Confidence 1 01111112222222211 111100 0012 37999999999999998776 55555 4
Q ss_pred eCCCCCCcchhcHHHHhc
Q 018636 145 TGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (352)
+.+|.... ..+.+.+.
T Consensus 169 s~LD~~~r--~~l~~~l~ 184 (353)
T 1oxx_K 169 SNLDARMR--DSARALVK 184 (353)
T ss_dssp TTSCGGGH--HHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHH
Confidence 77776544 44444433
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-08 Score=85.89 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|-..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 347999999999999999999999866
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-07 Score=83.20 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=67.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCCc-----------ceeeEeEEE---------------Ee
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-----------TKTCEMKTT---------------VL 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~---------------~~ 65 (352)
....|+++|++|+||||++..|+ |..+.-........ ......+.. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999987 33221100000000 000000000 00
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 66 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
..+..+.||||||..... .+..+..++....... .++.+++|+|+... .........+...++ +..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 025678899999975411 1223344444433322 46889999998722 122233333433323 688999
Q ss_pred eCCCCCCc
Q 018636 145 TGGDDLED 152 (352)
Q Consensus 145 nk~D~~~~ 152 (352)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99998754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.1e-07 Score=77.52 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|+||||||||++.|+|..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-08 Score=86.57 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 20 ~~vsl~i~--~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 20 NNINLKIK--DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeEEEEC--CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 33344443 347899999999999999999999876
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-07 Score=83.13 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||||||||+++|+|-.. ++.|.+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i 62 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE----PSRGQIYI 62 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC----CCccEEEE
Confidence 347899999999999999999999876 55554443
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-08 Score=85.28 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++... .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 21 ~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~----p~~G~I~ 62 (359)
T 3fvq_A 21 NDISLSLD--PGEILFIIGASGCGKTTLLRCLAGFEQ----PDSGEIS 62 (359)
T ss_dssp EEEEEEEC--TTCEEEEEESTTSSHHHHHHHHHTSSC----CSEEEEE
T ss_pred EeeEEEEc--CCCEEEEECCCCchHHHHHHHHhcCCC----CCCcEEE
Confidence 33344443 347899999999999999999999876 4444443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-08 Score=86.39 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347999999999999999999999876
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=80.52 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++..+ .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 45 ~~vsl~i~--~Gei~~IiGpnGaGKSTLlr~i~GL~~----p~~G~I~ 86 (366)
T 3tui_C 45 NNVSLHVP--AGQIYGVIGASGAGKSTLIRCVNLLER----PTEGSVL 86 (366)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEE
T ss_pred EeeEEEEc--CCCEEEEEcCCCchHHHHHHHHhcCCC----CCceEEE
Confidence 34444444 347999999999999999999999876 4444443
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.38 E-value=8e-07 Score=82.30 Aligned_cols=124 Identities=10% Similarity=-0.023 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH-H--
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-V-- 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~-~-- 94 (352)
.+..++|+|+||||||||+++|+|... +..|.+.....+.++ ...+.... ..+-.+..... .
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~~~~i~~v----------~Q~~~~~~-~~tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKIEWDLTVAYK----------PQYIKADY-EGTVYELLSKIDASK 375 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBCCCCCCCCEEEE----------CSSCCCCC-SSBHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECceEEEE----------ecCCcCCC-CCcHHHHHHhhhccC
Confidence 357999999999999999999999876 555555432222211 11111111 11111111111 0
Q ss_pred ----HHHhcccCCccEEEEE-EecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhc
Q 018636 95 ----KCLGMAKDGIHAFLVV-FSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 95 ----~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~ 162 (352)
..+.......+.--+. ..+ ..+|++++.++.++..+.... +++|+ ++.+|.... ..+.+.+.
T Consensus 376 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LSGGe~qrv~lAraL~~~p---~lLlLDEPt~~LD~~~~--~~i~~~l~ 445 (538)
T 1yqt_A 376 LNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIAATLLRDA---DIYLLDEPSAYLDVEQR--LAVSRAIR 445 (538)
T ss_dssp HTCHHHHHHTTTTTTCGGGTTSBG-GGCCHHHHHHHHHHHHHTSCC---SEEEEECTTTTCCHHHH--HHHHHHHH
T ss_pred CCHHHHHHHHHHHcCChhhhcCCh-hhCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH--HHHHHHHH
Confidence 0011111111100000 112 379999999999998887762 34444 588887654 55555444
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.3e-08 Score=82.21 Aligned_cols=60 Identities=28% Similarity=0.293 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
+..++|+|+||+|||||+|+|+|......+... |..++... ..+.. . ..+++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhc-C--CEEEecCCCcccc
Confidence 479999999999999999999997653322211 11111111 11111 1 3468999998763
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.4e-08 Score=83.72 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 347899999999999999999999876
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-07 Score=80.96 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 17 ~~vsl~i~--~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 17 DNLSLKVE--SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEEEC--TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred eeeEEEEc--CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 33344443 347899999999999999999999876
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-07 Score=83.58 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 347999999999999999999999876
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.9e-07 Score=83.15 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++.++..+ .+..++|+|+||||||||+++|+|-.. +..|.+..
T Consensus 358 ~l~~i~l~i~--~G~~~~ivG~sGsGKSTll~~l~g~~~----p~~G~i~~ 402 (582)
T 3b5x_A 358 ALSHVSFSIP--QGKTVALVGRSGSGKSTIANLFTRFYD----VDSGSICL 402 (582)
T ss_pred ccccceEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEE
Confidence 4445555554 347999999999999999999999876 55555443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.9e-07 Score=75.91 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||+|||||+|+|+ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4689999999999999999999 655
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=80.96 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 326 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT----ADEGSVT 326 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSBCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 357899999999999999999999876 5555543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=81.63 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~I~~ 415 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKVEW 415 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 357899999999999999999999876 55555543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-06 Score=69.92 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC------CCcccccCCCC-Ccce----------eeEeEE--------------E-Eee
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG------RKAFKASAGSS-GVTK----------TCEMKT--------------T-VLK 66 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g------~~~~~~~~~~~-~~t~----------~~~~~~--------------~-~~~ 66 (352)
...|+++|++|+||||++..|++ ....-...... +... ...+.. + ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999873 22211111100 0000 000000 0 001
Q ss_pred -CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 67 -DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 -~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||..... ....+..++..... ...+|.+++|+++... . ..+..+... .... ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~---~~~~~~~~~-~~~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYE--AIKPDEVTLVIDASIG--Q---KAYDLASKF-NQAS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--G---GHHHHHHHH-HHTC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--H---HHHHHHHHH-HhhC-CCCEEEEe
Confidence 45578899999976511 12223333322211 1257889999988621 1 122333322 2111 13778899
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 248 k~D~~~~ 254 (297)
T 1j8m_F 248 KMDGTAK 254 (297)
T ss_dssp CGGGCTT
T ss_pred CCCCCcc
Confidence 9997643
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=75.03 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....|+|+|++|+||||++..|++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4478999999999999999998754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.6e-07 Score=76.02 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||||||||+|+|+|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 35899999999999999999999876
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-07 Score=78.32 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||+|||||+|+|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 35899999999999999999999765
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.2e-07 Score=74.59 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 67 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE----PSEGKIKH 67 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCccEEEE
Confidence 347999999999999999999999876 55454443
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=70.76 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-------C----------CCcccccCCCCCcceeeEeEE----EEeeCC--ceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-------G----------RKAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~lv 74 (352)
+-..|+|+|..++|||+|+|.|+ | ...|..+++..++|...-... ...+++ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 44788999999999999999765 2 234555445555555544332 112233 358899
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
||.|+++....... ...+..... --...+||-.. ..++..+...|.++.+
T Consensus 146 DTEG~~d~~~~~~~-d~~ifaLa~---LLSS~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 146 DTQGTFDSQSTLRD-SATVFALST---MISSIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EECCBTCTTCCHHH-HHHHHHHHH---HHCSEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred eccCCCCcccCccc-cHHHHHHHH---HHhhheeeccc--ccCCHHHHHHHHHHHH
Confidence 99999987654221 111211111 11245555443 3677878777776654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-06 Score=73.77 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~I~ 69 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS----PSHGECH 69 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC----CSSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEE
Confidence 347999999999999999999999876 5555443
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-07 Score=76.87 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999876
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=82.55 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 347999999999999999999999876
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-06 Score=74.18 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 25 ~~isl~i~--~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 25 KGINMNIK--RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEE--TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 33344443 347999999999999999999999876
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=72.53 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+..++|+|+||||||||+++|+|...
T Consensus 21 l~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 21 LNGITFSIP--EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred eeeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333344443 347999999999999999999999876
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=73.03 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 347999999999999999999999876
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=72.57 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347899999999999999999999876
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-05 Score=69.35 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-------CCCcccccCCCCCc-ce----------eeEeEE--------------E-E
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGSSGV-TK----------TCEMKT--------------T-V 64 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-------g~~~~~~~~~~~~~-t~----------~~~~~~--------------~-~ 64 (352)
....|+++|.+|+||||+...|+ |..+.-........ .. ...+.. + .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34789999999999999998887 55432111111000 00 000000 0 0
Q ss_pred ee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 65 LK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 65 ~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.. .+..+.||||||.... ...+...+..... ...++.+++|+++....+ .+..+.. |.... ....+|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~-----~~~~~~~-f~~~l-~i~gvV 246 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQD-----AANTAKA-FNEAL-PLTGVV 246 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTT-----HHHHHHH-HHHHS-CCCCEE
T ss_pred HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHH-----HHHHHHH-HhccC-CCeEEE
Confidence 11 3567899999997653 2223333333221 236788899998873321 1222222 22111 124578
Q ss_pred EeCCCCCCc
Q 018636 144 FTGGDDLED 152 (352)
Q Consensus 144 ~nk~D~~~~ 152 (352)
+||+|....
T Consensus 247 lnK~D~~~~ 255 (433)
T 2xxa_A 247 LTKVDGDAR 255 (433)
T ss_dssp EECTTSSSC
T ss_pred EecCCCCcc
Confidence 999998644
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.4e-06 Score=69.83 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|+||+||||++..|++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=69.39 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|.+|+||||++..|++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-06 Score=73.75 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347899999999999999999999876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-06 Score=72.39 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 347999999999999999999999865
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.6e-07 Score=84.23 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++.++..+ .+..++|+|+||||||||+++|+|...
T Consensus 370 ~l~~isl~i~--~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 370 VLKDITFHIK--PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp SCCSEEEECC--TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cccceEEEEc--CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3444445544 348999999999999999999999876
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=71.93 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc------ccccCCCCCc-c----------eeeEeEEE--------------E-e
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA------FKASAGSSGV-T----------KTCEMKTT--------------V-L 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~~~~~-t----------~~~~~~~~--------------~-~ 65 (352)
....|+++|++|+||||++..|++... .......... . ....++.. . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 347899999999999999988864321 0000000000 0 00000000 0 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 66 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
..+..+.||||||.... +..+..++...... ..++.+++|+|+... ...+..+.. |... .....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~--~~pd~vlLVvDa~tg-----q~av~~a~~-f~~~-l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEV--LGPDEVLLVLDAMTG-----QEALSVARA-FDEK-VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGT-----THHHHHHHH-HHHH-TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhc--cCCceEEEEEeccch-----HHHHHHHHH-HHhc-CCceEEEE
Confidence 13456889999997653 23333443332221 157888899988622 122222322 2211 11467789
Q ss_pred eCCCCCCc
Q 018636 145 TGGDDLED 152 (352)
Q Consensus 145 nk~D~~~~ 152 (352)
||+|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99987543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=71.40 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||||||||+++|+|-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-06 Score=86.69 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=72.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeC-CceEEEE-eCC-------------CCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKD-GQVVNVI-DTP-------------GLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~lv-Dtp-------------G~~~ 81 (352)
++.+|||||++|||||||+++|+|--. +..|.+..+..- ..+.... ...+.+| ..| |...
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC----CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence 348999999999999999999998765 555554443210 0000000 0111111 112 2222
Q ss_pred CCCCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcc
Q 018636 82 LSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDH 153 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~ 153 (352)
...+++++.+.+..+ +.....+.|..+ -+.+..+|++++.++.+++.++.+. +++|+ +..+|..++
T Consensus 1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v--ge~G~~LSgGQrQriaiARAllr~~---~ILiLDEaTSaLD~~tE- 1253 (1321)
T 4f4c_A 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE- 1253 (1321)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE--TTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSTTSHHH-
T ss_pred CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe--cCCCcccCHHHHHHHHHHHHHHhCC---CEEEEeCccccCCHHHH-
Confidence 233444444333221 111113344322 2333689999999999999998863 45554 466665544
Q ss_pred hhcHHHHhcc
Q 018636 154 EKTLEDFLGH 163 (352)
Q Consensus 154 ~~~l~~~l~~ 163 (352)
..+.+.+.+
T Consensus 1254 -~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1254 -KVVQEALDR 1262 (1321)
T ss_dssp -HHHHHHHTT
T ss_pred -HHHHHHHHH
Confidence 444444443
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=72.67 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=27.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 24 ~~vsl~i~--~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 24 ENVSLVIN--EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33344443 347999999999999999999999876
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=72.79 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+..+ .+..++|+|+||||||||+++|+|-..
T Consensus 36 ~~vsl~i~--~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 36 QGLTFTLY--PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344443 347999999999999999999999876
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=71.84 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347899999999999999999999876
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-07 Score=84.90 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 347999999999999999999999876
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-05 Score=67.79 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC---------HHHHHHHHHHHHhhc
Q 018636 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFG 133 (352)
Q Consensus 63 ~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~l~~~~~~~~ 133 (352)
+.+ ++..+.+|||+|. +.+......++.++++++||++++ .++ ..-...+.++...+.
T Consensus 196 ~~~-~~~~l~i~Dt~Gq-----------~~~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 196 FEI-KNVPFKMVDVGGQ-----------RSERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp EEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred eee-CCeEEEEEeccch-----------hhhhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHHHHHhc
Confidence 344 5778899999994 333344456778999999999998 321 111222333333332
Q ss_pred cc--ccceEEEEEeCCCCC
Q 018636 134 KN--VFDYMIVVFTGGDDL 150 (352)
Q Consensus 134 ~~--~~~~~ilv~nk~D~~ 150 (352)
.. ...|++|++||+|+.
T Consensus 263 ~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred chhhCCCCEEEEEEChhhh
Confidence 11 123899999999975
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-05 Score=67.99 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=70.9
Q ss_pred EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhc
Q 018636 62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFG 133 (352)
Q Consensus 62 ~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~~~ 133 (352)
.+.+ ++..+.+|||+|... +......++.+++++++|+|+++.- ...-...+.++...+.
T Consensus 187 ~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 187 HFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp EEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 3444 577889999999432 3334455778999999999998310 0111223334443332
Q ss_pred cc--ccceEEEEEeCCCCCCcc--h-------------hcHHHHhcccCChhHHHHHHhc-----CCcEEEEcCCCcccc
Q 018636 134 KN--VFDYMIVVFTGGDDLEDH--E-------------KTLEDFLGHECPKPLKEILQLC-----DNRCVLFDNKTKDEA 191 (352)
Q Consensus 134 ~~--~~~~~ilv~nk~D~~~~~--~-------------~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~sa 191 (352)
.. ...|++|++||.|+.... . ...++... ++....... ...+..+ .+||
T Consensus 255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~-----~~~~~f~~l~~~~~~~~~~~~----etSA 325 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA-----YIQCQFEDLNKRKDTKEIYTH----FTCA 325 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHH-----HHHHHHHTTCSCTTTCCEEEE----ECCT
T ss_pred CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHH-----HHHHHHHHhhcccCCCceEEE----EEEC
Confidence 11 123899999999975220 0 01111111 111111111 1222222 4688
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 018636 192 KGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 192 ~~~~~~~~L~~~i~~~~~~ 210 (352)
.++.++.++++.+.+.+..
T Consensus 326 ~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 326 TDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHH
Confidence 8899999999988776643
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.1e-06 Score=84.99 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceE-EEEeCCCC-----------CCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVV-NVIDTPGL-----------FDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~-~lvDtpG~-----------~~~~ 83 (352)
.+..++|||++|||||||+++|+|.-. +..|.+..+..-. .+... -...+ ++-..|.+ +...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~----~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~ 518 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD----VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc----cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence 347999999999999999999999876 5555444321100 00000 00011 12223322 2222
Q ss_pred CCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchh
Q 018636 84 AGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEK 155 (352)
Q Consensus 84 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~ 155 (352)
.+.+++.+.+..+ +...-.+.+..+ -+-+..+|++++.++.+++.++.+. +++|+ +.-+|.... .
T Consensus 519 ~~~~~v~~a~~~a~l~~~i~~lp~G~~T~v--Ge~G~~LSGGQkQRiaiARAl~~~~---~IliLDE~tSaLD~~te--~ 591 (1321)
T 4f4c_A 519 ITREEMVAACKMANAEKFIKTLPNGYNTLV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDAESE--G 591 (1321)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTTTSSEE--SSSSCCCCHHHHHHHHHHHHHTTCC---SEEEEESTTTTSCTTTH--H
T ss_pred chHHHHHHHHHHccchhHHHcCCCCCccEe--cCCCCCCCHHHHHHHHHHHHHccCC---CEEEEecccccCCHHHH--H
Confidence 2333333322221 111112333222 2333589999999999999998863 44444 466665543 4
Q ss_pred cHHHHh
Q 018636 156 TLEDFL 161 (352)
Q Consensus 156 ~l~~~l 161 (352)
.+.+.+
T Consensus 592 ~i~~~l 597 (1321)
T 4f4c_A 592 IVQQAL 597 (1321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-06 Score=72.50 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 347999999999999999999999876
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-06 Score=67.02 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+++|+|+||||||||+++|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.5e-05 Score=70.81 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||+|||||+++|+|...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5689999999999999999999876
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-06 Score=64.99 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||||||||++.|+|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999999865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.3e-06 Score=68.25 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||||||||+++|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-06 Score=69.78 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||||||||+++|+|. .
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 468999999999999999999998 6
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.8e-06 Score=69.93 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..++|+|+||||||||+++|+|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999997
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-06 Score=69.25 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..++|+|+||||||||+++|+|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999996
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.4e-06 Score=69.30 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+..+ .+..++|+|+||||||||+++|+|-..
T Consensus 37 ~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 37 KSINFFIP--SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 33344444 347999999999999999999999754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=4.1e-06 Score=67.12 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|+||||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.6e-06 Score=67.91 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=22.9
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
++..+..+. +..++|+|+||||||||+++|+|..
T Consensus 14 ~~isl~i~~--G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNN--IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------C--CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCC--CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 444555543 4789999999999999999999853
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=66.19 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+++|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-06 Score=66.60 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999998654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.3e-06 Score=65.61 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|+||||||||++.|+|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999976
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.82 E-value=9.9e-06 Score=67.70 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||||||||+++|+|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999999975
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=9.1e-06 Score=67.48 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=22.8
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+.++.++..+ .+..|+|+|+||||||||++.|+|.
T Consensus 12 ~~~l~~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTENLYFQSM--RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----------C--CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeecceeccCC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345556566554 3489999999999999999999874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-05 Score=73.78 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 567999999999999999999999876
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=62.63 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..++|+|+||||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 347899999999999999998764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=63.65 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|++|||||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=65.28 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..|+|+|+||||||||++.|+|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998654
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00041 Score=59.58 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=73.9
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC-------CCCC-HHHHHHHHHHHHh
Q 018636 60 MKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRFS-QEEETAVHRLPNL 131 (352)
Q Consensus 60 ~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~~~~-~~~~~~l~~~~~~ 131 (352)
...+.. .+..+.+|||.| .+.+......++.+++++++|++++ +.-+ ..-...+.++...
T Consensus 159 ~~~~~~-~~v~l~iwDtgG-----------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 159 EYPFDL-QSVIFRMVDVGG-----------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEEE-TTEEEEEEEECC-----------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEEe-eceeeEEEEcCC-----------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 333444 677889999999 3555556667889999999999764 1111 1112233444444
Q ss_pred hccc--ccceEEEEEeCCCCCCcc--hhcHHHHhcccCC---------hhHHHHHHhc----CCcEEEEcCCCcccccch
Q 018636 132 FGKN--VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECP---------KPLKEILQLC----DNRCVLFDNKTKDEAKGT 194 (352)
Q Consensus 132 ~~~~--~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~sa~~~ 194 (352)
+... ...|++|++||+|+.... ...+.++...... .++....... ...++.+ .+||.+.
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~ 302 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDT 302 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecC
Confidence 3321 123899999999975320 0111111111000 0111111111 1122222 3578888
Q ss_pred HHHHHHHHHHHHHHHh
Q 018636 195 EQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 195 ~~~~~L~~~i~~~~~~ 210 (352)
.++..+++.+.+.+..
T Consensus 303 ~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 303 ENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-05 Score=63.10 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|+||||||||++.|+|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999986
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.74 E-value=2e-05 Score=73.04 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..++|+|+||||||||+++|+|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999999865
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.2e-06 Score=72.01 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 37 L~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 37 LENISFSIS--PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEEEEC--TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred eeceeEEEc--CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 333344443 347999999999999999999999754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.1e-05 Score=73.66 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..++|+|+||+|||||+++|+|...
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3568999999999999999999999876
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.1e-05 Score=63.90 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+|+|+|+||+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4789999999999999999998654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4.2e-05 Score=78.18 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+.+++|||+||||||||+++|+|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999876
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.5e-05 Score=64.46 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998853
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.5e-05 Score=67.78 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|+||+|||||+++|+|-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3479999999999999999999864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.8e-05 Score=66.17 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 457999999999999999999998654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.2e-05 Score=68.98 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..|+|+|+||||||||+++|+|... +..+.++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~----~~~g~I~i 208 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP----FDQRLITI 208 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC----TTSCEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC----CCceEEEE
Confidence 346899999999999999999999765 44444443
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=64.92 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC---------CCCHHHHHHHHHHHHhhccc--
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN-- 135 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---------~~~~~~~~~l~~~~~~~~~~-- 135 (352)
++..+.+|||.|... +......++.+++++++|+|+++ .... -.....++..++...
T Consensus 215 ~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 215 DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTTC
T ss_pred CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhcccC
Confidence 567889999999432 33344567789999999999983 0211 122333343333211
Q ss_pred ccceEEEEEeCCCCC
Q 018636 136 VFDYMIVVFTGGDDL 150 (352)
Q Consensus 136 ~~~~~ilv~nk~D~~ 150 (352)
...|++||+||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 123899999999975
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.66 E-value=2e-05 Score=68.27 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+..|+|+|+||||||||+++|+|... +..+.++.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISI 204 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEE
Confidence 45899999999999999999998765 44454443
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.1e-05 Score=72.62 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..++|+|+||+|||||+++|+|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4568999999999999999999999876
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.4e-05 Score=62.01 Aligned_cols=26 Identities=38% Similarity=0.763 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2.8e-05 Score=66.76 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..|+|+|+||||||||+++|.|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999998654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=2.3e-05 Score=80.10 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+.+|+|+|+||||||||+++|+|-..
T Consensus 1049 l~~vsl~i~--~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1049 LQGLSLEVK--KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp BSSCCEEEC--SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred ecceeEEEc--CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 344444443 348999999999999999999999765
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.58 E-value=2.2e-05 Score=64.50 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh-CCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL-GRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~-g~~ 43 (352)
+..|+|+|+||||||||++.|+ |..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999999 764
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=60.84 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=42.2
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC-------C--CCCHHHHHHHHHHHHhhccc--cc
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------N--RFSQEEETAVHRLPNLFGKN--VF 137 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~--~~~~~~~~~l~~~~~~~~~~--~~ 137 (352)
..+.+|||.|... +......++.+++++++|+|++ + .... -.....++...+... ..
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s-~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR-MMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH-HHHHHHHHHHHHTCGGGSS
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH-HHHHHHHHHHHHhccccCC
Confidence 5688999999543 2233455678999999999986 0 1111 112223333332211 12
Q ss_pred ceEEEEEeCCCCC
Q 018636 138 DYMIVVFTGGDDL 150 (352)
Q Consensus 138 ~~~ilv~nk~D~~ 150 (352)
.|++||+||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 3899999999975
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.53 E-value=3.5e-05 Score=72.34 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 347999999999999999999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.53 E-value=3.8e-05 Score=60.85 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.52 E-value=5e-05 Score=61.25 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.7e-05 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|.+||||||+++.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=3.5e-05 Score=69.67 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||||||||+++|+|-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6899999999999999999998655
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.4e-05 Score=61.13 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|++|||||||++.|++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=4.8e-05 Score=62.25 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||++.|+|...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999998443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.4e-05 Score=60.84 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|++|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.46 E-value=5.5e-05 Score=69.37 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..|+|+|+||||||||+|+|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35699999999999999999998765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.46 E-value=6.8e-05 Score=62.16 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh---CCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL---GRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~---g~~~ 44 (352)
...|+|+|+||||||||++.|+ |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3689999999999999999999 7654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=4.1e-05 Score=69.30 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+.+|+|+|+||||||||+++|+|-..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 457999999999999999999998765
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=7.8e-05 Score=61.12 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|.+|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.44 E-value=3.4e-05 Score=75.47 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+.+++|+|+||+|||||+++|+|...
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999876
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=5.8e-05 Score=65.91 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..|+|+|+||||||||+++|+|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45899999999999999999988654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=6.8e-05 Score=64.38 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|++|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999875
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=5.4e-05 Score=67.54 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446899999999999999999998654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=5.3e-05 Score=66.80 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.+++|+|+||||||||+++|+|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999998754
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.41 E-value=9.6e-05 Score=61.48 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~ 44 (352)
.+..|+|+|++||||||+++.|+ |-..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 45799999999999999999998 6543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.39 E-value=6.1e-05 Score=58.67 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|+|+|.+|||||||.+.|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=8.7e-05 Score=59.38 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998764
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00097 Score=59.59 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999998653
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=7.7e-05 Score=64.95 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+.+++|+|+||+|||||++.|+|...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999998764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=9.3e-05 Score=65.22 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 457899999999999999999998643
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.32 E-value=4.5e-05 Score=59.24 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..|+|+|++|||||||++.|+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999997654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0004 Score=67.90 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..+..+... .+..++|+|+||+|||||++.|.+
T Consensus 662 V~ndvsl~~~--~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 662 VPNNTDLSED--SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEECTT--SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ecccccccCC--CCeEEEEECCCCCchHHHHHHHHH
Confidence 3444444433 347899999999999999999864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0013 Score=58.00 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|.|.|++|+|||+|.++|++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998753
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0017 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 579999999999999999998754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=62.09 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..++|+|.+|||||||+|.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.27 E-value=9.5e-05 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|++|+|||||+++|.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999997654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00068 Score=66.49 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHh
Q 018636 18 GERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l 39 (352)
.+..++|+|+||+|||||++.|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999999
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00011 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|++|+|||||+++|++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=57.38 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+|+|+||+|||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=68.48 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhhcccccceE--EEE----EeCCCCCCcchhcHHHHhcc
Q 018636 116 RFSQEEETAVHRLPNLFGKNVFDYM--IVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~~~~--ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
.+|++++.++.+++.+... |- +++ ++.+|.... .++.+.+..
T Consensus 202 ~LSGGe~QRv~iArAL~~~----p~~~lLlLDEPtsgLD~~~~--~~l~~~l~~ 249 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSR----LTGVLYVLDEPSIGLHQRDN--DRLIATLKS 249 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTC----CCSCEEEEECTTTTCCGGGH--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhC----CCCCEEEEECCccCCCHHHH--HHHHHHHHH
Confidence 7889999999998888765 33 555 488887655 666655544
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0019 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=61.24 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
....|+|+|++|||||||++.|.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=57.24 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+..|+|+|.+|||||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998753
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=57.32 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.043 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..++|+|++|+|||||++.|++..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00016 Score=64.98 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
-..+.+++|+|+||||||||++.|+|...
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34568999999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00016 Score=57.89 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=58.51 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.11 E-value=2.9e-05 Score=63.19 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++|+|+||||||||+++|+|...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 568999999999999999998765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=70.23 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+.+++|+|+||||||||+++|+|.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999954
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00032 Score=56.36 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|.+|||||||.+.|.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34789999999999999999998763
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0011 Score=58.27 Aligned_cols=97 Identities=8% Similarity=0.128 Sum_probs=60.8
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcccCChh
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKP 168 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~~~ 168 (352)
+.+.+.+...+...+++++|+|+++ + +..+...+...++. +|+++|+||+|+.... ...+.+++
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d-~---~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~~~~~~~~~~l------- 122 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFD-F---NGSWLPGLHRFVGN---NKVLLVGNKADLIPKSVKHDKVKHWM------- 122 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTS-H---HHHCCTTHHHHSSS---SCEEEEEECGGGSCTTSCHHHHHHHH-------
T ss_pred HHHHHHHHHHhccCcEEEEEEECCC-C---cccHHHHHHHHhCC---CcEEEEEEChhcCCcccCHHHHHHHH-------
Confidence 3444555555567889999999983 2 33344445555442 3899999999997541 11222222
Q ss_pred HHHHHHhcCC---cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.......+. .++ .+||.++.++.+|++.+.+..
T Consensus 123 -~~~~~~~g~~~~~v~------~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 -RYSAKQLGLKPEDVF------LISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp -HHHHHHTTCCCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHHHHHcCCCcccEE------EEeCCCCcCHHHHHhhhhhhc
Confidence 223344443 222 468888999999999988765
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0018 Score=57.84 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc
Confidence 579999999999999999998754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00042 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999974
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.++|+|++|+|||||+++|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.015 Score=46.29 Aligned_cols=69 Identities=6% Similarity=-0.018 Sum_probs=40.2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
...+.|+|||+.... .....+ ..+|.+++++..+ ..+..-...++.+..........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l----~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAV----MVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHH----HHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHH----HHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 457889999985531 111122 2368899988887 44433344555555432111112668999999
Q ss_pred CCC
Q 018636 148 DDL 150 (352)
Q Consensus 148 D~~ 150 (352)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 854
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~ 43 (352)
|+|+|+||+|||||+++|+|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00035 Score=54.29 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0017 Score=57.97 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|.|.|++|+|||+|.++|++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 579999999999999999998753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0004 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..++|+|+||+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999854
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00044 Score=54.29 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
-|+|+|++|+|||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00038 Score=59.35 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||++.|+|...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987643
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00053 Score=58.08 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.....|+|+|.+|||||||++.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455799999999999999999998654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=62.92 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||+|||||++.| |-.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 478999999999999999999 654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00053 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00015 Score=65.14 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.++|+|+||+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998843
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00039 Score=67.19 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..+..+. ..+..++|+|+||+|||||++.|+|.
T Consensus 597 vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc---CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34444444 34578999999999999999999875
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00049 Score=60.48 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 018636 21 TVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~ 40 (352)
.++|+|+||+|||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999986
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0012 Score=52.26 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc---ccceEEEEEeCC-CCCCc-chhcHHHHhcccCC
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLED-HEKTLEDFLGHECP 166 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~ilv~nk~-D~~~~-~~~~l~~~l~~~~~ 166 (352)
.++.+...+|.+.|++|||+|.+++-....+..+..+..++..+ ...|++|+.||. |.... ....+.+.+.
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~---- 189 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH---- 189 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT----
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC----
Confidence 34444556677899999999987331111333333233333221 122888888985 56544 1123333332
Q ss_pred hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+.. ....+++ ..+||.++.|+.+-++++...+
T Consensus 190 --L~~----l~R~W~I----q~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 190 --LNL----LNHPWLV----QDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp --GGG----GCSCEEE----EEEETTTCTTHHHHHHHHTTTT
T ss_pred --CcC----CCCCEEE----EEeECCCCcCHHHHHHHHHHHH
Confidence 111 1233443 3568889999999999987654
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00045 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00072 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..|+|+|.+||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999973
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0049 Score=52.52 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=51.7
Q ss_pred cccCCccEEEEEEecCCCC-CHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
.++.++|++++|+|++++. +... ..++..+.. .+ .|++||+||+|+... ..+++ ...+....
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~~----~piilv~NK~DL~~~--~~v~~---------~~~~~~~~ 143 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-NE----LETVMVINKMDLYDE--DDLRK---------VRELEEIY 143 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-TT----CEEEEEECCGGGCCH--HHHHH---------HHHHHHHH
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-CC----CCEEEEEeHHHcCCc--hhHHH---------HHHHHHHH
Confidence 3567999999999998543 4332 233443332 12 289999999998754 33211 11122222
Q ss_pred C--CcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 177 D--NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 177 ~--~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
. ..+ ..+||+++.++.+++..+.
T Consensus 144 ~~~~~~------~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 144 SGLYPI------VKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TTTSCE------EECCTTTCTTHHHHHHHHS
T ss_pred hhhCcE------EEEECCCCcCHHHHHHHhc
Confidence 2 222 2568888999999987643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00051 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~ 43 (352)
|+|+|++|+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00072 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00054 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00052 Score=65.95 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||+|||||++.|+|-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4689999999999999999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0067 Score=51.69 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=49.7
Q ss_pred ccCCccEEEEEEecCCC-CCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 100 AKDGIHAFLVVFSVTNR-FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.+.++|++++|+|++++ ++.... .++..+.. .+ .|.++|+||+|+.+. ..+. .... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~~----~~~ilV~NK~DL~~~--~~v~-~~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-FK----VEPVIVFNKIDLLNE--EEKK-ELER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-TT----CEEEEEECCGGGCCH--HHHH-HHHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-CC----CCEEEEEEcccCCCc--cccH-HHHH-----HHHHHHHCC
Confidence 45789999999999844 455432 33333332 22 289999999999754 3211 0111 222333333
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSL 203 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~ 203 (352)
..++ .+||+++.++++|++.
T Consensus 143 ~~~~------~~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 143 YDVL------KVSAKTGEGIDELVDY 162 (302)
T ss_dssp CEEE------ECCTTTCTTHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHhh
Confidence 3332 4567777788887765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00057 Score=65.27 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..++|+|+||||||||+++|+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4789999999999999998764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|.+||||||+.+.|.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00073 Score=59.36 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|++|+|||||+++|+|.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999863
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00062 Score=59.11 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..++|+|+||+|||||+++|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00071 Score=57.07 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~ 43 (352)
|+|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998753
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00097 Score=51.71 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l 39 (352)
..|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=56.69 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=58.6
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
+.+.+...+.+.+++++|+|+++ +.. .+...+...++. +|+++|+||+|+... ....+.+.. .+...
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d-~~~---s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFD-FNG---SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTC-SGG---GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCC-CCC---chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHHH
Confidence 44444444457789999999983 322 222333343442 389999999999855 221111111 12223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+.+. ......||.++.++.+|++.+.+...
T Consensus 128 ~~~~g~~~---~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCP---VDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCC---SEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCc---ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44444320 01124688899999999999987653
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|..||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999743
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0012 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999874
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00096 Score=54.87 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999874
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999975
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.001 Score=53.77 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..++|+|++|+|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00067 Score=62.72 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|.+|||||||+++|++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999998754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=57.91 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.++|+|+||+|||||+++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 889999999999999999974
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=50.37 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|+|.+|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.015 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||+|+++|+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999753
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.....|+|+|.+||||||+.+.|+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999974
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0011 Score=55.90 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..++|+|+||+|||||+..|++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998863
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..|+|+|.+||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=59.51 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||+|||||+++|.+-.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3678999999999999999997643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0018 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|++|||||||.+.|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|.+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|..||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0018 Score=56.34 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+|||||+.+|.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999874
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0021 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.002 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=60.88 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHH--hhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNS--ILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~--l~g~ 42 (352)
.+..++|+|+||||||||++. +.|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999 4554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
...|+|+|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999997
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0014 Score=56.50 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 018636 21 TVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~ 40 (352)
..+|+|+||+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 78999999999999999997
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0024 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.002 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999753
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0021 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998863
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0053 Score=51.70 Aligned_cols=88 Identities=7% Similarity=0.090 Sum_probs=53.5
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
......+|+++.|+|+..+.+...... ...++. +|.++|+||+|+.+. ...+.++. .+...+
T Consensus 18 ~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~--~~~~~~~~---------~~~~~g 79 (282)
T 1puj_A 18 TEKLKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA--AVTQQWKE---------HFENQG 79 (282)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH--HHHHHHHH---------HHHTTT
T ss_pred HHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH--HHHHHHHH---------HHHhcC
Confidence 334457899999999986555432222 122232 289999999999864 43333222 222223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..++ ..|+.++.++.+|++.+.+.+.
T Consensus 80 ~~~i------~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 80 IRSL------SINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CCEE------ECCTTTCTTGGGHHHHHHHHHH
T ss_pred CcEE------EEECCCcccHHHHHHHHHHHHH
Confidence 2333 3466677888888887777654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..|+|+|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.022 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.++|+|++|+|||||++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|.|.+||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0022 Score=51.76 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.016 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||||+++|++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=56.37 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0072 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.++|.|++|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....|+|+|.+||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999999754
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.001 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0024 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|..||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=51.63 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999964
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0024 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||+++|++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.032 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||+|.++|+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0042 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0039 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0042 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...+|+|+|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999963
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0025 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=48.79 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=49.48 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.|+|+|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.04 Score=44.01 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=37.2
Q ss_pred CceEEEEeCCCC-CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEe
Q 018636 68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 68 ~~~~~lvDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
...+.|+|||+. ... .....+ ..+|.+++++..+ ..+... ...++.+....+ .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l----~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~~----~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALA----DGCDLLVIPSTPD-ALALDALMLTIETLQKLGN----NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHH----HTSSEEEEEECSS-HHHHHHHHHHHHHHHHTCS----SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHH----HHCCEEEEEecCC-chhHHHHHHHHHHHHhccC----CCEEEEEE
Confidence 456789999986 431 111112 2568888888776 222111 223333433212 26789999
Q ss_pred CCCCCC
Q 018636 146 GGDDLE 151 (352)
Q Consensus 146 k~D~~~ 151 (352)
+.|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998664
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0039 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|..||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0031 Score=49.37 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.02 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999754
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999964
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0045 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|..||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.014 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...++|+|++|+||||+++.|+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0052 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|.|..||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0061 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
....|+|+|..||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999997
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.011 Score=51.96 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.++|.|++|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0059 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||++.++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0063 Score=47.85 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|++|+|||||...|+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999754
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0044 Score=57.29 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||++.|+|...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0059 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.043 Score=46.85 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
....+.|.|++|+|||++++.++...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.006 Score=53.69 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 567899999999999998873
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0063 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|++||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0077 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|+|+|++|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0072 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
....|+|+|.+|+||||+.+.|++..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34579999999999999999987653
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0068 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|.|.|++|+|||+|+++|....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0069 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...|+|.|++|+|||||++.|....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997543
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.008 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|+|+|++|+|||||...|+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999997543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.046 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|++|+|||+|+++|+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999754
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.006 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|++|+|||||+++|++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0076 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..++|+|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3588999999999999976554
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0047 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0067 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|++|+|||||+++|++.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999999999864
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0085 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||||...|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0096 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|+|++||||+|....|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0069 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|+|++|+|||||++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998754
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.011 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||...|+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 57899999999999999999744
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0098 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...|+|+|++|+|||||.++|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999998653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0086 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||||...|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999999988743
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0036 Score=60.66 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHH-hhC
Q 018636 19 ERTVVLLGRTGNGKSATGNS-ILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~-l~g 41 (352)
+..++|+|.||+|||||++. |+|
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCHH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHHH
Confidence 47999999999999999996 653
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0077 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|++|+|||||+++|++.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0096 Score=48.60 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=22.2
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+......+..|+|.|..||||||+++.|...
T Consensus 20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp ------CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444445679999999999999999999754
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0095 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0066 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
-|+|+|++|+|||||+++|++..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 352 | ||||
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 8e-28 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 2e-07 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 5e-06 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 9e-05 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 107 bits (267), Expect = 8e-28
Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 24/222 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
T++++G+ G GKS+T NSI+G + S S + + + G +N+IDTPG
Sbjct: 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF 137
L + ++ I + I L V + R ++ + + FGK ++
Sbjct: 90 LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
+ IV T ++F + + L ++++ +
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDA-------------- 192
Query: 198 RQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKE 239
S + V+++N G+ ++ L + A + L +
Sbjct: 193 --QASDIPVVLIENSGRCNKND--SDEKVLPNGIAWIPHLVQ 230
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.8 bits (118), Expect = 2e-07
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVI 74
+ V + G TG+GKS+ N++ G + A +GV + E + V
Sbjct: 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
D PG+ + + + K + + ++ ++ + + + ++ K
Sbjct: 113 DLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163
Query: 135 NVFDYMIVVFTGGD-DLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179
V T D D+ + E K L++I C N
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQTFDKE--KVLQDIRLNCVNT 203
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
V L+G GKS + + K A T + DG+ + D PGL
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
+ + +G + ++ + I + + + R ++ +++ + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPK 167
++ D+ + + LE F
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD 146
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 40.4 bits (93), Expect = 9e-05
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 21/196 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V L+G GKS+ ++ A T + + + + + + D PG+ +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
++ + +G E ++ + + ++ + P L + +
Sbjct: 62 GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
V D L E K L + L + T G +++ L
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTG---AGLPALKEAL 163
Query: 202 -SLVNSVIVQNGGQPY 216
+LV S +P
Sbjct: 164 HALVRSTPPPEMPKPV 179
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.82 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.82 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.8 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.8 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.79 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.77 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.75 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.75 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.74 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.74 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.72 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.72 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.71 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.7 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.69 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.68 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.67 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.66 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.66 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.66 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.65 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.64 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.63 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.62 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.61 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.61 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.61 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.6 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.59 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.59 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.58 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.57 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.57 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.56 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.55 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.53 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.53 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.51 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.51 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.51 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.49 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.49 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.44 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.41 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.41 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.37 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.35 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.33 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.28 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.26 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.25 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.18 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.17 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.04 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.03 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.98 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.95 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.92 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.92 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.9 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.88 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.83 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.77 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.7 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.69 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 98.62 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.62 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.61 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 98.59 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.54 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.53 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.53 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.51 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 98.48 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.48 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.47 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.47 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 98.46 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.45 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 98.42 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.41 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 98.41 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.4 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.39 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 98.27 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 98.23 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.14 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.1 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.06 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.98 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.49 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.47 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.46 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.37 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.21 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.2 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.15 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.14 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.1 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 97.08 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.06 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.05 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.04 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.02 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.02 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.02 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.01 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.95 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.95 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.95 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.94 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.92 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.91 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.89 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.89 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.89 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.89 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.87 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.82 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.82 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.81 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.8 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.8 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.79 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.78 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.76 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.73 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.71 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.7 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.67 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.66 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.59 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.57 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.53 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.51 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.5 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.48 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.47 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.47 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.45 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.43 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.41 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.36 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.34 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.18 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.13 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.1 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.05 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.96 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.96 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.91 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.87 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.87 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.79 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.79 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.76 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.75 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.71 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.64 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.64 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.64 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.54 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.53 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.46 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.42 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.34 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.33 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.3 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.16 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.09 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.08 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.03 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.01 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 94.91 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.85 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.77 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.69 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.48 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 94.37 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.15 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.13 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.98 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.67 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.45 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 93.44 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.36 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 93.33 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.33 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.27 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.07 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.9 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 92.9 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.83 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.7 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.65 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.62 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.52 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.35 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.07 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.89 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.87 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.71 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.46 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.23 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 90.84 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 90.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.76 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.74 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.16 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 87.56 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.38 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.28 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.1 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.05 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.9 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.01 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 85.01 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 84.07 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.92 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.55 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.59 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.09 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 81.07 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 80.07 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.89 E-value=7.8e-23 Score=170.02 Aligned_cols=155 Identities=23% Similarity=0.321 Sum_probs=118.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..++|+|+|++|+|||||+|+|+|...+.+... .++|..+..+.... .+..+.||||||+.+.......+...+..+.
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~-~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeecCC-CCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 458999999999999999999999988766543 34566666666666 8899999999999987655555444444333
Q ss_pred hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++|+++||+..+ .+++..+...+..+...||..+++++++|+||+|....+...+++++.. ....+..++..+
T Consensus 109 --~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~~ 185 (257)
T d1h65a_ 109 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 185 (257)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHHH
Confidence 235789999999887 5799999999999999999999999999999999987655677777664 222344455544
Q ss_pred C
Q 018636 177 D 177 (352)
Q Consensus 177 ~ 177 (352)
.
T Consensus 186 ~ 186 (257)
T d1h65a_ 186 A 186 (257)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=2.7e-21 Score=152.37 Aligned_cols=172 Identities=21% Similarity=0.184 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
..|+|+|.+|+|||||+|+|+|.......... ..|.......... .+..+.++||||+....... ...+......
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~ 80 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP-QTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDAL---GEFMDQEVYE 80 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-CCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHH---HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccC-Ccccccccceeee-eeeeeeeccccccccccccc---chhccccccc
Confidence 47999999999999999999998653322221 1233333333333 67889999999997754322 2333344444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+...+|++++|+|++.+++..+..++..++...+. .|+++|+||+|+.... ++.+.. +. ...+..
T Consensus 81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~~----~~~~~~-----~~---~~~~~~ 145 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKYP----EEAMKA-----YH---ELLPEA 145 (178)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSSH----HHHHHH-----HH---HTSTTS
T ss_pred ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccCH----HHHHHH-----HH---hhcccC
Confidence 56789999999999988888887777877765443 3899999999987652 111221 22 222222
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCc
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYT 217 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~ 217 (352)
.++ ++||+++.|+.+|++.|.+.+++ +..+|+
T Consensus 146 ~~~-----~iSA~~~~gi~~L~~~i~~~lpe-~p~~~p 177 (178)
T d1wf3a1 146 EPR-----MLSALDERQVAELKADLLALMPE-GPFFYP 177 (178)
T ss_dssp EEE-----ECCTTCHHHHHHHHHHHHTTCCB-CCCSSC
T ss_pred ceE-----EEecCCCCCHHHHHHHHHHhCCC-CCCCCC
Confidence 222 35899999999999999988865 344443
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=3.3e-19 Score=142.40 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=112.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEI 93 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~ 93 (352)
..+-.+|+|+|++|+|||||+|+|+|...... .+....++.. ..... ....+.++|++|.......... ....+
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~-~~~~~~~t~~-~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 95 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLAR-TSSKPGKTQT-LNFYI--INDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------CC-EEEEE--ETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcCCCceEE-eecccceeee-ccccc--ccccceEEEEEeeccccccccccchhhhH
Confidence 33445899999999999999999998753111 1111112111 11111 2345668899888765544332 22233
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........++++++|+|++.+++..+...++.+... +. |+++|+||+|.... ..+++++.. +...+
T Consensus 96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~~----piivv~NK~D~~~~--~~~~~~~~~-----~~~~l 163 (195)
T d1svia_ 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-GI----PVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred Hhhhhccccchhhhhhhhhccccccccccccccccccc-cC----cceechhhccccCH--HHHHHHHHH-----HHHHh
Confidence 33444455678999999999878988888888887763 33 89999999999866 667766665 55555
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.......++ +.||.++.|+++|++.|.+++
T Consensus 164 ~~~~~~~~~-----~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 164 NIDPEDELI-----LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCCEE-----EEeCCCCCCHHHHHHHHHHHh
Confidence 432322222 467888999999999998876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=1e-19 Score=143.46 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
.|+|+|++|+|||||+|+|+|...... .....|+...+.......+..+.++||||+.............+.. .
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~----~ 76 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR----H 76 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHH----H
Confidence 499999999999999999999875322 2233444555544455467789999999987633221111222222 2
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+..+++++++++..............++.........+|+++|+||+|+... ..+++... .+...+..+
T Consensus 77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~---------~~~~~~~~~ 145 (180)
T d1udxa2 77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALAD---------ALAREGLAV 145 (180)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHH---------HHHTTTSCE
T ss_pred HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHHHHH---------HHHhcCCeE
Confidence 3577899999998633222222233333222111122389999999999876 44443322 233323333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+ .+||+++.|+++|++.|.+++...
T Consensus 146 ~------~iSA~tg~gid~L~~~i~~~l~~~ 170 (180)
T d1udxa2 146 L------PVSALTGAGLPALKEALHALVRST 170 (180)
T ss_dssp E------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred E------EEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3 468999999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=2.5e-19 Score=141.81 Aligned_cols=167 Identities=20% Similarity=0.175 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHH----HHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV----GKEIVKC 96 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~----~~~~~~~ 96 (352)
.|+|||.+|+|||||+|+|+|.... ....+ +.|... ..+. ...+.++||||++......... ...+..+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~-g~T~~~--~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRP-GVTRKI--IEIE---WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 74 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSST-TCTTSC--EEEE---ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCC-CEeecc--cccc---cccceecccCCceeccccccccccccchhhhhh
Confidence 6999999999999999999998652 11222 233332 2222 2346789999997765544332 3334444
Q ss_pred HhcccCCccEEEEEEecC-----------CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 97 LGMAKDGIHAFLVVFSVT-----------NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
.......+|++++|+|.. ..+...+...+..+... +. |+++|+||+|........+..+...
T Consensus 75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~----p~iiv~NK~D~~~~~~~~~~~~~~~-- 147 (184)
T d2cxxa1 75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-DI----PTIVAVNKLDKIKNVQEVINFLAEK-- 147 (184)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TC----CEEEEEECGGGCSCHHHHHHHHHHH--
T ss_pred hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-CC----CEEEEEeeeehhhhHHHHHHHHHHH--
Confidence 445556789999999874 12344445555555442 32 8999999999875521222211111
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+...+......+ .++||.++.|+++|++.|.+.+++
T Consensus 148 ---~~~~~~~~~~~~------~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 148 ---FEVPLSEIDKVF------IPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp ---HTCCGGGHHHHE------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---hcccccccCCeE------EEEECCCCCCHHHHHHHHHHHccC
Confidence 100000000111 256889999999999999998865
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.80 E-value=5.9e-19 Score=138.63 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
.++|+++|++|+|||||+|+|++......... ..+.+.......+.+ ++..+.++|+||. ..+
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~-----------~~~ 72 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGH-----------ADL 72 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSH-----------HHH
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccc-----------ccc
Confidence 47899999999999999999997543111000 001122222223333 6788899999993 334
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+...+|++++|+++.......++..+..+... +. |+++|+||+|.... +.+...... +..++
T Consensus 73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~~----p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~~ 140 (179)
T d1wb1a4 73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL 140 (179)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred ccchhhhhhhccccccccccccccchhhhhhhhhhhhc-CC----cceeccccccccCH--HHHHHHHHH-----HHHHH
Confidence 44444455688999999999977877777766665543 43 89999999999876 444333222 33444
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....... ..+..++||+++.|+++|++.|...++.
T Consensus 141 ~~~~~~~--~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 141 QSTHNLK--NSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp HHSSSGG--GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhhcCC--CCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 4322210 1123467999999999999999988765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=3.2e-19 Score=141.38 Aligned_cols=176 Identities=20% Similarity=0.227 Sum_probs=107.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~ 96 (352)
...+|+|+|++|+|||||+|+|+|......... ...+.......+.+ ++..+.++||||+........ .........
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecc-cccccccceeeecc-CCceeeeeccCCccccccccccccccchhHH
Confidence 358999999999999999999999875332222 22233333334444 788899999999854221100 000000011
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
+......+|++++|+|++..+.......+..+... +. |+++|+||+|........+.++... +...+..+
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-~~----~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~ 154 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-GR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 154 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc-CC----ceeeeccchhhhcchhhhhhhHHHH-----HHHHhccc
Confidence 11122467999999999877888777777766653 33 8999999999875532334443332 33222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. .+..++||+++.|+++|++.|.+.+..
T Consensus 155 ~~-----~~i~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 155 DY-----SPLIFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp TT-----SCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CC-----CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 21 123367999999999999999888765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.8e-18 Score=135.03 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|++|+|||||+|.|+|......... .+.|.......+.. ....+.++||||+......... ..........
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~--~~~~~~~~~~ 77 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-EGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIIS--QKMKEVTLNM 77 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCC--HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeccc-Cceeeccccccccc-cccccccccccceeeeeccccc--cccccccccc
Confidence 699999999999999999999765222111 12232222233333 6778889999998765422211 1111122223
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
...+|+++++.+.+..+...+..++.++... +. |+++|+||+|+... ...+ . ...+......
T Consensus 78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~~----pviiv~NK~Dl~~~--~~~~-~--------~~~~~~~~~~-- 139 (171)
T d1mkya1 78 IREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE--FERE-V--------KPELYSLGFG-- 139 (171)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH--HHHH-T--------HHHHGGGSSC--
T ss_pred cccCcEEEEeecccccccccccccccccccc-cc----cccccchhhhhhhh--hhhH-H--------HHHHHhcCCC--
Confidence 3578999999999878888888777777653 43 89999999998743 1111 1 1122222112
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
...+.||+++.|+++|++.|.+.+++.
T Consensus 140 ----~~i~iSAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 140 ----EPIPVSAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp ----SCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ----CeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 234679999999999999999988764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.8e-18 Score=133.67 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=101.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+|+|++|||||||+|+|+|..........+ .+.......+.. .+..+.++||||+.+...... ........
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~ 75 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG-TTRDVLREHIHI-DGMPLHIIDTAGLREASDEVE---RIGIERAW 75 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT-CCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHH---HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccc-cccceEeeeeec-cCceeeeccccccccccccch---hHHHHHHH
Confidence 4799999999999999999999987533222222 222222233334 678899999999987543222 22222333
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++..+|+++++++.....+......+..+....... .|+++|+||+|+... .. .+.. ..+.
T Consensus 76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~--~~---~~~~-----------~~~~ 137 (161)
T d2gj8a1 76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL---GMSE-----------VNGH 137 (161)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC---EEEE-----------ETTE
T ss_pred HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhh--HH---HHHH-----------hCCC
Confidence 4456899999999988555544454444333333322 389999999997644 11 0111 0011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+ .+.||+++.++++|++.|.+-
T Consensus 138 ~~------~~iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 138 AL------IRLSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp EE------EECCTTTCTTHHHHHHHHHHH
T ss_pred cE------EEEECCCCCCHHHHHHHHHhh
Confidence 22 257899999999999988653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.75 E-value=2.7e-17 Score=129.85 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=110.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC------ccc--------ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK------AFK--------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+..+|+++|+.++|||||+++|++.. .+. ......++|.......+.+ .++.++++||||
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPG----- 75 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPG----- 75 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSS-----
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcc-----
Confidence 35799999999999999999997421 000 0011123455555555555 788999999999
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
...+...+..+...+|++++|+|+...+....+..+..+..+..+ ++|+++||+|.... ...++....+
T Consensus 76 ------h~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~----~iIv~iNK~D~~~~-~~~~~~i~~~ 144 (196)
T d1d2ea3 76 ------HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE----HVVVYVNKADAVQD-SEMVELVELE 144 (196)
T ss_dssp ------HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC----CEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCC----cEEEEEeccccccc-HHHHHHHHHH
Confidence 444555555566788999999999988888888888877765333 78999999999754 1334434334
Q ss_pred cCChhHHHHHHhcCCcEEEEcCCCcccccch----------HHHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVI 208 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~----------~~~~~L~~~i~~~~ 208 (352)
++.++..++...- --+..+.|+.++ .++..|++.|.+.+
T Consensus 145 -----i~~~l~~~~~~~~-~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 145 -----IRELLTEFGYKGE-ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp -----HHHHHHHTTSCTT-TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHhCCCcc-cCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence 5556654432100 001125566666 47777777776654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.75 E-value=9.7e-18 Score=129.98 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|.+|||||||+|.|.+... . ....|.......+.. .+..+.++||||. ..+.....
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~----~-~~~~t~~~~~~~~~~-~~~~~~~~D~~G~-----------~~~~~~~~ 64 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDV----D-TISPTLGFNIKTLEH-RGFKLNIWDVGGQ-----------KSLRSYWR 64 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC----S-SCCCCSSEEEEEEEE-TTEEEEEEEECCS-----------HHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCC----C-cccceEeeeeeeccc-cccceeeeecCcc-----------hhhhhHHH
Confidence 47999999999999999999998764 1 222344444444444 7888999999993 33333445
Q ss_pred cccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+...+++++|+|.++..+..+. .+...+....... .|++||.||+|+... ...++.... +. +...
T Consensus 65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 133 (165)
T d1ksha_ 65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDSI 133 (165)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCC--CceEEEEeccccccc--cCHHHHHHH-----HH--hhhh
Confidence 566789999999998844343322 2222222221222 399999999998755 333332211 00 1111
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+.+. ...+||+++.|+.+++++|.+.+
T Consensus 134 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 134 RSHHWR---IQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp CSSCEE---EEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCCE---EEEEECCCCCCHHHHHHHHHHHH
Confidence 221111 12568899999999999887654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=7.2e-19 Score=135.79 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc-H-HHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-E-FVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~-~-~~~~~~~~~~ 97 (352)
++|+|+|.+|+|||||+|+|+|..........+ .+.......+.. .+..+.++||||+....... + .........
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~- 77 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG-TTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE- 77 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC-CSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeecccc-ccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence 589999999999999999999876533222222 222222333334 67888999999986533211 1 111222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
+..+|++++|+|++++....+......+. . . ++++++||.|.... ...++.... +.. .
T Consensus 78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~---~-~---~~i~~~~k~d~~~~--~~~~~~~~~---------~~~-~ 135 (160)
T d1xzpa2 78 ---IEKADIVLFVLDASSPLDEEDRKILERIK---N-K---RYLVVINKVDVVEK--INEEEIKNK---------LGT-D 135 (160)
T ss_dssp ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT---T-S---SEEEEEEECSSCCC--CCHHHHHHH---------HTC-S
T ss_pred ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc---c-c---cceeeeeeccccch--hhhHHHHHH---------hCC-C
Confidence 24679999999999777776665544332 2 1 78999999999876 333332221 111 1
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.. ..++||+++.|+++|++.|.+
T Consensus 136 ~~------~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 136 RH------MVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp TT------EEEEEGGGTCCHHHHHHHHHH
T ss_pred Cc------EEEEECCCCCCHHHHHHHHHh
Confidence 12 235799999999999987754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=1.3e-18 Score=137.68 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
.|+|+|++|||||||+|+|+|..... ......|+........+.++..+.++||||+.........+...+...+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~--- 77 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 77 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCce--ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHH---
Confidence 59999999999999999999877522 2223345555555555556788999999997532222222223333322
Q ss_pred cCCccEEEEEEecC--CCCCHHHHHH-HHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 101 KDGIHAFLVVFSVT--NRFSQEEETA-VHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 101 ~~~~~~~l~v~~~~--~~~~~~~~~~-l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..++.++++++.. ......+... .......... ...+|+++|+||+|.... ... +..+....
T Consensus 78 -~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~-----------~~~~~~~~ 143 (185)
T d1lnza2 78 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEKL 143 (185)
T ss_dssp -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHHC
T ss_pred -HHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHH-----------HHHHHHHh
Confidence 2456677777654 2333333222 2222222221 123489999999998754 211 11122222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+ +...+||.++.|+++|++.|.+.++.
T Consensus 144 ~~~~----~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 144 TDDY----PVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp CSCC----CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred ccCC----cEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 2211 33577999999999999999998865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.72 E-value=2e-17 Score=129.57 Aligned_cols=165 Identities=18% Similarity=0.135 Sum_probs=98.5
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
...++....+|+|+|..|||||||+|.|.+.......+ +.......+.. .+..+.++|++|...
T Consensus 9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~i~~-~~~~~~i~d~~g~~~---------- 72 (176)
T d1fzqa_ 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQS-QGFKLNVWDIGGQRK---------- 72 (176)
T ss_dssp CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECSSCGG----------
T ss_pred hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-----eeeeeEEEecc-CCeeEeEeecccccc----------
Confidence 33455667999999999999999999998876422111 11222333333 577889999999543
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
+.......+..+|++++|+|+++..+..+. ..+..+..... ....|++||.||+|+... ......... +.
T Consensus 73 -~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~ 143 (176)
T d1fzqa_ 73 -IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN 143 (176)
T ss_dssp -GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT
T ss_pred -chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHHH-----HH
Confidence 112223345688999999999854443332 22222222111 112389999999999865 333222111 00
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
......+.+. ..++||.++.|++++++++.+
T Consensus 144 --~~~~~~~~~~---~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 144 --LHTIRDRVWQ---IQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp --GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHH
T ss_pred --HHHHHhcCCE---EEEEeCCCCCCHHHHHHHHHh
Confidence 0111222211 125689999999999998754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.72 E-value=2.8e-17 Score=127.15 Aligned_cols=158 Identities=14% Similarity=0.096 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.++|+|+|+.|+|||||++.|.+... ......|.......+.. ++..+.+||+||... +.....
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~----~~~~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~ 65 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQF----NEDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE 65 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC----CCSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCC----CCcccccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence 47999999999999999999987654 11222344444444444 678889999999321 222222
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHH-HHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVH-RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~-~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+.+++++++|+|+++.-+-.+ ...+. .+....... .|++||.||.|+... ....+.... +. ...+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~pi~lv~nK~Dl~~~--~~~~~i~~~-----~~--~~~~ 134 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGA--LDEKELIEK-----MN--LSAI 134 (164)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred ccccccchhhcccccccccccchhhhhhhhhhhhhcccC--CcEEEEEeccccchh--hhHHHHHHH-----HH--HHHH
Confidence 34468999999999884333222 22222 222222222 389999999998754 333322221 10 0111
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+... ..++|+.++.|+.+++++|.+
T Consensus 135 ~~~~~~---~~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 135 QDREIC---CYSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp CSSCEE---EEECCTTTCTTHHHHHHHHHH
T ss_pred HhCCCE---EEEEeCcCCcCHHHHHHHHHH
Confidence 111111 135688899999999988765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=4.1e-17 Score=132.81 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEE-----------------eeCCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----------------LKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~~~~lvDtpG~~~~ 82 (352)
..|+|+|++++|||||+|+|++..... ...++++......... ...+..++++||||..+.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchh--eecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 469999999999999999998754311 1112222211111110 114567899999997553
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.. ....+...+|++++|+|+...+...+...+..+... +. |+++++||+|+...
T Consensus 84 ~~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 84 TT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIHG 137 (227)
T ss_dssp TT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSTT
T ss_pred cc-----------cchhcccccceEEEEEecccCcccchhHHHHHhhcC-CC----eEEEEEECccCCCc
Confidence 21 122344678999999999988999999888887764 43 89999999998754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.70 E-value=2e-16 Score=125.80 Aligned_cols=167 Identities=13% Similarity=0.175 Sum_probs=103.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEe----------------------eCCceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVL----------------------KDGQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~----------------------~~~~~~~lv 74 (352)
+..+|+++|+.++|||||+|+|+|....... ....+.|.........+ .....++++
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence 3478999999999999999999985321100 00111121111111100 012457899
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
|||| ...+..........+|++++|+++.... .......+..+..+ +.. ++++++||+|..+.
T Consensus 84 DtPG-----------h~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~---~iiv~inK~D~~d~- 147 (195)
T d1kk1a3 84 DAPG-----------HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK- 147 (195)
T ss_dssp ECSS-----------HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH-
T ss_pred ccch-----------hhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCc---cceeeeecccchhh-
Confidence 9999 4445555555556789999999998654 44455566655554 432 68888999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
......... +..++..+....+ +..+.||.++.|+++|++.|.+.++
T Consensus 148 -~~~~~~~~~-----~~~~~~~~~~~~~---~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 148 -EKALENYRQ-----IKEFIEGTVAENA---PIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -HHHHHHHHH-----HHHHhccccCCCC---eEEEEECCCCCCHHHHHHHHHHHCc
Confidence 444333333 4445544332111 1236799999999999999987653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=5.3e-16 Score=122.62 Aligned_cols=176 Identities=13% Similarity=0.180 Sum_probs=101.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
|.+...+|+|+|.+|+|||||+|+|++........ ...++...........+......++++................
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS--KTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL 89 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeec--ccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence 44566899999999999999999999876422211 1122222222222224444444455544443333332222233
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.........+..++.+.+............+..+... .. ++++++||+|.... ......+.. +.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l~ 157 (188)
T d1puia_ 90 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-NI----AVLVLLTKADKLAS--GARKAQLNM-----VREAVL 157 (188)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred hhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-cc----cccchhhhhhccCH--HHHHHHHHH-----HHHHHH
Confidence 2233333456667777777766767777776666554 22 78899999999876 555555554 555555
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
......- ..++||+++.|+++|++.|.+++
T Consensus 158 ~~~~~~~----~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 158 AFNGDVQ----VETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp GGCSCEE----EEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhCCCCc----EEEEeCCCCCCHHHHHHHHHHHh
Confidence 4443322 23579999999999999998775
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.3e-16 Score=123.96 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|+|||||++.|++..... ......+.......+.. .+ ..+.+|||||... +....
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~-----------~~~~~ 71 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGQER-----------YRTIT 71 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCc--ccccccccceeeEEEEe-ecceEEEEEEECCCchh-----------hHHHH
Confidence 689999999999999999998654311 11112222222223333 32 3578899999432 22223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|.++.-+.... .++..+........ |++++.||+|.... ..+ .+. ...+...
T Consensus 72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~--~~v~~~~--------~~~~~~~ 139 (169)
T d3raba_ 72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA--QVLLVGNKCDMEDE--RVVSSER--------GRQLADH 139 (169)
T ss_dssp HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCC--EEEEEEECTTCGGG--CCSCHHH--------HHHHHHH
T ss_pred HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcc--eEEEEEeecccccc--cccchhh--------hHHHHHH
Confidence 4456789999999998833222222 23333333333333 88889999997654 111 111 1223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+-.|+ .+||+++.++.++++.+.+.+.
T Consensus 140 ~~~~~~------e~Sak~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 140 LGFEFF------EASAKDNINVKQTFERLVDVIC 167 (169)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCEEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 344443 5688889999999998877653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.69 E-value=1.2e-16 Score=125.74 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=99.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
......+|+|+|.+|||||||++.|.+.......+ |.......... .+..+.++||||.....
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~D~~g~~~~~----------- 75 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIR----------- 75 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CC-----------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ccceEEEEEee-CCEEEEEEecccccccc-----------
Confidence 34566999999999999999999998776533222 22222333333 67788999999965432
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+.+++++++|+|.+++.+..+. ..+..+..... ....|++||.||+|+... ...++.... +. +.
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~-----~~-~~ 146 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKE-----LN-LV 146 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHH-----TT-TT
T ss_pred hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccccc--cCHHHHHHH-----HH-HH
Confidence 1223455789999999999855554432 23332222111 112399999999998754 222222221 00 00
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
......+.+ .++||.++.|+.+++++|.+.+.+
T Consensus 147 ~~~~~~~~~----~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 147 ELKDRSWSI----VASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp TCCSSCEEE----EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHhhCCCEE----EEEECCCCCCHHHHHHHHHHHHHH
Confidence 001111211 357999999999999998887654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.68 E-value=1.7e-16 Score=127.08 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=104.1
Q ss_pred CccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccC-CCCCcceeeE--eEEEE----------------------
Q 018636 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCE--MKTTV---------------------- 64 (352)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-~~~~~t~~~~--~~~~~---------------------- 64 (352)
|....| .++|+++|+.++|||||++.|+|........ .....+.... .....
T Consensus 2 ~~~~~p---~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (205)
T d2qn6a3 2 WPKVQP---EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGS 78 (205)
T ss_dssp CCCCCC---CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred CCCCCC---CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeee
Confidence 444444 3899999999999999999999743211000 0000000000 00000
Q ss_pred ---eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceE
Q 018636 65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 65 ---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
....+.++++|||| ...+...+..+...+|++++|+++...+ ....+..+..+.. ++.. ++
T Consensus 79 ~~~~~~~r~~~iiD~PG-----------H~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~---~i 143 (205)
T d2qn6a3 79 DDEPKFLRRISFIDAPG-----------HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVK---NL 143 (205)
T ss_dssp CSCCEEEEEEEEEECSC-----------HHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CE
T ss_pred eccccceEEEEEeccch-----------HHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCc---ee
Confidence 00124688999999 4555555555667899999999998766 5555556665555 3432 78
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
++++||+|+... ......... ....+.......+ +..+.||.++.++++|++.|...++
T Consensus 144 IV~vNK~Dl~~~--~~~~~~~~~-----~~~~l~~~~~~~~---p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 144 IIVQNKVDVVSK--EEALSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp EEEEECGGGSCH--HHHHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eeccccCCCccc--hHHHHHHHH-----HHHHhccccCCCC---eEEEEeCCCCCChHHHHHHHHhhCC
Confidence 899999999866 443333222 3333332221111 2247899999999999999887654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.1e-16 Score=119.22 Aligned_cols=157 Identities=22% Similarity=0.148 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|+|||||++.+.+...... .+.+.......+.+ ++ ..+.+|||||.... ....
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~----~~~~~~~~~~~i~~-~~~~~~l~i~D~~g~e~~-----------~~~~ 65 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE----AEAAGHTYDRSIVV-DGEEASLMVYDIWEQDGG-----------RWLP 65 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc----CCeeeeeecceeec-cccccceeeeeccccccc-----------ceec
Confidence 4899999999999999999998654111 11111111122333 44 35678999995432 1122
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-... .++..+....+ ....|+++|.||+|+.....-...+ ...+....
T Consensus 66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~~~~~ 135 (168)
T d2gjsa1 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVF 135 (168)
T ss_dssp HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhcchhHHH---------HHHHHHhc
Confidence 2345689999999999844333322 23333433322 1223899999999986531001111 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..|+ .+||+++.++.+++..+.+.+
T Consensus 136 ~~~~~------e~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 136 DCKFI------ETSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp TSEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 44444 468899999999998876544
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.67 E-value=1.5e-16 Score=124.03 Aligned_cols=159 Identities=15% Similarity=0.144 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|.+|||||||++.+.+....... .|.......... ....+.++|+||.... ...
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~ 72 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPL 72 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEEEEEE-TTEEEEEEEESCCGGG-----------HHH
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEEEeec-cceeeEEecCCCcchh-----------hhH
Confidence 34589999999999999999999876542211 122223333333 5678899999995542 223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHH-HHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHR-LPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..++++++|+|++..-+.... ..+.. +...... ..|++++.||+|+... ....+.... +. +.
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~--~~piiiv~NK~Dl~~~--~~~~~i~~~-----~~--~~ 141 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLPDA--MKPHEIQEK-----LG--LT 141 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccc--cceeeeeeeccccccc--ccHHHHHHH-----HH--HH
Confidence 34456789999999999833232221 22222 2211112 2399999999998754 222221111 00 11
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+.. .+.+ .++||.++.++.+++++|.+-
T Consensus 142 ~~~~~~~~~----~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 142 RIRDRNWYV----QPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp GCCSSCEEE----EECBTTTTBTHHHHHHHHHHH
T ss_pred HHHhCCCEE----EEeeCCCCcCHHHHHHHHHHh
Confidence 1222 2222 367899999999999988653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.7e-16 Score=121.00 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|||||||++.+++... ... ...+.+.......+.+ ++. .+.+|||||... +....
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f-~~~-~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~ 71 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLF-PPG-QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT 71 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CTT-CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCc-ccccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 6899999999999999999986553 111 1112233333333444 443 467899999322 23334
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.+++++++|++.+++-+-.. ..++..+........ |+++|.||+|.........++ ...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~ilvgnK~D~~~~~~v~~~~---------~~~~~~~~ 140 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV--ITVLVGNKIDLAERREVSQQR---------AEEFSEAQ 140 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCSSCHHH---------HHHHHHHH
T ss_pred HHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccc--cEEEEEeecccccccchhhhH---------HHHHHHhC
Confidence 456689999999999874332222 234444444333333 889999999976431111121 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHH-HHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN-SVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~-~~~~ 209 (352)
+..++ .+||+++.++++++..+. +++.
T Consensus 141 ~~~~~------~~SAktg~gV~e~f~~l~~~l~~ 168 (171)
T d2ew1a1 141 DMYYL------ETSAKESDNVEKLFLDLACRLIS 168 (171)
T ss_dssp TCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEE------EEccCCCCCHHHHHHHHHHHHHH
Confidence 44443 478999999999976544 4443
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=4.2e-16 Score=136.99 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC--cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|++|+|||||+|+|+|......+....+ .|+.. ...+...++..+++|||||+.............
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~-~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~---- 130 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK---- 130 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHH----
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCcee-eeeeeccCCCeEEEEeCCCcccccccHHHHHHH----
Confidence 48999999999999999999999654332222211 12222 222334466779999999998765443332211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc-------hhcHHHHhcccCChhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-------EKTLEDFLGHECPKPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-------~~~l~~~l~~~~~~~~ 169 (352)
......|+++++.+ .+++..+...+..+... +. |+++|+||+|..... ....++.+.. .....
T Consensus 131 --~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~k----~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~~~ 200 (400)
T d1tq4a_ 131 --MKFYEYDFFIIISA--TRFKKNDIDIAKAISMM-KK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRLNC 200 (400)
T ss_dssp --TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-TC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHHHH
T ss_pred --hhhhcceEEEEecC--CCCCHHHHHHHHHHHHc-CC----CEEEEEeCcccccchhhhcccccccHHHHHHH-HHHHH
Confidence 12335677777765 37889999888888774 54 999999999964110 0011122221 00013
Q ss_pred HHHHHh---cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+.. +...++.++... ....++.+|.+.+.+.++.
T Consensus 201 ~~~l~~~~~~~~~vflvS~~~----~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 201 VNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHcCCCCCCEEEecCCc----ccccCHHHHHHHHHHHhHH
Confidence 333332 233455544322 2235788999888887765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.9e-16 Score=121.27 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe-eC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||++.+++... ......|....+..... .+ ...+.+|||+|. ......
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f----~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~-----------~~~~~~ 68 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ-----------EKFGGL 68 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC---------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTH-----------HHHSSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC----Ccccccceeccccccccccccccccccccccccc-----------ccccee
Confidence 6899999999999999999987653 11222233222222221 13 346789999992 333333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.+++++++|+|++++-+-.. ..++..+..... .. |+++|.||+|+... ...++ .......
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~--piilvgnK~Dl~~~--~~~~~---------~~~~~~~ 134 (170)
T d1i2ma_ 69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NI--PIVLCGNKVDIKDR--KVKAK---------SIVFHRK 134 (170)
T ss_dssp GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-SC--CEEEEEECCCCSCS--CCTTT---------SHHHHSS
T ss_pred cchhcccccchhhccccccccccchhHHHHHHHhhccC-CC--ceeeecchhhhhhh--hhhhH---------HHHHHHH
Confidence 4455678999999999984433222 234444444333 23 99999999998755 21111 1112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..|+ .+||+++.++.+++..+.+.+..
T Consensus 135 ~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 135 KNLQYY------DISAKSNYNFEKPFLWLARKLIG 163 (170)
T ss_dssp CSSEEE------EEBTTTTBTTTHHHHHHHHHHHT
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHcc
Confidence 233333 47888999999999988776543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=8.1e-16 Score=120.35 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||++.+.+... +.....|.... ...... ++ ..+.++||+|.... ...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~ 66 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQF----PEVYVPTVFENYVADIEV-DGKQVELALWDTAGLEDY-----------DRL 66 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------TTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC----CCCcCCceeeeccccccc-cccceeeeccccCccchh-----------ccc
Confidence 6899999999999999999987653 11122222211 112222 33 35789999995432 122
Q ss_pred HhcccCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc----ccCC-hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECP-KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~----~~~~-~~~ 169 (352)
....+.++|++++|+|++++-|-. ...++..+... +..+ |++||.||+|+... ......+. .... ...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~ 141 (177)
T d1kmqa_ 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNV--PIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 141 (177)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred chhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCC--ceEEeeecccccch--hhHHHHHHHhhcccccHHHH
Confidence 344567899999999998433222 22334444443 3333 99999999999765 32222111 0001 112
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+....+...++ .+||+++.|+.++++.+.+.+
T Consensus 142 ~~~a~~~~~~~~~-----E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 142 RDMANRIGAFGYM-----ECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp HHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 3344444433332 578899999999999877654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=4.4e-16 Score=124.02 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc---cccc------CC------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKAS------AG------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~---~~~~------~~------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
+.++|+++|+.++|||||+++|+.... .... .. ..++|.......+.+ ++..++++||||..+.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 80 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence 358999999999999999999963210 0000 00 013455555666666 8899999999996653
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
..++... ...+|++++|+|+.+.+..+....+..+... |-. ++++++||+|..+. .+.+++...
T Consensus 81 -------~~~~~~~----~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi~---~iiv~iNK~D~~~~-~~~~~~~~~ 144 (204)
T d2c78a3 81 -------IKNMITG----AAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFMNKVDMVDD-PELLDLVEM 144 (204)
T ss_dssp -------HHHHHHH----HTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCCC-HHHHHHHHH
T ss_pred -------HHHHHHH----HHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEEecccCCC-HHHHHHHHH
Confidence 3333333 3478999999999989999988888888775 421 57788999998754 133555555
Q ss_pred ccCChhHHHHHHh
Q 018636 163 HECPKPLKEILQL 175 (352)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (352)
. ++.++..
T Consensus 145 ~-----i~~~l~~ 152 (204)
T d2c78a3 145 E-----VRDLLNQ 152 (204)
T ss_dssp H-----HHHHHHH
T ss_pred H-----HHHHHHh
Confidence 4 5555544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=9.1e-16 Score=120.31 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
..|+|+|.+|+|||||+|+|+|..... .+....|+..........+...+.++|++|..... ..............
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS 81 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee--eccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence 479999999999999999999987532 22333444444444444467777789999975421 11111111111122
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
....+++++++.+.. ............+... . .|.++++|++|..... ..+... ...+....+..
T Consensus 82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~-~----~~~i~v~~k~d~~~~~-~~~~~~--------~~~~~~~~~~~ 146 (179)
T d1egaa1 82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLREG-K----APVILAVNKVDNVQEK-ADLLPH--------LQFLASQMNFL 146 (179)
T ss_dssp CCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS-S----SCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSCCS
T ss_pred chhhcceeEEEEecC-ccchhHHHHHHHhhhc-c----Cceeeeeeeeeccchh-hhhhhH--------hhhhhhhcCCC
Confidence 234678888888877 4444444443333322 1 2789999999987551 122222 22233333322
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
- ..++||+++.|+++|++.|.+.+++.
T Consensus 147 ~-----~~~vSA~~g~gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 147 D-----IVPISAETGLNVDTIAAIVRKHLPEA 173 (179)
T ss_dssp E-----EEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred C-----EEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence 2 23578999999999999998887663
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=8.4e-16 Score=120.06 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
++|+|+|.+|||||||++.+++...... ..+ +.............+ ...+.++||+|... .....
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~ 69 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKA-TIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLG 69 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT-C----CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCc-cCc-ccccceeeeeeeecCcccccceeeccCCchh-----------hhhHH
Confidence 6899999999999999999987653111 111 111111111111112 23567899999433 22233
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..++++++|+|.++..+-.. ..++..+....... ...|++++.||+|+.......-.+. ...+..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~--------~~~~~~ 141 (175)
T d1ky3a_ 70 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQELAK 141 (175)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HHHHHH
T ss_pred HHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHH--------HHHHHH
Confidence 445678999999999984433222 23444444333211 1238999999999864310011111 223334
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+...++ ++||+++.|++++++.+.+.+
T Consensus 142 ~~~~~~~~-----e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 142 SLGDIPLF-----LTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp HTTSCCEE-----EEBTTTTBSHHHHHHHHHHHH
T ss_pred HcCCCeEE-----EEeCCCCcCHHHHHHHHHHHH
Confidence 44322222 568889999999998876543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.9e-16 Score=119.57 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|||||||++.+++... .... ..+.+.......... ++ ..+.++||+|.... ....
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~ 66 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSF-DNTY-QATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERF-----------RSLI 66 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC-CSSC-CCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGG-----------GGGH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCC-CCcc-ccceeeeccceeecc-CCCceeeeecccCCcchh-----------ccch
Confidence 3799999999999999999987653 1111 111222222222222 33 35689999995442 1122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..++++++|+|.+++.+-.. ..++..+....+..+ |+++|.||+|+........++ ...+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~ 135 (164)
T d1yzqa1 67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAKEL 135 (164)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhhhhhhhHHH---------HHHHHHHc
Confidence 234468899999999984433322 334444444444444 899999999986441112221 22334444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..|+ .+||+++.++.++++.|.+.+
T Consensus 136 ~~~~~------e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 136 NVMFI------ETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHS
T ss_pred CCEEE------EecCCCCcCHHHHHHHHHHhh
Confidence 44443 578899999999999987765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.1e-15 Score=118.17 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|+|||||++.+++...... ...+.+.......... ++. .+.++||||..... . ..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~--------~---~~ 70 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR--------A---VT 70 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSS--CTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC--------H---HH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccccceeEEEEE-CCEEEEEEEeccCCchhHH--------H---HH
Confidence 6899999999999999999987653111 1112222222233333 443 66889999954321 1 11
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+++++.-+-.. ..++..+........ |++++.||+|+........++ ...+....
T Consensus 71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (166)
T d1z0fa1 71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIILIGNKADLEAQRDVTYEE---------AKQFAEEN 139 (166)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccc--eEEEEcccccchhhcccHHHH---------HHHHHHHc
Confidence 122357899999999983322211 234444444433333 888899999976441111111 22344444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+..|+ .+||+++.++.++++.+.+.
T Consensus 140 ~~~~~------e~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 140 GLLFL------EASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 44444 47889999999998877654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8.7e-16 Score=118.85 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|..|||||||+|.+++... +.....+....+.......+ ..+.++|++|.... ...
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~~~--- 67 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAM--- 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC----CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG--------HHH---
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC----CCccCCccceeeccceeeeceeeeeeeeeccCcccc--------ccc---
Confidence 36899999999999999999987654 12112222222211111133 35678999996542 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.+++++++|++.+++-+-.. ..++..+....+. ...|+++|.||+|+... ....+. ...+...
T Consensus 68 ~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (166)
T d1ctqa_ 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVESRQ--------AQDLARS 136 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred hhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEecccccccc--cccHHH--------HHHHHHH
Confidence 1122346799999999984433222 2344445544332 12389999999998654 221221 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..|+ .+||+++.++.+++..+.+.+.+
T Consensus 137 ~~~~~~------e~Sak~g~gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 137 YGIPYI------ETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hCCeEE------EEcCCCCcCHHHHHHHHHHHHHh
Confidence 344444 56889999999999988776643
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.6e-15 Score=115.47 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=97.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
|+....+|+|+|..|||||||++.+++... .....+ .........+.+ ++. .+.++||+|.........
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f-~~~~~~--t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~----- 72 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDP--TIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE----- 72 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCC-Cccccc--ccccceeeEecc-CCeeeeeeccccccccccccccc-----
Confidence 344568999999999999999999886543 111111 111222223333 444 457799999776432211
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhh-cccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
..+.++|++++|+|+++.-+-... .++..+.... ...+ |++||.||+|+........+ . ..
T Consensus 73 ------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~--p~ilvgnK~Dl~~~~~~~~~-~--------~~ 135 (173)
T d2fn4a1 73 ------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--PVVLVGNKADLESQRQVPRS-E--------AS 135 (173)
T ss_dssp ------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCC--CEEEEEECGGGGGGCCSCHH-H--------HH
T ss_pred ------hhhccceeeeeecccccccccchhhhhhHHHHHHhccCCC--ceEEEEEeechhhccccchh-h--------hh
Confidence 122467999999999843333222 3334343332 2233 89999999997643101111 1 22
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+....+..|+ .+||+++.+++++++.+.+.+..
T Consensus 136 ~~~~~~~~~~~------e~Sak~g~gv~e~f~~l~~~i~k 169 (173)
T d2fn4a1 136 AFGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK 169 (173)
T ss_dssp HHHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEE------EEeCCCCcCHHHHHHHHHHHHHH
Confidence 33344344443 46889999999999988877644
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=9.5e-16 Score=119.27 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|||||||++.+++... ......|....+......++. .+.++||+|..... ..
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f----~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~--- 66 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTF----RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AM--- 66 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC----CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HH---
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC----CCccCcceeeccccceeeccccceecccccccccccc--------cc---
Confidence 47999999999999999999987653 111222332222222222444 45679999966521 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+|++++-+-.. ..++..+....+.....|++||.||+|+... ..+ .+. ...+..
T Consensus 67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--~~v~~~e--------~~~~~~ 136 (171)
T d2erxa1 67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSSE--------AEALAR 136 (171)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHHH--------HHHHHH
T ss_pred ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc--ccccHHH--------HHHHHH
Confidence 1122346799999999983322222 2334444443332233489999999998643 111 111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..|+ .+||+++.+++++++.+.+++
T Consensus 137 ~~~~~~~------e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 137 TWKCAFM------ETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence 3344443 468899999999998877654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=1.5e-15 Score=120.49 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|..|||||||++.+++... ..... .+.........+.+.. ...+.+|||||....... ..
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~-~~~~~-~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~-----------~~ 73 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTY-TNDYI-STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI-----------TS 73 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CTTCC-CSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------CG
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCC-CCCcC-CccceeEEEEEEEEeeEEEEEEEEECCCchhhHHH-----------HH
Confidence 6899999999999999999886553 11111 1112222222333311 336678999996553211 22
Q ss_pred cccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|.+.+-+..... ++..+........ |+++|.||.|.........++ ........+
T Consensus 74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 142 (194)
T d2bcgy1 74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV--LKLLVGNKCDLKDKRVVEYDV---------AKEFADANK 142 (194)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHHH---------HHHHHHHTT
T ss_pred HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCc--eEEEEEeccccccccchhHHH---------HhhhhhccC
Confidence 3457899999999998433333322 3333333333333 899999999987651111221 122233334
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..|+ .+||.++.++.++++.+.+.+..
T Consensus 143 ~~~~------e~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 143 MPFL------ETSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp CCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cceE------EEecCcCccHHHHHHHHHHHHHH
Confidence 4443 46888999999999887765543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-15 Score=119.22 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|||||||++.+++...... .. .+.+.......+.. ++ ..+.++||+|..+.....
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~----------- 70 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLE-SK-STIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------- 70 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCc-cc-ccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHH-----------
Confidence 6899999999999999999887653111 11 11222222333333 43 366799999954322111
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..++++++|+|.+++-+-. ...++..+.......+ |+++|.||+|+........+ . ........
T Consensus 71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~~~~~~~~-~--------~~~~~~~~ 139 (175)
T d2f9la1 71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRHLRAVPTD-E--------ARAFAEKN 139 (175)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHHT
T ss_pred HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeecccccccchHH-H--------HHHhhccc
Confidence 11235789999999998332222 2334555555555444 89999999998744111111 1 12233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+..|+ .+||.++.++.++++.+...
T Consensus 140 ~~~~~------e~Sa~~g~~i~e~f~~l~~~ 164 (175)
T d2f9la1 140 NLSFI------ETSALDSTNVEEAFKNILTE 164 (175)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred CceEE------EEecCCCcCHHHHHHHHHHH
Confidence 44444 46888899999998766554
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.8e-15 Score=115.27 Aligned_cols=158 Identities=19% Similarity=0.176 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|..|||||||++.+++.... .....|.... ...... ++ ..+.+||++|.... ...
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~----~~~~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~--------~~~-- 67 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFI----EKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF--------ASM-- 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHH--
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCC----CccCCceeeeeeeeeec-CcceEeeccccCCCcccc--------ccc--
Confidence 479999999999999999999876531 1112222221 122222 43 35678999996542 111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+.+++++++|+|++++-+-... .++..+..... ....|++||.||+|+........++ ...+..
T Consensus 68 -~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~---------~~~~~~ 136 (167)
T d1kaoa_ 68 -RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSE---------GRALAE 136 (167)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred -hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccchHHH---------HHHHHH
Confidence 11223577999999999843333222 23233332222 1223899999999986431111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..|+ .+||+++.++.++++.+.+.+
T Consensus 137 ~~~~~~~------e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 137 EWGCPFM------ETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp HHTSCEE------EECTTCHHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EECCCCCcCHHHHHHHHHHHH
Confidence 3344443 568899999999998876654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=7.5e-16 Score=118.95 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
++|+|+|.+|+|||||+|.+++... .... ..+............ ++ ..+.++||+|.........
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~-~~~~-~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~---------- 69 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIF-TKDY-KKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITK---------- 69 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCCS-SCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Cccc-ccccccccceeeeee-cCceeeeeeeccCCccchhhhhh----------
Confidence 7899999999999999999886543 1111 111111122222222 33 3568999999665332221
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~~ 175 (352)
..+.+++++++|+|++++-+-.. ..++..+....+. . |+++|.||+|+... ..+ .+. ...+...
T Consensus 70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~--~iilVgnK~Dl~~~--~~v~~~~--------~~~~~~~ 135 (164)
T d1z2aa1 70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-I--PTALVQNKIDLLDD--SCIKNEE--------AEGLAKR 135 (164)
T ss_dssp -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS-C--CEEEEEECGGGGGG--CSSCHHH--------HHHHHHH
T ss_pred -hhhccCceEEEEEeccchhhhhhcccccccccccCCC-c--eEEEeeccCCcccc--eeeeehh--------hHHHHHH
Confidence 12368899999999984333222 2344555554443 2 89999999998654 211 111 2223344
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+..|+ .+||+++.++.++++.+.+.
T Consensus 136 ~~~~~~------e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 136 LKLRFY------RTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHH
T ss_pred cCCEEE------EeccCCCcCHHHHHHHHHHH
Confidence 444443 56889999999999877554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.1e-16 Score=120.64 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+||+|+|..|+|||||++.|++.... ... ....+.......+.+.. ...+.++||||....... ..
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 74 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFD-PEL-AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------TP 74 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTC-CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------HH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC-Ccc-ccceeecceeEEEEEeccccEEEEEECCCchhhHHH-----------HH
Confidence 79999999999999999999876541 111 11222222333333311 346789999996543211 11
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+.++|++++|++++++.+... ..++..+... ......+++++.||.|.... ....+. ...+....+
T Consensus 75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~--~v~~~~--------~~~~~~~~~ 143 (177)
T d1x3sa1 75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARKHS 143 (177)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHHTT
T ss_pred HHHhcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccccc--cccHHH--------HHHHHHHCC
Confidence 23368899999999873222211 1222223222 22223488899999997754 221111 222344444
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..|+ .+||.++.|+.++++.+.+.+..
T Consensus 144 ~~~~------e~Sa~tg~gv~e~f~~l~~~l~~ 170 (177)
T d1x3sa1 144 MLFI------EASAKTCDGVQCAFEELVEKIIQ 170 (177)
T ss_dssp CEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHHHHcc
Confidence 4443 46888999999999987765544
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.8e-15 Score=115.26 Aligned_cols=156 Identities=16% Similarity=0.152 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|..|||||||++.+.+... ......|.. ........ ++ ..+.++||+|.... ..
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f----~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~-----------~~ 67 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKF----NDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------HA 67 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC----CSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC----Ccccccccccchheeeecc-CCccceeeeeccCCccee-----------cc
Confidence 6899999999999999999886553 111222222 22222222 32 46679999995542 22
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++-+-.. ..++..+........ ++++|.||+|+.....-..++ ...+..
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~~ilvgnK~Dl~~~~~v~~~e---------~~~~a~ 136 (167)
T d1z08a1 68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKERHVSIQE---------AESYAE 136 (167)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred cchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccccccc--ceeeeccccccccccccchHH---------HHHHHH
Confidence 23445678999999999984333222 233444443333332 788889999986541011111 233444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+-.|+ .+||+++.++.+++..+.+.+
T Consensus 137 ~~~~~~~------e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 137 SVGAKHY------HTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp HTTCEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred HcCCeEE------EEecCCCcCHHHHHHHHHHHH
Confidence 4444443 468889999999998877654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=1.1e-15 Score=118.42 Aligned_cols=158 Identities=20% Similarity=0.126 Sum_probs=93.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe-eC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|..|||||||++.|.+..... ....|.......... .+ ...+.++||+|..... .
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----------~ 68 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDP----NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------A 68 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT----TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------G
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCc----ccccccccccccccccccccccceeeeecCCchhhh-----------H
Confidence 4799999999999999999998665411 111222222222111 12 2345689999955421 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.+++++++|+|++++-+-... .++..+....... .|+++|.||+|+.... ....+. ...+..
T Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~-~v~~~~--------~~~~~~ 137 (167)
T d1z0ja1 69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVR-EVMERD--------AKDYAD 137 (167)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGC-CSCHHH--------HHHHHH
T ss_pred HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhcccc-chhHHH--------HHHHHH
Confidence 122234688999999998833222222 2333334333333 3899999999986431 111111 233444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..|+ .+||+++.++++++..|.+.+
T Consensus 138 ~~~~~~~------e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 138 SIHAIFV------ETSAKNAININELFIEISRRI 165 (167)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred HcCCEEE------EEecCCCCCHHHHHHHHHHhC
Confidence 4454443 578899999999999876654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.7e-15 Score=116.99 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|||||||++.+.+... ..... .+.........+.. + ...+.+|||||... +....
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~-~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 71 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKF-KDDSN-HTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSVT 71 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CTTCC-CCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Ccccc-cccccceeeEEEEe-cCcceeEEEEECCCchh-----------hhhhH
Confidence 6899999999999999999986543 11111 11112222222222 2 23567999999432 22233
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..++++++|+|.++.-+-.. ..++..+........ |+++|.||+|+.... ....+. ...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piivv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 140 (174)
T d2bmea1 72 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI--VIILCGNKKDLDADR-EVTFLE--------ASRFAQEN 140 (174)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGC-CSCHHH--------HHHHHHHT
T ss_pred HHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCce--EEEEEEecccccchh-chhhhH--------HHHHHHhC
Confidence 445678999999999983222221 223333333333333 999999999975431 111111 12233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+-.|+ .+||+++.++++++..+.+.+
T Consensus 141 ~~~~~------e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 141 ELMFL------ETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEE------EeeCCCCcCHHHHHHHHHHHH
Confidence 33443 468888999999998776543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=2.4e-15 Score=117.11 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|||||||++.|++... .. ....+.+.......+.. ++ ..+.++||||... +....
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~-----------~~~~~ 72 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAF-NS-TFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTIT 72 (173)
T ss_dssp EEEEEECCCCC------------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CC-ccCccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 6899999999999999999987553 11 11111222333334444 44 3557799999443 22223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++.+-... .++..+........ |+++|.||.|.........++ ........
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~~k~D~~~~~~~~~~~---------~~~~~~~~ 141 (173)
T d2fu5c1 73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV--EKMILGNKCDVNDKRQVSKER---------GEKLALDY 141 (173)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEEC--CCSCCCSCHHH---------HHHHHHHH
T ss_pred HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCc--eEEEEEecccchhhcccHHHH---------HHHHHHhc
Confidence 3456789999999999844433332 23344443333333 899999999987651122221 11223333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..|+ .+|+.++.++.++++.+.+.+
T Consensus 142 ~~~~~------e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 142 GIKFM------ETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp TCEEE------ECCC---CCHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 44544 468888999999998876655
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.61 E-value=9.3e-15 Score=114.20 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|||||||++.|.+.......+..+ ........ .+..+.++|++|...... ..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~d~~~~~~~~~-----------~~ 76 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-----SNVEEIVI-NNTRFLMWDIGGQESLRS-----------SW 76 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-----SSCEEEEE-TTEEEEEEECCC----CG-----------GG
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccc-----eeEEEEee-cceEEEEecccccccccc-----------ch
Confidence 34899999999999999999999877533322222 11222222 567888999998554321 11
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.......++++++++.++.-+....................|+++|.||+|+... ....+.... +. +.....
T Consensus 77 ~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~-----~~-~~~~~~ 148 (177)
T d1zj6a1 77 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQF-----LK-LTSIKD 148 (177)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT-GGGCCS
T ss_pred hhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHH-----HH-HHhhHh
Confidence 1223578999999998844443332221111111111223399999999998765 333322111 10 001111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+ .++||+++.|+.++++++.+.+
T Consensus 149 ~~~~~----~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 149 HQWHI----QACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp SCEEE----EECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCEE----EEEeCCCCCCHHHHHHHHHHHh
Confidence 11111 2578999999999999988765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-15 Score=118.47 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE--EEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|..|||||||++.+++... .. ....|...... .... . ...+.++||+|.... ..
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f-~~---~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~-----------~~ 70 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQF-HE---FQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERY-----------HS 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CT---TCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Cc---ccccccccccccceeec-cceEEEEEeccCCCchhh-----------hh
Confidence 6899999999999999999986553 11 11122222222 2222 2 235678999995432 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.+++++++|+|.++.-+-.. ..+...+.......+ |++||.||+|+........+ . ...+..
T Consensus 71 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~v~~e-~--------~~~~~~ 139 (170)
T d1r2qa_ 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQ-E--------AQSYAD 139 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHH-H--------HHHHHH
T ss_pred hHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeecccccccccccccHH-H--------HHHHHH
Confidence 12223468999999999883333222 234444444444444 89999999997644111111 1 223334
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..|+ .+||+++.++.+++..+.+.+
T Consensus 140 ~~~~~~~------e~SAk~g~~V~e~f~~l~~~i 167 (170)
T d1r2qa_ 140 DNSLLFM------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHTS
T ss_pred hcCCEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 4444444 478899999999999886654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.8e-15 Score=114.66 Aligned_cols=160 Identities=23% Similarity=0.190 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|||||||++.+++... .. ....|. ......+.+ ++ ..+.++||+|...... .
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~--------~-- 69 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYF-VT---DYDPTIEDSYTKQCVI-DDRAARLDILDTAGQEEFGA--------M-- 69 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CS---SCCTTCCEEEEEEEEE-TTEEEEEEEEECC----CCH--------H--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCcccccceeeeeee-cccccccccccccccccccc--------c--
Confidence 47999999999999999999886543 11 111122 122222233 43 3568999999765321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|.+++-+-... .++..+...... ...|++||.||+|+........++ ...+..
T Consensus 70 -~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~~~---------~~~~~~ 138 (171)
T d2erya1 70 -REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQRQVTQEE---------GQQLAR 138 (171)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTSCSSCHHH---------HHHHHH
T ss_pred -ccccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhhccchHHH---------HHHHHH
Confidence 11122467999999998843232222 233333332221 123889999999986441011111 233444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..|+ .+||+++.++.+++..+.+.+..
T Consensus 139 ~~~~~~~------e~Sak~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 139 QLKVTYM------EASAKIRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEcCCCCcCHHHHHHHHHHHHHH
Confidence 4454444 47888999999999988877643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.3e-14 Score=110.73 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|..|+|||||++.+++... ......|....+ ..+.+ ++. .+.++||+|........
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~~--------- 69 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFP--------- 69 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC----CSCCCSSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCC---------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC----CcccCcceecccceEEec-CcEEEEeeeccccccccccccc---------
Confidence 47999999999999999999876543 111122222221 22233 443 45789999976543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..+|++++|+|++++-+-... .++..+...++. ...|+++|.||+|+.....-..++ ...+..
T Consensus 70 --~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~r~v~~~~---------~~~~a~ 137 (167)
T d1xtqa1 70 --QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEE---------GKALAE 137 (167)
T ss_dssp --GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred --chhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc-cccceeeeccccccccccchhHHH---------HHHHHH
Confidence 2345689999999999843332222 234444444432 123899999999986430011121 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+..|+ .+||+++.++.++++.+...
T Consensus 138 ~~~~~~~------e~Sak~~~~v~~~f~~li~~ 164 (167)
T d1xtqa1 138 SWNAAFL------ESSAKENQTAVDVFRRIILE 164 (167)
T ss_dssp HHTCEEE------ECCTTCHHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEecCCCCCHHHHHHHHHHH
Confidence 3344444 46899999999999876544
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.1e-15 Score=118.74 Aligned_cols=162 Identities=18% Similarity=0.098 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
-.+|+|+|..|||||||++.++.... ... ...|... ....+.. .+ ..+.+|||+|......
T Consensus 9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~---~~~Ti~~~~~~~~~~-~~~~~~l~i~D~~g~e~~~~----------- 72 (185)
T d2atxa1 9 MLKCVVVGDGAVGKTCLLMSYANDAF-PEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR----------- 72 (185)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCS---CCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHhhCCC-CCc---CCCceeeeeeEEEee-CCceEEeecccccccchhhh-----------
Confidence 47999999999999999999886543 221 1112211 1122222 33 3467999999654321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC-----hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~-----~~ 168 (352)
.....+.++|++++|+|++++-+-.. ..++..+... .... |+++|.||+|+... ............ ..
T Consensus 73 ~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~--~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~~~~ 147 (185)
T d2atxa1 73 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNV--PFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ 147 (185)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTC--CEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred hhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCC--CeeEeeeccccccc--hhhhhhhhhcccccccHHH
Confidence 22345678999999999984333222 2333444433 3333 89999999998865 322222111000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...+....+. .|+ .+||+++.++.++++.+.+.
T Consensus 148 ~~~~a~~~~~~~~~------E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 148 GQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp HHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE------EecCCCCcCHHHHHHHHHHH
Confidence 2233333342 333 46889999999999876554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.61 E-value=3.8e-15 Score=114.36 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|++|||||||+|.|++...... .. +.......... ....+.++|+||.... .. ....
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~----~~-~~~~~~~~~~~-~~~~~~~~d~~g~~~~--------~~---~~~~ 63 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTT----IP-TIGFNVETVEY-KNISFTVWDVGGQDKI--------RP---LWRH 63 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC----CC-CSSCCEEEEEC-SSCEEEEEECCCCGGG--------HH---HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc----cc-ceeeEEEEEee-eeEEEEEecCCCcccc--------hh---hhhh
Confidence 4899999999999999999987664111 11 11111222222 5677889999996542 11 1222
Q ss_pred ccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.+...++++++++..++.+.... .+...+..... ...|++++.||.|.... ....+.... . ....+.
T Consensus 64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~k~d~~~~--~~~~~i~~~-----~--~~~~~~ 132 (160)
T d1r8sa_ 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEITDK-----L--GLHSLR 132 (160)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHHHH-----T--TGGGCS
T ss_pred hhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcc--cCceEEEEeeccccccc--ccHHHHHHH-----H--HHHHHh
Confidence 34678999999998844333222 12222222211 22388899999998765 222222111 0 001111
Q ss_pred -CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 -~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+. ..++||+++.|+.+++++|.+
T Consensus 133 ~~~~~----~~~~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 133 HRNWY----IQATCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp SCCEE----EEECBTTTTBTHHHHHHHHHH
T ss_pred hCCCE----EEEeECCCCCCHHHHHHHHHh
Confidence 1111 136799999999999998765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.3e-15 Score=117.84 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++...... ...+.+.......+.. ++. .+.+|||||....... .
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 68 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------T 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCc--cCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------H
Confidence 6899999999999999999987653111 1112222333333433 333 4568999995432211 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.+++++++|+|.+++-+..... +.......... ..+++++.||.|.... ....+... .+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~--~~~~~~~~--------~~~~~~ 136 (166)
T d1g16a_ 69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTADQGE--------ALAKEL 136 (166)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHHHHH--------HHHHHH
T ss_pred HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh--hhhHHHHH--------HHHHhc
Confidence 12346899999999998432222222 22222322222 2378888999998765 33333222 233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..|+ ++|+.++.++.++++.+.+.+.+
T Consensus 137 ~~~~~------~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 137 GIPFI------ESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp TCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEE------EECCCCCCCHHHHHHHHHHHHHh
Confidence 44444 46888999999999988776643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.2e-14 Score=112.77 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|||||||++.+++...... ....+.........+.. .+. .+.+|||||... +....
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~ 73 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSVT 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccceeeeeeEEEEEEe-cCcEEEEEEEECCCchh-----------hHHHH
Confidence 6899999999999999998876543111 11111122222222333 443 568999999543 22223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|.+++-+-... .++..+....... .|++++.||+|.........++ ...+....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~~~v~~~~---------~~~~~~~~ 142 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAKEY 142 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHHHH
T ss_pred HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhcccccHHH---------HHHHHHHc
Confidence 3455688999999998733222221 2222233333332 3889999999987651111111 22233444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..|+ .+||+++.++.++++.+.+.+
T Consensus 143 ~~~~~------e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 143 GLPFM------ETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp TCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHc
Confidence 54554 468888999999998877654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.3e-15 Score=117.25 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|||.+|||||||++.+++...... ... +.+............ ...+.++|++|........ .
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------~ 70 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDL-TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT-----------R 70 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC-----------H
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCC-ccc-ceeeccceeeeeeeeeEEEEEeecccCccchhhHH-----------H
Confidence 5899999999999999999886653111 111 112222222222311 3466899999966533211 1
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|++++-+-.. ..++..+....+.++ |++||.||+|.........+ . ...+....+
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~~~~~~~-~--------~~~~a~~~~ 139 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRDVKRE-E--------GEAFAREHG 139 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHHHT
T ss_pred HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhhhhhhHHH-H--------HHHHHHHcC
Confidence 23357899999999984333222 234445555444444 89999999997643111111 1 222333334
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..|+ .+||+++.++.+++..+.+.+
T Consensus 140 ~~~~------e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 140 LIFM------ETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp CEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred CEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 4443 478899999999988776643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.59 E-value=1.2e-14 Score=112.50 Aligned_cols=157 Identities=22% Similarity=0.216 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|..|||||||++.+++... .. ....|....+ ..+.+ ++. .+.++|++|.... ..+.
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f-~~---~~~~T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~--------~~~~-- 69 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEF-VE---DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR-- 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--------HHHH--
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-Cc---ccCCcccccccccccc-ccccccccccccccccch--------hhhh--
Confidence 6999999999999999999876543 11 1112222221 12223 443 5678999996542 1111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|.++.-+-... .++..+..... ....|+++|.||+|+.....-..++ ...+...
T Consensus 70 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~~~~v~~~~---------~~~~~~~ 138 (168)
T d1u8za_ 70 -DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRADQ 138 (168)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred -hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccccccccHHH---------HHHHHHH
Confidence 1223467999999998843333222 34444444332 1223899999999975431011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..|+ ++||+++.+++++++.+.+-+
T Consensus 139 ~~~~~~------e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 139 WNVNYV------ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp HTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence 344443 468899999999998766544
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.5e-14 Score=110.61 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.++|+|||..|+|||||++.+.+... +.....|....+......++ ..+.+|||+|..... ..
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f----~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~--- 66 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRF----IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI--------QR--- 66 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH--------HH---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC----CCccCCceeccccccccccccceEEEEeecccccccc--------cc---
Confidence 37999999999999999999987553 12222233333322222244 356789999965421 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHH-HHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.+++++++|+|++++-+-..... ......... ....|+++|.||+|+.....-..++ ...+...
T Consensus 67 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e---------~~~~a~~ 135 (168)
T d2atva1 67 -EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKLATE 135 (168)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred -hhhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHH---------HHHHHHH
Confidence 112346799999999984433333322 222222221 1223999999999986430011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchH-HHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~ 208 (352)
.+..|+ .+||+++. ++.+++..+.+.+
T Consensus 136 ~~~~~~------e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 136 LACAFY------ECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp HTSEEE------ECCTTTCTTCHHHHHHHHHHHH
T ss_pred hCCeEE------EEccccCCcCHHHHHHHHHHHH
Confidence 344444 46778787 4999988766544
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-14 Score=114.35 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeC-----------CceEEEEeCCCCCCCCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~lvDtpG~~~~~~~~ 86 (352)
.+|+|+|.+|||||||++.|++... ......+.... ...+.+.. ...+.++||+|
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G-------- 73 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKF----NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG-------- 73 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC----CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCC----CCccCCcccceeeEEEEEEecccccccccccceEEeccccCCc--------
Confidence 6899999999999999999997653 11111121111 11111111 23578999999
Q ss_pred HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhccc
Q 018636 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~ 164 (352)
.+.+.......+.+++++++|+|+++..+-.. ...++...... ....|++||.||.|+... ..+..
T Consensus 74 ---~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~----- 141 (186)
T d2f7sa1 74 ---QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE----- 141 (186)
T ss_dssp ---HHHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH-----
T ss_pred ---chhhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhh--hcchH-----
Confidence 34444444445678999999999883222211 11222222211 112378899999998643 11110
Q ss_pred CChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.....+....+..|+ .+||+++.++.++++.+.+.+
T Consensus 142 --~e~~~~~~~~~~~~~------e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 142 --RQARELADKYGIPYF------ETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp --HHHHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 012334444454444 568888999999999887765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.4e-15 Score=116.19 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.++|+|+|..|||||||++.+++... .. ....|... ....+.. ++ ..+.++|++|.... ..
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f-~~---~~~~ti~~~~~~~~~~-~~~~~~~~~~d~~g~~~~-----------~~ 68 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DR 68 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CS---SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccccceeeceeeeeec-cCcceEEEeecccccccc-----------hh
Confidence 48999999999999999999987653 11 11112221 1122222 33 34578999985432 12
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcc-c--CC-hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGH-E--CP-KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~-~--~~-~~ 168 (352)
....++.++|++++|+|++++-+-... .++..+... ...+ |++||.||+|+... ... ++.... . .. ..
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 143 (183)
T d1mh1a_ 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNT--PIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 143 (183)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCC--cEEEEeecccchhh--hhhhhhhhhccccchhhHH
Confidence 233456789999999999843332222 234444433 3333 99999999997654 222 111110 0 00 01
Q ss_pred HHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+....+...++ .+||+++.++.++++.+.+.+
T Consensus 144 ~~~~a~~~~~~~~~-----E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 144 GLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp HHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceEE-----EcCCCCCcCHHHHHHHHHHHH
Confidence 12233333332232 578899999999998877654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.5e-14 Score=114.49 Aligned_cols=163 Identities=18% Similarity=0.126 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.++|+|+|..|+|||||++.+.+... .. ....|..... ..... ++ ..+.+|||+|.... ..
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~ 66 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKF-PS---EYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DR 66 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CS---SCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------TT
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-CC---CcCCceeeecceeEee-CCceeeeeccccccchhh-----------hh
Confidence 37999999999999999999986553 11 1112222222 22222 33 35788999995442 22
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC----C-hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----P-KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~----~-~~ 168 (352)
.....+.++|++++|+|++++-|-... .++..+.. ..... |+++|.||+|+... ....+.+.... . ..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~--~i~lvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 141 (191)
T d2ngra_ 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKT--PFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPET 141 (191)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTC--CEEEEEECGGGGGC--HHHHHHHHTTTCCCCCHHH
T ss_pred hhhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cCCCC--ceEEEecccccccc--chhhhhhhhcccccccHHH
Confidence 234456789999999999844332222 23333333 33333 89999999998754 22211111100 0 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+....++ .|+ .+||+++.+++++++.+...+
T Consensus 142 ~~~~~~~~~~~~~~------e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 142 AEKLARDLKAVKYV------ECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp HHHHHHHTTCSCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 2233333333 333 468889999999998776654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.3e-14 Score=109.20 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
-.+|+|+|..|+|||||++.+.+... +...+... ........+.+ ++. .+.++|+++... .+++
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~~~~d~~~~~g--------~e~~-- 69 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL--GEDTYERTLMV-DGESATIILLDMWENKG--------ENEW-- 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---C--CTTEEEEEEEE-TTEEEEEEEECCTTTTH--------HHHH--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccce--eeecceeeecc-CCceeeeeeeccccccc--------cccc--
Confidence 47999999999999999999987643 11111111 11111222233 333 457889886322 1222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++.++|++++|+|++++-+-... .++..+....+ ....|+++|.||+|+.....-..++ ...+..
T Consensus 70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~a~ 139 (172)
T d2g3ya1 70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACAV 139 (172)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred cccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHH---------HHHHHH
Confidence 123456789999999999843332222 22222322211 1123899999999986431011221 122333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..|+ .+||+++.+++++++.+.+.+.
T Consensus 140 ~~~~~~~------e~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 140 VFDCKFI------ETSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCcCHHHHHHHHHHHHH
Confidence 3343443 4688899999999988776553
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.2e-14 Score=114.35 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|||||||++.+++... ......|.. ......... ....+.++||+|.......
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------- 67 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKF----SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------- 67 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC----CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-----------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC----CCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc-----------
Confidence 5899999999999999999987653 111112222 222222221 1346678999996553221
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|.++.-+... ..++..+....... ...|+++|.||+|+... ....+. ...+.
T Consensus 68 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~--------~~~~~ 137 (184)
T d1vg8a_ 68 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWC 137 (184)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHH
T ss_pred ccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHH--------HHHHH
Confidence 1223467899999999873222222 23343343332211 12289999999998654 222211 11222
Q ss_pred Hhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
... +..|+ .+||+++.|+.++++.+.+.
T Consensus 138 ~~~~~~~~~------e~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 138 YSKNNIPYF------ETSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp HHTTSCCEE------ECBTTTTBSHHHHHHHHHHH
T ss_pred HHhcCCeEE------EEcCCCCcCHHHHHHHHHHH
Confidence 222 22333 46888999999999876554
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.57 E-value=4.6e-14 Score=109.13 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|||.+|||||||+|.+++...... ..+.......... ++..+.++|++|..... ....
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~ 67 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYWR 67 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccccc-----------ccch
Confidence 48999999999999999999998765221 1232222333333 67788899999865421 1122
Q ss_pred cccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+...++++++++.....+..... .+...... ......+++++.||.|+... ....+.... +. .....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~-----~~--~~~~~ 137 (169)
T d1upta_ 68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPALK 137 (169)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGCT
T ss_pred hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccc--ccHHHHHHH-----HH--HHHHh
Confidence 3345778999999887333332222 22222211 11122388899999999865 333332221 11 01111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+. ..++||.++.+++++++.+.+.+..
T Consensus 138 ~~~~~---~~~~SA~~g~gv~e~~~~l~~~l~~ 167 (169)
T d1upta_ 138 DRKWQ---IFKTSATKGTGLDEAMEWLVETLKS 167 (169)
T ss_dssp TSCEE---EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCE---EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11111 1267899999999999998776643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.57 E-value=2.4e-14 Score=114.99 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccc--------------cc-----------------CCCCCcceeeEeEEEEe
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS-----------------AGSSGVTKTCEMKTTVL 65 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~-----------------~~~~~~t~~~~~~~~~~ 65 (352)
...++|+++|+.++|||||++.|+.....- .+ ....+.+.......+.+
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 345799999999999999999996321100 00 00011222233333444
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
.++.+.++||||..+. ...+.. ....+|++++|+++...+.......+..+..+ |-. ++++++|
T Consensus 87 -~~~~~~iiD~PGH~df-------v~~~~~----g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~vN 150 (222)
T d1zunb3 87 -AKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAIN 150 (222)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEE
T ss_pred -cceEEEEEeccchhhh-------hhhhcc----ccccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEEEE
Confidence 6789999999996553 233332 33578999999999988988888887776664 522 6899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC--cEEEEcCCCcccccchHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN--RCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sa~~~~~~~ 198 (352)
|+|..+.+....+..... +..++...+- .-+.| .+.||.++.++.
T Consensus 151 K~D~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~i~~---IPiSA~~G~ni~ 197 (222)
T d1zunb3 151 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNVV 197 (222)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTTS
T ss_pred ccccccccceehhhhHHH-----HhhhhHhhccCCCceEE---EEEEcccCccCC
Confidence 999986543445544444 5555554432 11111 356777776663
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.6e-14 Score=111.75 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|||..|||||||++.+.+... ......|...... .+... ....+.++|++|...... +
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f----~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~--- 67 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------M--- 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC----CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------H---
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC----CCccCCccccccceeEEeeeeEEEeccccccCcccccc--------c---
Confidence 46899999999999999999986653 1111222222222 12221 133568999999766321 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-... .++..+....+. ...|++||.||+|+........++ ...+...
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T d1c1ya_ 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred ccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccchhH---------HHHHHHH
Confidence 11123478999999999844332222 344434333221 123899999999987541111111 1223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+||+++.++.++++.+.+.+
T Consensus 138 ~~~~~~~-----e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 138 WCNCAFL-----ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE-----ECBTTTTBSHHHHHHHHHHHH
T ss_pred hCCCEEE-----EEcCCCCcCHHHHHHHHHHHh
Confidence 2332222 568999999999999876654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=4e-15 Score=115.53 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.++|+|+|..|+|||||++.+.+...... ...+.........+.. ++ ..+.++||+|..... ..
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~--~~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~-----------~~ 68 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcc--ccccccceeecccccc-ccccccccccccCCchhHH-----------HH
Confidence 47999999999999999999887654111 1111122222222333 33 467899999964421 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+.++|++++|+|.+++.+-.... ++..+....... .+++++.||+|+.... +....+ ....+.
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~~~~~~~~v~~~--------~~~~~~ 138 (170)
T d1ek0a_ 69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDMLQEGGERKVARE--------EGEKLA 138 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSCHH--------HHHHHH
T ss_pred HHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeecccccccccchhhhhHH--------HHHHHH
Confidence 122346889999999998544433332 222233322322 3899999999975430 011111 122344
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+..|+ .+||+++.++++++..|.+
T Consensus 139 ~~~~~~~~------e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 139 EEKGLLFF------ETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHT
T ss_pred HHcCCEEE------EecCCCCcCHHHHHHHHHH
Confidence 44455444 4688889999999987654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.3e-14 Score=110.63 Aligned_cols=158 Identities=17% Similarity=0.068 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|||||||+|.+++... .. ....+............ .+ ..+.++||+|.... ....
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~ 72 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNKF-DT-QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSLR 72 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CC-----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CC-ccccceeeeeeeeeeee-cCceeeEeeecccCccee-----------hhhh
Confidence 5899999999999999999886543 11 11111122222222233 33 34578999995431 1223
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..++++++++|.+.+.+-.. ..++..+....... ...|+++|.||+|+... ....+. ...+..
T Consensus 73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~--~v~~~~--------~~~~~~ 142 (174)
T d1wmsa_ 73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQAWCR 142 (174)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHHHHH
T ss_pred hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhc--cCcHHH--------HHHHHH
Confidence 345568899999999884333222 23444444433211 12389999999998654 211111 223333
Q ss_pred hcC-CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+ -.|+ ++||+++.++.++++.+.+.
T Consensus 143 ~~~~~~~~------e~Sak~~~gI~e~f~~l~~~ 170 (174)
T d1wmsa_ 143 DNGDYPYF------ETSAKDATNVAAAFEEAVRR 170 (174)
T ss_dssp HTTCCCEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCeEE------EEcCCCCcCHHHHHHHHHHH
Confidence 333 2333 46889999999998877554
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=2.4e-14 Score=110.85 Aligned_cols=158 Identities=23% Similarity=0.214 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|..|||||||++.+++.... . ....|.... ...+.. ++ ..+.+||++|........
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~-~---~~~~t~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~--------- 69 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFV-P---DYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMR--------- 69 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC-T---TCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSH---------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-c---ccCcceeecccccccc-ccccccccccccccccccccch---------
Confidence 489999999999999999999875431 1 111122111 122223 33 456799999976532211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++|+|++++-+-.. ..++..+.+..+. ...|++++.||+|+.....-..++ ...+..
T Consensus 70 --~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e~---------~~~~~~ 137 (169)
T d1x1ra1 70 --EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQ---------GKEMAT 137 (169)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHH---------HHHHHH
T ss_pred --hhhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehhh---------HHHHHH
Confidence 112347899999999984333222 2344444444332 123899999999987541011121 223334
Q ss_pred hcCCcEEEEcCCCcccccchH-HHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~ 208 (352)
..+..|+. +||+++. ++.+++..+.+.+
T Consensus 138 ~~~~~~~e------~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 138 KYNIPYIE------TSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp HHTCCEEE------EBCSSSCBSHHHHHHHHHHHH
T ss_pred HcCCEEEE------EcCCCCCcCHHHHHHHHHHHH
Confidence 44545553 5666665 8999998877665
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=7.2e-14 Score=109.11 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|..|||||||++.++.... . .....|.. ........ ++ ..+.+|||+|...... .
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----------~ 66 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCF-P---ENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDN-----------V 66 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-C---SSCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGTT-----------T
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-C---CccCCceeecccccccc-cceEEeeccccccccccccc-----------c
Confidence 6899999999999999998886543 1 11122222 22222233 33 3557999999543211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc---C-ChhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---C-PKPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~---~-~~~~~ 170 (352)
....+.++|++++|+|++++-|-... .+...+.. .+... |+++|.||+|+.... ....+..... . .....
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~--~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~ 142 (179)
T d1m7ba_ 67 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNT--KMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGA 142 (179)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTC--EEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHH
T ss_pred ccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCCcc--eEEEEEecccccccc-hhhHHHhhhhcCcchHHHHH
Confidence 23456789999999999843332221 22233333 33333 999999999986541 1111111100 0 01123
Q ss_pred HHHHhcCCcEEEEcCCCcccccchH-HHHHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~ 208 (352)
.+....+...++ .+||+++. ++.++++.+...+
T Consensus 143 ~~a~~~~~~~y~-----E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 143 NMAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp HHHHHHTCSEEE-----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCeEE-----EEeCCCCCcCHHHHHHHHHHHH
Confidence 344443433332 46888776 5999998776654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=7.6e-14 Score=114.82 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhh---CCCccc-------------ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSIL---GRKAFK-------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
++|+|+|+.|+|||||+.+|+ |..... .......+|.......+.| ++..++++||||+.+..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSCS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhhH
Confidence 479999999999999999985 221100 0011123455555666777 89999999999998864
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ++...+ ..+|+.++|+++.+.........++.+... +- |.++++||+|....
T Consensus 86 ~-------e~~~~l----~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-~l----P~i~fINKmDr~~a 138 (276)
T d2bv3a2 86 I-------EVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-KV----PRIAFANKMDKTGA 138 (276)
T ss_dssp T-------THHHHH----HHCCEEEEEEETTTSSCHHHHHHHHHHHTT-TC----CEEEEEECTTSTTC
T ss_pred H-------HHHHHH----HhhhheEEeccccCCcchhHHHHHHHHHHc-CC----CEEEEEeccccccc
Confidence 2 222222 356999999999989999999988888764 33 99999999999765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=8e-14 Score=107.44 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|..|||||||++.+++.......... ............. ....+.++|++|..... .....
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 70 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT--IGVDFRERAVDIDGERIKIQLWDTAGQERFR----------KSMVQ 70 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCC--CSCCEEEEEEEETTEEEEEEEEECCCSHHHH----------TTTHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCcc--cccccceeeeeeeccceEEEEEeccCchhhc----------cccce
Confidence 68999999999999999999865431111111 1111111222221 24456789999843210 01112
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhh-cccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+.++|++++|+|++++-+-... .++..+.... ...+ |++||.||+|+........++ ...+....
T Consensus 71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~--pi~lvgnK~Dl~~~~~v~~~~---------~~~~~~~~ 139 (165)
T d1z06a1 71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI--PRILVGNKCDLRSAIQVPTDL---------AQKFADTH 139 (165)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCC--CEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCC--eEEEEeccccchhccchhHHH---------HHHHHHHC
Confidence 234689999999999844333332 3444444332 2233 899999999986541011111 22344444
Q ss_pred CCcEEEEcCCCcccccc---hHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKG---TEQVRQLLSLV 204 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~---~~~~~~L~~~i 204 (352)
+..|+ .+||++ +.++.+++..+
T Consensus 140 ~~~~~------e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 140 SMPLF------ETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp TCCEE------ECCSSSGGGGSCHHHHHHHH
T ss_pred CCEEE------EEecccCCcCcCHHHHHHHh
Confidence 54554 356654 44777777654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=7.4e-14 Score=107.46 Aligned_cols=160 Identities=8% Similarity=-0.032 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
||+|+|++|||||||+|.|++..... ...|.......... .+....++|++|.... .......
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~ 64 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQA-----------RRLWKDY 64 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEECC-TTCCEEEEECCCSGGG-----------GGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEEecc-CCeeEEEEeeccchhh-----------hhhHhhh
Confidence 89999999999999999999876521 12233333333333 5667789999985432 1123334
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH---HhcccCChhHHHHHHhcC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED---FLGHECPKPLKEILQLCD 177 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~ 177 (352)
....++++++++.++..+......+.............|++++.||.|.... ....+ .+...... ..... ..
T Consensus 65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~-~~~~~--~~ 139 (166)
T d2qtvb1 65 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTT-GSQRI--EG 139 (166)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCC-C---C--CS
T ss_pred hhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhh-HHHhh--cc
Confidence 5678999999998844443332222211111122233488899999998754 22222 22110000 00000 01
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+.. ....+||.++.|++++++++.
T Consensus 140 ~~~~---~~~~~SA~tg~Gv~e~~~~l~ 164 (166)
T d2qtvb1 140 QRPV---EVFMCSVVMRNGYLEAFQWLS 164 (166)
T ss_dssp SCCE---EEEEEBTTTTBSHHHHHHHHT
T ss_pred cCCC---EEEEeeCCCCCCHHHHHHHHh
Confidence 1111 123679999999999999874
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.5e-13 Score=106.66 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
+..+|+++|..|+|||||++.+++... .... ..+.......+.. ++. .+.+|||+|... ..
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~---~t~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~--------~~---- 66 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSY-QVLE---KTESEQYKKEMLV-DGQTHLVLIREEAGAPD--------AK---- 66 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCC-CCCC---CSSCEEEEEEEEE-TTEEEEEEEEECSSCCC--------HH----
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCC-CCcC---CccceeEEEEeec-CceEEEEEEeecccccc--------cc----
Confidence 358999999999999999999987653 2111 1111111222333 554 467899999543 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccc-ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.+.++|++++|+|++++-|-.. ..+..++....... ...|+++|.||.|+.......+.. .....+.
T Consensus 67 ----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~~ 135 (175)
T d2bmja1 67 ----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARALC 135 (175)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHHH
T ss_pred ----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHHH
Confidence 1246799999999984433222 22334443332211 122788999988865431011100 0122233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+-.++ .+||+++.++.+++..+.+.+
T Consensus 136 ~~~~~~~~~-----e~SAk~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 136 ADMKRCSYY-----ETCATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp HTSTTEEEE-----EEBTTTTBTHHHHHHHHHHHH
T ss_pred HHhCCCeEE-----EeCCCCCcCHHHHHHHHHHHH
Confidence 333332222 468888999999987665543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.49 E-value=3e-13 Score=111.04 Aligned_cols=114 Identities=29% Similarity=0.324 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhh---CCCcccccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
++|+|+|+.|+|||||+.+|+ |......... ....|.......+.| ++..++++||||..+.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF- 80 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF- 80 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence 479999999999999999884 3221100000 122344555566677 8999999999997764
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
..+....+. -+|+.++|+|+...+..+....++.+... +. |.++++||+|..
T Consensus 81 ------~~e~~~al~----~~D~avlvvda~~Gv~~~t~~~~~~~~~~-~~----p~~i~iNk~D~~ 132 (267)
T d2dy1a2 81 ------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG 132 (267)
T ss_dssp ------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred ------hhhhhhhhc----ccCceEEEeeccCCccchhHHHHHhhhhc-cc----cccccccccccc
Confidence 334444433 56999999999989999999988888764 43 899999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=8.6e-14 Score=111.66 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=71.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|||||||+|.|+|.... .+.|+......+.. ++..+.++||||..... ..+.....
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~-------~~~~~~~~ 68 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR-------YKLSDYLK 68 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecccccchh-------hHHHHHHH
Confidence 368999999999999999999987641 12222222222223 57788999999965421 12222233
Q ss_pred cccCCccEEEEEEecCC-CCC-HHHHHHH----HHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 99 MAKDGIHAFLVVFSVTN-RFS-QEEETAV----HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~-~~~-~~~~~~l----~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
......+.++++++... ..+ ......+ ..+....... .|+++|+||+|+...
T Consensus 69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 126 (209)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeeccccc
Confidence 33345678888888662 211 2222222 2223333332 389999999999765
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.44 E-value=9.3e-14 Score=109.14 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=88.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....||+|||.+|||||||+|.|.+.......+ +.......+.+ ++..+.++|+.+...... .
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~ 73 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V 73 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceec-----ccccceeEEEe-cccccccccccchhhhhh-----------H
Confidence 455899999999999999999999876522211 22222333334 566777889888655321 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHH-HHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHH--HH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLK--EI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~--~~ 172 (352)
........+.++++++.++.....+... +..... .......|++++.||.|.... ....+.+.+......... ..
T Consensus 74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (186)
T d1f6ba_ 74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMT-DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 152 (186)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HhhhhcccceeeeeeeccCccchHHHHHHHHHhhc-ccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhh
Confidence 2234457789999999873333322221 111111 111123499999999998754 111222222110000000 00
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
......+.+ ...++||+++.|+.++++++.+
T Consensus 153 ~~~~~~~~~---~~~~~SA~tg~Gi~e~~~~l~~ 183 (186)
T d1f6ba_ 153 LKELNARPL---EVFMCSVLKRQGYGEGFRWMAQ 183 (186)
T ss_dssp TTTCCSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred HHHhhcCCC---EEEEEeCCCCCCHHHHHHHHHH
Confidence 000001100 1236799999999999998765
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.1e-12 Score=106.37 Aligned_cols=139 Identities=18% Similarity=0.247 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCCc------------------cc--------ccCCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRKA------------------FK--------ASAGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~------------------~~--------~~~~~~~~t~~~~~~~~~~~~~ 68 (352)
..++|+++|+.++|||||+..|+ |... +. ...-..++|.......+.+ .+
T Consensus 5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~ 83 (239)
T d1f60a3 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 83 (239)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CC
Confidence 34799999999999999998884 2210 00 0001134555566666666 78
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
++++++||||..+ +..-+......+|+.++|+++... .....+..+.++.. +|-. ++|
T Consensus 84 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv~---~ii 148 (239)
T d1f60a3 84 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLI 148 (239)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEE
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCCC---eEE
Confidence 9999999999666 233333455678999999998722 12234444444443 3432 688
Q ss_pred EEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 142 lv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
+++||+|....+...+++.... +..++...+
T Consensus 149 v~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~ 179 (239)
T d1f60a3 149 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 179 (239)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHH-----HHHHHHhcC
Confidence 8999999886544555555555 565665444
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1e-12 Score=105.05 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
..|+|+|++|+|||||+|.|++....... .+.+.......+....+..+.++|+||... ... ..+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~---~~~~~ 67 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRF---QLLDR 67 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBC---CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHH---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccc---CCeeEEEEEEEEeeeeeeeeeeeecccccc-------ccc---hhhhh
Confidence 37999999999999999999986542221 111222222221122366789999999422 111 12223
Q ss_pred ccCCccEEEEEEecCCCCCH--HHHHHH-HHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQ--EEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~--~~~~~l-~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+..++++++|+|+++..+. .....+ .++..........|++|+.||+|+...
T Consensus 68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 34678999999998732211 111122 222221111112288999999999765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=3.2e-11 Score=101.91 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc-ceeeEeE-------------------------------------
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMK------------------------------------- 61 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~------------------------------------- 61 (352)
.+|+|||..++|||||||+|+|...++++....+. .+...+.
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999998876655433221 1111110
Q ss_pred -----------EEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcccCCc-cEEEEEEecCCCCCHHHHHHHHH
Q 018636 62 -----------TTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCLGMAKDGI-HAFLVVFSVTNRFSQEEETAVHR 127 (352)
Q Consensus 62 -----------~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~ 127 (352)
.+..+.-..+++|||||+......+. .....+......+.... +++++|.+++..++..+. +.+
T Consensus 107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~--~~~ 184 (299)
T d2akab1 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKI 184 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--HHH
T ss_pred CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH--HHH
Confidence 01111234578999999986543221 11222222222222333 466667776655555443 233
Q ss_pred HHHhhcccccceEEEEEeCCCCCCc
Q 018636 128 LPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 128 ~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
++.+.+. ..++++|+||+|....
T Consensus 185 ~~~~~~~--~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEVDPQ--GQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHCTT--CSSEEEEEECGGGSCT
T ss_pred HHHhCcC--CCceeeEEeccccccc
Confidence 3333221 1289999999998865
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.35 E-value=1.3e-11 Score=104.65 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (352)
.+|+|||..++|||||||+|+|....+++.
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~ 54 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGS 54 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence 489999999999999999999988655443
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.33 E-value=1.1e-12 Score=106.82 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCCccc--------------------------ccCCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFK--------------------------ASAGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (352)
..++|+++|+.++|||||+..|+ |..... ......+.+.......+.+ .+
T Consensus 23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~ 101 (245)
T d1r5ba3 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 101 (245)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-cc
Confidence 34689999999999999999883 321100 0000111222222333344 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.++||||..+. ...+......+|++++|+++.... ....+..+..+.. ++-. +++
T Consensus 102 ~~i~~iDtPGH~df-----------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~---~ii 166 (245)
T d1r5ba3 102 RRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLV 166 (245)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEE
T ss_pred ceeeeecccccccc-----------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCC---eEE
Confidence 78999999996553 223333445789999999997432 2234445544444 3432 688
Q ss_pred EEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCc----EEEEcCCCcccccchHHHHHHHH
Q 018636 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNR----CVLFDNKTKDEAKGTEQVRQLLS 202 (352)
Q Consensus 142 lv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~~~~~~L~~ 202 (352)
+++||+|.... ....+++.+.. +...+....+. .+ ..+++||.++.++.++++
T Consensus 167 v~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v---~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 167 VVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDV---KYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHE---EEEECBTTTTBTTSSCCC
T ss_pred EEEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCC---EEEEeeccCCCCcccchh
Confidence 99999998743 22345555554 44444332210 01 124678888988877655
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.30 E-value=8.3e-12 Score=100.60 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=70.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC---CCcc--------------------------cccCCCCCcceeeEeEEEEeeCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG---RKAF--------------------------KASAGSSGVTKTCEMKTTVLKDGQ 69 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g---~~~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~~ 69 (352)
..+|+++|+.++|||||+..|+. .... .......+.+.......+.+ ++.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~ 81 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY 81 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCc
Confidence 57999999999999999988852 1100 00011122344444444555 688
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC-------HHHHHHHHHHHHhhcccccceEEE
Q 018636 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFDYMIV 142 (352)
Q Consensus 70 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~il 142 (352)
.++++||||..+ +...+..+...+|+.++|+++.+... ...+..+..+.. ++.. ++|+
T Consensus 82 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~---~iIv 146 (224)
T d1jnya3 82 FFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLIV 146 (224)
T ss_dssp EEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCEE
T ss_pred eeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCC---ceEE
Confidence 999999999765 23333334557899999999985421 223333443333 3432 6888
Q ss_pred EEeCCCCCCc
Q 018636 143 VFTGGDDLED 152 (352)
Q Consensus 143 v~nk~D~~~~ 152 (352)
++||+|+...
T Consensus 147 ~iNK~D~~~~ 156 (224)
T d1jnya3 147 AVNKMDLTEP 156 (224)
T ss_dssp EEECGGGSSS
T ss_pred EEEcccCCCc
Confidence 9999998753
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=1.6e-11 Score=97.29 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|..|||||||++.+. +... ...|.......+.. .+..+.++|++|... ......
T Consensus 2 ~iKivllG~~~vGKTsll~r~~----f~~~---~~pTiG~~~~~~~~-~~~~~~~~D~~gq~~-----------~~~~~~ 62 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR----IIHG---QDPTKGIHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWF 62 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH----HHHS---CCCCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred eEEEEEECCCCCCHHHHHHHHh----cCCC---CCCeeeeEEEEEee-eeeeeeeecccceee-----------eccccc
Confidence 3799999999999999999993 1111 11244444444555 678889999999432 333344
Q ss_pred cccCCccEEEEEEecCCCCC--------HHHHHHHHHHHHhhcc--cccceEEEEEeCCCCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFS--------QEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDL 150 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~--------~~~~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~ 150 (352)
..+.+.++++++++.++... ......+.++...+.. ....|++|++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 56678899999998873221 1112222333322221 1123999999999975
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=1.3e-11 Score=97.41 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|..|+|||||++.+..... ++.+. ....+.. ....+.++||.|... +.....
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~-----~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~ 60 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE----AGTGI-----VETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS----CCCSE-----EEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC----CCccE-----EEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence 47999999999999999999875433 32222 1222333 677889999999433 334445
Q ss_pred cccCCccEEEEEEecCC--CCC------HHHHHHHHHHHH----hhcccccceEEEEEeCCCCCCc--------------
Q 018636 99 MAKDGIHAFLVVFSVTN--RFS------QEEETAVHRLPN----LFGKNVFDYMIVVFTGGDDLED-------------- 152 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~--~~~------~~~~~~l~~~~~----~~~~~~~~~~ilv~nk~D~~~~-------------- 152 (352)
.++.+++++++|++.++ ++. ......+..... ...... |+++++||+|....
T Consensus 61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~--~~~lv~Nk~d~~~~~~~~~~~~~~~~~~ 138 (195)
T d1svsa1 61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT--SIILFLNKKDLFEEKIKKSPLTICYPEY 138 (195)
T ss_dssp GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTS--EEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCC--CEEEEeccchhhhhhccchHHHHHhhhh
Confidence 67789999999998762 111 111122222222 222222 89999999985321
Q ss_pred -chhcHHHHhcccCChhHHHHH-Hh---cC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 153 -HEKTLEDFLGHECPKPLKEIL-QL---CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 153 -~~~~l~~~l~~~~~~~~~~~~-~~---~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
......+... ++...+ .. .. ..++.+ .+||+++.+++++++.+.+++-
T Consensus 139 ~~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~----~tSA~~~~nv~~~F~~v~~~il 192 (195)
T d1svsa1 139 AGSNTYEEAAA-----YIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVFDAVTDVII 192 (195)
T ss_dssp CSCSSHHHHHH-----HHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHH-----HHHHHHHHHhcccCCCcceeE----EEEeECCHhHHHHHHHHHHHHH
Confidence 0001111100 011111 11 11 122222 3588999999999998888764
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=2.4e-11 Score=102.90 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhh---CCCccc-----------ccCCCCCcceeeEeEEEEee---------------CCce
Q 018636 20 RTVVLLGRTGNGKSATGNSIL---GRKAFK-----------ASAGSSGVTKTCEMKTTVLK---------------DGQV 70 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~-----------~~~~~~~~t~~~~~~~~~~~---------------~~~~ 70 (352)
++|+|+|+.++|||||+.+|+ |..... ......+.|.......+.+. ++..
T Consensus 18 RNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (341)
T d1n0ua2 18 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 97 (341)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceE
Confidence 359999999999999999985 221100 00011223333333333221 2345
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 71 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
++++||||..+.. .++...+. -+|+.++|+|+.+.+.......++.+... +- |.++++||+|..
T Consensus 98 inliDtPGh~dF~-------~ev~~al~----~~D~allVVda~eGv~~qT~~~~~~a~~~-~~----p~i~viNKiDr~ 161 (341)
T d1n0ua2 98 INLIDSPGHVDFS-------SEVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE-RI----KPVVVINKVDRA 161 (341)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----EEEEEEECHHHH
T ss_pred EEEEcCCCcHHHH-------HHHHHHHh----hcCceEEEEecccCcchhHHHHHHHHHHc-CC----CeEEEEECcccc
Confidence 8999999988863 33444443 56999999999989999999988887664 33 899999999975
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.2e-10 Score=96.72 Aligned_cols=91 Identities=7% Similarity=0.048 Sum_probs=51.2
Q ss_pred CCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
..+|.+++|..++. +.+.. ...-+.+. +.++|+||+|.... ......+.. +...+.......
T Consensus 166 ~~aD~~l~v~~P~~---Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~--~~~~~~~~~-----~~~al~~~~~~~ 228 (327)
T d2p67a1 166 RMVDCFISLQIAGG---GDDLQGIKKGLMEV-------ADLIVINKDDGDNH--TNVAIARHM-----YESALHILRRKY 228 (327)
T ss_dssp TTCSEEEEEECC---------CCCCHHHHHH-------CSEEEECCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSB
T ss_pred hccceEEEEecCCC---chhhhhhchhhhcc-------ccEEEEEeecccch--HHHHHHHHH-----HHHHhhhcccCC
Confidence 46788888886651 11111 11222232 57899999998865 434333333 343443332211
Q ss_pred EEEc-CCCcccccchHHHHHHHHHHHHHHH
Q 018636 181 VLFD-NKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 181 ~~~~-~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
-.+. ++..+||.++.|+++|++.|.+...
T Consensus 229 ~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 229 DEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp TTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 1111 2345799999999999999988764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=8.2e-11 Score=93.05 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|..|||||||++.+..... ... .|.......+.. ....+.++|+.|.... .....
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~~~-----pTiG~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~ 63 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG-SGV-----PTTGIIEYPFDL-QSVIFRMVDVGGQRSE-----------RRKWI 63 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS-SCC-----CCCSCEEEEEEC-SSCEEEEEECCCSTTG-----------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC-CCC-----ceeeEEEEEEec-cceeeeeccccccccc-----------ccccc
Confidence 47999999999999999999965432 221 233333333444 5778899999996542 22334
Q ss_pred cccCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc--chhcHHHHhcccC-
Q 018636 99 MAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED--HEKTLEDFLGHEC- 165 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~--~~~~l~~~l~~~~- 165 (352)
..+.++++++++++.++.. ...-...+..+..++... ...|++++.||.|+... ....+.++.....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~ 143 (200)
T d2bcjq2 64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 143 (200)
T ss_dssp GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence 4667899999999876211 011111222222222111 12389999999997532 0112222211100
Q ss_pred --------ChhHHHH-HHh---cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 166 --------PKPLKEI-LQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 166 --------~~~~~~~-~~~---~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..++... +.. ....++.| .+||+++.++.++++.|.+++.
T Consensus 144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~ 195 (200)
T d2bcjq2 144 PQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTIL 195 (200)
T ss_dssp CSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHH
Confidence 0011111 111 11223222 3588999999999999887764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.04 E-value=9.5e-10 Score=89.67 Aligned_cols=131 Identities=16% Similarity=-0.019 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 70 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
.+.++|+||..+... ....... +. .....+.+++++++....+........+...........|.++++||+|.
T Consensus 96 ~~~~id~~g~~~~~~----~~~~~~~-~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~ 169 (244)
T d1yrba1 96 DYVLIDTPGQMETFL----FHEFGVR-LM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 169 (244)
T ss_dssp SEEEEECCSSHHHHH----HSHHHHH-HH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred ceeeeccccchhHHH----HHHHHHH-HH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecccc
Confidence 478999999654210 0011111 11 12355688888888744444433322222111111111289999999999
Q ss_pred CCcchhcHHHHhccc-CChhHHHHHHhcCC--------------cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 150 LEDHEKTLEDFLGHE-CPKPLKEILQLCDN--------------RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 150 ~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
... .......... ....+...+..... .....-+..++||.++.|+.+|++.+.+..
T Consensus 170 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~ 241 (244)
T d1yrba1 170 LSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 241 (244)
T ss_dssp CCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 876 3222211100 00001111110000 000111345789999999999999988753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.03 E-value=1.2e-10 Score=93.48 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|..|||||||++.+..... .+ |.......+.+ .+..+.++|+.|..... .....
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~---~p-----TiG~~~~~~~~-~~~~~~~~D~~Gq~~~r-----------~~w~~ 66 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHV---VL-----TSGIFETKFQV-DKVNFHMFDVGGQRDER-----------RKWIQ 66 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC---CC-----CCSCEEEEEEE-TTEEEEEEECCCSTTTT-----------TGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCc---CC-----CCCeEEEEEEE-CcEEEEEEecCccceec-----------cchhh
Confidence 6999999999999999999853221 12 22233333444 67888999999965421 12334
Q ss_pred ccCCccEEEEEEecCCC--------CCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc
Q 018636 100 AKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED 152 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~--------~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~ 152 (352)
.+.+++++++|++.+.. ....-...+.++..++... ...|++|++||+|+...
T Consensus 67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~ 129 (221)
T d1azta2 67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 129 (221)
T ss_dssp GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence 56789999999997611 1111222334444444332 12399999999998643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.98 E-value=3.1e-10 Score=95.22 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc-ceeeEeEEEEeeC----------------CceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~----------------~~~~~lvDtpG~~ 80 (352)
...+|+|||.++||||||+|+|++..... +...+. |.......+.+++ ...+.++|.||+.
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~--~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGN--PANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTS--TTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCC--cCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 44899999999999999999999875422 223333 3333333333322 1357899999998
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
........++..+...+ ..+|++++|+++.
T Consensus 87 ~gA~~g~GLGn~fL~~i----r~~d~lihVV~~f 116 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 116 (296)
T ss_dssp CCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred cccccccccHHHHHHHh----hccceeEEEEecc
Confidence 75544444445555444 4789999999875
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.95 E-value=7.8e-10 Score=91.57 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=44.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~ 88 (352)
.....+|+|||.+|+|||||+|+|.|.....++..+| +|...+. +..+..+.++||||+..+...+..
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG-~Tr~~~~----i~~~~~~~l~DTPGi~~p~~~~~~ 176 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG-ITTSQQW----VKVGKELELLDTPGILWPKFEDEL 176 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC----EEETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEEecCccchhhhhhhhhccceEEECCccc-ccccceE----EECCCCeEEecCCCccccCCccHH
Confidence 3456899999999999999999999998766555544 3333222 124677899999999876655544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=5.6e-10 Score=88.11 Aligned_cols=62 Identities=27% Similarity=0.329 Sum_probs=38.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccC-----CCCCccee-eEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+...+|+|.+|+|||||||+|.+......+. ..|..|+. ...+. + . ....|+||||+.+...
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~--l-~-~gg~iiDTPG~r~~~l 162 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--F-D-FGGYVVDTPGFANLEI 162 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--C-T-TSCEEESSCSSTTCCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE--E-C-CCcEEEeCCccccccc
Confidence 3688999999999999999999876533322 22333332 22222 2 2 2346999999977553
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.92 E-value=1e-08 Score=86.24 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=59.4
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHH-HHHHhhcccccceEEEEEeCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ilv~nk~ 147 (352)
..+.+|.|.|.+... -. ....+|.+++|..+.. +.+...++ -+.+. ..++|+||+
T Consensus 144 ~d~iiiETVG~gq~e-------~~-------~~~~~D~~v~v~~p~~---GD~iQ~~k~gilE~-------aDi~vvNKa 199 (323)
T d2qm8a1 144 FDVILVETVGVGQSE-------TA-------VADLTDFFLVLMLPGA---GDELQGIKKGIFEL-------ADMIAVNKA 199 (323)
T ss_dssp CCEEEEEECSSSSCH-------HH-------HHTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEECC
T ss_pred CCeEEEeehhhhhhh-------hh-------hhcccceEEEEeeccc---hhhhhhhhhhHhhh-------hheeeEecc
Confidence 456677777765531 00 1135788899887761 22222111 11121 679999999
Q ss_pred CCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEE-EcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|..+. ......+.. .+...+.......-. ...+..+|+.++.|+++|++.|.+....
T Consensus 200 D~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~ 257 (323)
T d2qm8a1 200 DDGDG--ERRASAAAS----EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 257 (323)
T ss_dssp STTCC--HHHHHHHHH----HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccc--hHHHHHHHH----HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 98765 333222211 122222222111000 1123467889999999999999887653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.90 E-value=4.4e-10 Score=93.45 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCC----------------ceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~ 82 (352)
.+|+|||.++||||||+|+|++... . ...++ +|.......+.+++. -.+.++|.||+...
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~-~--~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g 79 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGI-E--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCC-c--cccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence 6899999999999999999997764 1 12222 233333333333221 24679999999764
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
......++.++.+.+ ..+|++++|+++.
T Consensus 80 a~~g~Glg~~FL~~i----r~~d~LihVVr~f 107 (278)
T d1jala1 80 ASKGEGLGNKFLANI----RETDAIGHVVRCF 107 (278)
T ss_dssp HHHHGGGTCCHHHHH----HTCSEEEEEEECS
T ss_pred cccCCCccHHHHHHH----HhccceEEEeecc
Confidence 322222333444444 4789999999863
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.88 E-value=9.8e-10 Score=93.40 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=43.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEE-e----------------------eCCceEEEEeC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTV-L----------------------KDGQVVNVIDT 76 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~-~----------------------~~~~~~~lvDt 76 (352)
+|||||.++||||||+|+|+|... .+ ...+.|| ........ . .....+.++|+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~-~v--~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~ 78 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV-EI--ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC-ch--hcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence 699999999999999999999764 22 2222222 11111000 0 01235889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
||+...... ...+...+......+|++++|+++.
T Consensus 79 pGli~ga~~----g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETT
T ss_pred CCcccchhc----ccchHHHHHHhhccceEEEEEeccc
Confidence 998764322 2223333444557899999999975
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=2e-10 Score=91.47 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 16 l~~isl~i~--~Gei~~liGpsGsGKSTLl~~i~Gl~~ 51 (232)
T d2awna2 16 SKDINLDIH--EGEFVVFVGPSGCGKSTLLRMIAGLET 51 (232)
T ss_dssp EEEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEEc--CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 344445544 348999999999999999999999876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=1.2e-09 Score=86.44 Aligned_cols=61 Identities=30% Similarity=0.369 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccC-----CCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+...+|+|.+|+|||||||+|+|......+. ..|..|+..... +.. +| -.|||||||.+..
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l-~~~-~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL-IHT-SG--GLVADTPGFSSLE 162 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE-EEE-TT--EEEESSCSCSSCC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE-Eec-CC--CEEEECCcccccc
Confidence 3577899999999999999999875433221 223334332221 223 33 3589999997754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=4.9e-10 Score=89.46 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 347999999999999999999999876
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.69 E-value=9.8e-09 Score=82.58 Aligned_cols=143 Identities=8% Similarity=0.030 Sum_probs=75.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-------------eEEEEeeCCc---
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--- 69 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--- 69 (352)
+.++.++..+. +..|+|+|+||||||||+++|+|-.. |..|.+..... +..+. ++.
T Consensus 17 vL~~isl~i~~--Ge~vaivG~sGsGKSTLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~--Q~~~lf 88 (242)
T d1mv5a_ 17 ILRDISFEAQP--NSIIAFAGPSGGGKSTIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVS--QDSAIM 88 (242)
T ss_dssp SEEEEEEEECT--TEEEEEECCTTSSHHHHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEEC--CSSCCC
T ss_pred eeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHHhhC----CCCCEEEECCEEeccccHHHHHhheEEEc--cccccC
Confidence 34444555543 48999999999999999999999876 55554433211 01111 111
Q ss_pred eEEEEeCCCCCCC-CCCcHHHHHHHHHHHhcc--c---CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 70 VVNVIDTPGLFDL-SAGSEFVGKEIVKCLGMA--K---DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 70 ~~~lvDtpG~~~~-~~~~~~~~~~~~~~~~~~--~---~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.-++.+...+... ......+........... . .+.+..+ .+....+|++++.++.+++.++..+ +++++
T Consensus 89 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~g~~LSGGqkQRv~iARal~~~p---~ilil 163 (242)
T d1mv5a_ 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV--GERGVKISGGQRQRLAIARAFLRNP---KILML 163 (242)
T ss_dssp CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE--STTSBCCCHHHHHHHHHHHHHHHCC---SEEEE
T ss_pred CcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEe
Confidence 1122222222111 112222222222111110 0 1222221 2222479999999999999988763 44444
Q ss_pred ---EeCCCCCCcchhcHHHHhcc
Q 018636 144 ---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 144 ---~nk~D~~~~~~~~l~~~l~~ 163 (352)
++.+|.... ..+.+.+..
T Consensus 164 DEpts~LD~~~~--~~i~~~l~~ 184 (242)
T d1mv5a_ 164 DEATASLDSESE--SMVQKALDS 184 (242)
T ss_dssp ECCSCSSCSSSC--CHHHHHHHH
T ss_pred cCCccccCHHHH--HHHHHHHHH
Confidence 478887765 555554443
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.62 E-value=1.1e-08 Score=79.92 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+..++|+|+||||||||+++|+|... |..|.+..
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl~~----p~~G~I~~ 60 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTYLK----PLKGEIIY 60 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHhcccc----cCCCEEEE
Confidence 47899999999999999999999876 55555433
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.62 E-value=4.4e-08 Score=76.75 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=43.1
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc----CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK----DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
+..+.||||+|... .+.....++........ ..++-.++|+++.. ...+...+......++ ..-+|
T Consensus 93 ~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~-----~~~lI 162 (213)
T d1vmaa2 93 NKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT--GQNGLVQAKIFKEAVN-----VTGII 162 (213)
T ss_dssp TCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG--HHHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeecccc--CcchhhhhhhhccccC-----CceEE
Confidence 44678999999765 33444455544433221 23577888998862 1222222222222233 57788
Q ss_pred EeCCCCCCc
Q 018636 144 FTGGDDLED 152 (352)
Q Consensus 144 ~nk~D~~~~ 152 (352)
+||+|....
T Consensus 163 ~TKlDe~~~ 171 (213)
T d1vmaa2 163 LTKLDGTAK 171 (213)
T ss_dssp EECGGGCSC
T ss_pred EecccCCCc
Confidence 999998654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.61 E-value=3.8e-09 Score=84.41 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=65.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----E-e-eCCceE-EEEeCCCCCCCCC------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----V-L-KDGQVV-NVIDTPGLFDLSA------ 84 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~-~-~~~~~~-~lvDtpG~~~~~~------ 84 (352)
.+..++|+|+||||||||+++|+|-.. ++.|.+......... . . ...+.+ ++...|.++....
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~~----p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~ 103 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLEE----PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA 103 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC----CCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhh
Confidence 347999999999999999999999876 555655443222111 0 0 001223 3445566554221
Q ss_pred --------CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE----eCCCCC
Q 018636 85 --------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF----TGGDDL 150 (352)
Q Consensus 85 --------~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~----nk~D~~ 150 (352)
+..+..+.+...+... +...+. -..+ ..+|++++.++..++.+... |-++++ +-+|..
T Consensus 104 ~~~~~~~~~~~e~~~~v~~~l~~~--~l~~~~-~~~p-~~LSGGqkQRv~IAraL~~~----P~iLllDEPt~~LD~~ 173 (240)
T d1g2912 104 FPLKLRKVPRQEIDQRVREVAELL--GLTELL-NRKP-RELSGGQRQRVALGRAIVRK----PQVFLMDEPLSNLDAK 173 (240)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH--TCGGGT-TCCG-GGSCHHHHHHHHHHHHHHTC----CSEEEEECTTTTSCHH
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHc--CChhHh-cCCh-hhCCHHHHHHHHHHHHHhcC----CCEEEecCCCcccCHH
Confidence 1111111122222111 010000 0012 37899999999999998776 666664 555543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=4e-08 Score=80.80 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=68.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSA 84 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~ 84 (352)
.++..+..+ .+..|+|+|+||||||||+++|+|... ++.|.+.....+.++.. ... ..++.+..-+.. ..
T Consensus 52 L~~isl~i~--~Ge~vaivG~nGsGKSTLl~~i~Gl~~----p~~G~I~~~g~i~~v~Q-~~~l~~~tv~eni~~~~-~~ 123 (281)
T d1r0wa_ 52 LKNINLNIE--KGEMLAITGSTGSGKTSLLMLILGELE----ASEGIIKHSGRVSFCSQ-FSWIMPGTIKENIIFGV-SY 123 (281)
T ss_dssp EEEEEEEEC--TTCEEEEEESTTSSHHHHHHHHHTSSC----CSEEEEECCSCEEEECS-SCCCCSEEHHHHHTTTS-CC
T ss_pred EeCeEEEEc--CCCEEEEECCCCChHHHHHHHHhCCCc----CCCcEEEECCEEEEEec-cccccCceeeccccccc-cc
Confidence 344445554 348999999999999999999999876 55555554433332211 000 011212111111 11
Q ss_pred CcHHHHHHHHHHH------hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCC
Q 018636 85 GSEFVGKEIVKCL------GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDL 150 (352)
Q Consensus 85 ~~~~~~~~~~~~~------~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~ 150 (352)
.... ...+.... .....+.+.+ +-.....+|++++.++.+++.++... +++|+ ++.+|..
T Consensus 124 ~~~~-~~~~~~~~~~~~~i~~l~~~~~~~--~~~~~~~LSgGqkQRv~lARaL~~~p---~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 124 DEYR-YKSVVKACQLQQDITKFAEQDNTV--LGEGGVTLSGGQRARISLARAVYKDA---DLYLLDSPFGYLDVF 192 (281)
T ss_dssp CHHH-HHHHHHHTTCHHHHTTSTTGGGCE--ECTTCTTSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSSCHH
T ss_pred cchH-HHHHHHHHHhHHHHHhchhhhhhh--hhhhccCCCHHHHHHHHHHHHHHhCc---cchhhcCccccCCHH
Confidence 1111 11221111 1111122222 12222469999999999999988863 44444 4777754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.1e-08 Score=82.15 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++..+ .+.+|+|+|++|||||||+++|+|-.. +..|.+.
T Consensus 20 ~~isl~i~--~Ge~vaIvG~sGsGKSTLl~ll~gl~~----p~~G~I~ 61 (241)
T d2pmka1 20 DNINLSIK--QGEVIGIVGRSGSGKSTLTKLIQRFYI----PENGQVL 61 (241)
T ss_dssp EEEEEEEE--TTCEEEEECSTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred eeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHhcCC----CCCCEEE
Confidence 33344443 347999999999999999999999876 4444443
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=98.53 E-value=2.5e-09 Score=84.70 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++.++... .+..++|+|+||||||||+++|+|-.. ++.|.+..
T Consensus 17 ~~vs~~i~--~Ge~~~liGpsGaGKSTll~~l~Gl~~----p~sG~I~~ 59 (229)
T d3d31a2 17 DNLSLKVE--SGEYFVILGPTGAGKTLFLELIAGFHV----PDSGRILL 59 (229)
T ss_dssp EEEEEEEC--TTCEEEEECCCTHHHHHHHHHHHTSSC----CSEEEEEE
T ss_pred eeeEEEEC--CCCEEEEECCCCCcHHHHHHHHhcCcC----CCCCEEEE
Confidence 34444443 458999999999999999999999876 55554443
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.53 E-value=8.9e-08 Score=76.25 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=70.0
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----Eee-CCceE-EEEeCCCCCC
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLK-DGQVV-NVIDTPGLFD 81 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~-~~~~~-~lvDtpG~~~ 81 (352)
++.++... .+..++|+|+||||||||+++|.|-.. ++.|.+......... ... ..+.+ ++...|.++.
T Consensus 22 ~~vsl~i~--~Ge~~~iiG~sGsGKSTll~~i~gl~~----p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p 95 (242)
T d1oxxk2 22 DNVNINIE--NGERFGILGPSGAGKTTFMRIIAGLDV----PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95 (242)
T ss_dssp EEEEEEEC--TTCEEEEECSCHHHHHHHHHHHHTSSC----CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT
T ss_pred eceEEEEC--CCCEEEEECCCCCcHHHHHHHHHcCcC----CCCceEEECCEEeecCchhhcchhhccceEEeccccccc
Confidence 33344443 348999999999999999999999876 555554443222111 000 01122 3444555443
Q ss_pred C--------------CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE---
Q 018636 82 L--------------SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF--- 144 (352)
Q Consensus 82 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~--- 144 (352)
. ..+..+..+.+...+... +...+ .......+|++++.++..+..+... |-++++
T Consensus 96 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~--~~~~p~~LSGGqkQRvaiARaL~~~----P~llllDEP 167 (242)
T d1oxxk2 96 NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHV--LNHFPRELSGAQQQRVALARALVKD----PSLLLLDEP 167 (242)
T ss_dssp TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTC----CSEEEEEST
T ss_pred cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhc--ChHhh--hhCChhhCCHHHHhHHHHHhHHhhc----ccceeecCC
Confidence 1 111222222233222211 11110 0011147899999999999998776 666664
Q ss_pred -eCCCCCCc
Q 018636 145 -TGGDDLED 152 (352)
Q Consensus 145 -nk~D~~~~ 152 (352)
.-+|....
T Consensus 168 t~~LD~~~~ 176 (242)
T d1oxxk2 168 FSNLDARMR 176 (242)
T ss_dssp TTTSCGGGH
T ss_pred ccCCCHHHH
Confidence 55554433
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.51 E-value=8.8e-08 Score=75.88 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++... .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 22 ~~isl~i~--~Ge~~~iiG~sGsGKSTLl~~i~gl~~----p~sG~I~ 63 (230)
T d1l2ta_ 22 KNVNLNIK--EGEFVSIMGPSGSGKSTMLNIIGCLDK----PTEGEVY 63 (230)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred eceEEEEc--CCCEEEEECCCCCCcchhhHhccCCCC----CCcceeE
Confidence 34444444 348999999999999999999999876 5555443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.48 E-value=9.5e-09 Score=81.77 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||||||||+++|+|-..
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~~ 49 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCChHHHHHHHHHcCCC
Confidence 4788999999999999999999876
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.48 E-value=1.7e-07 Score=73.02 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=42.6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh---cc-cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG---MA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
+..+.+|||+|.... +.....++..... .. ...++-+++|++++.. ..+...+......++ ..-++
T Consensus 88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI 157 (207)
T d1okkd2 88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVI 157 (207)
T ss_dssp TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEE
T ss_pred CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhccC-----CceEE
Confidence 346789999997653 3333333333222 11 1356778888888733 233333333333334 46778
Q ss_pred EeCCCCCCc
Q 018636 144 FTGGDDLED 152 (352)
Q Consensus 144 ~nk~D~~~~ 152 (352)
+||+|....
T Consensus 158 ~TKlDet~~ 166 (207)
T d1okkd2 158 VTKLDGTAK 166 (207)
T ss_dssp EECTTSSCC
T ss_pred EeccCCCCC
Confidence 899998754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.47 E-value=2.6e-07 Score=72.12 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=40.8
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..+.+|||+|..... .......++....... .++-+++|++++.... ....+......++ ..-+|+||+
T Consensus 94 ~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~~-----~~~lI~TKl 163 (211)
T d1j8yf2 94 KMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQASK-----IGTIIITKM 163 (211)
T ss_dssp TCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHCT-----TEEEEEECT
T ss_pred CCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhcccC-----cceEEEecc
Confidence 4578899999975422 1112233443333322 4567888888773322 2222222323233 355779999
Q ss_pred CCCCc
Q 018636 148 DDLED 152 (352)
Q Consensus 148 D~~~~ 152 (352)
|....
T Consensus 164 Det~~ 168 (211)
T d1j8yf2 164 DGTAK 168 (211)
T ss_dssp TSCSC
T ss_pred cCCCc
Confidence 98755
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=3.8e-07 Score=72.59 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=31.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++.++... .+..++|+|+||||||||+++|.|-.. ++.|.+..
T Consensus 22 ~~vsl~i~--~Ge~~~iiG~sGsGKSTLl~~i~Gl~~----p~sG~I~~ 64 (240)
T d3dhwc1 22 NNVSLHVP--AGQIYGVIGASGAGKSTLIRCVNLLER----PTEGSVLV 64 (240)
T ss_dssp EEEEEEEC--SSCEEEEEESTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred eceeEEEc--CCCEEEEECCCCCCHHHHHHHHcCCcc----ccCCceEE
Confidence 34444443 347999999999999999999999876 55554443
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3.4e-08 Score=79.81 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=31.4
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++..+ .+..|+|||+||||||||+++|+|-.. +..|.+.
T Consensus 31 ~~isl~i~--~Ge~vaivG~sGsGKSTLl~li~gl~~----p~~G~I~ 72 (251)
T d1jj7a_ 31 QGLTFTLR--PGEVTALVGPNGSGKSTVAALLQNLYQ----PTGGQLL 72 (251)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred eceEEEEc--CCCEEEEECCCCCcHHHHHHHHhcccC----CCcCEEE
Confidence 34444443 348999999999999999999999876 5545443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.45 E-value=2.3e-07 Score=72.40 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=44.2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..+.+|||+|.... +.....++...... ..++-+++|.++... .........+...++ ..-+++||+
T Consensus 92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~--~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl 159 (207)
T d1ls1a2 92 ARDLILVDTAGRLQI---DEPLMGELARLKEV--LGPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL 159 (207)
T ss_dssp TCCEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred cCcceeecccccchh---hhhhHHHHHHHHhh--cCCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence 446789999997663 33445555554432 256778888887622 333334443433334 456888999
Q ss_pred CCCCc
Q 018636 148 DDLED 152 (352)
Q Consensus 148 D~~~~ 152 (352)
|....
T Consensus 160 De~~~ 164 (207)
T d1ls1a2 160 DGDAR 164 (207)
T ss_dssp GGCSS
T ss_pred Ccccc
Confidence 97654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=6.7e-07 Score=73.20 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
-..|+|+|+.++|||||+|.|+|.. .|..+.+..++|.....+..... .+..+.++||.|+.+....+......+..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~~ 111 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFA 111 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHHHH
Confidence 3589999999999999999999865 35555555556666555444332 35578899999998754322211122221
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
... --.++++|-... .+.+.+...+..+.+
T Consensus 112 l~~---llSs~~i~N~~~--~~~~~~l~~L~~~~~ 141 (277)
T d1f5na2 112 LAV---LLSSTFVYNSIG--TINQQAMDQLYYVTE 141 (277)
T ss_dssp HHH---HHCSEEEEEEES--CSSHHHHHTTHHHHT
T ss_pred HHH---HHhCEEEEeccc--cCcHHHHHHHHHHHH
Confidence 111 112455554332 455666655555444
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=4.2e-07 Score=70.84 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=42.7
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc---c-CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA---K-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
+..+.+|||+|... .+....+++....... . ..++-+++|++++. ...+..........++ ..-++
T Consensus 91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~-----~~~lI 160 (211)
T d2qy9a2 91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST--GQNAVSQAKLFHEAVG-----LTGIT 160 (211)
T ss_dssp TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG--THHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhccc--CcchHHHHhhhhhccC-----CceEE
Confidence 34678999999654 2333445554443321 1 23567888888862 2333333332333333 56788
Q ss_pred EeCCCCCCc
Q 018636 144 FTGGDDLED 152 (352)
Q Consensus 144 ~nk~D~~~~ 152 (352)
+||+|....
T Consensus 161 lTKlDe~~~ 169 (211)
T d2qy9a2 161 LTKLDGTAK 169 (211)
T ss_dssp EECCTTCTT
T ss_pred EeecCCCCC
Confidence 999998754
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=98.41 E-value=6.4e-08 Score=78.39 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=32.0
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++.++... .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 18 l~~vs~~i~--~GEi~~iiG~sGsGKSTLl~~i~Gl~~----p~~G~I~ 60 (258)
T d1b0ua_ 18 LKGVSLQAR--AGDVISIIGSSGSGKSTFLRCINFLEK----PSEGAII 60 (258)
T ss_dssp EEEEEEEEC--TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred EcceeeEEc--CCCEEEEECCCCCcHHHHHHHHHcCcc----CCCCCEE
Confidence 344444444 348999999999999999999999876 5555443
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.40 E-value=3e-08 Score=80.14 Aligned_cols=35 Identities=29% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++..+ .+.+|+|+|++|||||||+++|+|-..
T Consensus 35 ~~isl~i~--~Ge~vaivG~sGsGKSTLl~ll~gl~~ 69 (255)
T d2hyda1 35 KDINLSIE--KGETVAFVGMSGGGKSTLINLIPRFYD 69 (255)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred eceEEEEc--CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence 34444444 347999999999999999999999876
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.39 E-value=5e-07 Score=69.18 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+|+|+|+||+|||||++.|+|...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~ 25 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC
Confidence 799999999999999999998655
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=7.2e-08 Score=77.15 Aligned_cols=45 Identities=22% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++.++... .+..++|+|+||||||||+|+|+|... ++.|.++.
T Consensus 17 vl~~vs~~v~--~Gei~glvG~nGaGKSTLl~~l~G~~~----p~~G~i~i 61 (238)
T d1vpla_ 17 ILKGISFEIE--EGEIFGLIGPNGAGKTTTLRIISTLIK----PSSGIVTV 61 (238)
T ss_dssp EEEEEEEEEC--TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred EEccceeEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEE
Confidence 3444445544 347999999999999999999999877 55554443
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=98.23 E-value=7.1e-08 Score=77.35 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++.++..+ .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 22 l~~vs~~i~--~Gei~~liGpnGaGKSTl~~~i~Gl~~----p~~G~I~ 64 (240)
T d1ji0a_ 22 IKGIDLKVP--RGQIVTLIGANGAGKTTTLSAIAGLVR----AQKGKII 64 (240)
T ss_dssp EEEEEEEEE--TTCEEEEECSTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred EeeeeEEEC--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCccEEE
Confidence 344444444 347999999999999999999999876 5555444
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.14 E-value=1.7e-07 Score=75.88 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++... .+..++|+|+||||||||+++|+|... ++.|.+.
T Consensus 21 ~~vs~~v~--~Gei~~liG~nGaGKSTLl~~i~Gl~~----p~~G~I~ 62 (254)
T d1g6ha_ 21 DGVSISVN--KGDVTLIIGPNGSGKSTLINVITGFLK----ADEGRVY 62 (254)
T ss_dssp EEECCEEE--TTCEEEEECSTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred cceEEEEC--CCCEEEEECCCCCcHHHHHHHHHCCCc----CCCcEEE
Confidence 34444443 347999999999999999999999876 4444443
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=0.00028 Score=60.05 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-+++|||++|+|||+++..|+........|..- .+..++-+|...+........++.+.+...+..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l--------------~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~ 109 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL--------------KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE 109 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS--------------TTCEEEEECC-----------CHHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHH--------------cCceEEEeeHhhhhcccCcchhHHHHHHHHHHH
Confidence 467999999999999998877443210001110 244455566655544332222333444333332
Q ss_pred ccC-CccEEEEEEecCCCC-----CHHHHHHHHHHHHhhcc
Q 018636 100 AKD-GIHAFLVVFSVTNRF-----SQEEETAVHRLPNLFGK 134 (352)
Q Consensus 100 ~~~-~~~~~l~v~~~~~~~-----~~~~~~~l~~~~~~~~~ 134 (352)
... ...+|+|+-++. .+ +.+......+++-.+..
T Consensus 110 ~~~~~~~~ilfide~h-~l~~~g~~~g~~d~a~~Lkp~L~r 149 (387)
T d1qvra2 110 VVQSQGEVILFIDELH-TVVGAGKAEGAVDAGNMLKPALAR 149 (387)
T ss_dssp HHTTCSSEEEEECCC--------------------HHHHHT
T ss_pred hccCCCceEEEeccHH-HHhcCCCCCCcccHHHHHHHHHhC
Confidence 222 235667766655 22 22334445556555543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.06 E-value=7.4e-07 Score=71.87 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=27.9
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++..+ .+.+|+|||++|||||||+++|+|-..
T Consensus 32 ~~isl~i~--~Ge~iaivG~sGsGKSTLl~ll~gl~~ 66 (253)
T d3b60a1 32 RNINLKIP--AGKTVALVGRSGSGKSTIASLITRFYD 66 (253)
T ss_dssp EEEEEEEC--TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eceEEEEc--CCCEEEEECCCCChHHHHHHHHhcccC
Confidence 34444444 347999999999999999999999876
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=1.4e-06 Score=69.29 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||||||||+++|+|-.
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~ 49 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGMT 49 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45899999999999999999999953
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.49 E-value=2.2e-05 Score=60.04 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|+|.+|+|||||++.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00017 Score=57.99 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-.++|||++|+|||+++..|+........+. . ..+..++-+|...+........++.+.+...+..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~~~~vp~----~----------l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~ 105 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPE----V----------MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ 105 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCG----G----------GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHHhCCccc----c----------cccceeEEeeechHhccCccchhHHHHHHHHHHH
Confidence 5799999999999999999875433100010 0 0234455566655554333333334444444433
Q ss_pred ccCCccEEEEEEecCC-----CCCHHHHHHHHHHHHhhcc
Q 018636 100 AKDGIHAFLVVFSVTN-----RFSQEEETAVHRLPNLFGK 134 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~-----~~~~~~~~~l~~~~~~~~~ 134 (352)
.....++++|+-++.. .-+++.......++-.+..
T Consensus 106 ~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r 145 (268)
T d1r6bx2 106 LEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS 145 (268)
T ss_dssp HSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS
T ss_pred hhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC
Confidence 3234456666555441 1233445566666665554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=2.9e-05 Score=58.28 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+|||||||++.|+..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.37 E-value=6e-06 Score=64.84 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+++|.+|+|||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.21 E-value=9e-05 Score=55.74 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+.+|+|+|++||||||+.+.|...
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 479999999999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.20 E-value=7.5e-05 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|+|.+||||||+.+.|+..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.15 E-value=0.00027 Score=58.73 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..|+|+|.+|+|||||+|+|++...
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEeeccccchHHHHHHhhhcc
Confidence 4699999999999999999997553
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.14 E-value=0.00011 Score=54.80 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+|||||||++.|+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999998754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.10 E-value=0.00015 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998853
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00087 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||+|+++|+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 46899999999999999999854
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.00015 Score=55.10 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+.-|+|+|++|||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.00012 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
++|+|+|.+||||||+.+.|+..
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00016 Score=54.96 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-.++|||++|+|||+++..|+........+. . . .+..++-+|...+........++.+.+...+..
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~----~---------L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e 109 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPE----G---------L-KGRRVLALDMGALVAGAKYRGEFEERLKGVLND 109 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCG----G---------G-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHHHhCCCCH----H---------H-cCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence 5799999999999999999875433100010 0 0 345556677665544333333444445544433
Q ss_pred cc-CCccEEEEEEecC
Q 018636 100 AK-DGIHAFLVVFSVT 114 (352)
Q Consensus 100 ~~-~~~~~~l~v~~~~ 114 (352)
.. ...++|+|+-++.
T Consensus 110 ~~~~~~~iILfIDeih 125 (195)
T d1jbka_ 110 LAKQEGNVILFIDELH 125 (195)
T ss_dssp HHHSTTTEEEEEETGG
T ss_pred HhcCCCcEEEEcchHH
Confidence 22 2346788887765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.02 E-value=0.0002 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|++||||||+.+.|....
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.02 E-value=0.00018 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+.+|+|+|++||||||+.+.|+.
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999974
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00014 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|+|++|+|||||+..++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00016 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++||||||+.+.|+..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.95 E-value=0.00028 Score=53.93 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....+|+|+|++||||||+...|+..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999843
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.95 E-value=0.00021 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|.|.+||||||+++.|..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999964
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.95 E-value=0.00021 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++||||||+.+.|+..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999854
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.94 E-value=0.00027 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+...|+|.|.+|||||||.+.|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999963
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.92 E-value=0.0002 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|.+||||||+.+.|+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.91 E-value=0.00061 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||+|.++|++.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 56999999999999999999854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.89 E-value=0.00029 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|.|+|.+||||||+.+.|+..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999744
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00032 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+...|+|+|.+||||||+.+.|+..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467888999999999999999754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.89 E-value=0.00025 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00024 Score=54.11 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
-|+|+|++|||||||++.|+..
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00056 Score=54.32 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.+.|.|++|+||||+.+.++.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478899999999999988764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00059 Score=52.86 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
-+.|.|++|+||||+...++.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999987764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00034 Score=54.08 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+.-|+|+|++|+|||||++.|+..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0003 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.-|+|+|++|+|||||++.|+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.80 E-value=0.00048 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+....|+|+|++||||||+...|+..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.80 E-value=0.00032 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999744
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.79 E-value=0.00037 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|.+||||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56888899999999999999754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.78 E-value=0.00031 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|+|++||||||+.+.|+..
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.77 E-value=0.00045 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999743
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00054 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
.-|+++|.+|||||||.+.|+.
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999998863
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.00044 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|+|++||||||+.+.|+..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999743
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.71 E-value=0.00038 Score=53.16 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 018636 22 VVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~ 42 (352)
|+|+|++|||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999998643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.70 E-value=0.00044 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999743
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00043 Score=52.25 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|++||||||..+.|+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.0017 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|.|.|++|+|||+|+++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 459999999999999999998643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.63 E-value=0.00048 Score=51.54 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999974
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00011 Score=57.04 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 018636 21 TVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~ 40 (352)
..+|+|+||+||||++.+|.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999984
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00033 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|.|+|.+||||||+.+.|.-.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468889999999999999999643
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.008 Score=47.06 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..++|.|+|.+||||+++.+.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHH
Confidence 467899999999999999873
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.51 E-value=0.0023 Score=51.73 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=37.8
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
....+|+|++|+|+..+++..+....+.++ + +|.++|+||+|+.+. ...+++.
T Consensus 12 ~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~---~----Kp~IlVlNK~DLv~~--~~~~~w~ 64 (273)
T d1puja_ 12 KLKLIDIVYELVDARIPMSSRNPMIEDILK---N----KPRIMLLNKADKADA--AVTQQWK 64 (273)
T ss_dssp HGGGCSEEEEEEETTSTTTTSCHHHHHHCS---S----SCEEEEEECGGGSCH--HHHHHHH
T ss_pred HHHhCCEEEEEEECCCCCCCCCHHHHHHHc---C----CCeEEEEECccCCch--HHHHHHH
Confidence 345789999999998777766655444432 2 389999999999876 4444433
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.0072 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+.|.|++|+||||++.+++..
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998743
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.48 E-value=0.00043 Score=57.21 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l 39 (352)
--+|||+|||||||+|.+|
T Consensus 26 lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4579999999999999988
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.47 E-value=0.00072 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|.+||||||+++.|...
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999999743
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.00076 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|.|.+|||||||.+.|..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.45 E-value=0.0008 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|+|++||||||+.+.|+..
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.00086 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+|+|+|++||||||..+.|+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.36 E-value=0.00086 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|+|++|||||||.++|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.34 E-value=0.0012 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|-|..||||||+++.|...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.18 E-value=0.0076 Score=43.71 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
++..|+|.|.-|||||||++.|+...
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhc
Confidence 45789999999999999999987443
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.13 E-value=0.0011 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+.|.|++|+|||||.++|++.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.10 E-value=0.0055 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..-|+|.|++|+||||++.+++...
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hceEEEEcCCCCCccHHHHHHhhhh
Confidence 3679999999999999999998653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.05 E-value=0.0056 Score=47.50 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=35.4
Q ss_pred CccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 103 GIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 103 ~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
++|.+++|+++. ..++..-..+.-.+....+- +.+||+||+|+... ...++.+.
T Consensus 10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i----~pvIvlnK~DL~~~--~~~~~~~~ 64 (231)
T d1t9ha2 10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDI----QPIICITKMDLIED--QDTEDTIQ 64 (231)
T ss_dssp CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTC----EEEEEEECGGGCCC--HHHHHHHH
T ss_pred ccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeccccccc--HHHHHHHH
Confidence 678888888875 35666655544444443343 78899999999876 44444443
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.0017 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+.|.|++|+||||+.++|+..
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHhc
Confidence 35899999999999999999754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0019 Score=49.06 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..|||.|..||||||+.+.|.
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.95 E-value=0.0072 Score=46.94 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 018636 21 TVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~ 40 (352)
.++|.|+|.+||||+++.+.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhH
Confidence 57899999999999999874
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0016 Score=56.26 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l 39 (352)
.-+|+|+||+||||++.+|
T Consensus 27 l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 27 FTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3568899999999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0032 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...++|.|++|+||||++++|+...
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.87 E-value=0.0027 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...++|.|++|+||||+++.|+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.87 E-value=0.0028 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..|.|.|.+|||||||.+.|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.79 E-value=0.0029 Score=49.64 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+.|.|++|+||||++++|+...
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.79 E-value=0.0022 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||.|.++|+..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 56899999999999999999854
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.76 E-value=0.0016 Score=52.62 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|.|.+|||||||.+.|..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999998753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0024 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|-|.-||||||+++.|...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.71 E-value=0.003 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|-|++||||||+...|+..
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.64 E-value=0.0032 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..|||.|..||||||+.+.|.
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.64 E-value=0.02 Score=44.11 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=48.3
Q ss_pred CCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
.++|.+++|+.+. ..++..-..++-.+....+- +.+||+||+|+.+. +.+..+. .+......-|
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i----~pvIvlnK~DL~~~--~~~~~~~---------~~~~~~~~~~ 73 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNEL----ETVMVINKMDLYDE--DDLRKVR---------ELEEIYSGLY 73 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTC----EEEEEECCGGGCCH--HHHHHHH---------HHHHHHTTTS
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeCcccCCH--HHHHHHH---------Hhhcccccce
Confidence 3679899999876 35666555443333333343 88999999999865 4333222 2222212112
Q ss_pred EEEcCCCcccccchHHHHHHHHHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
.+ ..+|+.++.++++|.+.+
T Consensus 74 ~v----~~vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 74 PI----VKTSAKTGMGIEELKEYL 93 (225)
T ss_dssp CE----EECCTTTCTTHHHHHHHH
T ss_pred eE----EEeccccchhHhhHHHHh
Confidence 11 234666677788877654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0033 Score=48.49 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..|+|+|..||||||+.+.|.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 479999999999999999885
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0036 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
....|+|.|.+|||||||.+.|.
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCCcHHHHHHH
Confidence 34799999999999999988875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.0033 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.|+|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0041 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+.-|+|-|..||||||+++.|..
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.004 Score=48.33 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+.|+|.|++||||||+...|+...
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.42 E-value=0.0038 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.-|+|.|++|+|||+|+++|++.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 35999999999999999999854
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.34 E-value=0.0043 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|.|+.|+|||||++.++.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 5788999999999999998863
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0041 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+.|.|++|+||||++++|+..
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999999854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0049 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+.-|+|-|..||||||+++.|...
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999998643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.16 E-value=0.0034 Score=50.67 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 018636 22 VVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~ 42 (352)
+.|.|++|+||||+++.++..
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 455699999999999999754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0041 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|.|.|++|+|||+|+++|++..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 469999999999999999998654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.0055 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+.|.|++|+||||+++.|+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHH
Confidence 5899999999999999998754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.0086 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
....|+|.|..|||||||...|.
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHH
Confidence 34789999999999999988774
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0072 Score=46.71 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+.-|+|-|.-||||||+++.|...
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.0063 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..++|.|.-|||||||+|.|+..
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 57889999999999999998753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.85 E-value=0.0052 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+|++||+||||||-|.++|++..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=0.0073 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+.|.|++|+||||++.+|+..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 4889999999999999999854
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.013 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+...+.++|++|+|||.|.+.|+.
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCcchhHHHHHHHHh
Confidence 3345799999999999999999974
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0095 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|=|.-||||||+++.|..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999999974
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.48 E-value=0.011 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|.|..||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999964
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.37 E-value=0.1 Score=39.26 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...+.+.|++|+||||+...|+.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.15 E-value=0.012 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+++.|++|+|||+|.++|++..
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999997543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.13 E-value=0.018 Score=42.56 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+.-|+|+|++|+|||||.-.|..
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999877763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.00 E-value=0.019 Score=42.36 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+.-|+|.|++|+|||||.-.|..
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999988764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.017 Score=44.45 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..+.|.|++|+|||||+..++.
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 35889999999999999877763
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.67 E-value=0.024 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|+|..|+|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999999888643
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.45 E-value=0.023 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|.++|+||||||-|.++|+.
T Consensus 69 ~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeCCCCccHHHHHHHHHh
Confidence 4699999999999999999974
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=93.44 E-value=0.019 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|=|.-|+||||+++.|...
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC-
T ss_pred eEEEEECCcCCCHHHHHHHHHHH
Confidence 68999999999999999999743
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.36 E-value=0.027 Score=41.26 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+.-|+|.|++|+|||||.-.|..
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 46799999999999999866653
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=93.33 E-value=0.018 Score=47.43 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+|+|=|.-|+||||+++.|....
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999997543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.33 E-value=0.011 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
-.|.|+|++|+|||||+++|.+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 3699999999999999998864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.27 E-value=0.18 Score=39.88 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
+..+.|.|++|+|||||+-.++.... . .+..+.+|||-|-.+
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q----~-----------------~g~~~vyIDtE~~~~ 101 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQ----A-----------------AGGVAAFIDAEHALD 101 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHH----H-----------------TTCEEEEEESSCCCC
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHh----c-----------------CCCEEEEEECCccCC
Confidence 36789999999999999755542211 0 233456899999665
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.07 E-value=0.029 Score=46.14 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
-.+|.|=|.-|+||||+++.|....
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred eEEEEEECCccCCHHHHHHHHHHHh
Confidence 3799999999999999999998653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.028 Score=43.88 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..+.|.|++|+|||||+..++-
T Consensus 34 G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 34 GSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEEEEEESTTSSHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999999977653
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=92.90 E-value=0.025 Score=42.47 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++++|||+|+++|+.-
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHHH
Confidence 68999999999999999988643
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.83 E-value=0.38 Score=37.89 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..+.|.|++|+|||||+-.++.
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCccchHHHHHHHHH
Confidence 5788999999999999866653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.70 E-value=0.025 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.++|+|++|+|||.|.++|++..
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 45567999999999999998753
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.038 Score=44.21 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhC
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.|-..+-|++|+|..|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4556778999999999999999988864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.62 E-value=0.043 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...+.++|++|+|||.|.+.|+.
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCcchHHHHHHHHHH
Confidence 34788999999999999998863
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.027 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
.+++|+|.+|+|||++++.|+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 579999999999999987765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.35 E-value=0.04 Score=44.03 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..++|.|++|+|||||+..|+
T Consensus 35 G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 35 GEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3578899999999999976664
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.07 E-value=0.044 Score=42.71 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..+.|.|++|+|||+|+-.++
T Consensus 27 sl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 578999999999999986665
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.89 E-value=0.049 Score=42.68 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..+.|.|++|+|||||.--++
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999975554
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.87 E-value=0.044 Score=42.00 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 018636 22 VVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~ 42 (352)
+.|.|++|+|||-|++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.71 E-value=0.053 Score=42.30 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..+.|.|++|+|||+|.-.++
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3688999999999999986664
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.46 E-value=0.064 Score=42.60 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....+.|.|+.++|||+|+++|..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 346889999999999999999864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.23 E-value=0.06 Score=41.60 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l 39 (352)
+..+.|.|++|+|||+|.-.+
T Consensus 26 G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHH
Confidence 368899999999999997443
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=90.84 E-value=0.068 Score=42.42 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=17.2
Q ss_pred eEEEEEcCCCCCHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l 39 (352)
.+|+|.|+-|+||||+.-.|
T Consensus 2 r~Iai~gKGGvGKTT~a~nL 21 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNL 21 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHH
Confidence 58999999999999987444
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.068 Score=42.50 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..++|+|.+|+|||||+-.|+
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 467799999999999986554
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.079 Score=41.41 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..+.|.|++|+|||+|.-.++
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999986665
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.74 E-value=0.09 Score=35.70 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..|.+.|-.|+||||+.++|.-
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 468999999999999999999963
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.16 E-value=0.13 Score=35.82 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l 39 (352)
....+|.+++|+|||+++-.+
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHH
Confidence 456788999999999887443
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=87.56 E-value=0.18 Score=40.36 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l 39 (352)
..+|++-|+-|+||||+.-.|
T Consensus 2 Mr~IaisgKGGVGKTT~a~NL 22 (289)
T d2afhe1 2 MRQCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 368899999999999976444
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.38 E-value=0.18 Score=41.81 Aligned_cols=20 Identities=35% Similarity=0.523 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCCHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNS 38 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~ 38 (352)
...++|.|.+|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 35788999999999998743
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.28 E-value=0.21 Score=39.53 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=17.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
....|++.|+-|+||||+.-.|+
T Consensus 19 ~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 19 EHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34667777999999999865553
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.10 E-value=0.16 Score=40.15 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhh
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
|-..+-|++|+|..|+|||+|+-.++
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred cccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 33466799999999999999976664
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.05 E-value=0.12 Score=41.63 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCHHHHH-HHh
Q 018636 21 TVVLLGRTGNGKSATG-NSI 39 (352)
Q Consensus 21 ~i~lvG~~g~GKSTli-n~l 39 (352)
.+.|+|.+|+||||++ +.+
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHH
Confidence 4788899999999764 444
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.90 E-value=0.13 Score=41.67 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q 018636 21 TVVLLGRTGNGKSATG 36 (352)
Q Consensus 21 ~i~lvG~~g~GKSTli 36 (352)
.+.|.|..|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4788999999999764
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.01 E-value=0.27 Score=38.30 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|.|.|++|+||+++.+.|..
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999963
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=0.27 Score=37.19 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=17.5
Q ss_pred eEEEEEcCC-CCCHHHHHHHhh
Q 018636 20 RTVVLLGRT-GNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~-g~GKSTlin~l~ 40 (352)
.++-|.|.. |+||||+.-.|+
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 588999995 999999876654
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.35 Score=38.47 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..|.+.|+.|+||||+.-.|+
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCcChHHHHHHHHH
Confidence 577889999999999876664
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.92 E-value=0.23 Score=34.33 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.1
Q ss_pred ceEEEEEcCCCCCHHHH
Q 018636 19 ERTVVLLGRTGNGKSAT 35 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTl 35 (352)
+.+++|.+++|+|||..
T Consensus 7 ~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 7 GMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp TCEEEECCCTTSSTTTT
T ss_pred CCcEEEEcCCCCChhHH
Confidence 46788889999999943
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.55 E-value=0.37 Score=37.86 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
..+.|.|++|+|||||+=.++
T Consensus 55 ~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 578999999999999975554
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.59 E-value=0.32 Score=38.64 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhh
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
|-..+-|++|+|..|+|||+|+-.++
T Consensus 64 pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 64 PIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEeecCCCCChHHHHHHHH
Confidence 44566799999999999999975443
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.09 E-value=0.37 Score=38.06 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHh
Q 018636 13 TSPSNGERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l 39 (352)
..|-..+-|++|+|..|+|||+|+..+
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~ 87 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDT 87 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred cccccCCceEeeccCCCCChHHHHHHH
Confidence 344556789999999999999998543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=81.07 E-value=0.44 Score=33.28 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.5
Q ss_pred EEEEcCCCCCHHH-HHHHh
Q 018636 22 VVLLGRTGNGKSA-TGNSI 39 (352)
Q Consensus 22 i~lvG~~g~GKST-lin~l 39 (352)
-+++|+-.||||| |++.+
T Consensus 5 ~~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEEccccCHHHHHHHHHH
Confidence 3678999999999 66665
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.07 E-value=0.58 Score=35.58 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=16.6
Q ss_pred eEEEEE-cCCCCCHHHHHHHhh
Q 018636 20 RTVVLL-GRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lv-G~~g~GKSTlin~l~ 40 (352)
+.|+|+ |+.|+||||+.-.|+
T Consensus 2 kvIav~s~KGGvGKTtia~nlA 23 (232)
T d1hyqa_ 2 RTITVASGKGGTGKTTITANLG 23 (232)
T ss_dssp EEEEEEESSSCSCHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHH
Confidence 467788 889999999876553
|