Citrus Sinensis ID: 018694
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZE1 | 334 | Probable 3-hydroxyisobuty | yes | no | 0.911 | 0.958 | 0.766 | 1e-146 | |
| O34948 | 288 | Uncharacterized oxidoredu | yes | no | 0.789 | 0.961 | 0.491 | 7e-73 | |
| Q949M8 | 318 | Probable 3-hydroxyisobuty | no | no | 0.820 | 0.905 | 0.484 | 7e-67 | |
| Q9C991 | 299 | Probable 3-hydroxyisobuty | no | no | 0.826 | 0.969 | 0.477 | 4e-66 | |
| O33730 | 291 | Uncharacterized oxidoredu | yes | no | 0.809 | 0.975 | 0.365 | 2e-43 | |
| P0ABQ2 | 294 | 2-hydroxy-3-oxopropionate | N/A | no | 0.826 | 0.986 | 0.342 | 2e-43 | |
| P0ABQ3 | 294 | 2-hydroxy-3-oxopropionate | yes | no | 0.826 | 0.986 | 0.342 | 2e-43 | |
| P77161 | 292 | 2-hydroxy-3-oxopropionate | N/A | no | 0.820 | 0.986 | 0.358 | 1e-42 | |
| Q5RKN4 | 462 | Putative oxidoreductase G | yes | no | 0.777 | 0.590 | 0.329 | 5e-38 | |
| Q562D5 | 534 | Putative oxidoreductase G | yes | no | 0.777 | 0.511 | 0.323 | 7e-37 |
| >sp|Q9SZE1|3HID1_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial OS=Arabidopsis thaliana GN=At4g29120 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 517 bits (1331), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/321 (76%), Positives = 289/321 (90%), Gaps = 1/321 (0%)
Query: 25 SLVTLLLRRRSMAT-VASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83
S+V+ RRSMA+ S+D + P+NT+IGWIGTGVMGRSMC HL+ AGYTVTVFNRT+S
Sbjct: 12 SVVSSFFLRRSMASSTISSDIITPSNTKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTIS 71
Query: 84 KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDM 143
KAQ L+D+GA++ADSP+S+A QSDVVF+IVGYPSDVRHVLL P SGALSGLR GG++VDM
Sbjct: 72 KAQTLIDMGANVADSPNSVAEQSDVVFTIVGYPSDVRHVLLDPKSGALSGLRQGGVLVDM 131
Query: 144 TTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM 203
TTSEPSLA E++ AAS KNC +IDAPVSGGD GAK G L+IFAGGDE+ V++L+PLF+LM
Sbjct: 132 TTSEPSLAEEIAKAASFKNCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLFSLM 191
Query: 204 GKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKS 263
GKVN+MG SGKGQFAKLANQITIA+TM+GLVEG++YAHKAGL+V+ FL AISTGAAGSKS
Sbjct: 192 GKVNFMGTSGKGQFAKLANQITIASTMLGLVEGLIYAHKAGLDVKKFLEAISTGAAGSKS 251
Query: 264 LDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGN 323
+DL+G RILKRDF+PGF+VNHFVKDLGICL ECQ MGLALPGLALAQQLYLSLKAHGEG+
Sbjct: 252 IDLYGDRILKRDFDPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHGEGD 311
Query: 324 LGTQALILALERLNNVRLDNA 344
LGTQAL+LALERLNNV + ++
Sbjct: 312 LGTQALLLALERLNNVSVQSS 332
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|O34948|YKWC_BACSU Uncharacterized oxidoreductase YkwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 137/279 (49%), Positives = 190/279 (68%), Gaps = 2/279 (0%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
IG+IG GVMG+SM +H+LN G+ V V+ RT KA+ +L GA D+ L+ ++DV+ +
Sbjct: 5 IGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIIT 64
Query: 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171
+VGYPSDV V S+G + + G ++DMTTS+PSLA +++ AA K A+DAPVS
Sbjct: 65 MVGYPSDVEEVYFG-SNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVS 123
Query: 172 GGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTM 230
GGD GA+ GTLAI GG++ + P+F+LMG+ + Y G +G GQ K+ NQI IA M
Sbjct: 124 GGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGM 183
Query: 231 VGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLG 290
+G+ E M YA K+GL E L +I+TGAAGS SL R+L+ +FEPGF+V HF+KD+G
Sbjct: 184 IGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLSNLAPRMLQGNFEPGFYVKHFIKDMG 243
Query: 291 ICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQAL 329
I L+E + MG +PGL+LA+ LY L A GE N GTQ++
Sbjct: 244 IALEEAELMGEEMPGLSLAKSLYDKLAAQGEENSGTQSI 282
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|Q949M8|3HID3_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial OS=Arabidopsis thaliana GN=At1g71180 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/295 (48%), Positives = 195/295 (66%), Gaps = 7/295 (2%)
Query: 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS 104
+ P+ TRIGWIG G+MG +M +H++ AGY+VTV+ R L K + L GA +A+SP LA
Sbjct: 30 IDPSKTRIGWIGIGIMGSAMVSHIIAAGYSVTVYARDLRKTKDLQTKGARIANSPKELAE 89
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
SDVVF+IVG +DVR +LL G LSGL PGG+ VDMT+S+P LA E+ A A +NC
Sbjct: 90 MSDVVFTIVGNFNDVRSLLLG-DDGVLSGLTPGGVTVDMTSSKPGLAREIHAEARRRNCW 148
Query: 165 AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQI 224
A+DAPVSGGD GA+ GTL IFAGGD +V+ L+P+ +G V YMG +G GQ K+ NQI
Sbjct: 149 AVDAPVSGGDAGAREGTLGIFAGGDSEIVEWLSPVMKNIGTVTYMGEAGSGQSCKIGNQI 208
Query: 225 TIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNH 284
A+ +VGL EG+V+A KAGL+ +L A+ GAAGS + L G I+KRD+ F +
Sbjct: 209 AGASNLVGLAEGIVFAEKAGLDTVKWLEAVKDGAAGSAVMRLFGEMIVKRDYRATGFAEY 268
Query: 285 FVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339
VKDLG+ + AL++QL+ + A+G+G LG Q ++ + RLN +
Sbjct: 269 MVKDLGMAAEAAMPG------AALSKQLFTGMVANGDGKLGIQGVVSVIRRLNGI 317
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9C991|3HID2_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial OS=Arabidopsis thaliana GN=At1g71170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 194/295 (65%), Gaps = 5/295 (1%)
Query: 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS 104
+ P+ TRIGWIG G+MG +M +H+L AGY+VTV+ R L K + L G A+SP L
Sbjct: 9 IEPSKTRIGWIGIGIMGSAMVSHILAAGYSVTVYARDLRKTKDLQTKGGRTANSPKELGE 68
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
SDVVF+IVG +DVR +LL G LSGL+PGG+ VDMT+S+P LA E+ A A ++C
Sbjct: 69 MSDVVFTIVGNSNDVRSLLLG-DDGVLSGLKPGGVTVDMTSSKPGLAREIYAEARRRDCW 127
Query: 165 AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQI 224
A+DAPVSGGD GA+ G L IFAGGD +V+ L P+ MG V +MGG+G GQ K+ NQI
Sbjct: 128 AVDAPVSGGDAGAREGKLTIFAGGDSEIVEWLAPVMKTMGIVRFMGGAGSGQSCKIGNQI 187
Query: 225 TIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNH 284
+ + M+GL EG+V+A KAGL+ +L A+ GAAGS + L G + RD++ F +
Sbjct: 188 CVGSNMIGLAEGIVFAEKAGLDPVKWLEAVKDGAAGSAVMRLFGEMMAVRDYKATGFAEY 247
Query: 285 FVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339
VKDLG+ + A+PG AL +QL+ + A+G+G LG Q ++ + RLN +
Sbjct: 248 MVKDLGMAAEAAM----AMPGTALNKQLFTVMVANGDGKLGFQGVVDVIRRLNGL 298
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|O33730|Y1503_SHEFN Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 3/287 (1%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLASQSDVV 109
++ +IG GVMG M HL+ G+ VTV+NRT +KA Q + G AD+P A D+V
Sbjct: 3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIV 62
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
F+ VG D+R V+L G + G+ G I+VD TT+ +A E++A N + +DAP
Sbjct: 63 FTCVGNDDDLRQVVL-GEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAP 121
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L + GGD++ + P+ + + +G G GQ K+ NQI IA
Sbjct: 122 VSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAG 181
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ GL EG+ +A AGL+ + IS GAA S ++ + + ++ GF ++ KD
Sbjct: 182 VVQGLAEGLHFAKSAGLDGLKVIEVISKGAAQSWQMENRYKTMWQGQYDFGFAIDWMRKD 241
Query: 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335
LGI L E + G LP AL Q Y ++A T +L+ LE+
Sbjct: 242 LGIALDEARRNGSHLPVAALVDQFYSEVQAMKGNRWDTSSLLARLEK 288
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Shewanella frigidimarina (strain NCIMB 400) (taxid: 318167) EC: 1 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|P0ABQ2|GARR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+MG+ M +LL AGY++ V +R ++ GA A + ++A Q DV+
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVII 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ V+ V L +G + G +PG +++DM++ P + E+S A +K +DAPV
Sbjct: 62 TMLPNSPHVKEVALG-ENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPV 120
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLANQITIATT 229
SGG+ A GTL++ GGD+++ K L A+ G V + G G G KLANQ+ +A
Sbjct: 121 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALN 180
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
+ + E + A KAG+N +L AI G AGS LD ++ R+F+PGF ++ +KDL
Sbjct: 181 IAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 240
Query: 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
L +G LP A ++ +L+A G G AL E+L V +
Sbjct: 241 ANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEV 292
|
Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 0 |
| >sp|P0ABQ3|GARR_ECOL6 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=garR PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+MG+ M +LL AGY++ V +R ++ GA A + ++A Q DV+
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVII 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ V+ V L +G + G +PG +++DM++ P + E+S A +K +DAPV
Sbjct: 62 TMLPNSPHVKEVALG-ENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPV 120
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLANQITIATT 229
SGG+ A GTL++ GGD+++ K L A+ G V + G G G KLANQ+ +A
Sbjct: 121 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALN 180
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
+ + E + A KAG+N +L AI G AGS LD ++ R+F+PGF ++ +KDL
Sbjct: 181 IAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 240
Query: 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
L +G LP A ++ +L+A G G AL E+L V +
Sbjct: 241 ANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEV 292
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 0 |
| >sp|P77161|GLXR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 5/293 (1%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVV 109
++G+IG G+MG M +L AG+ + V T+ A LL +GA ++ + SD++
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDII 59
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
F +V V VL + + L+ G IVDM++ P + + +DAP
Sbjct: 60 FIMVPDTPQVEEVLFGENGCTKASLK-GKTIVDMSSISPIETKRFARQVNELGGDYLDAP 118
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228
VSGG+ GA+ GTL+I GGDE+V +++ PLF L+GK + +GG+G GQ K+ANQI +A
Sbjct: 119 VSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVAL 178
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ + E +++A KAG + A+ G A S+ L++HG R++KR F PGF + KD
Sbjct: 179 NIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKD 238
Query: 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
L + L+ + + L LP A Q+L+ + A+G L AL+ ALE + N +L
Sbjct: 239 LNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291
|
Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 0 |
| >sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 144/276 (52%), Gaps = 3/276 (1%)
Query: 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS 104
+ PT+ RIG++G G+MG + ++LL G+ VTV+NRT K + GA L +P + S
Sbjct: 171 ITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVS 230
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
D+ FS V P R ++L P SG L G+RPG V+M+T +P +ELS +S+
Sbjct: 231 MCDITFSCVSDPKAARDLVLGP-SGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGR 289
Query: 165 AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYM--GGSGKGQFAKLAN 222
++APVSG + + G L I A GD SV + + F MGK ++ G +G L
Sbjct: 290 FLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLIL 349
Query: 223 QITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFV 282
+ + M + EG+ A G + + FL+ + G S +D IL+ +F+P +++
Sbjct: 350 NMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKCQNILQGNFKPDYYL 409
Query: 283 NHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318
H KDL + + ++ P A A ++Y KA
Sbjct: 410 KHIQKDLRLAISMGDSVNHPTPMAAAANEVYKRAKA 445
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling. Danio rerio (taxid: 7955) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 2/275 (0%)
Query: 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS 104
+ PT+ +IG++G G+MG + ++LL G+TVTV+NRT K + GAH+ +P + S
Sbjct: 244 IIPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVS 303
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
D+ F+ V P + ++L P SG L G+RPG VDM+T +P +EL+ S+
Sbjct: 304 TCDITFACVADPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGR 362
Query: 165 AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQ 223
++APVSG + + G L I A GD+ V + + F MGK + ++G G L
Sbjct: 363 FLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILN 422
Query: 224 ITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283
+ + M + EGM A G + + L+ ++ G S LD IL+ +F+P F++
Sbjct: 423 MVQGSFMATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLK 482
Query: 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318
+ KDL + + ++ P A A ++Y KA
Sbjct: 483 YIQKDLRLAIALGDSVNHPTPMAAAANEVYKRAKA 517
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| 224142211 | 315 | predicted protein [Populus trichocarpa] | 0.891 | 0.993 | 0.806 | 1e-148 | |
| 449446526 | 310 | PREDICTED: uncharacterized oxidoreductas | 0.874 | 0.990 | 0.811 | 1e-145 | |
| 15233455 | 334 | 3-hydroxyisobutyrate dehydrogenase [Arab | 0.911 | 0.958 | 0.766 | 1e-144 | |
| 297803134 | 334 | 6-phosphogluconate dehydrogenase NAD-bin | 0.928 | 0.976 | 0.757 | 1e-143 | |
| 359484336 | 348 | PREDICTED: uncharacterized oxidoreductas | 0.894 | 0.902 | 0.802 | 1e-142 | |
| 357520839 | 343 | Oxidoreductase, putative [Medicago trunc | 0.888 | 0.909 | 0.785 | 1e-142 | |
| 356513175 | 310 | PREDICTED: uncharacterized oxidoreductas | 0.863 | 0.977 | 0.799 | 1e-142 | |
| 356523828 | 309 | PREDICTED: uncharacterized oxidoreductas | 0.863 | 0.980 | 0.796 | 1e-139 | |
| 449487965 | 314 | PREDICTED: uncharacterized oxidoreductas | 0.866 | 0.968 | 0.743 | 1e-129 | |
| 449446524 | 314 | PREDICTED: uncharacterized oxidoreductas | 0.866 | 0.968 | 0.743 | 1e-129 |
| >gi|224142211|ref|XP_002324452.1| predicted protein [Populus trichocarpa] gi|222865886|gb|EEF03017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/315 (80%), Positives = 290/315 (92%), Gaps = 2/315 (0%)
Query: 31 LRRRSMATVAST--DPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88
L R+MA A+T +P+ P+NTR+GWIGTGVMGRSMC HL+ AGY VTVFNRTLSKAQPL
Sbjct: 1 LLHRTMAAAATTNVEPISPSNTRVGWIGTGVMGRSMCGHLIKAGYKVTVFNRTLSKAQPL 60
Query: 89 LDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148
+D+GA LA SP ++ASQSDVVFSIVG+PSDVR VLL +SGAL GLRPGG++VDMTTSEP
Sbjct: 61 IDMGARLAQSPLAVASQSDVVFSIVGFPSDVRSVLLDSTSGALPGLRPGGVLVDMTTSEP 120
Query: 149 SLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNY 208
SLA+E+SAAA+ K+C ++DAPVSGGDRGAK G+LAIFAGGD++V+ +L+PLFALMG+VNY
Sbjct: 121 SLAAEISAAATIKDCHSVDAPVSGGDRGAKNGSLAIFAGGDKTVIDRLSPLFALMGRVNY 180
Query: 209 MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG 268
MG +GKGQFAKLANQITIA+TMVGLVEG++YAHKAGLNVE +LNAISTGAAGSKSLDL+G
Sbjct: 181 MGATGKGQFAKLANQITIASTMVGLVEGIIYAHKAGLNVESYLNAISTGAAGSKSLDLYG 240
Query: 269 SRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA 328
SRILKRDFE GF+VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA
Sbjct: 241 SRILKRDFEAGFYVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA 300
Query: 329 LILALERLNNVRLDN 343
LILALERLNNV L+N
Sbjct: 301 LILALERLNNVSLEN 315
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446526|ref|XP_004141022.1| PREDICTED: uncharacterized oxidoreductase YkwC-like [Cucumis sativus] gi|449487969|ref|XP_004157891.1| PREDICTED: uncharacterized oxidoreductase YkwC-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/307 (81%), Positives = 284/307 (92%)
Query: 41 STDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPH 100
S D V P+ TR+GWIGTGVMG SMC+H++ AGY +TVFNRT+SKAQPLLD+GA+LA SP
Sbjct: 4 SGDIVSPSTTRVGWIGTGVMGCSMCSHIIKAGYKLTVFNRTISKAQPLLDLGANLATSPL 63
Query: 101 SLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160
++A+QSDVVFSIVGYPSDVR VLL PSSGAL+GLRPGG+++DMTTSEPSLASE++A+A++
Sbjct: 64 AVAAQSDVVFSIVGYPSDVRSVLLDPSSGALAGLRPGGVLIDMTTSEPSLASEIAASATA 123
Query: 161 KNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKL 220
K C AIDAPVSGGDRGAK TLAIFAGGDE VQ+L+PLF+L+GKVNYMG SGKGQFAKL
Sbjct: 124 KGCGAIDAPVSGGDRGAKNATLAIFAGGDEDEVQRLSPLFSLLGKVNYMGESGKGQFAKL 183
Query: 221 ANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF 280
ANQITIA+TMVGLVEGM+YA KAGL+V LFLNAISTGAAGSKSLDL+GSRILKRDFEPGF
Sbjct: 184 ANQITIASTMVGLVEGMIYAKKAGLDVGLFLNAISTGAAGSKSLDLYGSRILKRDFEPGF 243
Query: 281 FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVR 340
FVNHFVKDLGICLKECQNMGLALPGLALAQQLY+SLKA+GEGNLGTQALIL+LERLNNV
Sbjct: 244 FVNHFVKDLGICLKECQNMGLALPGLALAQQLYVSLKAYGEGNLGTQALILSLERLNNVS 303
Query: 341 LDNAVAS 347
L+ + +S
Sbjct: 304 LEGSGSS 310
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233455|ref|NP_194641.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gi|75266757|sp|Q9SZE1.1|3HID1_ARATH RecName: Full=Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial; Short=HIBADH-like; Flags: Precursor gi|13877869|gb|AAK44012.1|AF370197_1 unknown protein [Arabidopsis thaliana] gi|4972058|emb|CAB43926.1| putative protein [Arabidopsis thaliana] gi|7269810|emb|CAB79670.1| putative protein [Arabidopsis thaliana] gi|17065608|gb|AAL33784.1| unknown protein [Arabidopsis thaliana] gi|332660189|gb|AEE85589.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/321 (76%), Positives = 289/321 (90%), Gaps = 1/321 (0%)
Query: 25 SLVTLLLRRRSMAT-VASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83
S+V+ RRSMA+ S+D + P+NT+IGWIGTGVMGRSMC HL+ AGYTVTVFNRT+S
Sbjct: 12 SVVSSFFLRRSMASSTISSDIITPSNTKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTIS 71
Query: 84 KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDM 143
KAQ L+D+GA++ADSP+S+A QSDVVF+IVGYPSDVRHVLL P SGALSGLR GG++VDM
Sbjct: 72 KAQTLIDMGANVADSPNSVAEQSDVVFTIVGYPSDVRHVLLDPKSGALSGLRQGGVLVDM 131
Query: 144 TTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM 203
TTSEPSLA E++ AAS KNC +IDAPVSGGD GAK G L+IFAGGDE+ V++L+PLF+LM
Sbjct: 132 TTSEPSLAEEIAKAASFKNCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLFSLM 191
Query: 204 GKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKS 263
GKVN+MG SGKGQFAKLANQITIA+TM+GLVEG++YAHKAGL+V+ FL AISTGAAGSKS
Sbjct: 192 GKVNFMGTSGKGQFAKLANQITIASTMLGLVEGLIYAHKAGLDVKKFLEAISTGAAGSKS 251
Query: 264 LDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGN 323
+DL+G RILKRDF+PGF+VNHFVKDLGICL ECQ MGLALPGLALAQQLYLSLKAHGEG+
Sbjct: 252 IDLYGDRILKRDFDPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHGEGD 311
Query: 324 LGTQALILALERLNNVRLDNA 344
LGTQAL+LALERLNNV + ++
Sbjct: 312 LGTQALLLALERLNNVSVQSS 332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803134|ref|XP_002869451.1| 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315287|gb|EFH45710.1| 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/326 (75%), Positives = 289/326 (88%)
Query: 21 LSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR 80
LS S + + LRR ++ S+DP+ P+NT+IGWIGTGVMGRSMC HL+ AGYTVTVFNR
Sbjct: 9 LSPSVVSSFFLRRSMASSSISSDPITPSNTKIGWIGTGVMGRSMCGHLIKAGYTVTVFNR 68
Query: 81 TLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGII 140
T+SKAQ L+D+GA+LADSP+S+ASQSDVVF+IVGYPSDVRHVLL P SGALSGL+ GG++
Sbjct: 69 TISKAQTLIDMGANLADSPNSVASQSDVVFTIVGYPSDVRHVLLDPKSGALSGLQQGGVL 128
Query: 141 VDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF 200
VDMTTSEPSLA E++ AAS +NC +IDAPVSGGD GAK G L+IFAGGDE+ V++L+PLF
Sbjct: 129 VDMTTSEPSLAEEIAKAASFENCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLF 188
Query: 201 ALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260
+LMGKVN+MG SGKGQFAKLANQITIA+TM+GLVEG+ YAHKAGL+V+ FL AISTGAA
Sbjct: 189 SLMGKVNFMGTSGKGQFAKLANQITIASTMLGLVEGLTYAHKAGLDVKKFLEAISTGAAR 248
Query: 261 SKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320
SKS+DL+G RILKRDF+PGF+VNHFVKDLGICL ECQ MGLALPGLALAQQLYLSLKAHG
Sbjct: 249 SKSIDLYGDRILKRDFDPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHG 308
Query: 321 EGNLGTQALILALERLNNVRLDNAVA 346
EG LGTQALILALERLNNV + +V+
Sbjct: 309 EGGLGTQALILALERLNNVSVQPSVS 334
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484336|ref|XP_002283629.2| PREDICTED: uncharacterized oxidoreductase ykwC-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/314 (80%), Positives = 288/314 (91%)
Query: 33 RRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG 92
RRSMAT A +PV P+NTR+GWIGTGVMGRSMCAHL+ AGYTVT+FNRT+SKAQPLLD+G
Sbjct: 32 RRSMATAAVAEPVSPSNTRVGWIGTGVMGRSMCAHLMKAGYTVTIFNRTISKAQPLLDMG 91
Query: 93 AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLAS 152
AH A SP +LASQSDVVFSIVG+PSDVR VLL PSSGALSGLRPGG++VDMTTS+PSLA+
Sbjct: 92 AHHASSPLALASQSDVVFSIVGFPSDVRSVLLDPSSGALSGLRPGGVLVDMTTSDPSLAA 151
Query: 153 ELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGS 212
E++++A+S+ C ++DAPVSGGDRGAK TLAIFAGGDESVV++LNPLF+ +GKVNYMGG
Sbjct: 152 EIASSAASRGCFSVDAPVSGGDRGAKNATLAIFAGGDESVVRRLNPLFSHLGKVNYMGGP 211
Query: 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRIL 272
GKGQ+AKLANQI IA+TM+GL+EGM+YA+K+GL+V LFLNAISTGAAGSKSLDL+GSRIL
Sbjct: 212 GKGQYAKLANQIIIASTMLGLIEGMMYAYKSGLDVALFLNAISTGAAGSKSLDLYGSRIL 271
Query: 273 KRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILA 332
KRDFE GFFVNHFVKDLGICL ECQ MGL+LPGLALAQQLYLSLKAHGEGNLGTQALIL
Sbjct: 272 KRDFEAGFFVNHFVKDLGICLIECQKMGLSLPGLALAQQLYLSLKAHGEGNLGTQALILT 331
Query: 333 LERLNNVRLDNAVA 346
LERLNNV L + A
Sbjct: 332 LERLNNVTLQPSSA 345
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520839|ref|XP_003630708.1| Oxidoreductase, putative [Medicago truncatula] gi|355524730|gb|AET05184.1| Oxidoreductase, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/312 (78%), Positives = 284/312 (91%)
Query: 39 VASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADS 98
+A+++P+ P+NTR+GWIGTGVMG+SMCAHL+ +GYT+TVFNRT SKAQPLLDIGA LA S
Sbjct: 1 MATSEPITPSNTRLGWIGTGVMGQSMCAHLIRSGYTLTVFNRTPSKAQPLLDIGATLATS 60
Query: 99 PHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAA 158
PH++ASQSDVVFSIVGYPSDVR VLL P++GAL+GL+ GGI+VDMTTS+PSLA E++ AA
Sbjct: 61 PHAVASQSDVVFSIVGYPSDVRSVLLDPNTGALAGLKSGGILVDMTTSDPSLAVEIADAA 120
Query: 159 SSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFA 218
S K+C +IDAPVSGGDRGAK GTLAIFAGGDES+V+KL+PLF+ +GKVNYMG SGKGQF
Sbjct: 121 SVKSCHSIDAPVSGGDRGAKNGTLAIFAGGDESIVKKLSPLFSSLGKVNYMGTSGKGQFV 180
Query: 219 KLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEP 278
KLANQITIA+TMVGLVEGMVYAHKAGL+V L+L+AISTGAAGSKSL+L+G RILKRDFE
Sbjct: 181 KLANQITIASTMVGLVEGMVYAHKAGLDVGLYLDAISTGAAGSKSLELYGKRILKRDFEA 240
Query: 279 GFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338
GF+VNHFVKDLGICLKEC+ MG+ALPGLALAQQLY+SLKAHGEGNLGTQALIL LERLNN
Sbjct: 241 GFYVNHFVKDLGICLKECEKMGIALPGLALAQQLYVSLKAHGEGNLGTQALILVLERLNN 300
Query: 339 VRLDNAVASKPS 350
V L +V S
Sbjct: 301 VSLPPSVTKWQS 312
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513175|ref|XP_003525289.1| PREDICTED: uncharacterized oxidoreductase ykwC-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/304 (79%), Positives = 280/304 (92%), Gaps = 1/304 (0%)
Query: 39 VASTDP-VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD 97
+A+ +P + P+NTR+GWIGTGVMG+SMCAHL+ AGYT+TVFNRT SKAQPLLD+GA+ A
Sbjct: 1 MAAAEPTISPSNTRVGWIGTGVMGQSMCAHLIRAGYTLTVFNRTPSKAQPLLDLGAYFAP 60
Query: 98 SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAA 157
SPH++A++SDVVFSIVGYPSDVR VLLHPSSGALS LRPGG++VDMTTSEPSLA E++ A
Sbjct: 61 SPHAVAARSDVVFSIVGYPSDVRSVLLHPSSGALSALRPGGVLVDMTTSEPSLAVEIADA 120
Query: 158 ASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQF 217
A++K C +IDAPVSGGDRGAK GTLAIFAGG+ES V+++ LF+ +GKVNYMGGSGKGQF
Sbjct: 121 ATAKGCHSIDAPVSGGDRGAKNGTLAIFAGGEESTVKRMEALFSHLGKVNYMGGSGKGQF 180
Query: 218 AKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFE 277
AKLANQ+TIA+TMVGLVEGMVYAHKAGL+V L+L+AISTGAAGSKSLDL+G RIL RD E
Sbjct: 181 AKLANQVTIASTMVGLVEGMVYAHKAGLDVGLYLDAISTGAAGSKSLDLYGKRILNRDLE 240
Query: 278 PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLN 337
PGFFVNHFVKDLGICLKECQNMG+ALPGLALAQQLY+SL+AHGEGNLGTQALIL LERLN
Sbjct: 241 PGFFVNHFVKDLGICLKECQNMGIALPGLALAQQLYVSLRAHGEGNLGTQALILVLERLN 300
Query: 338 NVRL 341
NV L
Sbjct: 301 NVTL 304
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523828|ref|XP_003530536.1| PREDICTED: uncharacterized oxidoreductase ykwC-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/304 (79%), Positives = 280/304 (92%), Gaps = 1/304 (0%)
Query: 39 VASTDPVCPT-NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD 97
+A+ +P+ + NTR+GWIGTGVMG+SMCAHL+ AGYT+TVFNRT SKAQPLLD+GAH A
Sbjct: 1 MAAAEPIISSSNTRVGWIGTGVMGQSMCAHLIRAGYTLTVFNRTPSKAQPLLDLGAHFAP 60
Query: 98 SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAA 157
SPH++A+ SDVVF+IVGYPSDVR VLLHPSSGALS LRPGG++VDMTTSEPSLA+E++AA
Sbjct: 61 SPHAVAANSDVVFTIVGYPSDVRSVLLHPSSGALSALRPGGVLVDMTTSEPSLATEIAAA 120
Query: 158 ASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQF 217
A++K C +IDAPVSGGDRGAK GTLAIFAGG+E+ V++L PLF+ +GKV YMGGSGKGQF
Sbjct: 121 AAAKGCHSIDAPVSGGDRGAKNGTLAIFAGGEEATVKRLEPLFSHLGKVKYMGGSGKGQF 180
Query: 218 AKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFE 277
AKLANQ+TIA+TMVGLVEGMVYAHKAGL+V L+L+AISTGAAGSKSLDL+G RIL RD +
Sbjct: 181 AKLANQVTIASTMVGLVEGMVYAHKAGLDVGLYLDAISTGAAGSKSLDLYGKRILNRDLD 240
Query: 278 PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLN 337
PGFFVNHFVKDLGICLKECQNMG+ALPGLALAQQLY+SL+AHGEGNLGTQALIL LERLN
Sbjct: 241 PGFFVNHFVKDLGICLKECQNMGIALPGLALAQQLYVSLRAHGEGNLGTQALILVLERLN 300
Query: 338 NVRL 341
NV L
Sbjct: 301 NVTL 304
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487965|ref|XP_004157889.1| PREDICTED: uncharacterized oxidoreductase YkwC-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/304 (74%), Positives = 269/304 (88%)
Query: 41 STDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPH 100
S D V P+ TRIGWIGTG+MG MC H++ AGY +TVFNRT+SKAQPLLD+GA+LA SP
Sbjct: 4 SGDIVSPSTTRIGWIGTGIMGCLMCPHIIKAGYKLTVFNRTISKAQPLLDLGANLALSPL 63
Query: 101 SLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160
+A+QSDVVFS+VGYPSDVR LL P+SGAL+GLRPGG+++DMTTSE SLASE++AAA++
Sbjct: 64 DVAAQSDVVFSVVGYPSDVRSALLDPTSGALAGLRPGGVLIDMTTSEASLASEVAAAATA 123
Query: 161 KNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKL 220
K C AIDAPVSGG+RGAK TLAIFAGGDE VV++L+PLF+L+GKVNYMG SGKGQF KL
Sbjct: 124 KGCWAIDAPVSGGNRGAKNATLAIFAGGDEGVVRRLSPLFSLLGKVNYMGESGKGQFTKL 183
Query: 221 ANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF 280
ANQI IA+++VGLVEGM+YA KAGL+V LFLNAISTG AGSKSLDL+GS+IL+RDF+PG
Sbjct: 184 ANQIIIASSLVGLVEGMIYAKKAGLDVGLFLNAISTGGAGSKSLDLYGSKILERDFQPGG 243
Query: 281 FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVR 340
FV HFVKD+GICLK+CQNMG+ALPGL LA QLY+SLKA+G+GNLG ALIL+LERLNNV
Sbjct: 244 FVEHFVKDIGICLKDCQNMGIALPGLTLAHQLYVSLKAYGDGNLGVHALILSLERLNNVS 303
Query: 341 LDNA 344
LD+
Sbjct: 304 LDDG 307
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446524|ref|XP_004141021.1| PREDICTED: uncharacterized oxidoreductase YkwC-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/304 (74%), Positives = 269/304 (88%)
Query: 41 STDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPH 100
S D V P+ TRIGWIGTG+MG MC H++ AGY +TVFNRT+SKAQPLLD+GA+LA SP
Sbjct: 4 SGDIVSPSTTRIGWIGTGIMGCLMCPHIIKAGYKLTVFNRTISKAQPLLDLGANLALSPL 63
Query: 101 SLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160
+A+QSDVVFS+VGYPSDVR LL P+SGAL+GLRPGG+++DMTTSE SLASE++AAA++
Sbjct: 64 DVAAQSDVVFSVVGYPSDVRSALLDPNSGALAGLRPGGVLIDMTTSEASLASEVAAAATA 123
Query: 161 KNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKL 220
K C AIDAPVSGG+RGAK TLAIFAGGDE VV++L+PLF+L+GKVNYMG SGKGQF KL
Sbjct: 124 KGCWAIDAPVSGGNRGAKNATLAIFAGGDEGVVRRLSPLFSLLGKVNYMGESGKGQFTKL 183
Query: 221 ANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF 280
ANQI IA+++VGLVEGM+YA KAGL+V LFLNAISTG AGSKSLDL+GS+IL+RDF+PG
Sbjct: 184 ANQIIIASSLVGLVEGMIYAKKAGLDVGLFLNAISTGGAGSKSLDLYGSKILERDFQPGG 243
Query: 281 FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVR 340
FV HFVKD+GICLK+CQNMG+ALPGL LA QLY+SLKA+G+GNLG ALIL+LERLNNV
Sbjct: 244 FVEHFVKDIGICLKDCQNMGIALPGLTLAHQLYVSLKAYGDGNLGVHALILSLERLNNVS 303
Query: 341 LDNA 344
LD+
Sbjct: 304 LDDG 307
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| TAIR|locus:2119921 | 334 | AT4G29120 [Arabidopsis thalian | 0.877 | 0.922 | 0.694 | 7.3e-114 | |
| TAIR|locus:2026351 | 318 | AT1G71180 [Arabidopsis thalian | 0.814 | 0.899 | 0.450 | 4.8e-62 | |
| TAIR|locus:2026341 | 299 | AT1G71170 [Arabidopsis thalian | 0.820 | 0.963 | 0.436 | 3.9e-60 | |
| UNIPROTKB|Q9KNF7 | 315 | VC_A0007 "3-hydroxyisobutyrate | 0.806 | 0.898 | 0.356 | 6.4e-44 | |
| TIGR_CMR|VC_A0007 | 315 | VC_A0007 "2-hydroxy-3-oxopropi | 0.806 | 0.898 | 0.356 | 6.4e-44 | |
| TIGR_CMR|CPS_2007 | 287 | CPS_2007 "3-hydroxyisobutyrate | 0.794 | 0.972 | 0.361 | 2.2e-41 | |
| TIGR_CMR|SO_2771 | 291 | SO_2771 "2-hydroxy-3-oxopropio | 0.809 | 0.975 | 0.337 | 5.3e-40 | |
| UNIPROTKB|Q5LVB0 | 290 | SPO0792 "6-phosphogluconate de | 0.814 | 0.986 | 0.332 | 1.3e-38 | |
| TIGR_CMR|SPO_0792 | 290 | SPO_0792 "6-phosphogluconate d | 0.814 | 0.986 | 0.332 | 1.3e-38 | |
| UNIPROTKB|P77161 | 292 | glxR [Escherichia coli K-12 (t | 0.820 | 0.986 | 0.334 | 2.1e-38 |
| TAIR|locus:2119921 AT4G29120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 214/308 (69%), Positives = 254/308 (82%)
Query: 37 ATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA 96
++ S+D + P+NT+IGWIGTGVMGRSMC HL+ AGYTVTVFNRT+SKAQ L+D+GA++A
Sbjct: 25 SSTISSDIITPSNTKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTISKAQTLIDMGANVA 84
Query: 97 DSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXX 156
DSP+S+A QSDVVF+IVGYPSDVRHVLL P SGALSGLR GG++VDMTT
Sbjct: 85 DSPNSVAEQSDVVFTIVGYPSDVRHVLLDPKSGALSGLRQGGVLVDMTTSEPSLAEEIAK 144
Query: 157 XXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQ 216
KNC +IDAPVSGGD GAK G L+IFAGGDE+ V++L+PLF+LMGKVN+MG SGKGQ
Sbjct: 145 AASFKNCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLFSLMGKVNFMGTSGKGQ 204
Query: 217 FAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDF 276
FAKLANQITIA+TM+GLVEG++YAHKAGL+V+ FL AISTGAAGSKS+DL+G RILKRDF
Sbjct: 205 FAKLANQITIASTMLGLVEGLIYAHKAGLDVKKFLEAISTGAAGSKSIDLYGDRILKRDF 264
Query: 277 EPGFFVNHFVKDLGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERL 336
+PGF+VNHFVKDLGICL ECQ M SLKAHGEG+LGTQAL+LALERL
Sbjct: 265 DPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHGEGDLGTQALLLALERL 324
Query: 337 NNVRLDNA 344
NNV + ++
Sbjct: 325 NNVSVQSS 332
|
|
| TAIR|locus:2026351 AT1G71180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 132/293 (45%), Positives = 178/293 (60%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS 106
P+ TRIGWIG G+MG +M +H++ AGY+VTV+ R L K + L GA +A+SP LA S
Sbjct: 32 PSKTRIGWIGIGIMGSAMVSHIIAAGYSVTVYARDLRKTKDLQTKGARIANSPKELAEMS 91
Query: 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAI 166
DVVF+IVG +DVR +LL G LSGL PGG+ VDMT+ +NC A+
Sbjct: 92 DVVFTIVGNFNDVRSLLLG-DDGVLSGLTPGGVTVDMTSSKPGLAREIHAEARRRNCWAV 150
Query: 167 DAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITI 226
DAPVSGGD GA+ GTL IFAGGD +V+ L+P+ +G V YMG +G GQ K+ NQI
Sbjct: 151 DAPVSGGDAGAREGTLGIFAGGDSEIVEWLSPVMKNIGTVTYMGEAGSGQSCKIGNQIAG 210
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286
A+ +VGL EG+V+A KAGL+ +L A+ GAAGS + L G I+KRD+ F + V
Sbjct: 211 ASNLVGLAEGIVFAEKAGLDTVKWLEAVKDGAAGSAVMRLFGEMIVKRDYRATGFAEYMV 270
Query: 287 KDLGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLNNV 339
KDLG+ + + A+G+G LG Q ++ + RLN +
Sbjct: 271 KDLGMAAEAAMP------GAALSKQLFTGMVANGDGKLGIQGVVSVIRRLNGI 317
|
|
| TAIR|locus:2026341 AT1G71170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 128/293 (43%), Positives = 175/293 (59%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS 106
P+ TRIGWIG G+MG +M +H+L AGY+VTV+ R L K + L G A+SP L S
Sbjct: 11 PSKTRIGWIGIGIMGSAMVSHILAAGYSVTVYARDLRKTKDLQTKGGRTANSPKELGEMS 70
Query: 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAI 166
DVVF+IVG +DVR +LL G LSGL+PGG+ VDMT+ ++C A+
Sbjct: 71 DVVFTIVGNSNDVRSLLLG-DDGVLSGLKPGGVTVDMTSSKPGLAREIYAEARRRDCWAV 129
Query: 167 DAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITI 226
DAPVSGGD GA+ G L IFAGGD +V+ L P+ MG V +MGG+G GQ K+ NQI +
Sbjct: 130 DAPVSGGDAGAREGKLTIFAGGDSEIVEWLAPVMKTMGIVRFMGGAGSGQSCKIGNQICV 189
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286
+ M+GL EG+V+A KAGL+ +L A+ GAAGS + L G + RD++ F + V
Sbjct: 190 GSNMIGLAEGIVFAEKAGLDPVKWLEAVKDGAAGSAVMRLFGEMMAVRDYKATGFAEYMV 249
Query: 287 KDLGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLNNV 339
KDLG+ + M + A+G+G LG Q ++ + RLN +
Sbjct: 250 KDLGMAAEAAMAMPGTALNKQLFTV----MVANGDGKLGFQGVVDVIRRLNGL 298
|
|
| UNIPROTKB|Q9KNF7 VC_A0007 "3-hydroxyisobutyrate dehydrogenase, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 102/286 (35%), Positives = 150/286 (52%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPHSLASQSDVV 109
R+ +IG GVMG M HL AG+ VTVFNRT +KA G A++ +DVV
Sbjct: 26 RVSFIGLGVMGYPMAGHLQKAGFDVTVFNRTQAKAVAWAKQFGGQYAETVAECVKNADVV 85
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
+ VG DVR + ++GA+ ++PG +++D TT +DAP
Sbjct: 86 LTCVGNDDDVRSMTT-AATGAIPAMKPGAVLIDHTTTSALLAEELSAAAQQAGLHFMDAP 144
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNY-MGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L I GGDE++ K+ P+FA G+ + MG +G+GQ AK+ NQI IA
Sbjct: 145 VSGGQAGAENGVLTIMCGGDEALFAKMQPIFAAYGRSSVLMGTAGQGQRAKMVNQICIAG 204
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ GL EG++ A +AGL++ + + GAAGS ++ + + F+ GF ++ +KD
Sbjct: 205 VLNGLSEGLMLAEQAGLDIPNLVACLKNGAAGSWQMENRALTMSQEKFDFGFAIDWMIKD 264
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALE 334
LG CL E + L A G G + T LI A++
Sbjct: 265 LGFCLDEAAQLGLRLPMTENTMTAYQRLSAQGLGRMDTSVLIQAVK 310
|
|
| TIGR_CMR|VC_A0007 VC_A0007 "2-hydroxy-3-oxopropionate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 102/286 (35%), Positives = 150/286 (52%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPHSLASQSDVV 109
R+ +IG GVMG M HL AG+ VTVFNRT +KA G A++ +DVV
Sbjct: 26 RVSFIGLGVMGYPMAGHLQKAGFDVTVFNRTQAKAVAWAKQFGGQYAETVAECVKNADVV 85
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
+ VG DVR + ++GA+ ++PG +++D TT +DAP
Sbjct: 86 LTCVGNDDDVRSMTT-AATGAIPAMKPGAVLIDHTTTSALLAEELSAAAQQAGLHFMDAP 144
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNY-MGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L I GGDE++ K+ P+FA G+ + MG +G+GQ AK+ NQI IA
Sbjct: 145 VSGGQAGAENGVLTIMCGGDEALFAKMQPIFAAYGRSSVLMGTAGQGQRAKMVNQICIAG 204
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ GL EG++ A +AGL++ + + GAAGS ++ + + F+ GF ++ +KD
Sbjct: 205 VLNGLSEGLMLAEQAGLDIPNLVACLKNGAAGSWQMENRALTMSQEKFDFGFAIDWMIKD 264
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALE 334
LG CL E + L A G G + T LI A++
Sbjct: 265 LGFCLDEAAQLGLRLPMTENTMTAYQRLSAQGLGRMDTSVLIQAVK 310
|
|
| TIGR_CMR|CPS_2007 CPS_2007 "3-hydroxyisobutyrate dehydrogenase family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 102/282 (36%), Positives = 139/282 (49%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPHSLASQSDVV 109
++ +IG GVMG M HL AG+ V V+NR KA + G +A +P A+ D+V
Sbjct: 2 KVAFIGLGVMGYPMAGHLTKAGHQVCVYNRNRDKALAWQKEFGGDIATTPALAATGCDIV 61
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
F+ VG DVR V L G +GL G I VD TT +DAP
Sbjct: 62 FACVGNDDDVRQVSLG-DEGIFAGLSKGSIFVDHTTASAELAVELAAVADKNGQYFLDAP 120
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNY-MGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L + GGDES+ K P+ A + + MG G GQ AK+ NQI
Sbjct: 121 VSGGQAGAENGVLTVMVGGDESIFAKAEPVMAAFARFSQIMGPVGSGQLAKMVNQICFVN 180
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
T+ GL EG+ +A KAGL+ + L+ I GAAGS +D G + R+F+ GF V+ KD
Sbjct: 181 TVQGLAEGLNFAQKAGLDTDKLLDTIGKGAAGSWQMDNRGKTMCAREFDFGFAVDWVRKD 240
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALI 330
L I E + + ++ +G T +LI
Sbjct: 241 LAIAFAEAEKLGADLTVTKQLDGYYQEIQDNGGSRWDTSSLI 282
|
|
| TIGR_CMR|SO_2771 SO_2771 "2-hydroxy-3-oxopropionate reductase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 97/287 (33%), Positives = 147/287 (51%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVV 109
++ +IG GVMG M HLLN G+ VTV+NRT +KAQ +D G +P A D+V
Sbjct: 3 KVAFIGLGVMGYPMARHLLNKGHEVTVYNRTFAKAQTWVDTYGGRCCPTPKEAAIGQDIV 62
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
F+ VG +D+R V+L G + G+ G ++VD TT K +DAP
Sbjct: 63 FTCVGNDNDLREVVLG-DDGVIHGMALGTVLVDHTTASADVARELHKVLGEKGIDFLDAP 121
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L + GG+++V +++ P+ + +G G GQ K+ NQI IA
Sbjct: 122 VSGGQAGAENGVLTVMVGGEQAVFERVKPVIEAFARCAERLGEVGAGQLTKMVNQICIAG 181
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ GL E + +A KAGL+ E + IS GAA S ++ + ++++ GF V+ KD
Sbjct: 182 VVQGLAEALQFARKAGLDGEKVVEVISKGAAQSWQMENRYKTMWAQNYDFGFAVDWMRKD 241
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALER 335
LGI L+E + ++A G T +L+ E+
Sbjct: 242 LGIALEEARRNGSHLPLTALVDQFYSEVQAMGGNRWDTSSLLARFEK 288
|
|
| UNIPROTKB|Q5LVB0 SPO0792 "6-phosphogluconate dehydrogenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 96/289 (33%), Positives = 144/289 (49%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-LLDIGAHLADSPHSLASQSDVV 109
++ ++G GVMG M HL +AG+ VTV+NR+ +KA+ + G +A +P + A ++ V
Sbjct: 3 KVAFLGLGVMGYPMAGHLKSAGHDVTVYNRSAAKAEKWVTQHGGAMATTPRAAAEGAEFV 62
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
+ VG D+R V P GAL+G+ G + VD TT +DAP
Sbjct: 63 MACVGNDDDLRSVCAGPD-GALAGMAAGSVFVDHTTVSAKVTRELYAAARDGGVGFVDAP 121
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKV-NYMGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L++ GGD++ + P+ A ++ +G SG GQ K+ NQI IA
Sbjct: 122 VSGGQAGAENGVLSVMCGGDQAEYDRAEPVIAAYARICRRIGESGAGQVTKMCNQIAIAG 181
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ GL E + +A KAGL+ + IS GAAGS + +L + GF V+ KD
Sbjct: 182 LVQGLAESLHFAEKAGLDGRAVVEVISQGAAGSWQMANRYETMLDDHWTHGFAVDWMRKD 241
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLN 337
LGICL ++ G G T +L+ L +L+
Sbjct: 242 LGICLDTANETGASLPVTALVDQFYKDVQKMGGGRWDTSSLLARLRKLD 290
|
|
| TIGR_CMR|SPO_0792 SPO_0792 "6-phosphogluconate dehydrogenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 96/289 (33%), Positives = 144/289 (49%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-LLDIGAHLADSPHSLASQSDVV 109
++ ++G GVMG M HL +AG+ VTV+NR+ +KA+ + G +A +P + A ++ V
Sbjct: 3 KVAFLGLGVMGYPMAGHLKSAGHDVTVYNRSAAKAEKWVTQHGGAMATTPRAAAEGAEFV 62
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
+ VG D+R V P GAL+G+ G + VD TT +DAP
Sbjct: 63 MACVGNDDDLRSVCAGPD-GALAGMAAGSVFVDHTTVSAKVTRELYAAARDGGVGFVDAP 121
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKV-NYMGGSGKGQFAKLANQITIAT 228
VSGG GA+ G L++ GGD++ + P+ A ++ +G SG GQ K+ NQI IA
Sbjct: 122 VSGGQAGAENGVLSVMCGGDQAEYDRAEPVIAAYARICRRIGESGAGQVTKMCNQIAIAG 181
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ GL E + +A KAGL+ + IS GAAGS + +L + GF V+ KD
Sbjct: 182 LVQGLAESLHFAEKAGLDGRAVVEVISQGAAGSWQMANRYETMLDDHWTHGFAVDWMRKD 241
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLN 337
LGICL ++ G G T +L+ L +L+
Sbjct: 242 LGICLDTANETGASLPVTALVDQFYKDVQKMGGGRWDTSSLLARLRKLD 290
|
|
| UNIPROTKB|P77161 glxR [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 98/293 (33%), Positives = 154/293 (52%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVV 109
++G+IG G+MG M +L AG+ + V T+ A LL +GA ++ + SD++
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDII 59
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
F +V V VL + + L+ G IVDM++ +DAP
Sbjct: 60 FIMVPDTPQVEEVLFGENGCTKASLK-GKTIVDMSSISPIETKRFARQVNELGGDYLDAP 118
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228
VSGG+ GA+ GTL+I GGDE+V +++ PLF L+GK + +GG+G GQ K+ANQI +A
Sbjct: 119 VSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVAL 178
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ + E +++A KAG + A+ G A S+ L++HG R++KR F PGF + KD
Sbjct: 179 NIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKD 238
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLNNVRL 341
L + L+ + + + A+G L AL+ ALE + N +L
Sbjct: 239 LNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0ABQ3 | GARR_ECOL6 | 1, ., 1, ., 1, ., 6, 0 | 0.3424 | 0.8262 | 0.9863 | yes | no |
| Q9SZE1 | 3HID1_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.7663 | 0.9116 | 0.9580 | yes | no |
| O33730 | Y1503_SHEFN | 1, ., 1, ., -, ., - | 0.3658 | 0.8091 | 0.9759 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 351 | |||
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 1e-102 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 2e-69 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 2e-69 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 1e-59 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-51 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 2e-39 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-37 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 7e-28 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 6e-26 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-12 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 2e-12 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-11 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 3e-10 | |
| pfam01488 | 133 | pfam01488, Shikimate_DH, Shikimate / quinate 5-deh | 2e-08 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 2e-07 | |
| COG0373 | 414 | COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme m | 3e-07 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 5e-07 | |
| PRK07680 | 273 | PRK07680, PRK07680, late competence protein ComER; | 1e-06 | |
| cd05213 | 311 | cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-bindi | 2e-06 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 4e-06 | |
| PRK00045 | 423 | PRK00045, hemA, glutamyl-tRNA reductase; Reviewed | 2e-05 | |
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 3e-05 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 5e-05 | |
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 6e-05 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 3e-04 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 8e-04 | |
| TIGR00507 | 270 | TIGR00507, aroE, shikimate 5-dehydrogenase | 0.001 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 0.001 | |
| COG0169 | 283 | COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac | 0.001 | |
| cd01065 | 155 | cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom | 0.002 | |
| PRK08655 | 437 | PRK08655, PRK08655, prephenate dehydrogenase; Prov | 0.002 | |
| PLN00203 | 519 | PLN00203, PLN00203, glutamyl-tRNA reductase | 0.003 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = e-102
Identities = 129/287 (44%), Positives = 174/287 (60%), Gaps = 3/287 (1%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPHSLASQSDV 108
+I +IG G+MG M A+LL AG+ VTV+NRT KA LL GA +A SP A+++DV
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168
V +++ + VR VL +G L GL+PG I++DM+T P A EL+AA ++K +DA
Sbjct: 61 VITMLPDDAAVRAVLF-GENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA 119
Query: 169 PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIA 227
PVSGG GA GTL I GGD ++ P+ MGK + ++G G GQ AKLAN I +A
Sbjct: 120 PVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLA 179
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287
+ L E + A KAGL+ ++ L IS GAAGS L+ +G R+L+ DF PGF V+ +K
Sbjct: 180 GNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLK 239
Query: 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334
DLG+ L + +G LP ALA +LY A G G ALI LE
Sbjct: 240 DLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 2e-69
Identities = 101/290 (34%), Positives = 160/290 (55%), Gaps = 2/290 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+MG+ M +LL AGY++ V++R ++ GA A + ++A Q DV+
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ V+ V L + G + G +PG +++DM++ P + E++AA +K +DAPV
Sbjct: 64 TMLPNSPHVKEVALGEN-GIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPV 122
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SGG+ A GTL++ GGD+++ K L M V + G G G KLANQ+ +A
Sbjct: 123 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALN 182
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
+ + E +V A KAG+N +L AI G AGS LD ++ R+F+PGF ++ +KDL
Sbjct: 183 IAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242
Query: 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339
L +G LP A ++ +LKA G G AL E+L V
Sbjct: 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKV 292
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 2e-69
Identities = 109/292 (37%), Positives = 168/292 (57%), Gaps = 2/292 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+MG M +L AGY + V A LL GA A++ + Q+DV+F
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
++V V V + G + G +PG +VDM++ P + + A K +DAPV
Sbjct: 61 TMVPDSPQVEEVAFGEN-GIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPV 119
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SGG+ GA GTL+I GGD++V ++ PLF +GK + +GG+G GQ K+ANQI +A
Sbjct: 120 SGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALN 179
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
+ + E +V+A KAG++ A+ G AGS L++ G R++ R F+PGF ++ KDL
Sbjct: 180 IEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDL 239
Query: 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
+ L + +G LP A Q+L+ +L+A+G G L AL+ ALE L N ++
Sbjct: 240 NLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANHKV 291
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 1e-59
Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
+IG+IG GVMG M +LL AGYTVTV+NRT K + L+ GA A SP + +DVV
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
++V + V V+L G L GL+PG II+D +TS+P + + K +DAP
Sbjct: 61 ITMVPAGAAVDAVILGE-DGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAP 119
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS 212
VSGG+ GA+ GTL+I GGDE +++ P+ MG V + G
Sbjct: 120 VSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIGP 163
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-51
Identities = 104/292 (35%), Positives = 163/292 (55%), Gaps = 3/292 (1%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+MG M +L AG+ + V A LL +GA ++ + SD++F
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIF 60
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+V V VL + + L+ G IVDM++ P + + +DAPV
Sbjct: 61 IMVPDTPQVEEVLFGENGCTKASLK-GKTIVDMSSISPIETKRFARQVNELGGDYLDAPV 119
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SGG+ GA+ GTL+I GGDE+V +++ PLF L+GK + +GG+G GQ K+ANQI +A
Sbjct: 120 SGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALN 179
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
+ + E +++A KAG + A+ G A S+ L++HG R++KR F PGF + KDL
Sbjct: 180 IEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239
Query: 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
+ L+ + + L LP A Q+L+ + A+G L AL+ ALE + N +L
Sbjct: 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291
|
Length = 292 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 2e-39
Identities = 84/285 (29%), Positives = 130/285 (45%), Gaps = 9/285 (3%)
Query: 54 WIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV 113
+IG G MG M A+LL AG+ V VF+ + + GA A SP A +D V +++
Sbjct: 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60
Query: 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173
V V G L + G +++D +T +P A +L+ A++ +DAPVSGG
Sbjct: 61 PAGQHVISVYS-GDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGG 119
Query: 174 DRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVG 232
GA+ GTL GG P+ MG+ + + G G GQ AK+ N + + +M+G
Sbjct: 120 VGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIG 179
Query: 233 LVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG-------SRILKRDFEPGFFVNHF 285
E M K GL+ ++ +T + S D + ++ GF
Sbjct: 180 TAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALM 239
Query: 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALI 330
+KDLG+ ++ G P ALA+QLY G G ++I
Sbjct: 240 LKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVI 284
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 1e-37
Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 5/301 (1%)
Query: 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ 105
RIG+IG G MG M +HLL + ++V ++ + G +SP +A
Sbjct: 321 AKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKD 380
Query: 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA--AASSKNC 163
DV+ +V +V L GA+S L G IV +T P +L ++
Sbjct: 381 VDVLVIMVANEVQAENV-LFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDI 439
Query: 164 SAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYM--GGSGKGQFAKLA 221
+DAPVSGG + A GTL I A G + ++ + + + + Y+ GG G G K+
Sbjct: 440 KLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV 499
Query: 222 NQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFF 281
NQ+ + E M + + GLN + IS S + +L D+ P
Sbjct: 500 NQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSA 559
Query: 282 VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
++ FVKDLGI +E + + L +A QL+L+ A G G + A++ E L V++
Sbjct: 560 LDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGVKV 619
Query: 342 D 342
+
Sbjct: 620 E 620
|
Length = 1378 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 7e-28
Identities = 86/274 (31%), Positives = 133/274 (48%), Gaps = 5/274 (1%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
I +IG G MG M ++LL G+ + VF+ L+D GA A SP A+ ++ V +
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63
Query: 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171
++ VR VL +G GL +++DM+T P +L A +K S +D PV
Sbjct: 64 MLPNGDLVRSVLFG-ENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVG 122
Query: 172 GGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLANQ-ITIATT 229
A TGTL + AGG V++ P+ MG ++ GG G G KL N ++IA
Sbjct: 123 RTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALN 182
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDL-HGSRILKRDFEPGFFVNHFVKD 288
+ E V GL+ ++ L +S AAG +++LK D P F ++ KD
Sbjct: 183 ALS-AEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241
Query: 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEG 322
LGI L + + +P A ++++Y +A G G
Sbjct: 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRG 275
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 5/297 (1%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
+G++G + + + LL +G+ V F + + ++G H DSP A + +
Sbjct: 7 VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVV 66
Query: 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA--AASSKNCSAIDAP 169
++ +P V V GA GL+ G +I+ +T P +L + +DA
Sbjct: 67 VLSHPDQVDDVFFGDE-GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYM--GGSGKGQFAKLANQITIA 227
VS G G L I A G + + P + M + Y G G G K+ N++
Sbjct: 126 VSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEG 185
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287
+V E M +AG++ + + IS A S H +LK D+ G F+N V+
Sbjct: 186 IHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQ 245
Query: 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDNA 344
+LGI L +++ LP LA+A Q +S + +G+ +L E++ V + A
Sbjct: 246 NLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNILEA 302
|
Length = 1378 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 21/181 (11%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD--- 107
++G IG G MG +M LL G+ V ++R + L + GA ADS L ++
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPR 61
Query: 108 VVFSIV--GYPSDVRHVLLHPSSGALSG-LRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
VV+ +V G + L+ L PG I++D S + + K
Sbjct: 62 VVWLMVPAGEI--TDATI-----DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 165 AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM------GKVNYMGGSGKGQFA 218
+D SGG G + G + GGD+ V++L P+F + G + + G G G F
Sbjct: 115 FVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRAEDGYL-HAGPVGAGHFV 172
Query: 219 K 219
K
Sbjct: 173 K 173
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ---SDV 108
IG IG G MG ++ LL+ G+ V ++ + + L D GA A S L ++ +
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168
V+ +V V+ + L G I++D S + + + K +D
Sbjct: 63 VWLMVPAGDITDAVIDDLA----PLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV 118
Query: 169 PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA--LMGKVNY--MGGSGKGQFAKLANQI 224
SGG GA+ G + GGDE V++L P+F G+ Y G SG G F K
Sbjct: 119 GTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVK----- 172
Query: 225 TIATTMV--GLVEGMVYAHKAGLNV 247
MV G+ GM+ A G +
Sbjct: 173 -----MVHNGIEYGMMQAIAEGFEL 192
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 28/208 (13%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD--- 107
++G IG G MG +M L G+ V ++ +G S L S+ +
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPR 61
Query: 108 VVFSIVGYPSDVRHVL--LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165
++ +V V+ L+P L PG I+VD S + + +
Sbjct: 62 TIWVMVPAGEVTESVIKDLYPL------LSPGDIVVDGGNSRYKDDLRRAEELAERGIHY 115
Query: 166 IDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN----YMGGSGKGQFAKLA 221
+D SGG G + G + GGD+ + +L P+F + + G G G F K
Sbjct: 116 VDCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLK-- 172
Query: 222 NQITIATTMV--GLVEGMVYAHKAGLNV 247
MV G+ GM+ A+ GL +
Sbjct: 173 --------MVHNGIEYGMMQAYAEGLEL 192
|
Length = 299 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 40/194 (20%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
IG IG VMG ++ ++ + G+TV+V+NRT K LA+
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEF------LAEHAKGK--------K 47
Query: 112 IVGYPS---------DVRHVLLHPSSGA---------LSGLRPGGIIVDMTTSEPSLASE 153
IVG S R ++L +GA L L G II+D S
Sbjct: 48 IVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER 107
Query: 154 LSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN----- 207
+K + + VSGG+ GA+ G +I GG + P+F + KV+
Sbjct: 108 RYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCC 166
Query: 208 -YMGGSGKGQFAKL 220
++G G G + K+
Sbjct: 167 TWIGPDGAGHYVKM 180
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 55 IGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLD-----IGAHLADSPHSLASQSDV 108
IG G M R HLL+ G +T+ NRTL KA+ L + A D L +++D+
Sbjct: 18 IGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFPVGGEALPLDELEELLAEADI 77
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDM 143
V S P ++ + + VD+
Sbjct: 78 VISATSAP----TPIITKEMVEEALKARPLLFVDI 108
|
This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
IG IG VMG ++ ++ + GYTV V+NRT K LA+ +
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEF------LAERAKGK--------N 51
Query: 112 IVGYPS---------DVRHVLLHPSSGA---------LSGLRPGGIIVDMTTSEPSLASE 153
IV S R +LL +G L L G II+D S
Sbjct: 52 IVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIR 111
Query: 154 LSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN----- 207
+ S K + VSGG+ GA+ G +I GG + + + P+ + KV+
Sbjct: 112 RNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPCC 170
Query: 208 -YMGGSGKGQFAK 219
++G G G F K
Sbjct: 171 TWIGPDGAGHFVK 183
|
Length = 473 |
| >gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 12 RSRTAHSY-SLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN 70
RS T ++S+SS L +R + + ++ IG G MG + HL
Sbjct: 149 RSETGIGKGAVSISSAAVELAKRI-------FGSL--KDKKVLVIGAGEMGELVAKHLAE 199
Query: 71 AGYT-VTVFNRTLSKAQPL---LDIGAHLADSPHSLASQSDVVFS 111
G +T+ NRTL +A+ L L A + +++DVV S
Sbjct: 200 KGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVIS 244
|
Length = 414 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD--SPHSLAS----- 104
IG GT +G+++ LL AG+ VTVFNR +K + + D +L
Sbjct: 6 IG--GTRFIGKALVEELLAAGHDVTVFNRGRTKPDLPEGVEHIVGDRNDRDALEELLGGE 63
Query: 105 QSDVVFSIVGY-PSDVRHVL 123
DVV + Y P V L
Sbjct: 64 DFDVVVDTIAYTPRQVERAL 83
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLDI--GAHLADSPHSLAS 104
IG+IGTG MG + L +G +T+ NRT +KA + + G H+A + + S
Sbjct: 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS 61
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
QSD++F V P D+ + LL L +V +T+ P +L +
Sbjct: 62 QSDLIFICVK-PLDI-YPLLQK---LAPHLTDEHCLVSITS--PISVEQLETLVPCQVAR 114
Query: 165 AI 166
I
Sbjct: 115 II 116
|
Length = 273 |
| >gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 12 RSRTA-HSYSLSVSSL-VTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLL 69
R+ T ++S+SS V L + ++ IG G MG HL
Sbjct: 149 RTETGISRGAVSISSAAVELAEKIFGNLKGK----------KVLVIGAGEMGELAAKHLA 198
Query: 70 NAGYT-VTVFNRTLSKAQPL---LDIGAHLADSPHSLASQSDVVFSIVGYP 116
G +T+ NRT +A+ L L A D L +++DVV S G P
Sbjct: 199 AKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAP 249
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 311 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 21/204 (10%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPH--SLASQSD 107
++G IG G MG ++ L G+ ++ + + D +A+ S
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPR 61
Query: 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167
VV+ +V P + +L + L G I++D S + K +D
Sbjct: 62 VVWVMV--PHGIVDAVLEELAPTLEK---GDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116
Query: 168 APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN----YMGGSGKGQFAKLANQ 223
SGG G + G GGD + PLFA + Y G G G F K+ +
Sbjct: 117 CGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHN 175
Query: 224 ITIATTMVGLVEGMVYAHKAGLNV 247
G+ GM+ A G +
Sbjct: 176 --------GIEYGMMAAIAEGFEI 191
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 55 IGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPL---LDIGAH-LADSPHSLASQSDVV 109
IG G MG + HL G +TV NRTL +A+ L A L + P +LA ++D+V
Sbjct: 188 IGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALA-EADIV 246
Query: 110 FSIVGYP 116
S G P
Sbjct: 247 ISSTGAP 253
|
Length = 423 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSP-HSLASQSDV 108
+RIG G VMG+++ ++ G+ ++V+NRT SK ++ + P + D
Sbjct: 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDF 66
Query: 109 VFSIVGYPSDVRHVLLHPSSGA--------LSG-LRPGGIIVDMTTSEPSLASELSAAAS 159
V SI R V++ +GA LS + PG I+D A+
Sbjct: 67 VLSI----QKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA 122
Query: 160 SKNCSAIDAPVSGGDRGAKTGTLAIFAGGD-------ESVVQKLNPLFALMGKVNYMGGS 212
K + VSGG+ GA+ G ++ GG E +++K+ V Y+G
Sbjct: 123 EKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG 181
Query: 213 GKGQFAKL 220
G G F K+
Sbjct: 182 GAGNFVKM 189
|
Length = 493 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 23/186 (12%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------AQPLLDIGAH-LADSPHS 101
IG IG VMG+++ ++ + G+ ++V+NRT K G H L + +S
Sbjct: 4 IGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNS 63
Query: 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161
L V+ I + V + L L G II+D K
Sbjct: 64 LKKPRKVILLIKAGEA-VDETI----DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK 118
Query: 162 NCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN------YMGGSGK 214
+ VSGG+ GA+ G ++ GG++ + + KV Y+G
Sbjct: 119 GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSS 177
Query: 215 GQFAKL 220
G + K+
Sbjct: 178 GHYVKM 183
|
Length = 470 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 6e-05
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYT---VTVFNRTLSKAQPLLD-IGAHLADSPHSLAS 104
+IG+IG G M ++ LL +G + V + + K L + G A A
Sbjct: 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQ 61
Query: 105 QSDVVF 110
++DVV
Sbjct: 62 EADVVV 67
|
Length = 267 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTV-FNRTLSKAQPLLDIGAHLA--DSPHSLASQSD 107
+IG IG G MG ++ L AG+ V + +R KA L + A S ++D
Sbjct: 1 KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEELGVKATAVSNEEAVEEAD 60
Query: 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMT 144
VVF V P D VL L+ L G +++ +T
Sbjct: 61 VVFLAVK-PEDAPEVL-----AELADLLKGKLVISIT 91
|
Length = 93 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYT----VTVFNRTLSKAQPLLD-IGAHLADSPHSLAS 104
+IG+IG G MG ++ + LL +G + V NR+ K L G
Sbjct: 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE 61
Query: 105 QSDVVF 110
++DVVF
Sbjct: 62 EADVVF 67
|
Length = 266 |
| >gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDV 108
N + IG G +++ LL A V + NRT+SKA+ L +
Sbjct: 117 NQNVLIIGAGGAAKAVALELLKADCNVIIANRTVSKAEELAERFQRYG---------EIQ 167
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSG-----------LRPGGIIVDMTTSEPSLASELSAA 157
FS+ P ++++ +S +SG L+ G ++ D+ + L + A
Sbjct: 168 AFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEYLKEGKLVYDLVYNP--LETPFLAE 225
Query: 158 ASSKNCSAID 167
A S ID
Sbjct: 226 AKSLGTKTID 235
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHL----ADSPHSLAS---QS 106
TG G S+ L AG+ V R A+ L G L D SL
Sbjct: 6 ATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGV 65
Query: 107 DVVFSIVGYPSDV 119
DVVFS+ G+
Sbjct: 66 DVVFSVTGFWLSK 78
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 43 DPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDI-----GAHLA 96
PV T R+ +G G R++ L AG +TV NRT +A+ L D+ A A
Sbjct: 120 LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEA 179
Query: 97 DSPHSL--ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASEL 154
+ L ++D++ I P + S L G I+ D+ + L + L
Sbjct: 180 AALADLEGLEEADLL--INATPVGM-AGPEGDSPVPAELLPKGAIVYDVVYN--PLETPL 234
Query: 155 SAAASSKNCSAID 167
A ++ ID
Sbjct: 235 LREARAQGAKTID 247
|
Length = 283 |
| >gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD------IGAHLADSP 99
++ +G G R++ L G + + NRTL KA+ L + I D
Sbjct: 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLE 76
Query: 100 HSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAAS 159
LA ++D++ + P ++ S L+PGG++ D+ + L + L A
Sbjct: 77 ELLA-EADLIINTT--PVGMKPG--DELPLPPSLLKPGGVVYDVVYNP--LETPLLKEAR 129
Query: 160 SKNCSAID 167
+ ID
Sbjct: 130 ALGAKTID 137
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155 |
| >gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQSD 107
+I IG TG +G+ L G+ V V R K + + +G A+ A +D
Sbjct: 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDAD 60
Query: 108 VVFSIVGYPSDV-----RHVLLHPSSGALSGLRPGGIIVDMT 144
+V I+ P +V + V H ++ G +++D+T
Sbjct: 61 IV--IISVPINVTEDVIKEVAPH--------VKEGSLLMDVT 92
|
Length = 437 |
| >gnl|CDD|215101 PLN00203, PLN00203, glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 23/112 (20%)
Query: 12 RSRTA-HSYSLSVSS----LVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCA 66
R+ T S ++SVSS L + L S A+ R+ IG G MG+ +
Sbjct: 235 RTETNIASGAVSVSSAAVELALMKLPESSHASA-----------RVLVIGAGKMGKLLVK 283
Query: 67 HLLNAGYT-VTVFNRTLSKAQ------PLLDIGAHLADSPHSLASQSDVVFS 111
HL++ G T + V NR+ + P ++I D + A+++DVVF+
Sbjct: 284 HLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335
|
Length = 519 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.97 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.97 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.96 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.96 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.95 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.94 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.93 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.93 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.93 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.93 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.92 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.92 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.91 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.91 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.9 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.9 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.89 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.88 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.87 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.86 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.86 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.86 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.86 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.85 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.85 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.85 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.85 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.84 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.83 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.83 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.82 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.82 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.82 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.82 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.81 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.79 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.79 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.78 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.77 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.75 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.75 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.74 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.73 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.73 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.73 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.69 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.67 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.66 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.66 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.65 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.65 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.65 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.64 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.63 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.63 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.61 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.61 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.57 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.56 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.56 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.55 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.53 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.53 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.52 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.5 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.48 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.44 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.43 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.42 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.39 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.38 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.33 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.32 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.31 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 99.29 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.28 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.26 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.26 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.25 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.24 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.22 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.17 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.17 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.16 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.14 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.14 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.13 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.12 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.11 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.1 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.08 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.07 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.06 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.05 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.02 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.02 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.98 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.97 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.97 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.96 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.95 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.95 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.94 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.9 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.9 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.89 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.88 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.88 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.88 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.87 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.85 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 98.85 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.82 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.81 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 98.79 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.76 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.74 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 98.72 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.71 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.68 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.64 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.63 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.63 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.59 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 98.59 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.59 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.54 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.5 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.49 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.48 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.47 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 98.47 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 98.45 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.44 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 98.43 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.42 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.42 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.41 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.4 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.39 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 98.38 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.38 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.37 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.37 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.35 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.34 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.33 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.31 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.31 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.3 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.3 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.3 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.3 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.26 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.25 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.24 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.23 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 98.22 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.21 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.18 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 98.17 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.15 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.14 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.14 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.13 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.13 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.12 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 98.11 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.1 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.09 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.05 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.04 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.04 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.03 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.02 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.01 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.01 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 98.0 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.99 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.98 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.96 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.95 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.95 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.93 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.93 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.93 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.9 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.9 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.88 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.87 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.87 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.86 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.84 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.82 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.8 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.79 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.78 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.77 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.77 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.76 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.75 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.74 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.74 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.74 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.72 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.7 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.68 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.67 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.65 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.65 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.63 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.62 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.61 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.61 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.6 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.58 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.58 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.58 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.55 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.54 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.54 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.51 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.5 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.5 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.5 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 97.49 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.49 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.48 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.45 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.45 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.44 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.43 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.42 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.39 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 97.38 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 97.37 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.36 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.35 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.33 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.33 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.29 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.29 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.27 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.27 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.26 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.24 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.24 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.23 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.22 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.21 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.18 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.18 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.17 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.17 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.17 | |
| PLN00106 | 323 | malate dehydrogenase | 97.16 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.16 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.14 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.14 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.14 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.14 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.14 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.08 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.08 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.07 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 97.05 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.03 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.01 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 97.01 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.99 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.98 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.98 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.98 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.97 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.95 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.92 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.91 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.9 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.9 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 96.89 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.88 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.88 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.88 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.85 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.79 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.78 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.77 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.77 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.75 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 96.71 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.71 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.71 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.7 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.7 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.69 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.68 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.67 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.64 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.64 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.63 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.62 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.55 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.53 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 96.51 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.51 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.51 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.49 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.49 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.45 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.43 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.43 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.42 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.41 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.41 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.41 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.37 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.37 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.36 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.34 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.34 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 96.33 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.32 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.31 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 96.3 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.28 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 96.27 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 96.27 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.25 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.24 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.24 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.23 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.22 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 96.22 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.21 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 96.21 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.2 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.2 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.2 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.19 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.18 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.17 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 96.17 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.17 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.14 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.13 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 96.12 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.11 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.1 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.07 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 96.07 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.05 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.04 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.03 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.02 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.01 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.99 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.98 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 95.98 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.96 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.96 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.96 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.96 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.94 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.94 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.92 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.92 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.92 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 95.9 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.9 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 95.89 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.89 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.85 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.83 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.83 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.81 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 95.8 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.79 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 95.74 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.72 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.71 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.7 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.68 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.66 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.63 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 95.63 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.62 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 95.61 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.6 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.58 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.57 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.55 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.53 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.52 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.51 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 95.5 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.49 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.47 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.46 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.43 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.43 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.41 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.4 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.36 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 95.33 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.33 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.31 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 95.26 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 95.26 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.24 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.21 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.2 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.18 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.18 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.13 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.12 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.09 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.06 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 95.05 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.04 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 95.03 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 95.01 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.0 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 94.99 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.98 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.97 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 94.97 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.96 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.96 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 94.95 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 94.95 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 94.95 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.94 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.92 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 94.89 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 94.85 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 94.83 | |
| PRK05569 | 141 | flavodoxin; Provisional | 94.82 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.78 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 94.75 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 94.73 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.7 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.69 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.67 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 94.67 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.66 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 94.64 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 94.62 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 94.62 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.62 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.61 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.6 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 94.6 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.6 | |
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 94.59 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 94.57 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 94.54 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 94.51 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.48 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.48 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 94.46 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 94.45 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.45 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 94.43 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 94.42 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 94.4 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 94.39 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 94.37 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 94.36 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 94.35 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.34 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=367.04 Aligned_cols=284 Identities=45% Similarity=0.694 Sum_probs=274.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+||+|||+|.||..||.+|.++||+|++|||++++ .+.+.+.|.....++.|++..+|+||+|+|++.++++++.++.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~- 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN- 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc-
Confidence 58999999999999999999999999999999999 6666677999999999999999999999999999999998766
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
.+.+.+++++++||+||++|..++++.+.+...|..|+|+|++|+...+..|++++++||+++.+++++++|+.+|. ++
T Consensus 80 g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~ 159 (286)
T COG2084 80 GLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIV 159 (286)
T ss_pred chhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceE
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k 287 (351)
++|+.|.++..|+++|++...++.++.|++.++++.|++++.+.+++..+..++|.++.+.+++.+++|.|+|.++.+.|
T Consensus 160 ~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~K 239 (286)
T COG2084 160 HVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLK 239 (286)
T ss_pred EECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 288 d~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
|++++.+.+++.|+++|+...+.++++.+.+.|+++.|++++++.++
T Consensus 240 Dl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 240 DLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999999999999999998764
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=350.45 Aligned_cols=293 Identities=44% Similarity=0.729 Sum_probs=283.3
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++++++|||||+|.||..|+.+|.++||.|++|||+.++.+.|.+.|..+..++.|+++++|+||.|+|++.++++++.+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccCCCCCcEE-EecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhC
Q 018694 126 PSSGALSGLRPGGII-VDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG 204 (351)
Q Consensus 126 ~~~~i~~~l~~~~~i-i~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g 204 (351)
.. ++...+++++.. ||+|++.|.+++++.+.+..++..|+|+|++|+...++.|.++|+++||++.++++.++|+.+|
T Consensus 112 ~~-Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mG 190 (327)
T KOG0409|consen 112 KS-GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMG 190 (327)
T ss_pred CC-cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhc
Confidence 77 888888888877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchh
Q 018694 205 K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283 (351)
Q Consensus 205 ~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
+ ++++|..|.+...|+++|++...++..++|++.++++.|++...+.++++.+...|+++....|.+..++|.|+|.++
T Consensus 191 k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~ 270 (327)
T KOG0409|consen 191 KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALK 270 (327)
T ss_pred ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHH
Confidence 8 999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCC
Q 018694 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339 (351)
Q Consensus 284 ~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~ 339 (351)
+++||++.+.+.+++.+.|+|+....+++++.+++.|+++.|++.+++.+++..+.
T Consensus 271 ~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 271 LMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999988764
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=338.28 Aligned_cols=289 Identities=36% Similarity=0.608 Sum_probs=270.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
|||+|||+|.||..|+.+|.++|++|++|||++. .+.+.+.|.....++.++++++|+||+|+|.+.++++++.+.. +
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~-g 78 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGEN-G 78 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCc-c
Confidence 5899999999999999999999999999999874 5667777888888999999999999999988889999987443 5
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
+.+.+.++++|||++|..|..++++.+.+.++|+.|+++|++|++..++.|++.++++|+++.+++++++|+.++. ++|
T Consensus 79 ~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~ 158 (292)
T PRK15059 79 CTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITL 158 (292)
T ss_pred hhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEE
Confidence 6667788999999999999999999999998999999999999999999999999999999999999999999998 999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHH
Q 018694 209 MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288 (351)
Q Consensus 209 ~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 288 (351)
+|+.|.+...|+++|++...++.++.|++.++++.|++++++.+++..+.+.+++++.+.+++.+++|.++|+++.+.||
T Consensus 159 ~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KD 238 (292)
T PRK15059 159 VGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKD 238 (292)
T ss_pred eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCc
Q 018694 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVR 340 (351)
Q Consensus 289 ~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 340 (351)
++++++++++.|+++|+.+.+.++++.+.+.|+++.|++++++.+++..|..
T Consensus 239 l~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~~~ 290 (292)
T PRK15059 239 LNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHK 290 (292)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999877654
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=336.91 Aligned_cols=290 Identities=29% Similarity=0.452 Sum_probs=270.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+||+|||+|.||..|+..|.++|++|++|||++++.+.+.+.|...+.++.+++.++|+||+|+|++.++++++.+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~- 79 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGEN- 79 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcc-
Confidence 4699999999999999999999999999999999999999888888888999999999999999988778999987544
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.+++++|+++++.|..++++.+.+.++++.|+++|+++++..+..|++.+++||+++.+++++++|+.+|. ++
T Consensus 80 ~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 80 GVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELI 159 (296)
T ss_pred cHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeE
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhh-hhcccCCCCCccchhhHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG-SRILKRDFEPGFFVNHFV 286 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (351)
++|+.|.+...|+++|++...+..+++|++.++++.|++++.+.+++..+..+++.+.... +++.+++|.++|+++.+.
T Consensus 160 ~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 239 (296)
T PRK15461 160 NAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAH 239 (296)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHH
Confidence 9999999999999999999999999999999999999999999999998876666666554 478899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCC
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~ 339 (351)
||++++.++++++|+++|+.+.+.++++.+.+.|+|+.|++++++.+++..|+
T Consensus 240 KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 240 KDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999988776
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=323.77 Aligned_cols=294 Identities=34% Similarity=0.606 Sum_probs=273.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|...++++++++.++|+||+|+|.+.+++.++...+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~ 80 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGEN 80 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcc
Confidence 35899999999999999999999999999999999998888888888888999999999999999988888998885322
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
++.+.+.++++|+|++++.|...+++.+.+..++++|+++|+++++.....+.+.++++|+++.++.+.++|+.++. +
T Consensus 81 -~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~ 159 (296)
T PRK11559 81 -GIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 159 (296)
T ss_pred -hHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCe
Confidence 56777889999999999999999999999988899999999999988888888889999999999999999999998 8
Q ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHH
Q 018694 207 NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286 (351)
Q Consensus 207 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
+++|+.|.+...|+++|.+......+++|++.++++.|++.+++.+.+..+...++.++...+++.+++|.++|+++...
T Consensus 160 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~ 239 (296)
T PRK11559 160 VHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 239 (296)
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHH
Confidence 89999999999999999999999999999999999999999999999998888888898888889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCccc
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLD 342 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 342 (351)
||+++++++++++|+++|+++.+.+.++.+.+.|+++.|++++++++++..|++|+
T Consensus 240 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 295 (296)
T PRK11559 240 KDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKVEVT 295 (296)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999998888665
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=317.26 Aligned_cols=290 Identities=38% Similarity=0.660 Sum_probs=270.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA 130 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i 130 (351)
||+|||+|.||..|+..|.+.|++|++|||++++.+.+.+.|....++..++++++|+||+|+|...++++++.... ++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~-~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGEN-GI 79 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcc-hH
Confidence 59999999999999999999999999999999999998888888888999999999999999988888888875322 45
Q ss_pred ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEc
Q 018694 131 LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 131 ~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
...+.++++||+++++.|...+++.+.+..++++|+++|+++++.....+.+.++++|+++.++.++++++.++. ++++
T Consensus 80 ~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~ 159 (291)
T TIGR01505 80 IEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLV 159 (291)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEe
Confidence 566788999999999999999999999988899999999999988888888899999999999999999999998 9999
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHH
Q 018694 210 GGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289 (351)
Q Consensus 210 g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 289 (351)
++.|.+...|+++|.+....+.+++|++.++++.|++++++.+++..+..+++.++.+.+.+.+++|.++|+++++.||+
T Consensus 160 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl 239 (291)
T TIGR01505 160 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDL 239 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888899998888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcc
Q 018694 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341 (351)
Q Consensus 290 ~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 341 (351)
.++.+++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+++.+++.|
T Consensus 240 ~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~~ 291 (291)
T TIGR01505 240 NLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANHKV 291 (291)
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999998887654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=315.80 Aligned_cols=279 Identities=30% Similarity=0.471 Sum_probs=259.5
Q ss_pred EEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccC
Q 018694 54 WIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSG 133 (351)
Q Consensus 54 iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~ 133 (351)
|||+|.||.+|+.+|.++|++|++|||++++.+.+.+.|....+++.++++++|+||+|+|++.++++++.+.. ++.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~-~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDE-GILPK 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcc-hHhhc
Confidence 68999999999999999999999999999999999988988888999999999999999988888999984333 77777
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCc
Q 018694 134 LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS 212 (351)
Q Consensus 134 l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~ 212 (351)
+.+++++|++++..|.+.+++.+.+.++|+.|+++|++|++..+..+++.+++||+++.+++++++|+.+|. ++++|+.
T Consensus 80 ~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~ 159 (288)
T TIGR01692 80 VAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDH 159 (288)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCC
Confidence 889999999999999999999999988999999999999999999999999999999999999999999998 9999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-------hcccCCCCCccchhhH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-------RILKRDFEPGFFVNHF 285 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~ 285 (351)
|.+...|+++|.+....+.+++|++.++++.|++++.+.+++..+.+.++....+.+ .+.+++|.++|++..+
T Consensus 160 g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 239 (288)
T TIGR01692 160 GAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALM 239 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHH
Confidence 999999999999999999999999999999999999999999998887777765543 2366899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~ 333 (351)
.||++++.+++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+
T Consensus 240 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 240 LKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 999999999999999999999999999999999999999999999875
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=363.61 Aligned_cols=295 Identities=25% Similarity=0.403 Sum_probs=281.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.||||||+|.||..||.+|.++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.++++++.+.. +
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~-g 83 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE-G 83 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh-h
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999997554 6
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCC--CcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKN--CSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~--~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
+.+.+.+++++||+||..|..++++.+.+..+| +.|+|+|++|++..+..|++.+++||+++.+++++++|+.+|. +
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 777888999999999999999999999998888 8999999999999999999999999999999999999999998 6
Q ss_pred EE-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhH
Q 018694 207 NY-MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHF 285 (351)
Q Consensus 207 ~~-~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
++ +|+.|++..+|+++|++...++.+++|++.++++.|++++.+++++..+.+.++.++.+.+.+.+++|.++|+++.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~ 243 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL 243 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence 65 58899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcccccc
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDNAV 345 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ 345 (351)
.||++++++++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+++..|+.+.++-
T Consensus 244 ~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~ 303 (1378)
T PLN02858 244 VQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNILEAA 303 (1378)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999887763
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=352.56 Aligned_cols=297 Identities=28% Similarity=0.462 Sum_probs=278.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.++||||||+|+||..||.+|.+.|++|++|||++++.+.+.+.|.....++.++++++|+||+|+|.+.++++++.+..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 45899999999999999999999999999999999999999888887888999999999999999988999999986433
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhc--CCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASS--KNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~--~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~ 205 (351)
++.+.+.+++++|++||+.|...+++.+.+.. +++.|+++|++|++..+..|++.+++||+++.+++++++|+.++.
T Consensus 403 -g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~ 481 (1378)
T PLN02858 403 -GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSE 481 (1378)
T ss_pred -hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhC
Confidence 56677889999999999999999999999987 899999999999999999999999999999999999999999998
Q ss_pred -eEE-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchh
Q 018694 206 -VNY-MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283 (351)
Q Consensus 206 -~~~-~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
+++ .++.|++..+|+++|++...++.+++|++.++++.|++++.+++++..+.+.++.+..+.+.+.+++|.++|+++
T Consensus 482 ~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~ 561 (1378)
T PLN02858 482 KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALD 561 (1378)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhH
Confidence 666 467999999999999999999999999999999999999999999999988899999899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcccccc
Q 018694 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDNAV 345 (351)
Q Consensus 284 ~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ 345 (351)
.+.||++++.+++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+++..|+.+...-
T Consensus 562 l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~ 623 (1378)
T PLN02858 562 IFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGVKVEGRL 623 (1378)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999885543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=305.59 Aligned_cols=266 Identities=22% Similarity=0.346 Sum_probs=243.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCc---ccCCHHHhhcC---CCEEEEecCCh
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAH---LADSPHSLASQ---SDVVFSIVGYP 116 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~~~~~~---~DiIi~~vp~~ 116 (351)
..+++|||||+|.||..||.+|+++|++|++|||++++.+.+.+. |.. .+.+++++++. +|+||+|+|.+
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 346789999999999999999999999999999999999888764 543 67889998876 99999999999
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHH
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKL 196 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v 196 (351)
.++++++. ++.+.+.++++|||++|+.+..++++.+.+.++|++|+++|++|++.++..|+ .+++||++++++++
T Consensus 84 ~aV~~Vi~----gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v 158 (493)
T PLN02350 84 APVDQTIK----ALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNI 158 (493)
T ss_pred HHHHHHHH----HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHH
Confidence 99999998 88899999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHhhC------c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhcCCCCchhhh
Q 018694 197 NPLFALMG------K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNA---ISTGAAGSKSLD 265 (351)
Q Consensus 197 ~~ll~~~g------~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~---~~~~~~~s~~~~ 265 (351)
+++|+.++ . ++|+|+.|++..+|+++|.+....+++++|++.++++ .|++++++.++ ++.+.+.|+.++
T Consensus 159 ~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~lle 238 (493)
T PLN02350 159 EDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIE 238 (493)
T ss_pred HHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHH
Confidence 99999998 3 8999999999999999999999999999999999998 59999999988 557778899999
Q ss_pred hhhhhcccCC-CCCccchhhHHHHHH------HHHHHHHhcCCCCcH-HHHHHHHHHHHH
Q 018694 266 LHGSRILKRD-FEPGFFVNHFVKDLG------ICLKECQNMGLALPG-LALAQQLYLSLK 317 (351)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~gv~~p~-~~~~~~l~~~~~ 317 (351)
.+.+.+..++ +.++|.++.+.||++ ++.+.+.+.|+|+|+ .+++...+.+..
T Consensus 239 i~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 239 ITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGL 298 (493)
T ss_pred HHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhcc
Confidence 8888877774 888999999999999 999999999999999 777777766654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=290.03 Aligned_cols=278 Identities=22% Similarity=0.273 Sum_probs=252.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcC---CCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ---SDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||..++.+|.+.|++|++|||++++.+.+.+.|...+.++++++++ +|+||+|+|++.++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-- 78 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-- 78 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH--
Confidence 58999999999999999999999999999999999888888888888899998765 6999999987779999998
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.+++++|+++++.|....++.+.+.++++.|+++|++|++..+..|. .++++|+++.+++++++|+.++.
T Consensus 79 --~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~ 155 (299)
T PRK12490 79 --DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPE 155 (299)
T ss_pred --HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCc
Confidence 88888889999999999999999999999988899999999999999999987 79999999999999999999984
Q ss_pred ---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCCc
Q 018694 206 ---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAG--LNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 206 ---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 279 (351)
++|+|+.|.+...|+++|++....+.+++|++.++++.| ++++.++++++.+. ..+++++...+.+.++++ .
T Consensus 156 ~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~ 233 (299)
T PRK12490 156 GPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--L 233 (299)
T ss_pred CCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--h
Confidence 899999999999999999999999999999999999999 99999999999644 778888888887766543 2
Q ss_pred cchhhHHHHH---HHHHHHHHhcCCCCcHHHHHH-HHHHHHHHcCCCCCChHHHHHHHH
Q 018694 280 FFVNHFVKDL---GICLKECQNMGLALPGLALAQ-QLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 280 ~~~~~~~kd~---~~~~~~a~~~gv~~p~~~~~~-~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
+.++...||+ +++++.+++.|+|+|++..+. .++....+++.|..|.+++.+.+.
T Consensus 234 ~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 234 AGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 4678889998 799999999999999999995 888888888888888888876654
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=275.32 Aligned_cols=277 Identities=23% Similarity=0.309 Sum_probs=243.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcC---CCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ---SDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||..++.+|.+.|++|++|||++++.+.+.+.|+...++++++++. +|+||+|+|+...+++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-- 78 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-- 78 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH--
Confidence 58999999999999999999999999999999999999988899888899988875 6999999977778899988
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.+++++|+++++.+..+.++.+.+.++|+.|+|+|++|++..+..|. .+++||+++.+++++++|+.++.
T Consensus 79 --~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~ 155 (301)
T PRK09599 79 --ELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPR 155 (301)
T ss_pred --HHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHccc
Confidence 78888889999999999999999999999988999999999999999998885 89999999999999999999986
Q ss_pred ----eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCC
Q 018694 206 ----VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK--AGLNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEP 278 (351)
Q Consensus 206 ----~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 278 (351)
++++|+.|++..+|+++|.+....+.++.|++.++++ .|++++++.++++.+. ..++.++...+.+.++ +
T Consensus 156 ~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~ 232 (301)
T PRK09599 156 AEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---P 232 (301)
T ss_pred ccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---C
Confidence 7899999999999999999999999999999999999 9999999999999875 5788888887777443 2
Q ss_pred ccc-hhhHHHH---HHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 279 GFF-VNHFVKD---LGICLKECQNMGLALPGLAL-AQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 279 ~~~-~~~~~kd---~~~~~~~a~~~gv~~p~~~~-~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
.+. +....|| ++++++.+.+.|+++|++.+ ++..+....+.|.+..|.+++.+.+.
T Consensus 233 ~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 233 KLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred CHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 222 3233445 58899999999999999999 44457777788888888887766643
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=257.52 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=240.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh---cCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA---SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~---~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||..|+.+|.++|++|.+|||++++.+.+.+.|.....+++++. .++|+||+|+|.. .++++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-- 77 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-- 77 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH--
Confidence 589999999999999999999999999999999999999888877777776654 4689999999666 9999998
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.++++|||++++.+..+.++.+.+.+++++|+++|++|+..++..| ..++++|+++.++.++++|+.++.
T Consensus 78 --~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 78 --ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPE 154 (298)
T ss_pred --HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCc
Confidence 8888899999999999999888899988888889999999999999999888 588999999999999999999984
Q ss_pred ---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCCc
Q 018694 206 ---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKA--GLNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 206 ---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 279 (351)
++|+|+.|++..+|+++|.+....+.+++|++.++++. |++++++.++++.+. ..++.++...+.+.++++.+.
T Consensus 155 ~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~ 234 (298)
T TIGR00872 155 EQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE 234 (298)
T ss_pred CCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH
Confidence 79999999999999999999999999999999999998 579999999999876 588999888887777776665
Q ss_pred cchh-hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 280 FFVN-HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 280 ~~~~-~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+... ...+|.++++..+.+.|+|.|.+.+ .++.+...... +.-...+++..|...|
T Consensus 235 ~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~--al~~~~~~~~~-~~~~~~~~~~~r~~fg 291 (298)
T TIGR00872 235 FSGRVSDSGEGRWTVIAAIDLGVPAPVIAT--SLQSRFASRDL-DDFANKVLAALRKEFG 291 (298)
T ss_pred HHHHHHhhccHHHHHHHHHHhCCCHHHHHH--HHHHHHHhCCC-CCcHHHHHHHHHHhhC
Confidence 5433 3456678999999999999999877 44444443322 1234567788777665
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=266.50 Aligned_cols=257 Identities=19% Similarity=0.314 Sum_probs=222.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C--CcccCCHHHhhc---CCCEEEEecCChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G--AHLADSPHSLAS---QSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~~~~~---~~DiIi~~vp~~~~~ 119 (351)
|++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+. | +..+++++++++ ++|+||+|+|++..+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 5689999999999999999999999999999999998888764 4 346788999886 489999999899999
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHH
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPL 199 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~l 199 (351)
++++. ++.+.+.++++|||++|+.+..+.+..+.+.++|++|+++|++|++.+++.|. .+++||+++++++++++
T Consensus 81 ~~vi~----~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~pi 155 (470)
T PTZ00142 81 DETID----NLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDI 155 (470)
T ss_pred HHHHH----HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 99998 89999999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHhhCc-------eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---cCCCCchhhhhhh
Q 018694 200 FALMGK-------VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVELFLNAIS---TGAAGSKSLDLHG 268 (351)
Q Consensus 200 l~~~g~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~~---~~~~~s~~~~~~~ 268 (351)
|+.++. +.|+|+.|++..+||++|.+..+.+++++|++.+++ +.|++++++.+++. .+...|+.++.+.
T Consensus 156 L~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~ 235 (470)
T PTZ00142 156 LEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITA 235 (470)
T ss_pred HHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 999874 589999999999999999999999999999999998 79999999988884 6667788888877
Q ss_pred hhcccCCCCC-ccchhhHHH------HHHHHHHHHHhcCCCCcHHHHHH
Q 018694 269 SRILKRDFEP-GFFVNHFVK------DLGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 269 ~~~~~~~~~~-~~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
.-+...+-.. ++.++.+.. .-.|..+.|-+.|+|.|++....
T Consensus 236 ~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 236 KILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred HHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 7655443221 233333321 11488999999999999765543
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=259.67 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=219.7
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhc---CCCEEEEecCChhHHHHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLAS---QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~---~~DiIi~~vp~~~~~~~v 122 (351)
+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+. ++....+++++++ ++|+||+|+|++..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 48999999999999999999999999999999999888765 2556778888764 689999999888999999
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHh
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFAL 202 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~ 202 (351)
+. ++.+++.++++|||++|+.+..+.+..+.+.+++++|+++|++|++.++..|. .+++||+++++++++++|+.
T Consensus 81 i~----~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ 155 (467)
T TIGR00873 81 IN----QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQK 155 (467)
T ss_pred HH----HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHH
Confidence 98 89899999999999999999888888888888999999999999999999998 88999999999999999999
Q ss_pred hCc-e------EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hcCCCCchhhhhhhhhc
Q 018694 203 MGK-V------NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVELFLNAI---STGAAGSKSLDLHGSRI 271 (351)
Q Consensus 203 ~g~-~------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~ 271 (351)
++. + .|+|+.|++..+||++|.+...++++++|++.+++ +.|++.+++.+++ +.+...|+.++.+.+.+
T Consensus 156 ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~ 235 (467)
T TIGR00873 156 IAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADIL 235 (467)
T ss_pred HhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHH
Confidence 886 3 79999999999999999999999999999999885 7999999999988 56667889999888877
Q ss_pred ccCCCCCccchhhHHH------HHHHHHHHHHhcCCCCcHHHHH
Q 018694 272 LKRDFEPGFFVNHFVK------DLGICLKECQNMGLALPGLALA 309 (351)
Q Consensus 272 ~~~~~~~~~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~~ 309 (351)
..++-..++-++.+.. .-.|.++.|-+.|+|.|++...
T Consensus 236 ~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~a 279 (467)
T TIGR00873 236 KKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITES 279 (467)
T ss_pred hccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHH
Confidence 7655332222333221 1148899999999999976543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=248.56 Aligned_cols=244 Identities=23% Similarity=0.335 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhcC---CCEEEEecCChhHHHHHhhCCCCCcc
Q 018694 60 MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLASQ---SDVVFSIVGYPSDVRHVLLHPSSGAL 131 (351)
Q Consensus 60 mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v~~~~~~~i~ 131 (351)
||..||.+|+++|++|++|||++++.+.+.+. |+..+.+++++++. +|+||+|+|.+..+++++. ++.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~----~l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE----QLL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH----HHH
Confidence 89999999999999999999999999999874 47888999999874 8999999999999999998 899
Q ss_pred cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e----
Q 018694 132 SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V---- 206 (351)
Q Consensus 132 ~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~---- 206 (351)
+.+.++++|||++|+.+..+.+..+.+.++|++|+++|++|++.++..|. .+++||+++++++++++|+.++. +
T Consensus 77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~ 155 (459)
T PRK09287 77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGE 155 (459)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999987 5
Q ss_pred ---EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hcCCCCchhhhhhhhhcccCCCCCc
Q 018694 207 ---NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVELFLNAI---STGAAGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 207 ---~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~ 279 (351)
.|+|+.|++..+||++|.+....+++++|++.+++ +.|++.+++.+++ +.+...|+.++.+.+.+.++++..+
T Consensus 156 ~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~ 235 (459)
T PRK09287 156 PCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETG 235 (459)
T ss_pred CceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCC
Confidence 89999999999999999999999999999999999 5899999999988 4666789999999998888887443
Q ss_pred c-chhhHHHH------HHHHHHHHHhcCCCCcHHHH
Q 018694 280 F-FVNHFVKD------LGICLKECQNMGLALPGLAL 308 (351)
Q Consensus 280 ~-~~~~~~kd------~~~~~~~a~~~gv~~p~~~~ 308 (351)
. -++.+..- -.|..+.|-+.|+|.|++..
T Consensus 236 ~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 236 KPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred CcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 3 33333211 13889999999999997644
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=218.08 Aligned_cols=280 Identities=25% Similarity=0.355 Sum_probs=233.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc---CCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS---QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~---~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|+||+||+|.||..++.+|.+.||+|++||+|++..+.+...|++..+++++.+. .+.+|.+.||..+.+.++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-- 78 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-- 78 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH--
Confidence 6899999999999999999999999999999999999999999988889888764 68999999988889999999
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.++.+|||-.|+....+.+..+.+.+++++|+|+..+|+..+++.|. ++++||++++++.++++|+.+..
T Consensus 79 --~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~g 155 (300)
T COG1023 79 --DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPG 155 (300)
T ss_pred --HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcC
Confidence 99999999999999999999999999999999999999999999999998886 89999999999999999998765
Q ss_pred ---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CCCC
Q 018694 206 ---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAG--LNVELFLNAISTGA-AGSKSLDLHGSRILKR-DFEP 278 (351)
Q Consensus 206 ---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~ 278 (351)
+.|+|+.|+++++||++|.+..+++++++|.+.+.++.. ++.+++.++.+.+. .+||.++.+...+.+. +...
T Consensus 156 e~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q 235 (300)
T COG1023 156 EDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQ 235 (300)
T ss_pred cCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHH
Confidence 889999999999999999999999999999999988764 67788888888877 6789988776654432 2210
Q ss_pred ccchhhHHHH---HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHH-HHHHHHHhc-CCcc
Q 018694 279 GFFVNHFVKD---LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA-LILALERLN-NVRL 341 (351)
Q Consensus 279 ~~~~~~~~kd---~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~-~~~~~~~~~-~~~~ 341 (351)
+.-...| -++.++.+-+.|+|+|++.. .++.+.+.++. ..+.. +...+|... |+.+
T Consensus 236 ---~~g~v~dSGEGrWTv~~aldlgvpaPVia~--al~~Rf~S~~~--d~f~~kvlaalR~~FGgH~v 296 (300)
T COG1023 236 ---ISGRVSDSGEGRWTVEEALDLGVPAPVIAL--ALMMRFRSRQD--DTFAGKVLAALRNEFGGHAV 296 (300)
T ss_pred ---hcCeeccCCCceeehHHHHhcCCCchHHHH--HHHHHHhccch--hhHHHHHHHHHHHHhCCccc
Confidence 0001111 24778889999999999754 45666665544 23433 555666555 4444
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=242.25 Aligned_cols=253 Identities=20% Similarity=0.166 Sum_probs=207.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-------------------cC-CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------------------IG-AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.||..+|..|+++||+|++||+++++++.++. .| +...+++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 58999999999999999999999999999999988876653 13 45667788888999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--CCc-EEeccCCCCchhh
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--NCS-AIDAPVSGGDRGA 177 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~-~v~~pv~~~~~~~ 177 (351)
|+|+|.+. .+.+++. ++.+.+.++++||++|+..|++.+++...+.++ |.. +.+.|+.+++...
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~----~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~ 156 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAE----TIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHH----HHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence 99997664 3777777 788888899999999999999988886544332 322 3334444444444
Q ss_pred ccCce--------eEEecCCHHHHHHHHHHHHhhC-c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018694 178 KTGTL--------AIFAGGDESVVQKLNPLFALMG-K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNV 247 (351)
Q Consensus 178 ~~g~~--------~~~~~g~~~~~~~v~~ll~~~g-~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 247 (351)
..|.. .+++|++++..++++++++.++ . ++++++.+.+...|++.|++....+.+++|+..+|++.|++.
T Consensus 157 ~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~ 236 (411)
T TIGR03026 157 REGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDV 236 (411)
T ss_pred CCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 44443 6777889999999999999997 4 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 248 ELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 248 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+++.+.+... +++..+.+.||+ ...++.||+.++++.++++|+++|+++++.+.-+...
T Consensus 237 ~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~ 297 (411)
T TIGR03026 237 YEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQP 297 (411)
T ss_pred HHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhH
Confidence 9999988654 234455667765 5677999999999999999999999999887766554
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=214.19 Aligned_cols=159 Identities=47% Similarity=0.768 Sum_probs=142.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
||||||||+|.||..|+++|.++|++|++|||++++.+.+.+.|+..++++.|+++++|+||+|+|++.++++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~---- 76 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLF---- 76 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHH----
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhh----
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 129 G--ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 129 ~--i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
+ +.+.+.+++++||+++..|...+++.+.+..+|+.|+|+|++|++..+..+.+++++||+++.+++++++|+.++.
T Consensus 77 ~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 77 GENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp CTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEE
T ss_pred hhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCC
Confidence 6 8888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eE-EcCC
Q 018694 206 VN-YMGG 211 (351)
Q Consensus 206 ~~-~~g~ 211 (351)
++ ++|+
T Consensus 157 v~~~~G~ 163 (163)
T PF03446_consen 157 VYHYVGP 163 (163)
T ss_dssp EEEE-ES
T ss_pred ceeeeCc
Confidence 66 4463
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=226.28 Aligned_cols=271 Identities=18% Similarity=0.197 Sum_probs=215.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------C------CcccCCHHHhhcCCCEEEEec
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------G------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------g------~~~~~~~~~~~~~~DiIi~~v 113 (351)
.+|||+|||+|.||.+++..|+++|++|++|+|++++.+.+... | +...+++++++.++|+||+|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 35899999999999999999999999999999998887777653 3 345667888888999999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhH--HHHHHHHHhc---CCCcEEeccCCCCchhhccCceeEEec
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSL--ASELSAAASS---KNCSAIDAPVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~--~~~l~~~~~~---~~~~~v~~pv~~~~~~~~~g~~~~~~~ 187 (351)
++.++++++. .+ .++.++|+++++ .+.. .+.+.+.+.+ .++.++.+|..........+...++.+
T Consensus 83 -~~~~~~~v~~----~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 83 -PSKALRETLA----GL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred -chHHHHHHHH----hc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 6667887776 44 467799999996 3332 4566666654 567778888887776666667778889
Q ss_pred CCHHHHHHHHHHHHhhCc-eE--------EcCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 188 GDESVVQKLNPLFALMGK-VN--------YMGG---------SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~-~~--------~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
++++..+.++++|+..+. ++ +.+. .|.+...|+.+|.....+..++.|+..++++.|+++++
T Consensus 154 ~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~ 233 (328)
T PRK14618 154 PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEAT 233 (328)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999887 44 2333 48888899999999999999999999999999999999
Q ss_pred HHHHHhcC----CCCchhhhhh--hhhcccC---C-CCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 018694 250 FLNAISTG----AAGSKSLDLH--GSRILKR---D-FEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 250 ~~~~~~~~----~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~ 319 (351)
++++...+ ...++....+ ...+.++ + +.++|.+....||++.+.++++++++++|+++.+++++
T Consensus 234 ~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~------ 307 (328)
T PRK14618 234 FYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA------ 307 (328)
T ss_pred hhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH------
Confidence 99987653 2345555555 3366666 3 56778888889999999999999999999999999888
Q ss_pred CCCCCChHHHHHHHH
Q 018694 320 GEGNLGTQALILALE 334 (351)
Q Consensus 320 g~~~~d~~~~~~~~~ 334 (351)
+++.+..++++.+-
T Consensus 308 -~~~~~~~~~~~~~~ 321 (328)
T PRK14618 308 -RGGWDPLAGLRSLM 321 (328)
T ss_pred -hCCCCHHHHHHHHh
Confidence 34456666665554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=217.35 Aligned_cols=272 Identities=18% Similarity=0.170 Sum_probs=201.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||||+|||+|.||..++..|+++|++|++|+|++++.+.++.. ++....++++.+.++|+||+|+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v- 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV- 79 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC-
Confidence 6899999999999999999999999999999999888877765 2445667778888999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhc-----CCCcEEeccCCCCchhhccCceeEEecC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASS-----KNCSAIDAPVSGGDRGAKTGTLAIFAGG 188 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~-----~~~~~v~~pv~~~~~~~~~g~~~~~~~g 188 (351)
++.++++++. ++.+.+.+++++|+++++.. ...+.+.+.+.+ ....++.+|..+...........++.++
T Consensus 80 ~~~~~~~v~~----~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~ 155 (325)
T PRK00094 80 PSQALREVLK----QLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIAST 155 (325)
T ss_pred CHHHHHHHHH----HHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeC
Confidence 6788999998 88888888999999986533 223233333322 1345666777765544444455666777
Q ss_pred CHHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 189 DESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 189 ~~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
+.+..+++.++|+..+. +.+..+. |.+...|+++|.....+..++.|++.++++.|++++++
T Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~ 235 (325)
T PRK00094 156 DEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETF 235 (325)
T ss_pred CHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 88999999999998887 5554442 56666788889998889999999999999999999999
Q ss_pred HHHHhcCC----CCchhhhhhh--hhcccCC-C-----CCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 251 LNAISTGA----AGSKSLDLHG--SRILKRD-F-----EPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 251 ~~~~~~~~----~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
.+....+. ..++....+. ..+..+. + ..+ .+.+..||++.+.++++++|+++|+.+++++++
T Consensus 236 ~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~----- 309 (325)
T PRK00094 236 LGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL----- 309 (325)
T ss_pred hcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----
Confidence 87654331 1121121121 1222211 1 112 455678999999999999999999999999987
Q ss_pred cCCCCCChHHHHHHH
Q 018694 319 HGEGNLGTQALILAL 333 (351)
Q Consensus 319 ~g~~~~d~~~~~~~~ 333 (351)
.++.+...+++.+
T Consensus 310 --~~~~~~~~~~~~~ 322 (325)
T PRK00094 310 --YEGKDPREAVEDL 322 (325)
T ss_pred --cCCCCHHHHHHHH
Confidence 3455666666554
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=210.74 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=192.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc----------------ccCCHHHhhcCCCEEEE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH----------------LADSPHSLASQSDVVFS 111 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~----------------~~~~~~~~~~~~DiIi~ 111 (351)
.+|||+|||+|.||..+|..|++ ||+|++||+++++++.++ +|.. ..++..+.+.++|++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 35899999999999999999887 699999999999998888 3332 23344456889999999
Q ss_pred ecCCh------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc--CCCcEEe--------ccCCCCch
Q 018694 112 IVGYP------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS--KNCSAID--------APVSGGDR 175 (351)
Q Consensus 112 ~vp~~------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~--~~~~~v~--------~pv~~~~~ 175 (351)
|||.+ .++..+....+ ++.+.+.++++||+.||..|++++++.+...+ .|..+.+ .++.++..
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~-~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a 161 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASE-TVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDK 161 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHH-HHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcc
Confidence 99877 23344433222 78888899999999999999999875443322 2444333 24444444
Q ss_pred hhccCcee-EEecCCHHHHHHHHHHHHhhCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018694 176 GAKTGTLA-IFAGGDESVVQKLNPLFALMGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLN 252 (351)
Q Consensus 176 ~~~~g~~~-~~~~g~~~~~~~v~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 252 (351)
........ ++.|++++..+.++++++.+.. .+++++.+.|...|+++|++....+++++|+..+|++.|++..++.+
T Consensus 162 ~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 162 KHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred cccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 33333333 4556688888899999998863 77889999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCchhhhhhhhhcccCCCCCc-cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 253 AISTGAAGSKSLDLHGSRILKRDFEPG-FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 253 ~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
.+... +. +. .+.|| +.-.++.||..+++..+++.|+++++++++.+.-+..
T Consensus 242 a~~~~----~~-------~~--~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 242 AAGSK----WN-------FL--PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred HhcCC----CC-------cc--cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 85433 11 11 12344 5556678999999999999999999998887776554
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=199.94 Aligned_cols=267 Identities=14% Similarity=0.076 Sum_probs=207.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
+|||+|||+|.||.++|..|+++|++|++||++++..+.. .+.| +..+.++.+++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 3689999999999999999999999999999998766543 2334 256778888889
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
++|+|+.|+|...+++..+.+ .+.... ++.+++..++. +....++.+.+...+..+++.|+.+.... .++.
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~---~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lve 152 (308)
T PRK06129 82 DADYVQESAPENLELKRALFA---ELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI----PVVE 152 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHH---HHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC----ceEE
Confidence 999999999877666555441 444444 44455543333 44566788877666778888899864322 3456
Q ss_pred Eec---CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 185 FAG---GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 185 ~~~---g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
+++ ++++..+.+.++++.+|+ +++++..+.+. +++++ ...++.|++.++++.|++++++.+++..+.+.
T Consensus 153 iv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~ 225 (308)
T PRK06129 153 VVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGL 225 (308)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence 665 689999999999999999 88898766665 44553 44789999999999999999999999988877
Q ss_pred chhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 018694 261 SKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333 (351)
Q Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~ 333 (351)
++.+ ..|.+..+.+.++|....+.||...+.+++++.+.+.|++.-..+.+....+...+..++..+.++.
T Consensus 226 ~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (308)
T PRK06129 226 RWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAWR 296 (308)
T ss_pred CccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7665 5677777778788888889999999999999999999999888877777776667777888875543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=205.90 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=190.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-CCHHHh---------------hcCCCEEEEe
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-DSPHSL---------------ASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~~~~~~---------------~~~~DiIi~~ 112 (351)
+|||+|||+|.||..+|..|+++||+|++||+++++++.++....... ..+++. .+++|+||+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 589999999999999999999999999999999998887653322111 111111 2479999999
Q ss_pred cCCh---------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC--------------CcEEecc
Q 018694 113 VGYP---------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN--------------CSAIDAP 169 (351)
Q Consensus 113 vp~~---------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~--------------~~~v~~p 169 (351)
+|.+ ..+.+++. ++.+++.++++||+.|+..|++.+++...+.+.+ ..++.+|
T Consensus 83 vptp~~~~~~~dl~~v~~~~~----~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~P 158 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAK----SIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCP 158 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHH----HHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECC
Confidence 9876 57777887 8888899999999999999999999887765432 2356777
Q ss_pred --CCCCchhhccCceeEEecC-CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018694 170 --VSGGDRGAKTGTLAIFAGG-DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGL 245 (351)
Q Consensus 170 --v~~~~~~~~~g~~~~~~~g-~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi 245 (351)
+.++...........++|| +++..++++++++.++. ++++++.+.+...|+++|.+....+.+++|+..+|++.|+
T Consensus 159 E~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~Gi 238 (415)
T PRK11064 159 ERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGI 238 (415)
T ss_pred CccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555544444455566788 99999999999999987 7788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 246 NVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 246 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
+..++.+.+...... .++. -.+|+.-.++.||..++.+ +.+.++++++++.+.-+..
T Consensus 239 D~~~v~~~~~~~~ri---------~~l~--pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 239 NVWELIRLANRHPRV---------NILQ--PGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred CHHHHHHHhccCCCc---------ccCC--CCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 999999988654421 0111 1234444566788876543 4566677776666554433
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=199.72 Aligned_cols=256 Identities=19% Similarity=0.211 Sum_probs=189.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.|||+|||+|.||+++|..|.++||+|++|+|++. .+++++++++|+||+|+| ...+++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp-~~~~~~v~~---- 65 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVS-MKGVRPVAE---- 65 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECC-hHHHHHHHH----
Confidence 37999999999999999999999999999999853 467788889999999995 568999988
Q ss_pred CcccC-CCCCcEEEecCC-CChhHHHHHHHHHh----cCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHh
Q 018694 129 GALSG-LRPGGIIVDMTT-SEPSLASELSAAAS----SKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFAL 202 (351)
Q Consensus 129 ~i~~~-l~~~~~ii~~s~-~~~~~~~~l~~~~~----~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~ 202 (351)
++.++ +.+++++|++++ ..|.....+.+.+. ...+..+..|..........+...++++++.+..+.++++|+.
T Consensus 66 ~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~ 145 (308)
T PRK14619 66 QVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSS 145 (308)
T ss_pred HHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCC
Confidence 77653 678899999987 33333333333332 2222233444443333333346678888999999999999999
Q ss_pred hCc-eEEcCC-c----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhh
Q 018694 203 MGK-VNYMGG-S----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSL 264 (351)
Q Consensus 203 ~g~-~~~~g~-~----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~ 264 (351)
.+. +++.++ . |.+...|+.+|.....+..++.|++.++++.|+++++++++. +.+.+.
T Consensus 146 ~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~-- 221 (308)
T PRK14619 146 ERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLL-- 221 (308)
T ss_pred CcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhh--
Confidence 887 665555 1 223444588899999999999999999999999999888752 222211
Q ss_pred hhhhhhcccCCCCCccchhhH----------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHH
Q 018694 265 DLHGSRILKRDFEPGFFVNHF----------------VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA 328 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~ 328 (351)
.+.+.+..++|.+|+.+... .||++.+.++++++|+++|+.+++++++ .++.+..+
T Consensus 222 -~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~ 293 (308)
T PRK14619 222 -ATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEITPQQ 293 (308)
T ss_pred -eeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCCHHH
Confidence 13345566677767665555 8899999999999999999999999988 34456666
Q ss_pred HHHHHH
Q 018694 329 LILALE 334 (351)
Q Consensus 329 ~~~~~~ 334 (351)
+++.+.
T Consensus 294 ~~~~l~ 299 (308)
T PRK14619 294 ALEELM 299 (308)
T ss_pred HHHHHH
Confidence 655543
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=200.28 Aligned_cols=244 Identities=16% Similarity=0.142 Sum_probs=188.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh----------------cCCcc--cCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD----------------IGAHL--ADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~----------------~g~~~--~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|.||..+|..|+. ||+|++||+++++++.+++ .+... ..+..+++.++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 589999999999999988874 9999999999999887765 22233 3346677889999999
Q ss_pred ecCCh----------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCc
Q 018694 112 IVGYP----------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGT 181 (351)
Q Consensus 112 ~vp~~----------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~ 181 (351)
|||.+ ..+++++. ++.. +.++++||..||..|++++++.+.+.+.++.| +|.+ ...|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~----~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~-----l~~G~ 147 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIK----DVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEF-----LREGK 147 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHH----HHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--Cccc-----ccCCc
Confidence 99876 56778887 7776 68899999999999999999998876555444 3433 22344
Q ss_pred e--------eEEecCCHHHHHHHHHHHHh--hCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 182 L--------AIFAGGDESVVQKLNPLFAL--MGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 182 ~--------~~~~~g~~~~~~~v~~ll~~--~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
. .++.|++++..+++.+++.. ++. .+++++.+.|...|++.|++....+++++|+..+|++.|++..+
T Consensus 148 a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~e 227 (388)
T PRK15057 148 ALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQ 227 (388)
T ss_pred ccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 3 67778877778888888854 454 33689999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 250 FLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 250 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.+.+....... +.+++ -.+|+.-.++.||..++...+ .++++++++++.+.-+...
T Consensus 228 V~~a~~~d~ri~-------~~~l~--pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~~ 284 (388)
T PRK15057 228 IIEGVCLDPRIG-------NHYNN--PSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTRK 284 (388)
T ss_pred HHHHhcCCCCCC-------CccCC--CCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHhH
Confidence 999987654211 11111 124555667799998886655 5677888888776655443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=192.54 Aligned_cols=259 Identities=24% Similarity=0.355 Sum_probs=217.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhh---cCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLA---SQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~---~~~DiIi~~vp~~~~~~~ 121 (351)
+.||+||+|.||..+|.++.++|+.|.+|+|+.++.+.+.++ .+..+.+++|.+ +.+.-|++.|.....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 569999999999999999999999999999999999888765 355667888775 468888988855677899
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
++. ++.+++.+++++||-.|+....+.+..+.+.++|+.|+...++|++.++..|+ .+|.||++++.+.++++|+
T Consensus 84 ~I~----~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~ 158 (473)
T COG0362 84 VIE----QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILT 158 (473)
T ss_pred HHH----HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHH
Confidence 999 99999999999999999988888888888889999999999999999999998 8999999999999999999
Q ss_pred hhCc-------eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhhhh
Q 018694 202 LMGK-------VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHGSR 270 (351)
Q Consensus 202 ~~g~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~ 270 (351)
.+.. +.|+|+.|+++++||++|.+..+=+++++|++.+.+. .|++.+++.++.. .+...|...+.+..-
T Consensus 159 ~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~I 238 (473)
T COG0362 159 KIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADI 238 (473)
T ss_pred HHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 8752 7899999999999999999999999999999998776 8999988877755 444667777777765
Q ss_pred cccCCCCCc-cchhhHHHHH------HHHHHHHHhcCCCCcHH-HHHHHHH
Q 018694 271 ILKRDFEPG-FFVNHFVKDL------GICLKECQNMGLALPGL-ALAQQLY 313 (351)
Q Consensus 271 ~~~~~~~~~-~~~~~~~kd~------~~~~~~a~~~gv~~p~~-~~~~~l~ 313 (351)
+...|-..+ .-++.+.... +|....|-+.|+|++.+ +++...+
T Consensus 239 L~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~ 289 (473)
T COG0362 239 LRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARY 289 (473)
T ss_pred HhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555444 3455555333 38888899999999854 4444333
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=199.90 Aligned_cols=271 Identities=21% Similarity=0.244 Sum_probs=188.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----------------cCCHHHhhcCCCEEE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----------------ADSPHSLASQSDVVF 110 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~DiIi 110 (351)
|||||+|||+|.||..+|..|.++|++|++|+|++. .+.+++.|+.. .++. +.+.++|+||
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 478999999999999999999999999999999753 45555555332 2333 4567899999
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec--c---CCCCc---hhhccCce
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA--P---VSGGD---RGAKTGTL 182 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~--p---v~~~~---~~~~~g~~ 182 (351)
+|+ +..++.+++. .+.+.+.++++|++++++ ....+.+.+.++.. .++.+ + +..++ .....+.+
T Consensus 79 l~v-k~~~~~~~~~----~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l 150 (341)
T PRK08229 79 VTV-KSAATADAAA----ALAGHARPGAVVVSFQNG-VRNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGAL 150 (341)
T ss_pred EEe-cCcchHHHHH----HHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCce
Confidence 999 7777888888 888888889999999887 45556677766532 33333 1 12111 11113343
Q ss_pred eEEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q 018694 183 AIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT--------------------MVGLVEGMVYAH 241 (351)
Q Consensus 183 ~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~--------------------~~~~~Ea~~la~ 241 (351)
.+ + +.+..+.+.++|+..+. +.+.++++...|.|++.|.+.... ..++.|++.+++
T Consensus 151 ~~--~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~ 227 (341)
T PRK08229 151 AI--E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred Ee--c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 33 2 23456889999998887 888999999999999999743333 377999999999
Q ss_pred HcCCCHHHHHHHHhcC-----CCCchhhhhhhhhcccCCCCCccchhhHHHHHH------------HHHHHHHhcCCCCc
Q 018694 242 KAGLNVELFLNAISTG-----AAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLG------------ICLKECQNMGLALP 304 (351)
Q Consensus 242 ~~Gi~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~gv~~p 304 (351)
+.|++++.+.++.... ...++.+....+.+.+.++.. ...+.+|+. ++++.|+++|+++|
T Consensus 228 a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P 304 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAP 304 (341)
T ss_pred HcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCc
Confidence 9999876543322211 122333333334444433321 234577776 79999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC-CChHHHHHHHH
Q 018694 305 GLALAQQLYLSLKAHGEGN-LGTQALILALE 334 (351)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~-~d~~~~~~~~~ 334 (351)
..+.++++++...+.|... ....++..-++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (341)
T PRK08229 305 VNARLCALVHEAERAGARPAWSGEALLAELR 335 (341)
T ss_pred HHHHHHHHHHHHHhCCCcCCCChHHHHHHhh
Confidence 9999999999998887543 33333444333
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=187.94 Aligned_cols=245 Identities=18% Similarity=0.238 Sum_probs=182.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEE-eCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVF-NRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||+|||+|+||.+|+..|.++|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+ +++++++++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHHH
Confidence 789999999999999999999998 89999 99999988888889888889999899999999999 7899999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe-ccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhh
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID-APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM 203 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~-~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~ 203 (351)
++.+.+.++++||++.++.+ ...+.+.+.. . .+++ .|+.+...+.....++...+.+++.++.++++|+.+
T Consensus 80 ----~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~ 151 (266)
T PLN02688 80 ----ELRPLLSKDKLLVSVAAGIT--LADLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAV 151 (266)
T ss_pred ----HHHhhcCCCCEEEEecCCCc--HHHHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 88777888999998877643 3355554432 2 6775 477766655422222222233788999999999999
Q ss_pred CceEEcCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhh----hhh
Q 018694 204 GKVNYMGG---------SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLH----GSR 270 (351)
Q Consensus 204 g~~~~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~----~~~ 270 (351)
|.++++++ .|++.+ +...++..+.| .+++.|++++++.+++..+..++..+... ...
T Consensus 152 G~~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~e---a~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~ 221 (266)
T PLN02688 152 GKIWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALAD---GGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQ 221 (266)
T ss_pred CCEEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99666643 344444 22333444444 48899999999999998887666553211 122
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 271 ILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 271 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
+.+.-..||.+.. ..++..++.|++..+.+++.+.++++.+.+
T Consensus 222 l~~~v~spgG~t~-------~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 222 LKDMVTSPGGTTI-------AGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHhCCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 2344445665553 366888899999999999999999998764
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=188.23 Aligned_cols=271 Identities=18% Similarity=0.200 Sum_probs=208.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||||+|||+|+||+++|..|+++||+|.+|.|+++..+++.+. ++..++|+.++++++|+|++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av- 79 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV- 79 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC-
Confidence 4899999999999999999999999999999999888777664 2566889999999999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh-----HHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS-----LASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGD 189 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~-----~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~ 189 (351)
+.+.+++++. ++.+.+.++..++++++|... .++.+.+.++...+.++.+|++..+......+.+.+.+.|
T Consensus 80 Ps~~~r~v~~----~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d 155 (329)
T COG0240 80 PSQALREVLR----QLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASND 155 (329)
T ss_pred ChHHHHHHHH----HHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCC
Confidence 8999999999 888888999999999996432 2344445555445788999999999888887877778889
Q ss_pred HHHHHHHHHHHHhhCceEEc-CCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 190 ESVVQKLNPLFALMGKVNYM-GGS-----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 190 ~~~~~~v~~ll~~~g~~~~~-g~~-----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
.+..+.++.+|+.-.+.+|+ .|. |....+.+..|.-.+....+++|+..++.+.|-.++++.
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~ 235 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFM 235 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhc
Confidence 99999999999985553333 332 777778888999999999999999999999999988777
Q ss_pred HHHhcCCCCchhhhhhhhhcccCCCC----Ccc----------chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 252 NAISTGAAGSKSLDLHGSRILKRDFE----PGF----------FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 252 ~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~----------~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
.+-..++. ...+++++..|+.|. .|. .+-+..+....+.++++++++++|+++.+|+++..
T Consensus 236 gLsGlGDL---ilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~-- 310 (329)
T COG0240 236 GLSGLGDL---ILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYE-- 310 (329)
T ss_pred ccccccce---eEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC--
Confidence 66554432 333333322222211 121 12233555578999999999999999999999853
Q ss_pred HcCCCCCChHHHHHHHH
Q 018694 318 AHGEGNLGTQALILALE 334 (351)
Q Consensus 318 ~~g~~~~d~~~~~~~~~ 334 (351)
..+...+++.+.
T Consensus 311 -----~~~~~~~~~~L~ 322 (329)
T COG0240 311 -----GLDPKEAIEELM 322 (329)
T ss_pred -----CCCHHHHHHHHh
Confidence 345555555443
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=179.16 Aligned_cols=251 Identities=22% Similarity=0.262 Sum_probs=192.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
||||+|||+|+||.+|+..|.++| .+|++.+|++++.+.+.++ |+..+++..+++.++|+||+|| ||+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH
Confidence 589999999999999999999999 5899999999988755544 6666777888999999999999 999999999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLF 200 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll 200 (351)
. ++.+ ..++++||++..+.+ .+.+...+. +..++++ |+.....+. |...+..+. +++..+.+..+|
T Consensus 80 ~----~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt~a~vg~--g~t~i~~~~~~~~~~~~~v~~l~ 148 (266)
T COG0345 80 S----KLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNTPALVGA--GVTAISANANVSEEDKAFVEALL 148 (266)
T ss_pred H----Hhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCChHHHHcC--cceeeecCccCCHHHHHHHHHHH
Confidence 9 8887 788999999998865 457777776 6788887 888776664 544444433 778888999999
Q ss_pred HhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCch-hhhhhhh---hcccCC
Q 018694 201 ALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSK-SLDLHGS---RILKRD 275 (351)
Q Consensus 201 ~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~~---~~~~~~ 275 (351)
+.+|.++++.+.-...+..+.... -.++..+.|++. .+.+.|++++++.+++.....|+. ++..... .+.++-
T Consensus 149 ~~~G~v~~v~E~~~da~TaisGSg--PAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~V 226 (266)
T COG0345 149 SAVGKVVEVEESLMDAVTALSGSG--PAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQV 226 (266)
T ss_pred HhcCCeEEechHHhhHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 999998888753222221111111 127788889988 799999999999999888875433 3333322 334455
Q ss_pred CCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 276 FEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 276 ~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
.+||.+... .++..++.|+..-+.+++.+..+++.+.|
T Consensus 227 tSPGGtTia-------gl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 227 TSPGGTTIA-------GLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred cCCCchHHH-------HHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 667776643 45667789999999999999998888765
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=183.96 Aligned_cols=242 Identities=20% Similarity=0.277 Sum_probs=181.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCcc-cchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTLS-KAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~~-~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|||+|||+|+||.+|+..|.++| ++|++++|+++ +.+.+... |+....++.++++++|+||+|| +++++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav-~p~~~~~vl 82 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAM-KPKDVAEAL 82 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEe-CHHHHHHHH
Confidence 69999999999999999999988 78999999764 56666554 7877888888889999999999 888899999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC---CHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPL 199 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~l 199 (351)
. ++.+.+.++++||++.++.. .+.+.+.+. .+..++.+ |+...... +.+.+++++ +++.++.++++
T Consensus 83 ~----~l~~~~~~~~liIs~~aGi~--~~~l~~~~~-~~~~v~r~mPn~~~~~~---~~~t~~~~~~~~~~~~~~~v~~l 152 (279)
T PRK07679 83 I----PFKEYIHNNQLIISLLAGVS--THSIRNLLQ-KDVPIIRAMPNTSAAIL---KSATAISPSKHATAEHIQTAKAL 152 (279)
T ss_pred H----HHHhhcCCCCEEEEECCCCC--HHHHHHHcC-CCCeEEEECCCHHHHHh---cccEEEeeCCCCCHHHHHHHHHH
Confidence 8 88877888899999855533 234444443 34456655 55433222 334566565 46788999999
Q ss_pred HHhhCceEEcC---------CccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCc-hhhh--h
Q 018694 200 FALMGKVNYMG---------GSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGS-KSLD--L 266 (351)
Q Consensus 200 l~~~g~~~~~g---------~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s-~~~~--~ 266 (351)
|+.+|.++++. ..|++.. +...+.|++. .+++.|++.+++.+++.....++ .++. .
T Consensus 153 ~~~~G~~~~v~e~~~~~~~a~~Gsgpa-----------~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~ 221 (279)
T PRK07679 153 FETIGLVSVVEEEDMHAVTALSGSGPA-----------YIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASE 221 (279)
T ss_pred HHhCCcEEEeCHHHhhhHHHhhcCHHH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999955543 3344444 5666777777 89999999999999998876554 4443 3
Q ss_pred hhhhcccCCC-CCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 267 HGSRILKRDF-EPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
..+..+.+++ .||+++.. .++..++.|+..-+.+++.+..+++.+.+
T Consensus 222 ~~~~~l~~~v~spgg~t~~-------gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 222 KHPSILRKEITSPGGTTEA-------GIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred CCHHHHHHhcCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 4556666667 78887654 55778889999999999999999888765
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=179.43 Aligned_cols=250 Identities=15% Similarity=0.199 Sum_probs=186.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHh-cCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||+|||+|+||.+|+..|.++|+ +|++++|++++++.+.+ .|+..+.+..+++.++|+||+|+ +|+++++++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLav-kP~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSI-KPDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEe-ChHHHHHHHH
Confidence 689999999999999999999885 69999999998888765 57777778888889999999999 7899999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFA 201 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 201 (351)
++.+.+.++++||++..+.+ .+.+.+.+. ....+++. |+.+...+ .|...+..+. +++..+.++.+|+
T Consensus 82 ----~l~~~~~~~~lvISi~AGi~--i~~l~~~l~-~~~~vvR~MPN~~~~vg--~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 82 ----QIKDQIKNDVIVVTIAAGKS--IKSTENEFD-RKLKVIRVMPNTPVLVG--EGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred ----HHHHhhcCCcEEEEeCCCCc--HHHHHHhcC-CCCcEEEECCChHHHHc--CceEEEEeCCCCCHHHHHHHHHHHH
Confidence 88887888899999999865 457777664 23457766 88766554 3544444433 6677889999999
Q ss_pred hhCceEEcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhh-hh---hhhhcccC
Q 018694 202 LMGKVNYMGGS--GKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSL-DL---HGSRILKR 274 (351)
Q Consensus 202 ~~g~~~~~g~~--g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~-~~---~~~~~~~~ 274 (351)
.+|.++++.+. ....+ + ....-.++..+.|++. .+.+.|++.++..+++.+...|+..+ .. +...+.+.
T Consensus 153 ~~G~~~~~~E~~~d~~ta--l--sgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~ 228 (272)
T PRK12491 153 IFGQTEVVNEKLMDVVTS--I--SGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDM 228 (272)
T ss_pred cCCCEEEEcHHHhhhHHH--h--ccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 99997776542 11111 1 1111126677777777 89999999999999988877554332 11 12234455
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 275 DFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 275 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
-.+||.+... .++..++.|+..-+.+++.+..+++.+.+
T Consensus 229 V~sPGGtT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 229 VCSPGGTTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred CCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 5667776643 56788889999999999999988887653
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=173.34 Aligned_cols=255 Identities=21% Similarity=0.174 Sum_probs=200.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------C-CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------G-AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.+|...+..|++.||+|+.+|.++++++.++.. | +.++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 799999999999999999999999999999999998776542 2 66788999999999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC----CcEEeccCCCCch-
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN----CSAIDAPVSGGDR- 175 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~----~~~v~~pv~~~~~- 175 (351)
|+|||.|+ .++++++ .+.+.+...++||.-||..+++.+.+.+.+.... ..++..|-+-.+-
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~----~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~ 156 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAK----DIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGS 156 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHH----HHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcc
Confidence 99998664 3677777 8888888889999999999999999988776432 3466666553221
Q ss_pred --hhccCceeEEecC-CHHHHHHHHHHHHhh---CceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 176 --GAKTGTLAIFAGG-DESVVQKLNPLFALM---GKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 176 --~~~~g~~~~~~~g-~~~~~~~v~~ll~~~---g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.....+--+++|. ++.+.+.+++++..+ ...+...+...+.+.|++.|.+.+.-+.+++|...+|++.|++..+
T Consensus 157 Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~ 236 (414)
T COG1004 157 AVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQ 236 (414)
T ss_pred hhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 1111111244555 445677888888765 2366777889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 250 FLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 250 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.+.+..... -+.++++-. .||.-.+++||...++..++++|.+..+++++.+.-++-.
T Consensus 237 V~~gIGlD~R-------IG~~fl~aG--~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 237 VAEGIGLDPR-------IGNHFLNAG--FGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred HHHHcCCCch-------hhHhhCCCC--CCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9988765542 123344322 4556677899999999999999999999999887665544
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=179.05 Aligned_cols=271 Identities=17% Similarity=0.139 Sum_probs=194.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC---------------CcccCCHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG---------------AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g---------------~~~~~~~~~~~~~~DiIi~~ 112 (351)
.||||+|||+|+||+++|..|+++| +|++|.|+++..+.+++.+ +...++.++.+.++|+||+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 4689999999999999999999998 6888999988877776542 23455777778899999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-----HHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEec
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-----ASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-----~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~ 187 (351)
+ |++.++++++ ++.+.+.+++++|++++|.... ++.+.+.++...+.++..|.+.............+.+
T Consensus 85 v-ps~~~~~vl~----~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~ 159 (341)
T PRK12439 85 V-PSHGFRGVLT----ELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAM 159 (341)
T ss_pred e-CHHHHHHHHH----HHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEe
Confidence 9 8999999999 8998888888999999985531 3455555543334466778777665544433445556
Q ss_pred CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCCCHHH
Q 018694 188 GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIA-----------------TTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~-----------------~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.+++..+.++++|+.-+. ++...|.-...|-|.+.|.+.. .+..++.|+..++++.|.++++
T Consensus 160 ~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t 239 (341)
T PRK12439 160 PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPET 239 (341)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 677888899999988777 5555667666666766666655 3678899999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhhcccCCC----CCccchhh----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018694 250 FLNAISTGAAGSKSLDLHGSRILKRDF----EPGFFVNH----------FVKDLGICLKECQNMGLALPGLALAQQLYLS 315 (351)
Q Consensus 250 ~~~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~ 315 (351)
++.+...++. ...++++...|+.+ ..|.+++. .......+.++++++++++|+++++|+++.
T Consensus 240 ~~gl~G~GDl---~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~- 315 (341)
T PRK12439 240 FAGLAGMGDL---IVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN- 315 (341)
T ss_pred ccccchhhhh---hhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-
Confidence 8876555543 22222221111111 12222222 234446889999999999999999999983
Q ss_pred HHHcCCCCCChHHHHHHHH
Q 018694 316 LKAHGEGNLGTQALILALE 334 (351)
Q Consensus 316 ~~~~g~~~~d~~~~~~~~~ 334 (351)
++.+..++++.+-
T Consensus 316 ------~~~~~~~~~~~l~ 328 (341)
T PRK12439 316 ------HGSTVEQAYRGLI 328 (341)
T ss_pred ------CCCCHHHHHHHHh
Confidence 4456666655544
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=170.15 Aligned_cols=259 Identities=21% Similarity=0.318 Sum_probs=210.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc---C--CcccCCHHHhh---cCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI---G--AHLADSPHSLA---SQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~---g--~~~~~~~~~~~---~~~DiIi~~vp~~~~~~~ 121 (351)
+.||+||++.||..++.++++.|+.|.+|+|+..+++.+.++ | +....++++.+ +.+..|++-+.....++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 679999999999999999999999999999999999887665 3 34456888876 468889988867888999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
.++ ++.+++.++.+|||-.|+....+.+..+.+..+|+.|+.+.++|++.+++.|+ .++.||++++...++.+|+
T Consensus 87 ~I~----~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 87 FIE----ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred HHH----HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHH
Confidence 999 99999999999999999888888888888888999999999999999999998 8889999999999999998
Q ss_pred hhC------c--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhcCC---CCchhhhhhhh
Q 018694 202 LMG------K--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAISTGA---AGSKSLDLHGS 269 (351)
Q Consensus 202 ~~g------~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~~~~---~~s~~~~~~~~ 269 (351)
.+. . +.|+|+-|++.++||++|.+..+=++++.|++.+.++ .|++-+++.++..... .-|+..+.+.+
T Consensus 162 ~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~d 241 (487)
T KOG2653|consen 162 KIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITAD 241 (487)
T ss_pred HHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 763 2 7899999999999999999999999999999999888 8999998888876554 44666665554
Q ss_pred hcccCCCCCcc-chhhHHHHH------HHHHHHHHhcCCCCcHH-HHHHHHHH
Q 018694 270 RILKRDFEPGF-FVNHFVKDL------GICLKECQNMGLALPGL-ALAQQLYL 314 (351)
Q Consensus 270 ~~~~~~~~~~~-~~~~~~kd~------~~~~~~a~~~gv~~p~~-~~~~~l~~ 314 (351)
-+.-.+- .|. -++.+..-. .+....+-++|+|.|++ +++.....
T Consensus 242 Ilk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRcl 293 (487)
T KOG2653|consen 242 ILKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCL 293 (487)
T ss_pred Hhheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3222222 222 344433222 37788888999998854 44444333
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=175.87 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=190.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhcC-------------------CcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDIG-------------------AHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g-------------------~~~~~~~~~~~~~~D 107 (351)
||||+|||+|.+|..+|..|++.| ++|++||+++++++.++..+ +..+++.++.+.++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 689999999999999999999884 78999999999887754431 345566777889999
Q ss_pred EEEEecCChh--------------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--C--CcEEecc
Q 018694 108 VVFSIVGYPS--------------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--N--CSAIDAP 169 (351)
Q Consensus 108 iIi~~vp~~~--------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~--~~~v~~p 169 (351)
++|+|||.|. .+++++. .+.+.+.++++||.-|+..+++.+++.+.+.+. + ..+..+|
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~----~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~P 156 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAAR----MIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNP 156 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHH----HHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECC
Confidence 9999997543 5677887 888889999999999999999999988877642 3 3455667
Q ss_pred CCCCc---hhhccCceeEEecC-C----HHHHHHHHHHHHhhCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 170 VSGGD---RGAKTGTLAIFAGG-D----ESVVQKLNPLFALMGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVY 239 (351)
Q Consensus 170 v~~~~---~~~~~g~~~~~~~g-~----~~~~~~v~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l 239 (351)
-+-.+ .......--+++|+ + ++..+.++++++.+-. .+.+.+...|...|++.|.+....+++++|...+
T Consensus 157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~l 236 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (473)
T ss_pred CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55322 22112222344465 3 3457788888887753 6667889999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCC--CcHHHHHHH
Q 018694 240 AHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLA--LPGLALAQQ 311 (351)
Q Consensus 240 a~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~ 311 (351)
|++.|++..++.+.+....... ..+++ -.+|+.-.++.||..++...+++.|++ +++.+++.+
T Consensus 237 ce~~giD~~eV~~~~~~d~rig-------~~~l~--PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~ 301 (473)
T PLN02353 237 CEATGADVSQVSHAVGKDSRIG-------PKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (473)
T ss_pred HHHhCCCHHHHHHHhCCCCcCC-------CCCCC--CCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 9999999999998887654211 11221 123445567799999999999999998 667666553
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=181.89 Aligned_cols=199 Identities=17% Similarity=0.157 Sum_probs=154.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-------------------cC-CcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------------------IG-AHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~D 107 (351)
+.|||+|||+|.||.+||..|+++|++|++||+++++.+.+.+ .| +..++++++++++||
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 3479999999999999999999999999999999887655421 12 567788989999999
Q ss_pred EEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEec
Q 018694 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 108 iIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~ 187 (351)
+||.|+|+..++++.+.. ++.+.+.++.+ |..+++.+.. ..+.+.+..++..++..|+.+... +.++.+++
T Consensus 83 ~Vieavpe~~~vk~~l~~---~l~~~~~~~~i-I~SsTsgi~~-s~l~~~~~~~~r~~~~hP~nP~~~----~~Lvevv~ 153 (495)
T PRK07531 83 WIQESVPERLDLKRRVLA---EIDAAARPDAL-IGSSTSGFLP-SDLQEGMTHPERLFVAHPYNPVYL----LPLVELVG 153 (495)
T ss_pred EEEEcCcCCHHHHHHHHH---HHHhhCCCCcE-EEEcCCCCCH-HHHHhhcCCcceEEEEecCCCccc----CceEEEcC
Confidence 999999888877775542 56555666655 4455544443 366777766777888888775532 45677787
Q ss_pred CC---HHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhcCCCCch
Q 018694 188 GD---ESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVG-LVEGMVYAHKAGLNVELFLNAISTGAAGSK 262 (351)
Q Consensus 188 g~---~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~-~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~ 262 (351)
|+ ++..+.+.++++.+|+ +++++ |.+.|.+.+-+... +.|++.++++.|++++++.+++..+.+.++
T Consensus 154 g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 154 GGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 74 7999999999999999 77776 35566666666666 599999999999999999999998876554
Q ss_pred h
Q 018694 263 S 263 (351)
Q Consensus 263 ~ 263 (351)
.
T Consensus 226 ~ 226 (495)
T PRK07531 226 A 226 (495)
T ss_pred c
Confidence 4
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=169.42 Aligned_cols=252 Identities=20% Similarity=0.236 Sum_probs=178.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC---CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG---YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g---~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|||||+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+. |+....+.++.+.++|+||+|+ +++++++++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v-~~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAV-KPQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEc-CHHHHHHHH
Confidence 4789999999999999999999998 7899999999888888775 7777788888889999999999 888899999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLF 200 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll 200 (351)
. ++.+.+ +++||+++++.+ .+.+.+.++ .+..+++. |..+.. ...+...++.+. +++..+.++.+|
T Consensus 80 ~----~l~~~~--~~~vvs~~~gi~--~~~l~~~~~-~~~~iv~~~P~~p~~--~~~~~~~i~~~~~~~~~~~~~v~~l~ 148 (267)
T PRK11880 80 S----ELKGQL--DKLVVSIAAGVT--LARLERLLG-ADLPVVRAMPNTPAL--VGAGMTALTANALVSAEDRELVENLL 148 (267)
T ss_pred H----HHHhhc--CCEEEEecCCCC--HHHHHHhcC-CCCcEEEecCCchHH--HcCceEEEecCCCCCHHHHHHHHHHH
Confidence 8 777765 578999998865 345665553 35566665 544332 223333344443 788899999999
Q ss_pred HhhCceEEcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchh-hhh---hhhhcccC
Q 018694 201 ALMGKVNYMGGSG-KGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKS-LDL---HGSRILKR 274 (351)
Q Consensus 201 ~~~g~~~~~g~~g-~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~-~~~---~~~~~~~~ 274 (351)
+.+|..+++.+.. .-...-+..+.. .+...+.|++. .+.+.|+++++..+++.....++.. +.. ......+.
T Consensus 149 ~~lG~~~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 226 (267)
T PRK11880 149 SAFGKVVWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDN 226 (267)
T ss_pred HhCCeEEEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 9999966666321 111111222211 23445566666 7888999999999888776543222 211 11112223
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 275 DFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 275 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
-..||.+.. ..++..++.|++..+.+++.+.++++++.+
T Consensus 227 v~tpgG~t~-------~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 227 VTSPGGTTI-------AALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred CCCCcHHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 334555443 466888999999999999999999998764
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=173.41 Aligned_cols=257 Identities=11% Similarity=0.122 Sum_probs=173.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------CcccCCHHHhh-cCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------AHLADSPHSLA-SQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~-~~~DiIi~~vp 114 (351)
|||+|||+|+||++++..|.++|++|++|+|+++.++.+++.+ +...++.++.+ .++|+||+||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav- 79 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV- 79 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe-
Confidence 6899999999999999999999999999999988777776531 12345566665 5899999999
Q ss_pred ChhHHHHHhhCCCCCccc-CCCCCcEEEecCCCChhH-----HHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecC
Q 018694 115 YPSDVRHVLLHPSSGALS-GLRPGGIIVDMTTSEPSL-----ASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGG 188 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~-~l~~~~~ii~~s~~~~~~-----~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g 188 (351)
|++++++++. ++.+ .+.+++.++.+++|.... .+.+.+.++...+.++.+|.+.............+.+.
T Consensus 80 ks~~~~~~l~----~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 80 PTQQLRTICQ----QLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred CHHHHHHHHH----HHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecC
Confidence 9999999999 8887 787888888899885321 34555555544444555666443333222222344455
Q ss_pred CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHH
Q 018694 189 DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT-----------------TMVGLVEGMVYAHKAGL--NVE 248 (351)
Q Consensus 189 ~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~-----------------~~~~~~Ea~~la~~~Gi--~~~ 248 (351)
+.+..+.+.++|+.-+. +....++-...|.|++.|.+... +..++.|+..++++.|. +++
T Consensus 156 ~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~ 235 (326)
T PRK14620 156 NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLN 235 (326)
T ss_pred CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 66555667777766665 66666788888999998887554 56788899999999987 777
Q ss_pred HHH------HHHhcCC-CCchhhhhhhh-----hcccCCCC-CccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018694 249 LFL------NAISTGA-AGSKSLDLHGS-----RILKRDFE-PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLY 313 (351)
Q Consensus 249 ~~~------~~~~~~~-~~s~~~~~~~~-----~~~~~~~~-~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~ 313 (351)
+++ +.+..-. ..+... .++. .+.+.... ....++. ..-.+.+.++++++|+++|+++.+++++
T Consensus 236 ~~~gl~g~gdl~~t~~~~~~rN~-~~G~~l~~g~~~~d~~~~~~~~veg-i~~~~~v~~~a~~~~i~~P~~~~l~~~~ 311 (326)
T PRK14620 236 TLIGPSCLGDLILTCTTLHSRNM-SFGFKIGNGFNINQILSEGKSVIEG-FSTVKPLISLAKKLNIELPICESIYNLL 311 (326)
T ss_pred hhhccchhhhhhheecCCCCCcH-HHHHHHHCCCCHHHHHHhCCCEeec-HHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 775 3331111 011000 0000 01100000 0112332 3445689999999999999999999987
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=168.51 Aligned_cols=254 Identities=18% Similarity=0.190 Sum_probs=171.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------------cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------------ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------------~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+++.|+.. .++.++...++|+||+|+ +.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav-k~ 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV-KA 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe-cc
Confidence 6899999999999999999999999999999 77777777655322 334556567899999999 88
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCC-CchhhccCceeEEecC---
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSG-GDRGAKTGTLAIFAGG--- 188 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~-~~~~~~~g~~~~~~~g--- 188 (351)
.++++++. .+.+.+.++++||.++|+ .+..+.+.+.++.. ++.+..+...+ +..... +.-.+..|.
T Consensus 79 ~~~~~~~~----~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~-~~~~~~iG~~~~ 152 (305)
T PRK12921 79 YQLDAAIP----DLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQR-ADHRLTFGEIPG 152 (305)
T ss_pred cCHHHHHH----HHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEc-CCCcEEEcCCCC
Confidence 88999998 888888888899999998 44556677766543 23334443332 222211 111233332
Q ss_pred -CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCC
Q 018694 189 -DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGL 245 (351)
Q Consensus 189 -~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi 245 (351)
..+..+.+.++|...+. +....+.-...|.|++.|...+. +..++.|+..++++.|+
T Consensus 153 ~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~ 232 (305)
T PRK12921 153 QRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGA 232 (305)
T ss_pred CcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCC
Confidence 23455667777877776 56667789999999999976543 45668899999999998
Q ss_pred CHH--HHHHHHhcCC-CCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 246 NVE--LFLNAISTGA-AGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 246 ~~~--~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.. ...+.+.... ..........+.+.++... +++.+. ++++++++++|+++|.++.++++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~t---Eid~i~---G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 233 PLRDDVVEEIVKIFAGAPGDMKTSMLRDMEKGRPL---EIDHLQ---GVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred CCChhHHHHHHHHHhccCCCCCcHHHHHHHcCCcc---cHHHHH---HHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 753 3333322110 0000001111122222221 344333 7899999999999999999999997764
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=168.43 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=170.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--------------cCCHHHhhcCCCEEEEe
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--------------ADSPHSLASQSDVVFSI 112 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--------------~~~~~~~~~~~DiIi~~ 112 (351)
+..|||+|||+|.||+.+|..|.++|++|+++.|++ .+.+...|+.. .++. +....+|+||+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 445899999999999999999999999999999985 34455544322 1122 235678999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCC-Cchh-hccCceeEE-
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSG-GDRG-AKTGTLAIF- 185 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~-~~~~-~~~g~~~~~- 185 (351)
| |..++.+++. .+.+.+.+++.|+.+.|+ .+..+.+.+.++.. ++.++.+...+ +.+. ...+.+.+-
T Consensus 80 v-K~~~~~~~~~----~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~ 153 (313)
T PRK06249 80 L-KTTANALLAP----LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGY 153 (313)
T ss_pred e-cCCChHhHHH----HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEec
Confidence 9 8888888888 788888888999999998 55667777777543 22333332222 1111 112332221
Q ss_pred ecC-C-----HHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Q 018694 186 AGG-D-----ESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGM 237 (351)
Q Consensus 186 ~~g-~-----~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~ 237 (351)
..+ + .+..+.+.++|+..|. +....++....|.|++.|...+. +..++.|+.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~ 233 (313)
T PRK06249 154 HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI 233 (313)
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence 122 2 3555677888888887 77778899999999998876543 556688999
Q ss_pred HHHHHcCCCHH--HHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018694 238 VYAHKAGLNVE--LFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLALPGLALAQQLY 313 (351)
Q Consensus 238 ~la~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~ 313 (351)
.++++.|++.+ ...+.+....... .+.+.|.+ |+..|. +++.+. ++++++++++|+++|+++.++.++
T Consensus 234 ~va~a~Gi~~~~~~~~~~~~~~~~~~----~~~sSM~q-D~~~gr~tEid~i~---G~vv~~a~~~Gi~~P~~~~l~~~l 305 (313)
T PRK06249 234 QGAAACGHTLPEGYADHMLAVTERMP----DYRPSMYH-DFEEGRPLELEAIY---ANPLAAARAAGCAMPRVEMLYQAL 305 (313)
T ss_pred HHHHhcCCCCChhHHHHHHHHhhcCC----CCCChHHH-HHHCCCcccHHHHh---hHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999998742 2222222111000 01111111 222222 344443 899999999999999999999998
Q ss_pred HHHHH
Q 018694 314 LSLKA 318 (351)
Q Consensus 314 ~~~~~ 318 (351)
+....
T Consensus 306 ~~~e~ 310 (313)
T PRK06249 306 EFLDR 310 (313)
T ss_pred HHHHh
Confidence 87654
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=168.37 Aligned_cols=196 Identities=16% Similarity=0.185 Sum_probs=159.7
Q ss_pred CeEEEEccChh--------------------hHHHHHHHHHCCCeEEEEeCCcc-----cchhHHhcCCcccCCHHHhhc
Q 018694 50 TRIGWIGTGVM--------------------GRSMCAHLLNAGYTVTVFNRTLS-----KAQPLLDIGAHLADSPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~m--------------------G~~ia~~L~~~g~~V~~~dr~~~-----~~~~~~~~g~~~~~~~~~~~~ 104 (351)
|||.|.|+|+. |..||..|+++||+|++|||+++ +.+.+.+.|+...++..+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68999999987 88999999999999999999987 445566678888889989899
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHH-HHHHHHHhc----CCCcEE-eccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLA-SELSAAASS----KNCSAI-DAPVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~-~~l~~~~~~----~~~~~v-~~pv~~~~~~~~ 178 (351)
++|+||+|+|.+..+++++. ++.+.+.++++|+|++++.+... +.+.+.+.. .++.+. ++++.+++
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl~----~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae---- 152 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIAK----NILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP---- 152 (342)
T ss_pred CCCEEEEECCCcHHHHHHHH----HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccc----
Confidence 99999999976666999998 88888889999999999988876 566666642 233333 22333332
Q ss_pred cCceeEEecC--------CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 179 TGTLAIFAGG--------DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 179 ~g~~~~~~~g--------~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.+...++.++ +++.+++++++|+.+|. +++++ .|.+...|+++|++...+..+..|++.++++.|.++..
T Consensus 153 ~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 153 QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 2344555544 88999999999999999 65555 69999999999999999999999999999999999987
Q ss_pred HHHHH
Q 018694 250 FLNAI 254 (351)
Q Consensus 250 ~~~~~ 254 (351)
+.+.+
T Consensus 232 ~~~~~ 236 (342)
T PRK12557 232 MIEKQ 236 (342)
T ss_pred HHHHH
Confidence 76654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=167.75 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=168.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----------cCCHHHhhcCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----------ADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----------~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|||+|||+|+||+.+|..|.++|++|++++|++++.+.+.+.|+.. .++.++. .++|+||+|+ ++.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~-k~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV-KAYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec-cccc
Confidence 6899999999999999999999999999999888888777766532 3445554 7899999999 7888
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC----cEEeccCC-CCc-hhhccCceeEEecC--CH
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC----SAIDAPVS-GGD-RGAKTGTLAIFAGG--DE 190 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~----~~v~~pv~-~~~-~~~~~g~~~~~~~g--~~ 190 (351)
+++++. .+.+.+.+++.||.+.|+ .+..+.+.+.+....+ .+..+-.. ++. .....+.+. +... ..
T Consensus 79 ~~~~~~----~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~-ig~~~~~~ 152 (304)
T PRK06522 79 LPAALP----SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLK-IGEPDGES 152 (304)
T ss_pred HHHHHH----HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEE-EeCCCCCc
Confidence 999999 888888888899999998 4445566665543221 11111111 111 111123322 2221 22
Q ss_pred HHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH-
Q 018694 191 SVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGLNV- 247 (351)
Q Consensus 191 ~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi~~- 247 (351)
+..+.+.++|+..+. +.+..++....|.|++.|...+. +..++.|+..++++.|++.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 232 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS 232 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 335677778887777 55566689999999998876543 4566789999999998764
Q ss_pred -HHHHHHHhcCCCCc-hhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 248 -ELFLNAISTGAAGS-KSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 248 -~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
+.+.+.+....... .........+..+... +++.+. ++++++++++|+++|.++.++++++...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~t---Eid~i~---G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 233 VEEVREYVRQVIQKTAANTSSMLQDLEAGRPT---EIDAIV---GYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred hHHHHHHHHHHhhccCCCCchHHHHHHcCCCc---ccchhc---cHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 33333332211000 0000011111122111 233322 68999999999999999999999977654
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=167.15 Aligned_cols=268 Identities=13% Similarity=0.091 Sum_probs=195.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-------CeEEEEeCCccc-----chhHHhc--------------CCcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-------YTVTVFNRTLSK-----AQPLLDI--------------GAHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-------~~V~~~dr~~~~-----~~~~~~~--------------g~~~~~~~~~~ 102 (351)
.|||+|||+|+||+++|..|.++| ++|.+|.|+++. .+.+.+. ++..+++.+++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 379999999999999999999987 799999999762 4555433 24457788889
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCccc--CCCCCcEEEecCCCChh-------HHHHHHHHHhcCCCcEEeccCCCC
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALS--GLRPGGIIVDMTTSEPS-------LASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~--~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
++++|+||++| |++.+++++. ++.+ .+.++.++|+++.|... .++.+.+.+. ..+.++.+|.+..
T Consensus 91 v~~aDiIvlAV-Psq~l~~vl~----~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~ 164 (365)
T PTZ00345 91 VEDADLLIFVI-PHQFLESVLS----QIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVAN 164 (365)
T ss_pred HhcCCEEEEEc-ChHHHHHHHH----HhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHH
Confidence 99999999999 8899999999 8887 77777799999987431 2344444443 3566788999998
Q ss_pred chhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHHH
Q 018694 174 DRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLVE 235 (351)
Q Consensus 174 ~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~E 235 (351)
++.....+...+++.+.+..+.++++|+.-.. ++...|. |....+++..|.-.+.+..++.|
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 88887777777778899988999999986555 3333332 66666677789999999999999
Q ss_pred HHHHHHHcC--CCHHHHHHHHhcCCCCchhhhhhh-------hhcccCCCCCccchhh------------HHHHHHHHHH
Q 018694 236 GMVYAHKAG--LNVELFLNAISTGAAGSKSLDLHG-------SRILKRDFEPGFFVNH------------FVKDLGICLK 294 (351)
Q Consensus 236 a~~la~~~G--i~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~------------~~kd~~~~~~ 294 (351)
+..++++.| .++++++.+...++. ...+++ ..+.++. .+.+++. .......+.+
T Consensus 245 m~~l~~a~g~~~~~~T~~glaG~GDL---i~Tc~sSRN~~~G~~l~~g~--~~~~~~~~~~~~~~~~~vEG~~t~~~v~~ 319 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFESCGLADL---ITTCLGGRNVRCAAEFAKRN--GKKSWEEIEAELLNGQKLQGTVTLKEVYE 319 (365)
T ss_pred HHHHHHHhCCCCCccchhccchHhHh---hhcccCCCcHHHHHHHhccC--CCCCHHHHHHHhhCCcEechHHHHHHHHH
Confidence 999999996 478888876554442 111221 1111110 0012222 2334457889
Q ss_pred HHHhcCC--CCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 295 ECQNMGL--ALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 295 ~a~~~gv--~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
+++++++ ++|+++++|+++. ++.+...+++.+.
T Consensus 320 l~~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~ 354 (365)
T PTZ00345 320 VLESHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVLS 354 (365)
T ss_pred HHHHcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 9999999 8999999999984 4456666666554
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=161.69 Aligned_cols=240 Identities=18% Similarity=0.183 Sum_probs=174.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCc-ccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTL-SKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~-~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
|+||+|||+|+||.+++..|.+.| ++|.+|+|++ ++.+.+... +.....+..+++.++|+||+|+ +++.+.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilav-pp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICV-PPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEec-CHHHHHH
Confidence 589999999999999999999988 6899999864 334444433 3444567788888999999999 7888999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNP 198 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ 198 (351)
++. ++.+++.++++||+++++.. ..++.+.++ ...++++ |+.+...+. |...+..+. +++..+.++.
T Consensus 80 vl~----~l~~~l~~~~~ivS~~aGi~--~~~l~~~~~--~~~vvR~MPN~~~~~g~--g~t~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 80 LLK----DCAPVLTPDRHVVSIAAGVS--LDDLLEITP--GLQVSRLIPSLTSAVGV--GTSLVAHAETVNEANKSRLEE 149 (277)
T ss_pred HHH----HHHhhcCCCCEEEEECCCCC--HHHHHHHcC--CCCEEEEeCccHHHHhh--hcEEEecCCCCCHHHHHHHHH
Confidence 998 88888888889999999855 337777664 2467776 887665553 544444333 6778889999
Q ss_pred HHHhhCceEEcCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc-CCCHHHHHHHHhcCCCCchhhh--
Q 018694 199 LFALMGKVNYMGGS---------GKGQFAKLANQITIATTMVGLVEGMV-YAHKA-GLNVELFLNAISTGAAGSKSLD-- 265 (351)
Q Consensus 199 ll~~~g~~~~~g~~---------g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~-Gi~~~~~~~~~~~~~~~s~~~~-- 265 (351)
+|+.+|.++++.+. |++.+ +...+.|++. .+.+. |++++++.+++.....|+..+-
T Consensus 150 l~~~~G~~~~v~E~~~d~~tal~gsgPA-----------~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~ 218 (277)
T PRK06928 150 TLSHFSHVMTIREENMDIASNLTSSSPG-----------FIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVE 218 (277)
T ss_pred HHHhCCCEEEEchhhCceeeeeecCHHH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999997776542 55555 6677778777 78888 7999999999887775544332
Q ss_pred --hhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 266 --LHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 266 --~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
.....+.+...+||.+... .++..++ |++.-+.+++....++.++
T Consensus 219 ~~~~p~~l~~~v~spgGtT~~-------gl~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 219 EDYTFSGTIERVATKGGITAE-------GAEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred cCCCHHHHHHhCCCCChHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1123445555667766543 3355554 7777777777777776654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-19 Score=161.77 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=162.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------C-CcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------G-AHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~D 107 (351)
+.++|+|||+|.+|..+|..++++|++|+++|.++.+++.++.. | ++.+++++++ +.||
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~d 86 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECD 86 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCC
Confidence 34899999999999999999999999999999999887665432 2 5556666665 4899
Q ss_pred EEEEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--CCc------EEecc-
Q 018694 108 VVFSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--NCS------AIDAP- 169 (351)
Q Consensus 108 iIi~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~------~v~~p- 169 (351)
++|+|||.|- .+++..+ .+.+.+.+|.+||--|++.|++++++...+.+. |.. +.-+|
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~----sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPE 162 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAAR----SIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPE 162 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHH----HHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcc
Confidence 9999997663 3566777 888999999999999999999999998887653 222 22344
Q ss_pred -CCCCchhhccCceeEEecC-CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018694 170 -VSGGDRGAKTGTLAIFAGG-DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLN 246 (351)
Q Consensus 170 -v~~~~~~~~~g~~~~~~~g-~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 246 (351)
+.++......-...-+.|| ++...+.+..+.+.+-. ++.+.+...|.+.|+..|.+....+++.+|...+|++.|++
T Consensus 163 Rv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GId 242 (436)
T COG0677 163 RVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGID 242 (436)
T ss_pred ccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 3333322222122333445 77777888888888766 77888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 018694 247 VELFLNAISTGA 258 (351)
Q Consensus 247 ~~~~~~~~~~~~ 258 (351)
..+++++.+...
T Consensus 243 vwevIeaAnt~P 254 (436)
T COG0677 243 VWEVIEAANTKP 254 (436)
T ss_pred HHHHHHHhccCC
Confidence 999999987764
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-19 Score=163.01 Aligned_cols=253 Identities=15% Similarity=0.122 Sum_probs=168.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccC-----------CHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLAD-----------SPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~-----------~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|||+|+||+.+|..|.++|++|++++|+.++++.++++ |+...+ ...+....+|+||+|| |..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence 799999999999999999999999999999988888877754 433211 1112234689999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC----CcEEeccCCC-CchhhccCceeEEecC-CHH
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN----CSAIDAPVSG-GDRGAKTGTLAIFAGG-DES 191 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~----~~~v~~pv~~-~~~~~~~g~~~~~~~g-~~~ 191 (351)
++++++. .+.+.+.+++.|+.+.|| .+..+.+.+.++... +.++.+...+ +.+. ..+.-.+..|. +.+
T Consensus 82 ~~~~al~----~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~-~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 82 DAEPAVA----SLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASSTEGAFRDGDWRVV-FAGHGFTWLGDPRNP 155 (305)
T ss_pred hHHHHHH----HHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEE-EeceEEEEEcCCCCc
Confidence 9999999 899999999999999999 455567777765332 1222221111 1111 11111122332 334
Q ss_pred HHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCHH--HH
Q 018694 192 VVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT------------------TMVGLVEGMVYAHKAGLNVE--LF 250 (351)
Q Consensus 192 ~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~------------------~~~~~~Ea~~la~~~Gi~~~--~~ 250 (351)
..+++.++|...|. ..+..++-...|.|++.|...+. +..++.|+..++++.|++.. .+
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~ 235 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANL 235 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 45667778887776 66666789999999998886553 45667899889999997642 22
Q ss_pred HHHHh----cCCC-CchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 018694 251 LNAIS----TGAA-GSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 251 ~~~~~----~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~ 319 (351)
.+.+. .... .+.|+ ..+.++. ..+++.+. ++++++++++|+++|.++.++++++....+
T Consensus 236 ~~~~~~~~~~~~~~~sSM~----qD~~~gR---~tEid~i~---G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~ 299 (305)
T PRK05708 236 HEEVQRVIQATAANYSSMY----QDVRAGR---RTEISYLL---GYACRAADRHGLPLPRLQHLQQRLVAHLRA 299 (305)
T ss_pred HHHHHHHHHhccCCCcHHH----HHHHcCC---ceeehhhh---hHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence 22221 1110 11111 1111111 11333333 789999999999999999999988887654
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=159.16 Aligned_cols=251 Identities=21% Similarity=0.240 Sum_probs=176.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC------------CHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD------------SPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~------------~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|+|+|+||+.++..|.++|++|+++.|++. ++++++.|+...+ +..+....+|+||++| |..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 7999999999999999999999999999999865 7888887644322 2234445799999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC------C--CchhhccCceeE--Eec
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS------G--GDRGAKTGTLAI--FAG 187 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~------~--~~~~~~~g~~~~--~~~ 187 (351)
++++++. .+.+.+.+++.|+.+.|| .++.+.+.+..+.. +++.+-+. + .......|.+.+ +.+
T Consensus 79 q~~~al~----~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~--~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~ 151 (307)
T COG1893 79 QLEEALP----SLAPLLGPNTVVLFLQNG-LGHEEELRKILPKE--TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRG 151 (307)
T ss_pred cHHHHHH----HhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcc--eEEEEEeeeeeEecCCceEEEecCCcEEEccCCC
Confidence 9999999 999999999999999999 55556777776644 23322111 1 111111122222 122
Q ss_pred CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC-
Q 018694 188 GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAG- 244 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~G- 244 (351)
+.++..+.+.++|+..+. +.+..++-...|.|++.|...+. +...+.|+..++.+.|
T Consensus 152 ~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 152 GRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred CchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccC
Confidence 344677888888888777 66677799999999999998884 5567789999999999
Q ss_pred -CCHHHHHHH---HhcC--CCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 245 -LNVELFLNA---ISTG--AAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 245 -i~~~~~~~~---~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
++.+...++ .... ...+.|+ +.+..+..+ +++.+. +++++.|+++|+++|+++.++++++....
T Consensus 232 ~~~~~~~~~v~~~~~~~~~~~~sSM~----qDl~~gr~t---Eid~i~---G~vv~~a~~~gi~~P~~~~L~~lvk~~e~ 301 (307)
T COG1893 232 ELPEEVVERVLAVIRATDAENYSSML----QDLEKGRPT---EIDAIN---GAVVRLAKKHGLATPVNDTLYALLKAKEA 301 (307)
T ss_pred CCCHHHHHHHHHHHHhcccccCchHH----HHHHcCCcc---cHHHHh---hHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 444322333 3333 1112222 112222111 344444 78999999999999999999999998875
Q ss_pred c
Q 018694 319 H 319 (351)
Q Consensus 319 ~ 319 (351)
.
T Consensus 302 ~ 302 (307)
T COG1893 302 E 302 (307)
T ss_pred h
Confidence 4
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=165.17 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=183.3
Q ss_pred eEEEEccChhhHHHHHHHHHCC--------CeEEEEeC-----CcccchhHHhc--------------CCcccCCHHHhh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAG--------YTVTVFNR-----TLSKAQPLLDI--------------GAHLADSPHSLA 103 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g--------~~V~~~dr-----~~~~~~~~~~~--------------g~~~~~~~~~~~ 103 (351)
||+|||+|+||+++|..|+++| ++|.+|.| +++..+.+.+. ++..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 33333333322 134567888999
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-------HHHHHHHHhcCCCcEEeccCCCCchh
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-------ASELSAAASSKNCSAIDAPVSGGDRG 176 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-------~~~l~~~~~~~~~~~v~~pv~~~~~~ 176 (351)
+++|+||+++ +++.+++++. ++.+++.+++++|++++|.... ++.+.+.+ ...+.++.+|.+.....
T Consensus 81 ~~ADiIIlAV-Ps~~i~~vl~----~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 81 KGADILVFVI-PHQFLEGICK----QLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVA 154 (342)
T ss_pred hcCCEEEEEC-ChHHHHHHHH----HHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHH
Confidence 9999999999 8999999999 8988888889999999864322 33444444 24566788899998888
Q ss_pred hccCceeEEecCC----HHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHH
Q 018694 177 AKTGTLAIFAGGD----ESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLV 234 (351)
Q Consensus 177 ~~~g~~~~~~~g~----~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~ 234 (351)
....+...+.+.+ .+..+.++++|+.-.. ++...|. |....+++..|.-.+.+..++.
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 7777666767777 7888899999986444 3333332 5566666778998999999999
Q ss_pred HHHHHHHHcCCCHH--HHHHHHhcCCCCchhhhhhhhhcccCCCC------C-ccchhhHH------------HHHHHHH
Q 018694 235 EGMVYAHKAGLNVE--LFLNAISTGAAGSKSLDLHGSRILKRDFE------P-GFFVNHFV------------KDLGICL 293 (351)
Q Consensus 235 Ea~~la~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------~-~~~~~~~~------------kd~~~~~ 293 (351)
|+..++++.|-+++ +++.+...++.- ...++ .|++. . |.+++... .-...+.
T Consensus 235 Em~~l~~~~g~~~~~~T~~gl~G~GDL~---~Tc~s----sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~ 307 (342)
T TIGR03376 235 EMIKFARMFFPTGEVTFTFESCGVADLI---TTCLG----GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVH 307 (342)
T ss_pred HHHHHHHHhCCCCCCCcccccchhhhhh---heeec----CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHH
Confidence 99999999998776 776655444321 11111 11111 1 33333332 2345788
Q ss_pred HHHHhcCCC--CcHHHHHHHHHH
Q 018694 294 KECQNMGLA--LPGLALAQQLYL 314 (351)
Q Consensus 294 ~~a~~~gv~--~p~~~~~~~l~~ 314 (351)
+++++++++ +|+++++|+++.
T Consensus 308 ~l~~~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 308 ELLKNKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred HHHHHcCCCcCCCHHHHHHHHHh
Confidence 999999999 999999999984
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=157.11 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=166.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe---EEEEeCCcccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT---VTVFNRTLSKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~---V~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||+|||+|+||.++++.|.+.|++ |.+|+|++++.+.+.+. +...+.+..++++++|+||+|+ +++++.+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav-~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAV-RPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEe-CHHHHHHHHH
Confidence 5899999999999999999998864 57899999988887765 4667788888889999999999 6888999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG 204 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g 204 (351)
++. +.++++||++..+.. .+.+.+.+......+...|+...... .+. ..+++++ +.++++|+.+|
T Consensus 80 ----~l~--~~~~~~vis~~ag~~--~~~l~~~~~~~~~~~r~~P~~~~a~~--~g~-t~~~~~~----~~~~~l~~~lG 144 (258)
T PRK06476 80 ----ALR--FRPGQTVISVIAATD--RAALLEWIGHDVKLVRAIPLPFVAER--KGV-TAIYPPD----PFVAALFDALG 144 (258)
T ss_pred ----Hhc--cCCCCEEEEECCCCC--HHHHHHHhCCCCCEEEECCCChhhhC--CCC-eEecCCH----HHHHHHHHhcC
Confidence 652 467889999776533 55777766533334445577544322 233 4444443 57999999999
Q ss_pred ceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhh--hh--hh-hhcccCCCCCc
Q 018694 205 KVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSL--DL--HG-SRILKRDFEPG 279 (351)
Q Consensus 205 ~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~--~~--~~-~~~~~~~~~~~ 279 (351)
..+++.+...-...-.+. ...+.+..++.++..++++.|++++++.+++.....++..+ .. .. ..+.+.-.+||
T Consensus 145 ~~~~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 145 TAVECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred CcEEECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence 955555321111111111 13333445677777799999999999999988776554433 11 11 23344445676
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 280 FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 280 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
.+... .++..++.|+.-.+.+++....+++.
T Consensus 224 GtT~~-------gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 224 GLNEQ-------VLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred chHHH-------HHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 66543 55777888888777777766666554
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=157.67 Aligned_cols=238 Identities=22% Similarity=0.214 Sum_probs=157.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|||+|||+|+||.+++..|.++|+ +|.+|+|++++.+.+.+. |+....+..+++.++|+||+|+ +++++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav-~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICV-KPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEec-CHHHHHHHH
Confidence 589999999999999999999984 799999999888777664 6777778888889999999999 888899999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEec--CCHHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAG--GDESVVQKLNPLFA 201 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~--g~~~~~~~v~~ll~ 201 (351)
. ++.+++.++++||+++++.. .+.+.+.++...++++ |... .....|.+.+..+ .+++..+.++++|+
T Consensus 80 ~----~l~~~l~~~~~iis~~ag~~--~~~L~~~~~~~~~r~~--p~~~--~~~~~G~t~~~~g~~~~~~~~~~~~~ll~ 149 (273)
T PRK07680 80 Q----KLAPHLTDEHCLVSITSPIS--VEQLETLVPCQVARII--PSIT--NRALSGASLFTFGSRCSEEDQQKLERLFS 149 (273)
T ss_pred H----HHHhhcCCCCEEEEECCCCC--HHHHHHHcCCCEEEEC--CChH--HHHhhccEEEeeCCCCCHHHHHHHHHHHH
Confidence 8 88888888899999998753 5567766653333344 3322 2333566554444 26677889999999
Q ss_pred hhCceEEcCCc-c-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-cCCCHHHHHHHHhcCCCCchhhhh----hhhhccc
Q 018694 202 LMGKVNYMGGS-G-KGQFAKLANQITIATTMVGLVEGMV-YAHK-AGLNVELFLNAISTGAAGSKSLDL----HGSRILK 273 (351)
Q Consensus 202 ~~g~~~~~g~~-g-~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~-~Gi~~~~~~~~~~~~~~~s~~~~~----~~~~~~~ 273 (351)
.+|..+++.+. . ....+--+... +...+.|++. .+.+ .|++.+++.+++.....++..+.. ....+.+
T Consensus 150 ~~G~~~~i~e~~~~~~~~l~gs~pa----~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~ 225 (273)
T PRK07680 150 NISTPLVIEEDITRVSSDIVSCGPA----FFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQE 225 (273)
T ss_pred cCCCEEEEChHhcchhhhhccchHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99996666542 1 11111111112 3333333333 3344 899999999888766544333221 1233445
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 018694 274 RDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 274 ~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
...+||.+... .++..++ +++.-+.+++.
T Consensus 226 ~v~spgG~T~~-------gl~~le~-~~~~~~~~~~~ 254 (273)
T PRK07680 226 KVCVKGGITGE-------GIKVLEE-EVGDMFHRLFQ 254 (273)
T ss_pred hCCCCChhHHH-------HHHHHHH-HHHHHHHHHHH
Confidence 55667766543 3344555 44444444443
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=137.88 Aligned_cols=121 Identities=40% Similarity=0.588 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhh-cccCCCCCccchhhHHHHHHH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSR-ILKRDFEPGFFVNHFVKDLGI 291 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~ 291 (351)
|++...|+++|.+...++..+.|++.++++.|++++++.+++..+.+.++.++.+.++ +.+++|.++|+++...||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6889999999999999999999999999999999999999999999999999999885 899999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 018694 292 CLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333 (351)
Q Consensus 292 ~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~ 333 (351)
+++++++.|+|+|+.+.+.++++.+.++|+++.|++++++.|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999876
|
... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=151.29 Aligned_cols=245 Identities=17% Similarity=0.194 Sum_probs=168.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|||+|||+|+||.+++..|.+++. ++++++|++++. +.....++.+.++++|+||+|+ +++++++++.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilav-kp~~~~~vl~- 75 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAV-KPDLAGKVLL- 75 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEe-CHHHHHHHHH-
Confidence 799999999999999999998873 499999986552 2344567778888999999999 9999999999
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHh
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFAL 202 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~ 202 (351)
++.+++.+ ++||++.++.. .+.+.+.++. ...+++. |+.+...+ .+...+..+. +++..+.++.+|+.
T Consensus 76 ---~i~~~l~~-~~iIS~~aGi~--~~~l~~~~~~-~~~vvr~mPn~p~~~g--~g~t~i~~~~~~~~~~~~~v~~l~~~ 146 (260)
T PTZ00431 76 ---EIKPYLGS-KLLISICGGLN--LKTLEEMVGV-EAKIVRVMPNTPSLVG--QGSLVFCANNNVDSTDKKKVIDIFSA 146 (260)
T ss_pred ---HHHhhccC-CEEEEEeCCcc--HHHHHHHcCC-CCeEEEECCCchhHhc--ceeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 88877754 56777777644 3455555432 2223333 55544333 3443333222 56778899999999
Q ss_pred hCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhh-hhh---hhhcccCCCC
Q 018694 203 MGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSL-DLH---GSRILKRDFE 277 (351)
Q Consensus 203 ~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~-~~~---~~~~~~~~~~ 277 (351)
+|.++++.+...-.+. +.....-.+...+.|++. .+.+.|++.+++.+++.+...|+..+ ... ...+.+...+
T Consensus 147 ~G~~~~v~E~~~d~~t--a~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~s 224 (260)
T PTZ00431 147 CGIIQEIKEKDMDIAT--AISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCS 224 (260)
T ss_pred CCcEEEEChHHcchhh--hhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCC
Confidence 9997777642111111 111111125666777777 89999999999999988877544333 222 2245555667
Q ss_pred CccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 278 PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 278 ~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
||.+... .++..++.|+..-+.+++.+..+++.+.|
T Consensus 225 pgG~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 225 PGGITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred CChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 8776643 55778889999999999988888887643
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-17 Score=148.11 Aligned_cols=190 Identities=18% Similarity=0.306 Sum_probs=141.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||.+++..|.+.|+ +|++||+++++.+.+.+.|+. ...+.+++. ++|+||+|+ ++..+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilav-p~~~~~~~~~-- 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAI-PVDAIIEILP-- 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeC-cHHHHHHHHH--
Confidence 589999999999999999999996 789999999888877777753 445666765 599999999 7777888888
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC----chhh----ccCceeEEec---CCHHHHH
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG----DRGA----KTGTLAIFAG---GDESVVQ 194 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~----~~~~----~~g~~~~~~~---g~~~~~~ 194 (351)
++.+ +.++++|+++++......+.+.+. .+..|+.+ |+.|. +... ..+..+++++ .+++..+
T Consensus 77 --~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~ 150 (275)
T PRK08507 77 --KLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQE 150 (275)
T ss_pred --HHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHH
Confidence 8888 888999999887655544444333 23568888 98764 2221 2456566664 3677889
Q ss_pred HHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 195 KLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++++|+.+|. ++++++.+....+++++++.. ....++.+++ . .+.+.+.+.+..
T Consensus 151 ~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~ 206 (275)
T PRK08507 151 RAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLA 206 (275)
T ss_pred HHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhc
Confidence 99999999998 889999999999999999865 3344444443 1 355555544443
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=163.13 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=144.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
..||+|||+|.||..||..|+.+|++|++||++++.++.. .++| +...+++++ +.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 4689999999999999999999999999999999887663 4445 466777766 56
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEE-ecCCCChhHHHHHHHHHhc----CCCcEEe-ccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIV-DMTTSEPSLASELSAAASS----KNCSAID-APVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii-~~s~~~~~~~~~l~~~~~~----~~~~~v~-~pv~~~~~~~~ 178 (351)
+||+||.|+|+..++++.+.+ ++...+.+++++. ++|+..+. ++++.+.. .|.+|++ +|++
T Consensus 86 ~aDlViEav~E~~~vK~~vf~---~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~------- 152 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFA---QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM------- 152 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHH---HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC-------
Confidence 999999999999999988773 4555566777774 66666553 45555542 2777877 5666
Q ss_pred cCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 179 TGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 179 ~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
.++.+++| ++++.+.+.++++.+|+ ++++++ .|. ++|+++. .++.|++.++++.+++++++.++
T Consensus 153 --~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrll~----~~~~Ea~~l~~~g~~~~~~iD~a 221 (507)
T PRK08268 153 --KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVNRAAR----PYYTEALRVLEEGVADPATIDAI 221 (507)
T ss_pred --eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHH
Confidence 45777765 89999999999999999 888887 562 3333332 47999999999999999999999
Q ss_pred HhcCCC
Q 018694 254 ISTGAA 259 (351)
Q Consensus 254 ~~~~~~ 259 (351)
+..+.+
T Consensus 222 l~~~~G 227 (507)
T PRK08268 222 LREAAG 227 (507)
T ss_pred HHhcCC
Confidence 876543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=150.00 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=137.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc------------------------CCcccCCHHHhhcC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI------------------------GAHLADSPHSLASQ 105 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~~~~~~ 105 (351)
.||+|||+|.||..+|..|+++|++|++||++++.++.+.+. ++..++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 689999999999999999999999999999999887665421 13456778888999
Q ss_pred CCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEE-EecCCCChhHHHHHHHHHhc----CCCcEEeccCCCCchhhccC
Q 018694 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGII-VDMTTSEPSLASELSAAASS----KNCSAIDAPVSGGDRGAKTG 180 (351)
Q Consensus 106 ~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~i-i~~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~~~~~~~g 180 (351)
+|+||+|+|...+++..+.. ++.+.+.+++++ +++|+..+. .+.+.+.. .+.+|+ +|+.+.
T Consensus 82 aD~Vi~avpe~~~~k~~~~~---~l~~~~~~~~il~~~tSt~~~~---~l~~~~~~~~r~~g~h~~-~Pv~~~------- 147 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFE---TADAHAPAECYIATNTSTMSPT---EIASFTKRPERVIAMHFF-NPVHKM------- 147 (288)
T ss_pred CCEEEEeccCCHHHHHHHHH---HHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEEecC-CCcccC-------
Confidence 99999999888777655442 666677788866 677776654 34444432 255666 666543
Q ss_pred ceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 181 TLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 181 ~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
.++.++++ ++++++.+.++++.+|+ ++++++ .|. . ++ ......++|++.+.+....+++++...+.
T Consensus 148 ~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf--~---~n----Rl~~~~~~ea~~~~~~gv~~~~~iD~~~~ 218 (288)
T PRK09260 148 KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGF--V---TS----RISALVGNEAFYMLQEGVATAEDIDKAIR 218 (288)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccH--H---HH----HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56788887 99999999999999999 788876 443 1 11 22335678988877765567888887776
Q ss_pred cCC
Q 018694 256 TGA 258 (351)
Q Consensus 256 ~~~ 258 (351)
.+.
T Consensus 219 ~g~ 221 (288)
T PRK09260 219 LGL 221 (288)
T ss_pred hCC
Confidence 554
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=149.05 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=144.6
Q ss_pred CCCCCCCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 43 DPVCPTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 43 ~~~~~~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
.+.++.++||+||| +|.||..+|..|.++|++|++||+++. ++.++++.++|+||+|+ +.....+
T Consensus 92 ~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilav-P~~~~~~ 157 (374)
T PRK11199 92 KTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSV-PIHLTEE 157 (374)
T ss_pred cccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeC-cHHHHHH
Confidence 44445678999998 999999999999999999999998631 35667788999999999 5555677
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe-ccCCCCchhhccCceeEEecC-CHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID-APVSGGDRGAKTGTLAIFAGG-DESVVQKLNPL 199 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~-~pv~~~~~~~~~g~~~~~~~g-~~~~~~~v~~l 199 (351)
++. ++.+ +.++++|+|+++..+.....+.+... + .|+. .|++|.......+..+++.++ +++..+.+.++
T Consensus 158 ~~~----~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~-~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 158 VIA----RLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--G-PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHH----HHhC-CCCCcEEEECCCccHHHHHHHHHhCC--C-CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 887 7777 88999999999887766666665543 2 5774 499998766556666666666 66788899999
Q ss_pred HHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018694 200 FALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLN 252 (351)
Q Consensus 200 l~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 252 (351)
++.+|. +++++..+....++++..+ .++.+++++..+++ .+.+.+.+.+
T Consensus 230 ~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 230 IQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 999999 8889988888898888833 57777788777766 7777666533
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-17 Score=157.74 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=140.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
..||+|||+|.||..||..|+++|++|++||++++.++.. .++| +..++++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3689999999999999999999999999999999877542 2233 345677765 46
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc----CCCcEEe-ccCCCCchhhcc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS----KNCSAID-APVSGGDRGAKT 179 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~----~~~~~v~-~pv~~~~~~~~~ 179 (351)
+||+||.|+|...++++.+.+ ++...+.+++++. .++++... .++++.+.. .|.+|++ +|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~---~l~~~~~~~~Ila-snTStl~i-~~iA~~~~~p~r~~G~HFf~Papv~-------- 150 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFA---QLEELCPADTIIA-SNTSSLSI-TAIAAGLARPERVAGLHFFNPAPVM-------- 150 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHH---HHHhhCCCCeEEE-ECCCCCCH-HHHHHhcCcccceEEEeccCccccC--------
Confidence 999999999999999888772 4545555555544 33332332 245555532 3677776 5666
Q ss_pred CceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 180 GTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 180 g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++.+++| ++++.+.+.++++.+|+ ++++++ .|. ++|+++ ..++.|++.++++.+.+++++.+++
T Consensus 151 -~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~----~~~~~EA~~l~e~g~a~~~~ID~al 220 (503)
T TIGR02279 151 -ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVA----RPYYAEALRALEEQVAAPAVLDAAL 220 (503)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 36788888 99999999999999999 788887 553 344444 3579999999999999999999998
Q ss_pred hcCC
Q 018694 255 STGA 258 (351)
Q Consensus 255 ~~~~ 258 (351)
+.+.
T Consensus 221 ~~~~ 224 (503)
T TIGR02279 221 RDGA 224 (503)
T ss_pred HhcC
Confidence 7654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=145.19 Aligned_cols=192 Identities=18% Similarity=0.181 Sum_probs=138.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----C--------------CcccCCHHHhhcCCCE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----G--------------AHLADSPHSLASQSDV 108 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~~Di 108 (351)
.++||+|||+|.||..|+..|+++|++|++||+++++++.+.+. + +...++.++.++++|+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 35799999999999999999999999999999998877665441 1 2345677788889999
Q ss_pred EEEecCChhH-HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEe
Q 018694 109 VFSIVGYPSD-VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFA 186 (351)
Q Consensus 109 Ii~~vp~~~~-~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~ 186 (351)
||+|+|+..+ ...++. ++.+.+.++++|++.+++.+ ..++.+.+.. ..+++.. |+.+... +.+..++
T Consensus 83 Vi~av~~~~~~~~~v~~----~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~~----~~l~~i~ 151 (311)
T PRK06130 83 VIEAVPEKLELKRDVFA----RLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPADV----IPLVEVV 151 (311)
T ss_pred EEEeccCcHHHHHHHHH----HHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCcc----CceEEEe
Confidence 9999976654 455666 66666666667666665543 3466666542 2344444 3322211 1234444
Q ss_pred cC---CHHHHHHHHHHHHhhCc-eEEcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 018694 187 GG---DESVVQKLNPLFALMGK-VNYMGG--SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAA 259 (351)
Q Consensus 187 ~g---~~~~~~~v~~ll~~~g~-~~~~g~--~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~ 259 (351)
.+ +++..+.+.++++.+|. +++++. .|. +++|++. ..++|++.++++.|++++++.+++..+.+
T Consensus 152 ~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 152 RGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 44 68999999999999999 777764 344 5566643 56999999999999999999999876554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=149.78 Aligned_cols=194 Identities=16% Similarity=0.260 Sum_probs=147.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-cCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+||| +|.||.+++..|.+.|++|++|+|++++...++. .|+....+..+.+.++|+||+|+ +...+.+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlav-p~~~~~~vl~--- 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISV-PINVTEDVIK--- 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEec-CHHHHHHHHH---
Confidence 6899997 8999999999999999999999999877544443 37766778888889999999999 6677788888
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC---CHHHHHHHHHHHHhh
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPLFALM 203 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~ 203 (351)
++.+.+.++++|+|+++......+.+.+.++ .+..|+.+ |++|.......+..++++++ +++..+.++++|+.+
T Consensus 77 -~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 77 -EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred -HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 8888889999999999987777777777764 47789988 88876554556666666654 577889999999999
Q ss_pred Cc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 204 GK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 204 g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
|. ++++++.... +++.+.....++.++..+..+ .+.|++.++....
T Consensus 155 G~~v~~~~~e~HD---~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 155 GARVIVTSPEEHD---RIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred CCEEEECCHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 98 6666654332 333444444444445444433 6678887765443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-17 Score=147.80 Aligned_cols=171 Identities=17% Similarity=0.235 Sum_probs=131.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|||+|||+|.||.+++..|.++|++|++||++++..+.+.+.|.. ...+..+.+.++|+||+|+ ++..+.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilav-p~~~~~~~~~---- 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILAL-PIGLLLPPSE---- 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcC-CHHHHHHHHH----
Confidence 589999999999999999999999999999999888887777642 2323335678999999999 6677777888
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCc-hhh-------ccCceeEEec---CCHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGD-RGA-------KTGTLAIFAG---GDESVVQKL 196 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~-~~~-------~~g~~~~~~~---g~~~~~~~v 196 (351)
++.+.+.++.+|+|+++..+...+.+.+. ...|+.. |+.|.. .+. ..+..++++. ++++..+.+
T Consensus 76 ~l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v 151 (279)
T PRK07417 76 QLIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIV 151 (279)
T ss_pred HHHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHH
Confidence 88888888999999888765554444332 2347774 888765 222 2344344433 378888999
Q ss_pred HHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHH
Q 018694 197 NPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229 (351)
Q Consensus 197 ~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~ 229 (351)
+++++.+|. ++++++.+....++++++......
T Consensus 152 ~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 152 EELAVSLGSKIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence 999999999 778999999999999988776554
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=142.15 Aligned_cols=201 Identities=16% Similarity=0.175 Sum_probs=139.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC---e-EEEEeC-CcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY---T-VTVFNR-TLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~---~-V~~~dr-~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+||+|||+|.||.+++..|.+.|+ + +++++| ++++.+.+.+. ++..+.+.+++++++|+||+|+ +++..+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiav-p~~~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAM-PPSAHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEec-CHHHHHHH
Confidence 4789999999999999999998873 3 777887 46777777654 6777778888899999999999 67778989
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
+. ++.+.+. +++||+++.+.. .+.+.+.++ .+..++.. |++....+.....+.+....+++..+.++++|+
T Consensus 83 ~~----~l~~~~~-~~~vis~~~gi~--~~~l~~~~~-~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~ 154 (245)
T PRK07634 83 LA----ELSPLLS-NQLVVTVAAGIG--PSYLEERLP-KGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILK 154 (245)
T ss_pred HH----HHHhhcc-CCEEEEECCCCC--HHHHHHHcC-CCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHH
Confidence 98 7776664 679999998754 335666664 23344444 877665554322222222348888999999999
Q ss_pred hhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCC
Q 018694 202 LMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 202 ~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
.+|..+++.+...-.+ .+.....-.++..+.|++. .+.+.|+++++..+++.....+
T Consensus 155 ~~G~~~~~~e~~~~~~--~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g 212 (245)
T PRK07634 155 GIGTSQLCTEEEVHQL--TAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISG 212 (245)
T ss_pred hCCCEEEECHHHcchH--HhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999666654211111 0111111124455666555 7899999999999988766543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=136.52 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=138.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c---------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I---------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~~Di 108 (351)
..||+|||+|.||..||..|+.+|++|++||++++..+.+.+ . .+...+++++++.+||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 478999999999999999999999999999999876544322 1 23566788899999999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~ 187 (351)
|+.|+|...+++..+.. ++...+.+++ ||..+++ .....++.+.+... -+++-. +..+... -.++.++.
T Consensus 87 ViEavpE~l~vK~~lf~---~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~----~pLVEVv~ 156 (321)
T PRK07066 87 IQESAPEREALKLELHE---RISRAAKPDA-IIASSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYL----LPLVEVLG 156 (321)
T ss_pred EEECCcCCHHHHHHHHH---HHHHhCCCCe-EEEECCC-ccCHHHHHHhcCCc-ccEEEEecCCcccc----CceEEEeC
Confidence 99999999988877763 6666677776 5545544 33345666666432 234333 2222211 13455555
Q ss_pred C---CHHHHHHHHHHHHhhCc-eEEcC-C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 188 G---DESVVQKLNPLFALMGK-VNYMG-G-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 188 g---~~~~~~~v~~ll~~~g~-~~~~g-~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
+ ++++.+.+..+++.+|+ .+.+. + .|. . +| .....++.|++.+.+....+++++..++..+.+.
T Consensus 157 g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGF--i---~N----Rl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGF--I---AD----RLLEALWREALHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEeEecCCCCccH--H---HH----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 4 88999999999999998 66664 3 332 2 12 2344568999999888889999999998877654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-16 Score=141.68 Aligned_cols=191 Identities=21% Similarity=0.235 Sum_probs=135.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchh-----------HHhcC-------------CcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-----------LLDIG-------------AHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~~~~~~ 103 (351)
.+.||+|||+|.||..||..++.+|++|++||++++.++. +.+.| +..+++. +.+
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~ 82 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF 82 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence 3568999999999999999999999999999999987655 33333 2356777 457
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCC-CCCcEEEecCCCChhHHHHHHHHHh--cC--CCcEEe-ccCCCCchhh
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGL-RPGGIIVDMTTSEPSLASELSAAAS--SK--NCSAID-APVSGGDRGA 177 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l-~~~~~ii~~s~~~~~~~~~l~~~~~--~~--~~~~v~-~pv~~~~~~~ 177 (351)
++||+||.|+|+..++++.+.+ .+...+ .+++++++.+++.+.. .+..... ++ +.+|.. +++.+..
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~---~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~~r~~g~hf~~P~~~~~lv--- 154 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFA---ELDKVVTDPDAVLASNTSSIPIM--KLAAATKRPGRVLGLHFFNPVPVLPLV--- 154 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHH---HHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCccEEEEecCCCcccCceE---
Confidence 8999999999999999988873 444455 6889999888876654 3444332 23 455555 2333221
Q ss_pred ccCceeEEecCCHHHHHHHHHHHH-hhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 178 KTGTLAIFAGGDESVVQKLNPLFA-LMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 178 ~~g~~~~~~~g~~~~~~~v~~ll~-~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++....+++++.+.+.+++. .+|+ ++.+++ .|. . ++ ......++|++.+.+....+++++...+
T Consensus 155 ---Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf--i---~n----Ri~~~~~~Ea~~ll~eGv~~~~dID~~~ 222 (286)
T PRK07819 155 ---ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF--V---VN----ALLVPYLLSAIRMVESGFATAEDIDKAM 222 (286)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh--H---HH----HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 222223458999999999988 5999 677776 443 1 11 2244567899888776657788888887
Q ss_pred hcCCC
Q 018694 255 STGAA 259 (351)
Q Consensus 255 ~~~~~ 259 (351)
..+.+
T Consensus 223 ~~g~G 227 (286)
T PRK07819 223 VLGCA 227 (286)
T ss_pred HhCCC
Confidence 66543
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=140.65 Aligned_cols=196 Identities=18% Similarity=0.229 Sum_probs=137.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc----cCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL----ADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~----~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
+||+|||+|.||.+++..|.++|++|.+|+++++..+.....+... .++.++++.++|+||+|+ ++..+.+++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilav-P~~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAV-PVDATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeC-CHHHHHHHHH-
Confidence 3799999999999999999999999999999877654444333322 346677889999999999 6677889998
Q ss_pred CCCCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch--------hhccCceeEEec---CCHHH
Q 018694 126 PSSGALS-GLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR--------GAKTGTLAIFAG---GDESV 192 (351)
Q Consensus 126 ~~~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~--------~~~~g~~~~~~~---g~~~~ 192 (351)
++.+ .+.++.+|.|+++......+.+.+.+ ..+..|+.. |+.|... ....+..++++. .+++.
T Consensus 79 ---~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 79 ---ELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred ---HHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 7876 47788999998888776666665553 346788885 8777531 222444455554 37888
Q ss_pred HHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 193 VQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 193 ~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
++.++++++.+|. +++++.........++....... +++ ++...+.+.+...++...+.
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~i-----a~a--l~~~~~~~~~~~~~la~~gf 214 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHIL-----ASS--LAARLAGEHPLALRLAAGGF 214 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHH-----HHH--HHHhhccCchHHHhhhcccc
Confidence 9999999999999 66777655444544444433322 233 35555666666555555544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=138.87 Aligned_cols=186 Identities=17% Similarity=0.223 Sum_probs=129.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchh-----------HHhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-----------LLDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~ 104 (351)
++||+|||+|.||..||..|+.+|++|++||+++++++. +.+.| +...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 468999999999999999999999999999999877643 22222 2233344 5678
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEe-cCCCChhHHHHHHHHHhc----CCCcEEeccCCCCchhhcc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVD-MTTSEPSLASELSAAASS----KNCSAIDAPVSGGDRGAKT 179 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~-~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~~~~~~~ 179 (351)
+||+||+|+|...++++.+.. ++...+.++++|++ +++..+ ..+.+.+.. .+++|.+.|...
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~---~l~~~~~~~~il~s~tS~i~~---~~l~~~~~~~~r~~g~h~~~pp~~~------- 149 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFS---ELDRICKPSAILASNTSSISI---TRLASATQRPQQVIGMHFMNPPPIM------- 149 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHH---HHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcceEEEeccCCcccC-------
Confidence 999999999877776666542 56667778888874 444433 345554432 134555555442
Q ss_pred CceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 180 GTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 180 g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++.++.+ +++..+.+.++|+.+|+ ++++++ .|. ++++++ ...++|++.+.+....+++++...+
T Consensus 150 -~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g~-----i~nri~----~~~~~ea~~~~~~gv~~~~~iD~~~ 219 (295)
T PLN02545 150 -KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPGF-----IVNRIL----MPMINEAFYALYTGVASKEDIDTGM 219 (295)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcccH-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33445543 88999999999999999 667776 342 334433 3458899998887778888888776
Q ss_pred hcCC
Q 018694 255 STGA 258 (351)
Q Consensus 255 ~~~~ 258 (351)
..+.
T Consensus 220 ~~g~ 223 (295)
T PLN02545 220 KLGT 223 (295)
T ss_pred Hhcc
Confidence 6544
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=128.97 Aligned_cols=164 Identities=20% Similarity=0.347 Sum_probs=124.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhcCCccc--CCH-HHhhcCCCEEEEecCChhHHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHLA--DSP-HSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~g~~~~--~~~-~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+++|+|+|+|.||.+++..|.+.|+.|.+++++... .+...+.|+... .+. .+....+|+||+|| |...+.++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Vivav-Pi~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAV-PIEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEec-cHHHHHHH
Confidence 3589999999999999999999999988777665443 333333344321 222 45667799999999 88888999
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC--chhhccCceeEEecC---CHHHHHHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG--DRGAKTGTLAIFAGG---DESVVQKL 196 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~--~~~~~~g~~~~~~~g---~~~~~~~v 196 (351)
+. ++.+.++++.+|.|.++......+.+.+..+... .|+.+ |++|+ ......+..++++.. +.+..+.+
T Consensus 81 l~----~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 81 LK----ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred HH----HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 99 8988999999999999998877777777765545 89988 99998 555556776666655 45678888
Q ss_pred HHHHHhhCc-eEEcCCccHHHH
Q 018694 197 NPLFALMGK-VNYMGGSGKGQF 217 (351)
Q Consensus 197 ~~ll~~~g~-~~~~g~~g~a~~ 217 (351)
.++++.+|. ++++.....-..
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~ 177 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRV 177 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHH
Confidence 999999998 666665444444
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-15 Score=136.15 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=130.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh--------------cC-------------CcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD--------------IG-------------AHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~--------------~g-------------~~~~~~~~~ 101 (351)
+.||+|||+|.||..+|..|+.+|++|++||++++.++...+ .| +...++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 368999999999999999999999999999999887653211 12 1233444 5
Q ss_pred hhcCCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEe-ccCCCCch
Q 018694 102 LASQSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAID-APVSGGDR 175 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~-~pv~~~~~ 175 (351)
.+.++|+||+|+|+...+ ..++. ++.+.+.+++++++.+++.+ ..++++.+... +.+|.. +++.+.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~----~l~~~~~~~~il~S~tsg~~--~~~la~~~~~~~r~ig~hf~~P~~~~~~-- 153 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFA----ELERNVSPETIIASNTSGIM--IAEIATALERKDRFIGMHWFNPAPVMKL-- 153 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHH----HHHhhCCCCeEEEEcCCCCC--HHHHHhhcCCcccEEEEecCCCcccCcc--
Confidence 678999999999777654 44555 67677778888887666543 45666666432 334443 233322
Q ss_pred hhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018694 176 GAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLN 252 (351)
Q Consensus 176 ~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 252 (351)
+-++.+. +++..+.+.++++.+|+ ++++++.+.....++..|+ +.|++.+.+..-.+++++..
T Consensus 154 ------vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~iD~ 219 (291)
T PRK06035 154 ------IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKDIDE 219 (291)
T ss_pred ------EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHHHHH
Confidence 1122222 88999999999999999 8888887776676666664 45887776554467888888
Q ss_pred HHhcCCC
Q 018694 253 AISTGAA 259 (351)
Q Consensus 253 ~~~~~~~ 259 (351)
++..+.+
T Consensus 220 ~~~~~~g 226 (291)
T PRK06035 220 MCKLAFG 226 (291)
T ss_pred HHhhcCC
Confidence 8765543
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=131.38 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=121.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.+|||+|||+|.||.+++..|.+.|++|++|+++.. .+.....|+....+.++++ .++|+||+|+ ++..+.+++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilav-p~~~~~~vl~-- 110 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCT-SILSTEAVLR-- 110 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEec-CHHHHHHHHH--
Confidence 357999999999999999999999999999999863 2333445776677888876 4799999999 6778899998
Q ss_pred CCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchh--hccCceeEEec-------CCHHHHHH
Q 018694 127 SSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRG--AKTGTLAIFAG-------GDESVVQK 195 (351)
Q Consensus 127 ~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~--~~~g~~~~~~~-------g~~~~~~~ 195 (351)
++ .+.+.++++|+|++++.....+.+.+.++ .+..|+.+ |+.|.... ...+...++.. .+++..+.
T Consensus 111 --~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 111 --SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred --hhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 77 56678899999999976555666666654 35678887 88887643 22233233322 26678889
Q ss_pred HHHHHHhhCc-eEEcCCccHHHH
Q 018694 196 LNPLFALMGK-VNYMGGSGKGQF 217 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~g~a~~ 217 (351)
+.++++.+|. ++.+.....-..
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~ 210 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRY 210 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHH
Confidence 9999999998 666665433333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=134.01 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=129.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------cC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------IG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 104 (351)
.+||+|||+|.||..||..|+.+|++|++||++++.++.+.+ .| +...++.+ .+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 468999999999999999999999999999999887655322 12 34456665 468
Q ss_pred CCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEe-ccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAID-APVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~-~pv~~~~~~~~ 178 (351)
++|+||+|+|...+++ .++. ++.+.+.+++++++.+++.+ . ..+++.+... +++|++ +|..+.
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~----~l~~~~~~~~ii~s~ts~~~-~-s~la~~~~~~~r~~g~h~~~p~~~~~~----- 151 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFA----QLCPVLKPEAILATNTSSIS-I-TRLASATDRPERFIGIHFMNPVPVMKL----- 151 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHH----HHHhhCCCCcEEEEcCCCCC-H-HHHHhhcCCcccEEEeeccCCcccCce-----
Confidence 9999999998776654 4455 77777888888885444333 2 2566655321 455555 232211
Q ss_pred cCceeEE--ecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 179 TGTLAIF--AGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 179 ~g~~~~~--~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.++ .+++++.++.+.++++.+|+ ++++++.+ -+++++++. ..+.|++.+.+..-.+++++...+.
T Consensus 152 ---vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 152 ---VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYEGVGSVEAIDTAMK 220 (292)
T ss_pred ---EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1222 24589999999999999999 77777644 334455543 4478888877664457888877775
Q ss_pred cCC
Q 018694 256 TGA 258 (351)
Q Consensus 256 ~~~ 258 (351)
.+.
T Consensus 221 ~g~ 223 (292)
T PRK07530 221 LGA 223 (292)
T ss_pred hCC
Confidence 444
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-14 Score=128.00 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=118.0
Q ss_pred CeEEEEccChh--------------------hHHHHHHHHHCCCeEEEEeCCcccc-----hhHHhcCCcccCCHHHhhc
Q 018694 50 TRIGWIGTGVM--------------------GRSMCAHLLNAGYTVTVFNRTLSKA-----QPLLDIGAHLADSPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~m--------------------G~~ia~~L~~~g~~V~~~dr~~~~~-----~~~~~~g~~~~~~~~~~~~ 104 (351)
|||.|.|+|+. |..||.+|.++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 78999999987 8899999999999999999987654 3577789999999999999
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHH---HhcCCCcEEe---ccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAA---ASSKNCSAID---APVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~---~~~~~~~~v~---~pv~~~~~~~~ 178 (351)
++|+||+|+|++.++++++. ++.+.+.++++|||+||+.|.....+.+. +.++.+.+.+ +.+.+.+.+
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~----GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~-- 154 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIAR----TIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH-- 154 (341)
T ss_pred CCCEEEEecCCHHHHHHHHH----HHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC--
Confidence 99999999999999999987 88888999999999999999887766555 3334444332 233333221
Q ss_pred cCceeEEecC--------CHHHHHHHHHHHHhhCc-eEEc
Q 018694 179 TGTLAIFAGG--------DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 179 ~g~~~~~~~g--------~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
...++.+. +++..+++.++.+..++ ++.+
T Consensus 155 --~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 155 --GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred --ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 11222221 78888999999999988 4443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=128.57 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=118.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------CCc---ccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------GAH---LADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------g~~---~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+||| +|+||.+++..|.++|++|++++|++++.+.+.+. |+. ...+..+.+.++|+||+|+ +++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav-p~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV-PWD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC-CHH
Confidence 6899997 89999999999999999999999999887766542 211 1235677788999999999 888
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhH---------------HHHHHHHHhcCCCcEEec-cCCCCchh----h
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL---------------ASELSAAASSKNCSAIDA-PVSGGDRG----A 177 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~---------------~~~l~~~~~~~~~~~v~~-pv~~~~~~----~ 177 (351)
.+.+++. ++.+.+. +++||+++++.... .+.+++.++. +.+++.+ ++.+.... .
T Consensus 80 ~~~~~l~----~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~ 153 (219)
T TIGR01915 80 HVLKTLE----SLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDD 153 (219)
T ss_pred HHHHHHH----HHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCC
Confidence 8888888 7766554 58999999975421 2445555542 2566666 33332211 1
Q ss_pred ccCceeEEecCCHHHHHHHHHHHHhh-Cc-eEEcCCccHHHHHH
Q 018694 178 KTGTLAIFAGGDESVVQKLNPLFALM-GK-VNYMGGSGKGQFAK 219 (351)
Q Consensus 178 ~~g~~~~~~~g~~~~~~~v~~ll~~~-g~-~~~~g~~g~a~~~k 219 (351)
..+...+++|.++++.+.+.++.+.+ |+ .+++|+...+..+.
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 12333566666788899999999999 98 99999866655543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=133.16 Aligned_cols=168 Identities=19% Similarity=0.343 Sum_probs=125.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCC--cccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+||+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|+ ....+.++.+.++|+||+|+ ++....+++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-p~~~~~~v~~ 84 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-PVGASGAVAA 84 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-CHHHHHHHHH
Confidence 4799999999999999999999985 89999999988877777664 24457778888999999999 6666777887
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch-hh-------ccCceeEEe---cCCHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR-GA-------KTGTLAIFA---GGDESV 192 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~-~~-------~~g~~~~~~---~g~~~~ 192 (351)
++.+.+.++.+|+++++......+.+.+.++ .+++|+.+ |+.|+.. +. ..+..++++ +++++.
T Consensus 85 ----~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~ 159 (307)
T PRK07502 85 ----EIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred ----HHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence 7777788899999988876666655655543 46788887 8886542 11 123333333 347888
Q ss_pred HHHHHHHHHhhCc-eEEcCCccHHHHHHHHH
Q 018694 193 VQKLNPLFALMGK-VNYMGGSGKGQFAKLAN 222 (351)
Q Consensus 193 ~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~ 222 (351)
.+.+.++++.+|. +++++........-++.
T Consensus 160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s 190 (307)
T PRK07502 160 VARLTAFWRALGARVEEMDPEHHDLVLAITS 190 (307)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHh
Confidence 8999999999998 66766544443433333
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=132.65 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--------------cCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 59 VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--------------ADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 59 ~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--------------~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||+.+|..|.++|++|++++|+ ++.+.+++.|+.+ .+++++ ..++|+||+|| |..++++++.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~v-Ks~~~~~~l~ 77 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITV-KAYQTEEAAA 77 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEec-cchhHHHHHH
Confidence 48999999999999999999997 6677777665322 222333 45799999999 8889999999
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC----cEEeccCCC-Cch-hhccCceeEEecC-C--HHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC----SAIDAPVSG-GDR-GAKTGTLAIFAGG-D--ESVVQK 195 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~----~~v~~pv~~-~~~-~~~~g~~~~~~~g-~--~~~~~~ 195 (351)
.+.+.+.++++|+.+.|+ .+..+.+.+.++...+ .+..+-..+ +.. ....+. +..|. + .+..+.
T Consensus 78 ----~l~~~l~~~~~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~~~~~~~~ 150 (293)
T TIGR00745 78 ----LLLPLIGKNTKVLFLQNG-LGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGA--TKIGDYVGENEAVEA 150 (293)
T ss_pred ----HhHhhcCCCCEEEEccCC-CCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEecccc--EEEecCCCchHHHHH
Confidence 898988899999999998 4445667666643221 122221111 111 111122 22232 2 234566
Q ss_pred HHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCHH--HHH
Q 018694 196 LNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGLNVE--LFL 251 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi~~~--~~~ 251 (351)
+.++|+..+. +....++-...|.|++.|...+. +..++.|+..++++.|++.+ .+.
T Consensus 151 l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 230 (293)
T TIGR00745 151 LAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVE 230 (293)
T ss_pred HHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 7777777676 66777899999999998875442 45668899999999997643 233
Q ss_pred HHHhcCC----CC-chhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 252 NAISTGA----AG-SKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 252 ~~~~~~~----~~-s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.+.... .. +.++ ..+.++... +++.+. +++++.++++|+++|.++.++++++...
T Consensus 231 ~~~~~~~~~~~~~~sSm~----~D~~~gr~t---Eid~i~---G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 231 ELVRAVIRMTAENTSSML----QDLLRGRRT---EIDAIN---GAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHHHHHHhcCCCCCChHH----HHHHcCCcc---hHHHhc---cHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 3332211 10 1111 111111111 233333 7899999999999999999999987654
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=129.05 Aligned_cols=190 Identities=17% Similarity=0.186 Sum_probs=131.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch-----------hHHhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-----------PLLDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-----------~~~~~g-------------~~~~~~~~~~~~ 104 (351)
|+||+|||+|.||..+|..|+.+|++|++||+++++++ .+.+.| +..+++.++ +.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 57899999999999999999999999999999988764 233333 233556554 78
Q ss_pred CCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCce
Q 018694 105 QSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTL 182 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~ 182 (351)
+||+||+|+|+...++ +++. ++.+++.+++++++.+++.+ . ..+.+.+.. ..+++.. |+.+.... ..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~----~l~~~~~~~~il~s~ts~~~-~-~~la~~~~~-~~r~ig~h~~~P~~~~----~~ 150 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFA----QLDEIAKPEAILATNTSSLS-I-TELAAATKR-PDKVIGMHFFNPVPVM----KL 150 (282)
T ss_pred cCCeeeecccccHHHHHHHHH----HHHhhCCCCcEEEECCCCCC-H-HHHHHhhCC-CcceEEeeccCCcccC----cc
Confidence 9999999997767666 6666 77777888888866665533 2 367666643 2345554 44433322 11
Q ss_pred eEEe---cCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 183 AIFA---GGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 183 ~~~~---~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
..++ +.+++..+.+.++++.+|+ ++++++.. +.. ........++|++.+.+..-.+++++...+..+.
T Consensus 151 vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~-g~i-------~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 151 VEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAP-GFV-------VNRILIPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc-ChH-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 2233 2389999999999999999 77776522 111 1223455678988887766577888887776554
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=130.43 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=131.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------------CCcccCCHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------------GAHLADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------------g~~~~~~~~~~~ 103 (351)
++||+|||+|.||..+|..|+.+|++|++||++++.++...+. ++..+++.++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 4789999999999999999999999999999998765544221 234577888888
Q ss_pred cCCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCc
Q 018694 104 SQSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGT 181 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~ 181 (351)
+++|+||+|+|...++ .+++. ++.+.+.++++|++.+++.+ ..++.+.+. ...+|+.. +..+. . ...
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~----~l~~~~~~~~ii~sntSt~~--~~~~~~~~~-~~~r~vg~Hf~~p~-~---~~~ 151 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYE----ELAKVAPEKTIFATNSSTLL--PSQFAEATG-RPEKFLALHFANEI-W---KNN 151 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHH----HHHhhCCCCCEEEECcccCC--HHHHHhhcC-CcccEEEEcCCCCC-C---cCC
Confidence 9999999999766544 45555 77777778887765544432 234555443 23345543 22211 1 123
Q ss_pred eeEEec---CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 018694 182 LAIFAG---GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTG 257 (351)
Q Consensus 182 ~~~~~~---g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~ 257 (351)
++.++. .++++.+.+.++++.+|+ ++.+.....+... + ......+.|++.+.+....+++++..++..+
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~---n----Ri~~~~~~ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYIL---N----SLLVPFLSAALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhH---H----HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 445543 388999999999999999 6666532222221 1 2244567899988887768899988887665
Q ss_pred CC
Q 018694 258 AA 259 (351)
Q Consensus 258 ~~ 259 (351)
.+
T Consensus 225 ~g 226 (287)
T PRK08293 225 TG 226 (287)
T ss_pred cC
Confidence 53
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=125.47 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=105.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------CcccCCHHHhhcCCCEEEEecCCh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------AHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
||+|||+|+||+++|..|+++|++|++|.|+++.++.+.+.+ +.++++++++++++|+||+++ +.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav-Ps 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV-PS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc-cH
Confidence 799999999999999999999999999999998887776642 446788999999999999999 88
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-h----hHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHH
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-P----SLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDES 191 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~----~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~ 191 (351)
+..+++++ ++.+++.+++.+|.++.|. . ...+.+.+.++...+.++.+|.+..++.....+...+++.+.+
T Consensus 80 ~~~~~~~~----~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVLE----QLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHHH----HHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHHH----HHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 88999999 9999999999999999874 1 2345566666655578889999998888777766666666654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=128.21 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=159.7
Q ss_pred CCeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 72 GYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 72 g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
.++|++++|++++.+.+.++ |+....+..++++++|+||+|| +|+++++++. ++.+.+.++++||+++++.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaV-kP~~i~~vl~----~l~~~~~~~~~ivS~~agi~-- 81 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAV-KPQDLEEVLS----ELKSEKGKDKLLISIAAGVT-- 81 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEe-CHHHHHHHHH----HHhhhccCCCEEEEecCCCC--
Confidence 36899999999998887665 7777888889989999999999 7999999998 78776677889999999866
Q ss_pred HHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCceEEcCCc--cHHHHHHHHHHHH
Q 018694 151 ASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGKVNYMGGS--GKGQFAKLANQIT 225 (351)
Q Consensus 151 ~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~~~~~g~~--g~a~~~kl~~n~~ 225 (351)
.+.+.+.+. .+..++++ |+.....+ .|...+..+. +++..+.++++|+.+|.++++.+. .....+ ...
T Consensus 82 ~~~l~~~~~-~~~~ivR~mPn~~~~~~--~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~tal----sgs 154 (245)
T TIGR00112 82 LEKLSQLLG-GTRRVVRVMPNTPAKVG--AGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTAL----SGS 154 (245)
T ss_pred HHHHHHHcC-CCCeEEEECCChHHHHh--CCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhh----ccC
Confidence 456766664 23456766 77654443 3444444433 567788999999999997776542 111111 111
Q ss_pred HHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhhh----hhhhcccCCCCCccchhhHHHHHHHHHHHHHhcC
Q 018694 226 IATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLDL----HGSRILKRDFEPGFFVNHFVKDLGICLKECQNMG 300 (351)
Q Consensus 226 ~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g 300 (351)
.-.++..+.|++. .+.+.|++++++.+++.....|+..+-. ....+.+.-.+||.+... .++..++.|
T Consensus 155 gPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~-------gl~~Le~~~ 227 (245)
T TIGR00112 155 GPAYVFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIA-------GLAVLEEKG 227 (245)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHH-------HHHHHHHCC
Confidence 1125566666666 7899999999999998887755433321 223344455667766543 557788889
Q ss_pred CCCcHHHHHHHHHHHHH
Q 018694 301 LALPGLALAQQLYLSLK 317 (351)
Q Consensus 301 v~~p~~~~~~~l~~~~~ 317 (351)
+..-+.+++.+..+++.
T Consensus 228 ~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 228 VRGAVIEAVEAAVRRSR 244 (245)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99888888887777664
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-15 Score=113.50 Aligned_cols=90 Identities=29% Similarity=0.464 Sum_probs=78.2
Q ss_pred eEEEEccChhhHHHHHHHHHCC---CeEEEE-eCCcccchhHHhc-CCcccC-CHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAG---YTVTVF-NRTLSKAQPLLDI-GAHLAD-SPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g---~~V~~~-dr~~~~~~~~~~~-g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||+|||+|+||.+|+..|.+.| ++|.++ +|++++.+.+.++ +..... +..++++++|+||+|| +++++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav-~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAV-KPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEE-CHHHHHHHHH
Confidence 7999999999999999999999 899955 9999999888766 556565 8999999999999999 9999999999
Q ss_pred CCCCCcccCCCCCcEEEecCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++ ....+++++||++++
T Consensus 80 ----~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 ----EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp ----HH-HHHHTTSEEEEESTT
T ss_pred ----HH-hhccCCCEEEEeCCC
Confidence 78 667899999998864
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=125.94 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=129.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch-hHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh-hCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-PLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL-LHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~-~~~~ 127 (351)
+||+|||+|+||.++|.+|.+.|++|++++++.++.. ...+.|+... +.+++++++|+|++|+| +....+++ .
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVP-d~~~~~V~~~--- 92 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLP-DEVQAEVYEE--- 92 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCC-HHHHHHHHHH---
Confidence 7899999999999999999999999999887755433 3334477654 88999999999999995 55558888 5
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch-----hhccCceeEE-ecCC--HHHHHHHHH
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR-----GAKTGTLAIF-AGGD--ESVVQKLNP 198 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~-----~~~~g~~~~~-~~g~--~~~~~~v~~ 198 (351)
++.+.+.++++|+ .+.+..-. ... ..+..++.++.. |..++.. ....|...++ +..+ .+..+.+..
T Consensus 93 -~I~~~Lk~g~iL~-~a~G~~i~--~~~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 93 -EIEPNLKEGAALA-FAHGFNIH--FGQ-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred -HHHhcCCCCCEEE-ECCCCChh--hce-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 7888888888884 55443221 222 222346666655 7776651 1223444455 4444 788899999
Q ss_pred HHHhhCc-e---EEc--CC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 199 LFALMGK-V---NYM--GG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 199 ll~~~g~-~---~~~--g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
++..+|. . +.+ .+ .....+ .- ...+..+...++..++......|++++.++
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~dl~-ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETDLF-GE-QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHcCCCccceeeeeecccccccch-hh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999997 2 211 11 111111 11 344555666777788889999999997654
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-14 Score=119.60 Aligned_cols=161 Identities=21% Similarity=0.177 Sum_probs=112.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhc-CCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDI-GAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~-g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
||+|+|+|+|+||.+++..|+++||+|++.+|+.+ +.+...+. +.. .-.+++++++.+|+||++| +...+.+++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAV-P~~a~~~v~~- 78 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAV-PFEAIPDVLA- 78 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEec-cHHHHHhHHH-
Confidence 68999999999999999999999999999966544 44333332 222 2357788888999999999 7788888888
Q ss_pred CCCCcccCCCCCcEEEecCCCC---------------hhHHHHHHHHHhcCCCcEEec------cCCCCchhhccCceeE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSE---------------PSLASELSAAASSKNCSAIDA------PVSGGDRGAKTGTLAI 184 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~---------------~~~~~~l~~~~~~~~~~~v~~------pv~~~~~~~~~g~~~~ 184 (351)
++...+. +++|||.++.. -..++.+++.++. .+++.+ ...............+
T Consensus 79 ---~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~--akVVkAFn~i~a~~l~~~~~~~~~~~v~ 152 (211)
T COG2085 79 ---ELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG--AKVVKAFNTIPAAVLADLAKPGGRRDVL 152 (211)
T ss_pred ---HHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC--cchhhhhcccCHHHhccCCCcCCceeEE
Confidence 7777665 89999999841 1234455555543 234333 1111111111123345
Q ss_pred EecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHH
Q 018694 185 FAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQF 217 (351)
Q Consensus 185 ~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~ 217 (351)
++|.|.++.+.+.++.+.+|. .+.+|....+.-
T Consensus 153 vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~ 186 (211)
T COG2085 153 VAGDDAEAKAVVAELAEDIGFRPLDAGPLENARI 186 (211)
T ss_pred EecCcHHHHHHHHHHHHhcCcceeeccccccccc
Confidence 566688899999999999998 888887644444
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-13 Score=138.02 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=130.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhcCCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDIGAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
..||+|||+|.||.++++.|.+.| ++|++||+++++.+.+.+.|+. ...+.++.+.++|+||+|+ ++..+++++.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilav-p~~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAV-PVLAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECC-CHHHHHHHHH
Confidence 378999999999999999999998 4899999999887777766754 3456777888999999999 6778899998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch--------hhccCceeEEec---CCHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR--------GAKTGTLAIFAG---GDESV 192 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~--------~~~~g~~~~~~~---g~~~~ 192 (351)
.+.+.+.++.+|+++++......+.+.+.+....++|+.. |+.|+.. ....+..++++. .+++.
T Consensus 82 ----~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 82 ----DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred ----HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 8888888888999999887777777777765445666654 7775542 111233334443 37778
Q ss_pred HHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 193 VQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEG 236 (351)
Q Consensus 193 ~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea 236 (351)
.+.+.++|+.+|. ++++++.......-++.... ..+...+.|+
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~p-h~~~~~l~~~ 201 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLP-HLLAFSLVDQ 201 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchH-HHHHHHHHHH
Confidence 8999999999998 66776543333332333222 2234444454
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-13 Score=115.01 Aligned_cols=243 Identities=19% Similarity=0.243 Sum_probs=177.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchh-HHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQP-LLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~-~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||||||.|+|..++++.+...|. ++..+..+...... ++..|...+.+..+.++.+|++++|| ++..+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHhh
Confidence 689999999999999999999886 56666653333333 55668887777788889999999999 9999999999
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFA 201 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 201 (351)
++...+..+++++++..+.. ...+.+.+. ...++++. |+.+...+. +..++..+. ..+..+.++++++
T Consensus 80 ----~~~~~~~~~~iivS~aaG~t--l~~l~~~l~-~~~rviRvmpNtp~~v~e--g~sv~~~g~~~~~~D~~l~~~ll~ 150 (267)
T KOG3124|consen 80 ----EIKPKVSKGKIIVSVAAGKT--LSSLESKLS-PPTRVIRVMPNTPSVVGE--GASVYAIGCHATNEDLELVEELLS 150 (267)
T ss_pred ----cCccccccceEEEEEeeccc--HHHHHHhcC-CCCceEEecCCChhhhhc--CcEEEeeCCCcchhhHHHHHHHHH
Confidence 78777788999999998754 335666665 34566765 666655543 443332222 5566689999999
Q ss_pred hhCceEEcCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhhhh-h--
Q 018694 202 LMGKVNYMGG---------SGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLDLH-G-- 268 (351)
Q Consensus 202 ~~g~~~~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~~~-~-- 268 (351)
.+|.+..+.+ .|++.+ +...+.|+++ -+.+.|++++..+++..+...|+..+-.. .
T Consensus 151 ~vG~~~evpE~~iDavTgLsGSgPA-----------y~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qH 219 (267)
T KOG3124|consen 151 AVGLCEEVPEKCIDAVTGLSGSGPA-----------YVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQH 219 (267)
T ss_pred hcCcceeCcHHhhhHHhhccCCcHH-----------HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCC
Confidence 9998554443 355555 6677788888 78999999999999988887654433222 2
Q ss_pred -hhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 269 -SRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
-.+.+...+||.+.- +.+...|+-|++.-++.++.+.-.++++.+
T Consensus 220 P~~Lkd~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 220 PAQLKDDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred cHHHhCCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 233334456766442 356788899999999999999888888764
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=126.70 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=128.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCC-cccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT-LSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~-~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+||+|||+|+||.+++..|.+.|++|+++++. +++.+.+.+.|+... +..++++++|+|++|+|+..+...+..
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~---- 78 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEA---- 78 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHH----
Confidence 68999999999999999999999998776554 445566666687654 588888999999999955436666666
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch-------hhccCceeEE-ecC--CHHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR-------GAKTGTLAIF-AGG--DESVVQKLN 197 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~-------~~~~g~~~~~-~~g--~~~~~~~v~ 197 (351)
++.+.+.++. +|+++.+..- ..+...++ .++.++.. |+.++.. + .|...++ +.. +.+..+.+.
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i--~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G--~G~~~l~a~~~~~~~~~~~~~~ 152 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI--HFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEG--FGVPTLIAVEQDPTGEAMAIAL 152 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH--hhccccCC-CCCcEEEECCCCCcHHHHHHhhcC--CCeeEEEEecCCCCHHHHHHHH
Confidence 6777776665 7778877542 23443443 45666665 8887763 4 3443443 333 667788999
Q ss_pred HHHHhhCce-------E---EcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 198 PLFALMGKV-------N---YMGG--SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 198 ~ll~~~g~~-------~---~~g~--~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
.+|+.+|.. . .+.+ .+...+ ++..... ++..+.|++ .+.|++++.++.+.....
T Consensus 153 ~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~--l~Gs~pa--~v~~~~eal---v~~G~~~e~A~~~~~~~~ 218 (314)
T TIGR00465 153 AYAKAIGGGRAGVLETTFKEETESDLFGEQAV--LCGGLTA--LIKAGFDTL---VEAGYQPELAYFETVHEL 218 (314)
T ss_pred HHHHHcCCCccceeechhHhhhhHHhcCcchh--HHhHHHH--HHHHHHHHH---HHcCCCHHHHHHHHHHHH
Confidence 999999984 2 2221 122111 1111111 444455655 799999999888765554
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-13 Score=133.06 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=114.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc-CCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS-QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
..|||+|||+|.||..+|+.|.+.|++|++|+|+... +...+.|+....+.++++. ++|+||+|| ++..+.+++.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILav-P~~~~~~vi~-- 443 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCT-SILSTEKVLK-- 443 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECC-ChHHHHHHHH--
Confidence 4589999999999999999999999999999998543 4444557766778888775 589999999 5788888888
Q ss_pred CCCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccC--cee-----EEecCCHHH---HH
Q 018694 127 SSGALS-GLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTG--TLA-----IFAGGDESV---VQ 194 (351)
Q Consensus 127 ~~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g--~~~-----~~~~g~~~~---~~ 194 (351)
++.. .++++++|+|++++.....+.+.+.++ .+..|+.. |++|..... .| ... .+++++.+. .+
T Consensus 444 --~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~~-~G~~~~~~lf~~~~v~~~~~~~~~~~ 519 (667)
T PLN02712 444 --SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESGK-NGWNNLAFVFDKVRIGSDDRRVSRCD 519 (667)
T ss_pred --HHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccccc-cchhhhhhhccCcEeCCCcchHHHHH
Confidence 6654 567899999999886544555555543 46778854 999877541 11 011 222344434 44
Q ss_pred HHHHHHHhhCc-eEEcCCcc
Q 018694 195 KLNPLFALMGK-VNYMGGSG 213 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g 213 (351)
.+.++++.+|. ++.+....
T Consensus 520 ~l~~l~~~lGa~vv~ms~ee 539 (667)
T PLN02712 520 SFLDIFAREGCRMVEMSCAE 539 (667)
T ss_pred HHHHHHHHcCCEEEEeCHHH
Confidence 55688888998 66665533
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=118.71 Aligned_cols=146 Identities=25% Similarity=0.290 Sum_probs=94.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------------CCcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------------GAHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.+|..+|..|++.||+|++||.++++++.+++. .+...++.++++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 799999999999999999999999999999999987666542 245677888888999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH-HHhc-----CCCcEEeccCC---
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA-AASS-----KNCSAIDAPVS--- 171 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~-~~~~-----~~~~~v~~pv~--- 171 (351)
|+|||.+. .+++++. .+.+.+.++++||.-||..|++.+++.. .+.. ....+..+|-+
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~----~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~ 156 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIE----SIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE 156 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHH----HHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred EEecCCCccccCCccHHHHHHHHH----HHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence 99997553 4677888 8888899999999999999999995544 3332 13355666644
Q ss_pred CCchhhccCceeEEecC-CHHHHHHHHHH
Q 018694 172 GGDRGAKTGTLAIFAGG-DESVVQKLNPL 199 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~g-~~~~~~~v~~l 199 (351)
|.........--++.|. ++...+.++++
T Consensus 157 G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 157 GRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp TSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 22222222222344444 44444466553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=129.95 Aligned_cols=158 Identities=21% Similarity=0.278 Sum_probs=116.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.+|||+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....+.++++ .++|+||+|| ++..+.+++.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLav-P~~~~~~vl~-- 126 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCT-SIISTENVLK-- 126 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcC-CHHHHHHHHH--
Confidence 4589999999999999999999999999999998543 444455777777888855 5699999999 6788999998
Q ss_pred CCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchh--hccCceeEEec---C-CH---HHHHH
Q 018694 127 SSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRG--AKTGTLAIFAG---G-DE---SVVQK 195 (351)
Q Consensus 127 ~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~--~~~g~~~~~~~---g-~~---~~~~~ 195 (351)
++. +.+.++++|+|+++......+.+.+.++ .+..|+.. |++|.... ...+...++.+ + +. +..+.
T Consensus 127 --~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 127 --SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred --hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 775 5678899999999887655555666554 46678877 99987632 11233233332 2 22 33556
Q ss_pred HHHHHHhhCc-eEEcCCc
Q 018694 196 LNPLFALMGK-VNYMGGS 212 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~ 212 (351)
+.++++.+|. ++.+...
T Consensus 204 l~~l~~~lGa~v~~ms~e 221 (667)
T PLN02712 204 FLEVFEREGCKMVEMSCT 221 (667)
T ss_pred HHHHHHHcCCEEEEeCHH
Confidence 6799999998 6666543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.9e-13 Score=112.87 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=96.0
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c-------------CCcccCCHHHhhcCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I-------------GAHLADSPHSLASQS 106 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~~ 106 (351)
||+|||+|.||..||..++.+|++|++||++++.++...+ . .+...++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999886533221 1 256678888888 99
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEe
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFA 186 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~ 186 (351)
|+||.|+|....++.-+.. ++...+.+++++.+.+++.+ ..++.+.+.. .-+++..-.+..+.. ..++.++
T Consensus 80 dlViEai~E~l~~K~~~~~---~l~~~~~~~~ilasnTSsl~--i~~la~~~~~-p~R~ig~Hf~~P~~~---~~lVEvv 150 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFA---ELDEICPPDTILASNTSSLS--ISELAAALSR-PERFIGMHFFNPPHL---MPLVEVV 150 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHH---HHHCCS-TTSEEEE--SSS---HHHHHTTSST-GGGEEEEEE-SSTTT-----EEEEE
T ss_pred heehhhccccHHHHHHHHH---HHHHHhCCCceEEecCCCCC--HHHHHhccCc-CceEEEEeccccccc---CceEEEe
Confidence 9999999988877765553 66677788888887666544 3456655542 223333311111111 1334444
Q ss_pred cC---CHHHHHHHHHHHHhhCc-eEEc
Q 018694 187 GG---DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 187 ~g---~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+ +++..+.+..+++.+|+ ++.+
T Consensus 151 ~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 151 PGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp E-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 33 88999999999999998 5554
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=118.63 Aligned_cols=179 Identities=22% Similarity=0.237 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHCCCeEEEEeCCcccch-------h-----------HHhcC-------------CcccCC--HHHhhcCC
Q 018694 60 MGRSMCAHLLNAGYTVTVFNRTLSKAQ-------P-----------LLDIG-------------AHLADS--PHSLASQS 106 (351)
Q Consensus 60 mG~~ia~~L~~~g~~V~~~dr~~~~~~-------~-----------~~~~g-------------~~~~~~--~~~~~~~~ 106 (351)
||..||..++.+|++|++||++++..+ . +.+.| +....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 799999999999999999999985311 1 11112 333333 55778999
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc----CCCcEEeccCCCCchhhccCce
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS----KNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
|+||.|+|...+++..+.. ++...+.+++++.+ |+++....++++.+.. .|.+|.+.|..- .+
T Consensus 81 D~ViEav~E~~~~K~~~f~---~l~~~~~~~~ilaS--ntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~--------~l 147 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR---WLGRHVDADAIIAS--TTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM--------PL 147 (314)
T ss_pred CEEEECCcCCHHHHHHHHH---HHHhhCCCCcEEEE--ccccCCHHHHHhhcCCcccEEEEecCCccccC--------ce
Confidence 9999999999999888874 56667778877744 4444446677777642 255666554331 23
Q ss_pred eEEec---CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 183 AIFAG---GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 183 ~~~~~---g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
+.+++ +++++.+.+.++++.+|+ ++++++.+ + +++.......+.|++.++++.+++++++.+++..+.
T Consensus 148 vEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 148 VEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 33333 388999999999999999 88888754 2 234555677899999999999999999999987765
Q ss_pred C
Q 018694 259 A 259 (351)
Q Consensus 259 ~ 259 (351)
+
T Consensus 220 G 220 (314)
T PRK08269 220 G 220 (314)
T ss_pred C
Confidence 4
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-11 Score=115.13 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=114.0
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
+||+|||. |.||.++|+.|.+. |++|++||++.+ ...++++.+.++|+||+|+ |...+.+++.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilav-Pv~~~~~~l~--- 69 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSA-PIRHTAALIE--- 69 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeC-CHHHHHHHHH---
Confidence 68999999 99999999999864 889999998521 1346677889999999999 7788888888
Q ss_pred CCcccC---CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCc-hhhccCceeEEecC-CHHHHHHHHHHHH
Q 018694 128 SGALSG---LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGD-RGAKTGTLAIFAGG-DESVVQKLNPLFA 201 (351)
Q Consensus 128 ~~i~~~---l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~-~~~~~g~~~~~~~g-~~~~~~~v~~ll~ 201 (351)
++.+. ++++++|.|+++......+.+. ..+..|+.+ |++|++ ....++..++++.+ ..+..+.++++++
T Consensus 70 -~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~ 144 (370)
T PRK08818 70 -EYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS 144 (370)
T ss_pred -HHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence 77764 7899999999998755544442 235678887 999875 34445666666654 4444678899999
Q ss_pred hhCc-eEEcCCccHHHHHHHH
Q 018694 202 LMGK-VNYMGGSGKGQFAKLA 221 (351)
Q Consensus 202 ~~g~-~~~~g~~g~a~~~kl~ 221 (351)
.+|. ++.+.....-..+..+
T Consensus 145 ~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 145 ALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred HcCCEEEEcCHHHHHHHHHHH
Confidence 9998 6666655444444444
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-13 Score=107.19 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=73.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEE-EeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTV-FNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~-~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
-+||+|||+|++|..++..|.++||+|.. |+|+++..+.+... +-....++++.+.++|++|++| ++..+.+++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav-pDdaI~~va~-- 86 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV-PDDAIAEVAE-- 86 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S--CCHHHHHHH--
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe-chHHHHHHHH--
Confidence 38999999999999999999999999875 47887766666554 3344557788899999999999 7778999999
Q ss_pred CCCcccC--CCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 127 SSGALSG--LRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 127 ~~~i~~~--l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
++... ..++++|+++|-... .++.+-+.+.|...
T Consensus 87 --~La~~~~~~~g~iVvHtSGa~~---~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 87 --QLAQYGAWRPGQIVVHTSGALG---SDVLAPARERGAIV 122 (127)
T ss_dssp --HHHCC--S-TT-EEEES-SS-----GGGGHHHHHTT-EE
T ss_pred --HHHHhccCCCCcEEEECCCCCh---HHhhhhHHHCCCeE
Confidence 88876 779999999996543 33334444556543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=110.90 Aligned_cols=192 Identities=18% Similarity=0.174 Sum_probs=128.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
.+||+|||+|.||+.||..++.+|++|+++|++++.++.. .++| +...+++. .+.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 5799999999999999999999889999999997654332 1112 23333443 578
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
+||+||.+++...+++.-+.. ++.....+++++-+-+++.+. ..+++.... .-+++..-.+..+.- ..++.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~---~l~~~~~~~aIlASNTSsl~i--t~ia~~~~r-per~iG~HFfNP~~~---m~LVE 152 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFA---ELEALAKPDAILASNTSSLSI--TELAEALKR-PERFIGLHFFNPVPL---MPLVE 152 (307)
T ss_pred cCCEEEEeccccHHHHHHHHH---HHHhhcCCCcEEeeccCCCCH--HHHHHHhCC-chhEEEEeccCCCCc---ceeEE
Confidence 999999999998888766662 555566677776665555443 355555532 223333211111111 24555
Q ss_pred EecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 018694 185 FAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAA 259 (351)
Q Consensus 185 ~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~ 259 (351)
++.| ++++.+.+.++.+.+|+ ++...+ .|. .. | ......+.|++.+......+++++..+++.+.+
T Consensus 153 vI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGF--i~---N----Ril~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 153 VIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGF--IV---N----RLLAALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCce--eh---H----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 6665 78999999999999999 443344 333 21 1 223455788888888888999999999887664
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-11 Score=120.74 Aligned_cols=191 Identities=14% Similarity=0.079 Sum_probs=128.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH-----------hc-------------CCcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-----------DI-------------GAHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~~~~~~ 103 (351)
...||+|||+|.||..||..++.+|++|++||++++.++... ++ .+...++.+ .+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GF 390 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 357899999999999999999999999999999988654321 11 144455664 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
++||+||.|+|...+++.-+.. ++...+.+++++.+.+++.+ ..++++.+.. .-+++..-.+..+.. -.++
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~---~l~~~~~~~~ilasNTSsl~--i~~la~~~~~-p~r~~g~Hff~P~~~---~~lV 461 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLA---EVEQKVREDTILASNTSTIS--ISLLAKALKR-PENFCGMHFFNPVHR---MPLV 461 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHH---HHHhhCCCCcEEEEcCCCCC--HHHHHhhcCC-CccEEEEecCCcccc---cceE
Confidence 8999999999988888766663 66677778877776665544 3366666543 223443322211111 1334
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
.++.+ ++++.+.+..++..+|+ ++.+.+ .|. . .|=+ ...++.|++.+.+. |.+++++..++..+.
T Consensus 462 Evv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf--v----~nRi---~~~~~~ea~~lv~~-Ga~~e~ID~a~~~~~ 531 (715)
T PRK11730 462 EVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF--F----VNRV---LFPYFAGFSQLLRD-GADFRQIDKVMEKQF 531 (715)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch--h----HHHH---HHHHHHHHHHHHHc-CCCHHHHHHHHHhhC
Confidence 44444 78999999999999999 666655 332 2 2211 33446788777664 489988888876544
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=119.75 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=129.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c-------------CCcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I-------------GAHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~ 103 (351)
...||+|||+|.||..||..++.+|++|+++|++++.++...+ + .+...++.+ .+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GF 390 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 4578999999999999999999999999999999886543211 1 244455553 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
++||+||.|++...+++.-+.. ++...+.+++++.+.+++.+ ..++++.+..+ -+++..-.+..... -.++
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~---~l~~~~~~~~ilasnTS~l~--i~~ia~~~~~p-~r~ig~Hff~P~~~---~~lv 461 (714)
T TIGR02437 391 DNVDIVVEAVVENPKVKAAVLA---EVEQHVREDAILASNTSTIS--ISLLAKALKRP-ENFCGMHFFNPVHR---MPLV 461 (714)
T ss_pred cCCCEEEEcCcccHHHHHHHHH---HHHhhCCCCcEEEECCCCCC--HHHHHhhcCCc-ccEEEEecCCCccc---CceE
Confidence 8999999999988888766653 67677778877776665544 33666655432 23433311111111 1345
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
.++.+ ++++.+.+..++..+|+ ++.+.+ ..+.. .|=+ ....+.|+..+.+ .|.+++++..++..+.
T Consensus 462 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGfi----~NRl---~~~~~~ea~~l~~-eG~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 462 EVIRGEKSSDETIATVVAYASKMGKTPIVVND-CPGFF----VNRV---LFPYFGGFSKLLR-DGADFVRIDKVMEKQF 531 (714)
T ss_pred eecCCCCCCHHHHHHHHHHHHHcCCEEEEeCC-cccch----HHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHhcC
Confidence 55544 78999999999999999 666665 22222 2222 3345678888765 5689999988876544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-10 Score=116.38 Aligned_cols=189 Identities=18% Similarity=0.126 Sum_probs=126.9
Q ss_pred CCCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHH-----------hc-------------CCcccCCHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLL-----------DI-------------GAHLADSPHSL 102 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~~~~~ 102 (351)
.+.||+|||+|.||..||..++ .+|++|++||++++.++... ++ .+...++.+ .
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-G 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-H
Confidence 4578999999999999999998 58999999999987543321 11 244556664 5
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCce
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
+++||+||.|+|...+++.-+.. ++...+.+++++.+.+++.+ ..++++.+..+ -+++..-.+..+.. ..+
T Consensus 382 ~~~adlViEav~E~l~~K~~v~~---~l~~~~~~~~ilasnTS~l~--i~~la~~~~~p-~r~~g~HffnP~~~---~~l 452 (699)
T TIGR02440 382 FKDVDIVIEAVFEDLALKHQMVK---DIEQECAAHTIFASNTSSLP--IGQIAAAASRP-ENVIGLHYFSPVEK---MPL 452 (699)
T ss_pred hccCCEEEEeccccHHHHHHHHH---HHHhhCCCCcEEEeCCCCCC--HHHHHHhcCCc-ccEEEEecCCcccc---Cce
Confidence 68999999999988888765553 66677778877776665544 33666665432 23443311111111 134
Q ss_pred eEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 183 AIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 183 ~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.++.+ ++++.+.+..+++.+|+ ++.+.+. .+.. ++ ......+.|++.+.+ .|++++++...+.
T Consensus 453 VEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~-pGfi---~n----Rl~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 453 VEVIPHAGTSEQTIATTVALAKKQGKTPIVVADK-AGFY---VN----RILAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc-cchH---HH----HHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 555544 78999999999999999 6666652 2222 11 223456788887766 5678888887774
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=105.50 Aligned_cols=270 Identities=14% Similarity=0.112 Sum_probs=169.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CC-----eEEEEeCCcccch---hHHh----c--------------CCcccCCHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GY-----TVTVFNRTLSKAQ---PLLD----I--------------GAHLADSPH 100 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~-----~V~~~dr~~~~~~---~~~~----~--------------g~~~~~~~~ 100 (351)
..||+|||.|+||++||+.+.+. ++ +|..|-+....-. .+.+ . ++...+|+.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 36899999999999999998753 12 5777755432211 1111 1 255678899
Q ss_pred HhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh---------HHHHHHHHHhcCCCcEEeccCC
Q 018694 101 SLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS---------LASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 101 ~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~---------~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
+++.++|+++..+ |.+.+.++++ ++..+++++...|+++.|... .++.+.+.+. -.+.++.+|++
T Consensus 101 ea~~dADilvf~v-PhQf~~~ic~----~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNi 174 (372)
T KOG2711|consen 101 EAAKDADILVFVV-PHQFIPRICE----QLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANI 174 (372)
T ss_pred HHhccCCEEEEeC-ChhhHHHHHH----HHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCch
Confidence 9999999999999 8888999999 999999999999999986331 2333333332 34568888888
Q ss_pred CCchhhccCceeEEecCCHHH-HHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHH
Q 018694 172 GGDRGAKTGTLAIFAGGDESV-VQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVG 232 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~g~~~~-~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~ 232 (351)
..........-.-+.+.++.. -..+..+|+.-.+ +..+.+. |....+.+.+|.-.+.+...
T Consensus 175 A~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~G 254 (372)
T KOG2711|consen 175 ASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLG 254 (372)
T ss_pred HHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhh
Confidence 887766554433444443333 2347778876665 3333332 66677777788888888888
Q ss_pred HHHHHHHHHHc-CC-CHHHHHHHHhcCCCCchhhh----hhhhhcccCCCCCccchhh------------HHHHHHHHHH
Q 018694 233 LVEGMVYAHKA-GL-NVELFLNAISTGAAGSKSLD----LHGSRILKRDFEPGFFVNH------------FVKDLGICLK 294 (351)
Q Consensus 233 ~~Ea~~la~~~-Gi-~~~~~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~~------------~~kd~~~~~~ 294 (351)
+.|+..+++.. .- .++++.+.-...+.-...+. .+.+.+..+ |-++++ .....+.+.+
T Consensus 255 l~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafakt----gk~~~~~E~ell~Gq~~QG~~Ta~~Vy~ 330 (372)
T KOG2711|consen 255 LLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKT----GKSLEELEKELLNGQKLQGPATAKEVYE 330 (372)
T ss_pred HHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHc----CCCHHHHHHHhhCCCcccCcHHHHHHHH
Confidence 88988876652 22 33332222111100000000 001111111 011111 1223357889
Q ss_pred HHHhcCC--CCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 018694 295 ECQNMGL--ALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335 (351)
Q Consensus 295 ~a~~~gv--~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~ 335 (351)
++++.++ ..|++.++|+++. ++.+..++++.++.
T Consensus 331 ~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 331 LLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred HHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 9999999 7899999998874 44578888887774
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-10 Score=115.48 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c-------------CCcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I-------------GAHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~ 103 (351)
...||+|||+|.||..||..++.+|++|+++|++++.++...+ + .+..+++.+ .+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 412 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GF 412 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 4578999999999999999999999999999999886544211 1 244456665 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
.+||+||.|++...+++.-+.. ++...+.+++++.+.+++.+ ...+++.+... -+++..-.+..... -.++
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~---~l~~~~~~~~ilasNTSsl~--i~~la~~~~~p-~r~ig~Hff~P~~~---m~Lv 483 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIK---EVEAVVPPHCIIASNTSALP--IKDIAAVSSRP-EKVIGMHYFSPVDK---MQLL 483 (737)
T ss_pred ccCCeehhhccccHHHHHHHHH---HHHhhCCCCcEEEEcCCCCC--HHHHHhhcCCc-cceEEEeccCCccc---CceE
Confidence 8999999999988888766653 66677778877776555444 34666665432 23333211111111 1345
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++.+ ++++.+.+..++..+|+ ++.+.+ .|. . ++. .....+.|+..+.+ .|++++++..++
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF--i---~NR----i~~~~~~ea~~lv~-eGv~~~~ID~a~ 549 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF--Y---TTR----CLGPMLAEVIRLLQ-EGVDPKKLDKLT 549 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCc--h---HHH----HHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 45444 78899999999999999 666665 332 2 122 23455778877654 478988888775
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=116.51 Aligned_cols=189 Identities=17% Similarity=0.116 Sum_probs=127.6
Q ss_pred CCCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHH-----------hc-------------CCcccCCHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLL-----------DI-------------GAHLADSPHSL 102 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~~~~~ 102 (351)
...||+|||+|.||..||..++ .+|++|+++|++++.++... +. .+..+++. +.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RG 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HH
Confidence 3578999999999999999999 88999999999987543321 11 14445566 45
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCce
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
+++||+||.|+|...+++.-+.. ++..++.+++++.+.+++.+ ..++++.+..+ -+++..-.+..+.. -.+
T Consensus 387 ~~~aDlViEav~E~~~~K~~v~~---~le~~~~~~~ilasnTS~l~--i~~la~~~~~p-~r~ig~Hff~P~~~---~~l 457 (708)
T PRK11154 387 FKHADVVIEAVFEDLALKQQMVA---EVEQNCAPHTIFASNTSSLP--IGQIAAAAARP-EQVIGLHYFSPVEK---MPL 457 (708)
T ss_pred hccCCEEeecccccHHHHHHHHH---HHHhhCCCCcEEEECCCCCC--HHHHHHhcCcc-cceEEEecCCcccc---Cce
Confidence 68999999999988888766653 66677888888877666544 33666655432 23443322211111 134
Q ss_pred eEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 183 AIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 183 ~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.++.+ ++++.+.+..++..+|+ ++.+.+ ..+.. ..-.....+.|++.+.+. |++++++..++.
T Consensus 458 VEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d-~pGfi-------~nRl~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 458 VEVIPHAKTSAETIATTVALAKKQGKTPIVVRD-GAGFY-------VNRILAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEEec-cCcHH-------HHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 545544 88999999999999999 666655 22222 112244557888877664 788888877765
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-11 Score=111.48 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=95.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|+||..+|+.|...|++|.+|||+....+...+.|+....+++++++.||+|++++|...+++.++..
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--- 268 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA--- 268 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH---
Confidence 47899999999999999999999999999999864333333446666678999999999999999999999999863
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+....+
T Consensus 269 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i 303 (385)
T PRK07574 269 DVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHL 303 (385)
T ss_pred HHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc
Confidence 67778899999999999988888899998876544
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=102.88 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=115.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
..+|||||.|+||..+|..|.++||.|...+|+. ...+++. |....+.+.+++ +.+|+|+.|| ....+++++.
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekila-- 126 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKILA-- 126 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHHH--
Confidence 4689999999999999999999999999999985 4444444 777777777776 5799999999 8889999997
Q ss_pred CCCcccC-CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCc-eeEEe----cC----CHHHHHH
Q 018694 127 SSGALSG-LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGT-LAIFA----GG----DESVVQK 195 (351)
Q Consensus 127 ~~~i~~~-l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~-~~~~~----~g----~~~~~~~ 195 (351)
..-.. ++.++++++..+........+.++++ +.+.++.+ |.+|........+ +.++. .| .++.++.
T Consensus 127 --typfqrlrrgtlfvdvlSvKefek~lfekYLP-kdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~ 203 (480)
T KOG2380|consen 127 --TYPFQRLRRGTLFVDVLSVKEFEKELFEKYLP-KDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEF 203 (480)
T ss_pred --hcCchhhccceeEeeeeecchhHHHHHHHhCc-cccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHH
Confidence 66655 78899999998876666666777776 57777776 7777663322222 12221 23 3788899
Q ss_pred HHHHHHhhCc-eEE
Q 018694 196 LNPLFALMGK-VNY 208 (351)
Q Consensus 196 v~~ll~~~g~-~~~ 208 (351)
+.++|.+.|. .++
T Consensus 204 fleIf~cegckmVe 217 (480)
T KOG2380|consen 204 FLEIFACEGCKMVE 217 (480)
T ss_pred HHHHHHhcCCeEEE
Confidence 9999999887 444
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-11 Score=112.63 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=96.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-++|||||+|+||..+|+.|..-|++|.+||++....+...+.|+....++++++.++|+|++++|...+++.++..
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~-- 275 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK-- 275 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--
Confidence 347999999999999999999999999999999854444444456666779999999999999999999999999864
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 276 -~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 276 -ERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred -HHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCc
Confidence 67778899999999999988888899999876544
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-10 Score=101.45 Aligned_cols=153 Identities=19% Similarity=0.297 Sum_probs=108.5
Q ss_pred HHHHHHHCC--CeEEEEeCCcccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEE
Q 018694 64 MCAHLLNAG--YTVTVFNRTLSKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGII 140 (351)
Q Consensus 64 ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~i 140 (351)
||+.|.++| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+ +...+.+++. ++.+++.++++|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~Dlvvlav-P~~~~~~~l~----~~~~~~~~~~iv 75 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAV-PVSAIEDVLE----EIAPYLKPGAIV 75 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHHH----HHHCGS-TTSEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcC-CHHHHHHHHH----HhhhhcCCCcEE
Confidence 688899999 6899999999888777677754322 2256789999999999 7888999999 899999999999
Q ss_pred EecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC--------chhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eE
Q 018694 141 VDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG--------DRGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 141 i~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~--------~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~ 207 (351)
+|+++......+.+.+.++ .+..|+.+ |++|. ......|..++++.+ +++..+.++++++.+|. ++
T Consensus 76 ~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~ 154 (258)
T PF02153_consen 76 TDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVV 154 (258)
T ss_dssp EE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEE
T ss_pred EEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 9999998877777777766 68899988 88887 333445666666644 45788999999999998 66
Q ss_pred EcCCccHHHHHHHHH
Q 018694 208 YMGGSGKGQFAKLAN 222 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~ 222 (351)
.+.....-..+..+.
T Consensus 155 ~~~~eeHD~~~A~vs 169 (258)
T PF02153_consen 155 EMDAEEHDRIMAYVS 169 (258)
T ss_dssp E--HHHHHHHHHHHT
T ss_pred EcCHHHHHHHHHHHH
Confidence 665444444433333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-11 Score=98.99 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=84.4
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCH--------------HHhhcCCCEEEEecCChh
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSP--------------HSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~--------------~~~~~~~DiIi~~vp~~~ 117 (351)
|+|+|+|+||..+|..|.++|++|+++.|++ +.+.+.++|+...... .+....+|+||+|| |..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence 7899999999999999999999999999998 7888877765432222 23457899999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
++++++. .+.+.+.+++.|+.+.|+ .+..+.+.+.++.
T Consensus 79 ~~~~~l~----~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 79 QLEQALQ----SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPR 116 (151)
T ss_dssp GHHHHHH----HHCTGEETTEEEEEESSS-SSHHHHHHCHSTG
T ss_pred chHHHHH----HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCC
Confidence 9999999 899999999999999998 5666777777643
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=99.40 Aligned_cols=191 Identities=16% Similarity=0.104 Sum_probs=117.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
++|+|||+|+||.++|.+|...|++|++|++.....+.....|... .+++++++++|+|++++|.+. .++++.. +
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~-t~~V~~~---e 91 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ-QAHVYKA---E 91 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH-HHHHHHH---H
Confidence 6899999999999999999999999999987644444455557765 489999999999999997644 4777752 6
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEEe-cC--CHHHHHHHHHHH
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIFA-GG--DESVVQKLNPLF 200 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~~-~g--~~~~~~~v~~ll 200 (351)
+.+.++++++++ .+-+-.-+. ....+.+++.++ -+|-.+++.- ...|...+++ -. +..+.+......
T Consensus 92 il~~MK~GaiL~-f~hgfni~~---~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a 167 (335)
T PRK13403 92 VEENLREGQMLL-FSHGFNIHF---GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYA 167 (335)
T ss_pred HHhcCCCCCEEE-ECCCcceec---CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHH
Confidence 788888888766 444322111 122234566554 3465544321 1122222222 11 334667777777
Q ss_pred HhhCc----eEEcCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 201 ALMGK----VNYMGGSGKGQFAKLA--NQITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 201 ~~~g~----~~~~g~~g~a~~~kl~--~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
.++|. ++.+. .....-..+. ...+..+...++.-.+......|.+++.+
T Consensus 168 ~~iG~~ragv~~tt-f~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~A 222 (335)
T PRK13403 168 KGVGCTRAGVIETT-FQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIA 222 (335)
T ss_pred HHcCCCceeEEecc-hHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 88876 33221 1111111111 12334445555566666788889888754
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=107.20 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=89.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.|...|++|++||++++....+ .....++++++.++|+|++|+|...++..++..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~--- 218 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDK--- 218 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhH---
Confidence 3689999999999999999999999999999987543221 334568999999999999999888877777753
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
++.+.++++.++|+++.|..-....+.+.+....+
T Consensus 219 ~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 219 AMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred HHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCe
Confidence 66778889999999999988888888888875433
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-09 Score=90.70 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=131.4
Q ss_pred CCeEEEEccChh--------------------hHHHHHHHHHCCCeEEEEeCCccc-----chhHHhcCCcccCCHHHhh
Q 018694 49 NTRIGWIGTGVM--------------------GRSMCAHLLNAGYTVTVFNRTLSK-----AQPLLDIGAHLADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~m--------------------G~~ia~~L~~~g~~V~~~dr~~~~-----~~~~~~~g~~~~~~~~~~~ 103 (351)
||||+|.|+|+. |..||-.++.+||+|++.+.|.+. .+...+.|+.++++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 589999999987 788999999999999999887554 3445556999999999999
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcC--CCcEE---eccCCCCchhh
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSK--NCSAI---DAPVSGGDRGA 177 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~--~~~~v---~~pv~~~~~~~ 177 (351)
...++.++.+|-...+-.+.+ .+.+++.++.+|.+.++.+|.. -..++..++.+ .+-+- .+.+.|.+..
T Consensus 81 ~~~Ei~VLFTPFGk~T~~Iar----ei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h- 155 (340)
T COG4007 81 EHGEIHVLFTPFGKATFGIAR----EILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH- 155 (340)
T ss_pred hcceEEEEecccchhhHHHHH----HHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC-
Confidence 999999999988888888998 9999999999999999976643 23455555432 22221 2233333322
Q ss_pred ccCceeEEec----C----CHHHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH
Q 018694 178 KTGTLAIFAG----G----DESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVE 248 (351)
Q Consensus 178 ~~g~~~~~~~----g----~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~ 248 (351)
+. .++.+ | .++..+++.++.+..|+..|+-+..--..+.-....+......++.+-+.++. -.|-+.+
T Consensus 156 --~~-yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~e 232 (340)
T COG4007 156 --GH-YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKE 232 (340)
T ss_pred --ce-EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 22 23332 1 67888999999999999433333333333333344444445555556555544 3555544
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-11 Score=100.13 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=88.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.+|..+|+.+..-|.+|++|||+..........+. ...++++++.++|+|++++|-..+.+.++..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~--- 111 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINA--- 111 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH---
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeeee---
Confidence 478999999999999999999999999999999765543445455 4569999999999999999877777776664
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 112 ~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 112 EFLAKMKPGAVLVNVARGELVDEDALLDALESGKI 146 (178)
T ss_dssp HHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSE
T ss_pred eeeeccccceEEEeccchhhhhhhHHHHHHhhccC
Confidence 55567889999999999988888889988875433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=106.50 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=91.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.|...|++|.+|||++... .....+.. ..++++++.++|+|++|+|...+++.++..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--- 224 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE--- 224 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH---
Confidence 4799999999999999999999999999999986432 22233444 358999999999999999988889888853
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+....++++.++|+++.+.....+.+.+.+.+..
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~ 258 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGW 258 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCC
Confidence 5667789999999999998888889999887543
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-10 Score=95.22 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=84.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CC----cccCCHHHhhcCCCEEEEecCChhH-HHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GA----HLADSPHSLASQSDVVFSIVGYPSD-VRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~~~DiIi~~vp~~~~-~~~v 122 (351)
++|+|||+|.||..++..|.+.| ++|++++|++++.+.+.+. +. ....+.++.+.++|+||+|+|.+.. .+.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 68999999999999999999986 7899999998887776554 32 2345667778899999999976654 3332
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.. . ...+.++++++|+++..+.+ .+.+.+.+.|+.++++
T Consensus 100 ~~----~-~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 100 PL----P-PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred CC----C-HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 22 1 12357899999998874433 7777777778888765
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=97.73 Aligned_cols=188 Identities=15% Similarity=0.183 Sum_probs=127.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c------------------CCcccCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I------------------GAHLADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~------------------g~~~~~~~ 99 (351)
+..|+|||+|.||+.||+--+.+|++|+++|++++.+.+..+ + .+..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 467999999999999999999999999999999876544322 1 14557788
Q ss_pred HHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEec-cCCCCc
Q 018694 100 HSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDA-PVSGGD 174 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~-pv~~~~ 174 (351)
++++.++|+||.++....+++.-++. ++.....+.+++. ..+++.. ..++.....++ |.+|..- |++
T Consensus 91 ~~~v~dadliiEAivEn~diK~~lF~---~l~~~ak~~~il~-tNTSSl~-lt~ia~~~~~~srf~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 91 SDAVSDADLIIEAIVENLDIKRKLFK---DLDKIAKSSTILA-TNTSSLS-LTDIASATQRPSRFAGLHFFNPVPVM--- 162 (298)
T ss_pred HHhhhhhHHHHHHHHHhHHHHHHHHH---HHHhhcccceEEe-eccccee-HHHHHhhccChhhhceeeccCCchhH---
Confidence 88899999999998777777765552 3433344444444 3333232 23444444322 4555432 444
Q ss_pred hhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 175 RGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 175 ~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.++.++.+ +++++..+..+.+.+|+ .+.+.+ +|. +++. ..+-.+.|++.+.++..-+.++
T Consensus 163 ------KLvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtpGF-----IVNR----lLiPyl~ea~r~yerGdAskeD 227 (298)
T KOG2304|consen 163 ------KLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPGF-----IVNR----LLIPYLMEAIRMYERGDASKED 227 (298)
T ss_pred ------HHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCch-----hhhH----HHHHHHHHHHHHHHhcCCcHhh
Confidence 22333333 67888999999999999 555555 444 1222 2345578999999999999999
Q ss_pred HHHHHhcCCC
Q 018694 250 FLNAISTGAA 259 (351)
Q Consensus 250 ~~~~~~~~~~ 259 (351)
+...++.+.+
T Consensus 228 IDtaMklGag 237 (298)
T KOG2304|consen 228 IDTAMKLGAG 237 (298)
T ss_pred HHHHHhccCC
Confidence 8888877653
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=91.36 Aligned_cols=241 Identities=18% Similarity=0.195 Sum_probs=167.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~D 107 (351)
|+||+-||+|.+|..-...++-. ..+|+++|.+..++..... +++.+.++.+..+.++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 58999999999999876665432 2379999999877644322 24667889999999999
Q ss_pred EEEEecCChh--------------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHh--cCCCcE--Eecc
Q 018694 108 VVFSIVGYPS--------------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAAS--SKNCSA--IDAP 169 (351)
Q Consensus 108 iIi~~vp~~~--------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~--~~~~~~--v~~p 169 (351)
+||+.|-.|. -.+++.+ .+.+.-...++++.-++......+.+...+. .+|+.| ++.|
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar----~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnp 156 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAAR----MIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNP 156 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHH----HHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccCh
Confidence 9999994332 2345555 5556667888999999998888888888775 245544 4555
Q ss_pred CCC---CchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-----eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 170 VSG---GDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-----VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVY 239 (351)
Q Consensus 170 v~~---~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-----~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l 239 (351)
.+- ..+..-...=-++.|| .++-.+.++.+..-... -+.+...=++..-|++.|++.+--+..++.+.++
T Consensus 157 eflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~sal 236 (481)
T KOG2666|consen 157 EFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSAL 236 (481)
T ss_pred HHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 442 2222111111344555 55655666555443332 3345566788889999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCC
Q 018694 240 AHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLA 302 (351)
Q Consensus 240 a~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~ 302 (351)
|++-|.+..++...+..... .++.+++. .-||.-.+++||+-.++..++..|+|
T Consensus 237 ceatgadv~eva~avg~d~r-------ig~kfl~a--svgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 237 CEATGADVSEVAYAVGTDSR-------IGSKFLNA--SVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred HHhcCCCHHHHHHHhccccc-------ccHHHhhc--ccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 99999999999888765542 12233322 24666678899999899999998876
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-10 Score=102.60 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=87.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.++|||||+|+||..+|+.+..-|++|.+|||+... .+.. ...++++++.++|+|++++|...+++.++..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~-- 193 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINS-- 193 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCH--
Confidence 478999999999999999988889999999997432 1232 2468999999999999999988988888763
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~ 161 (351)
+....++++.++|+++.+.....+.+.+.+.+.
T Consensus 194 -~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 194 -KMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred -HHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 566778899999999999998888999988754
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-10 Score=104.15 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=87.0
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+||||||+|.||..+|+.|+ ..|++|++||+++... . ..++....++++++.++|+|++|+|.....+.++..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~-- 220 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA-- 220 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH--
Confidence 479999999999999999994 4578999999886432 1 223455568999999999999999887777766542
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.++++.++|+++.+.......+.+.+.+..+
T Consensus 221 -~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 221 -DLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred -HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence 45567889999999999988888899888875443
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-10 Score=102.13 Aligned_cols=110 Identities=17% Similarity=0.299 Sum_probs=90.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|+||..+|+.|...|++|.+|+++......+.. .....++++++.++|+|++++|...+++.++..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~--- 210 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIINQ--- 210 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH---
Confidence 479999999999999999999999999999987654322111 112457899999999999999999999988863
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 211 ~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i 245 (312)
T PRK15469 211 QLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV 245 (312)
T ss_pred HHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe
Confidence 56677899999999999988888889888876544
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=101.73 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=109.8
Q ss_pred hhhhhccccccccchhhHHHHHHHHhhh----------ccccCCCCCC-CCCCCeEEEEccChhhHHHHHHHHHCCCeEE
Q 018694 8 LLVLRSRTAHSYSLSVSSLVTLLLRRRS----------MATVASTDPV-CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVT 76 (351)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~ 76 (351)
++|.+..+..+.++.+..+..-+...|. ..|++..... .-.-+++||||+|++|+.+|+.+..-|++|.
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~ 169 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI 169 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 4566666667777766655444433331 2233211111 1124799999999999999999999999999
Q ss_pred EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH
Q 018694 77 VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA 156 (351)
Q Consensus 77 ~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~ 156 (351)
+||+...+- .....+.....++++++.++|+|.+.+|...+++.++.. +....++++.++|+++.|..-....+.+
T Consensus 170 ~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~---~~~a~MK~gailIN~aRG~vVde~aL~~ 245 (324)
T COG0111 170 GYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA---EELAKMKPGAILINAARGGVVDEDALLA 245 (324)
T ss_pred EECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH---HHHhhCCCCeEEEECCCcceecHHHHHH
Confidence 999943221 122235666789999999999999999999999988875 5566788999999999998888888999
Q ss_pred HHhcC
Q 018694 157 AASSK 161 (351)
Q Consensus 157 ~~~~~ 161 (351)
.+.+.
T Consensus 246 AL~~G 250 (324)
T COG0111 246 ALDSG 250 (324)
T ss_pred HHHcC
Confidence 88754
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-09 Score=89.71 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. |....++ +++. .++|+++.|.....-.++.+.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~~-- 104 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTIP-- 104 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHHH--
Confidence 3789999999999999999999999999999998888777665 6555444 4444 479999988644434444444
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++ +.++|+...|+.. +..+-.+.+.++|+.|++
T Consensus 105 --~l-----~~~~v~~~AN~~~-~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 105 --QL-----KAKAIAGAANNQL-ADPRHGQMLHERGILYAP 137 (200)
T ss_pred --Hc-----CCCEEEECCcCcc-CCHhHHHHHHHCCCEEeC
Confidence 33 3568999888733 324666777788999986
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=107.02 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=92.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.|...|++|.+||+... .+...+.|+...+++++++.++|+|++|+|...+++.++..
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--- 213 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGA--- 213 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH---
Confidence 37899999999999999999999999999998632 22333446665678999999999999999988888888853
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 248 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHV 248 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCe
Confidence 55667889999999999988888899998876544
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=98.95 Aligned_cols=141 Identities=26% Similarity=0.271 Sum_probs=98.9
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
.+.+.+++++|+..++.+.+... ... ...+++.|+|+|.+|.+++..|.+.|++|++++|++++.+.+.+
T Consensus 89 ~~~g~l~g~NTD~~G~~~~l~~~------~~~----~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 89 LEDGKLVGYNTDGIGLVSDLERL------IPL----RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred eeCCEEEEEcCCHHHHHHHHHhc------CCC----ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788999999999999997531 110 11257999999999999999999999999999999888766654
Q ss_pred c----CCcccCCHHH-hhcCCCEEEEecCChh--HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 91 I----GAHLADSPHS-LASQSDVVFSIVGYPS--DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 91 ~----g~~~~~~~~~-~~~~~DiIi~~vp~~~--~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
. +.....+.++ ...++|+||.|+|... ...+... -...+.++.+++|++...+.+ .+.+..++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~-----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~ 231 (270)
T TIGR00507 159 RFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPV-----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT 231 (270)
T ss_pred HHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCC-----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence 3 2111223333 2357999999996542 1211110 112356888999999875555 57777777888
Q ss_pred cEEec
Q 018694 164 SAIDA 168 (351)
Q Consensus 164 ~~v~~ 168 (351)
.++++
T Consensus 232 ~~vdG 236 (270)
T TIGR00507 232 KTIDG 236 (270)
T ss_pred eeeCC
Confidence 88876
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=96.33 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEE-EEeCCcccchhHHhc-C-CcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVT-VFNRTLSKAQPLLDI-G-AHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~-~~dr~~~~~~~~~~~-g-~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
++||||||+|.||..++..|.+. ++++. +||+++++.+.+.++ | ...+++.++++.++|+|++|+|... ..++.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~-h~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV-LRAIV 84 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH-HHHHH
Confidence 48999999999999999999863 67765 789998887777655 4 3567889999999999999996554 45454
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
. .. +..++.++..+.+.....+++.+...+.+..+
T Consensus 85 ~----~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 85 E----PV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred H----HH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 4 33 34566566566554445677877777777665
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=104.58 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=91.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.+...|++|.+||++... +.....|+... ++++++.++|+|++|+|...+++.++..
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~--- 214 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGA--- 214 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH---
Confidence 478999999999999999999999999999986432 23334466655 8999999999999999999899888853
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+....++++.++|+++.+..-..+.+.+.+.+..
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 248 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGIIDEAALAEALKSGK 248 (526)
T ss_pred HHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCC
Confidence 6677889999999999998888889999887543
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-09 Score=99.64 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=87.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChh----HHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPS----DVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~----~~~~v~~ 124 (351)
.++|||||+|+||..+++.+...|++|.+||+..... .+.....++++++.+||+|++++|-.. .+..++.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 3789999999999999999999999999999854321 122234589999999999999998654 4666664
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC--cEEec
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC--SAIDA 168 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~--~~v~~ 168 (351)
. +....++++.++|+++.+..-..+.+.+.+.+... ..+|.
T Consensus 191 ~---~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV 233 (381)
T PRK00257 191 E---AFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDV 233 (381)
T ss_pred H---HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence 3 45667889999999999988888889888865432 34554
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=87.26 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=67.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|+|||+|..|.+.|.+|.++|++|++..|... ..+...+.|+.+. +.+|+++.+|+|++.+ ++..-.+++..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~-PD~~q~~vy~~--- 79 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLL-PDEVQPEVYEE--- 79 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S--HHHHHHHHHH---
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeC-ChHHHHHHHHH---
Confidence 6899999999999999999999999999988766 5667777788765 7899999999999999 66667777732
Q ss_pred CcccCCCCCcEEEe
Q 018694 129 GALSGLRPGGIIVD 142 (351)
Q Consensus 129 ~i~~~l~~~~~ii~ 142 (351)
++.+.+.++++++-
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 88889999988773
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-09 Score=95.14 Aligned_cols=108 Identities=24% Similarity=0.354 Sum_probs=78.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCe-EEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYT-VTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||||+|||+|.||..++..+.+. +++ +.++|+++++.+.+.+. +...+++.++++.++|+|++|+ ++....+...
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a-~~~~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECA-SVNAVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcC-ChHHHHHHHH
Confidence 58999999999999999999876 355 55789999888777654 6667789999888999999999 5565666665
Q ss_pred CCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCCCc
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~~~ 164 (351)
.+. ..++.++.++.+ .....+++.+..++.+..
T Consensus 80 ----~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 80 ----KSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred ----HHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 443 234445545442 345556777777666654
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-09 Score=96.56 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=88.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH------------HhcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL------------LDIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~------------~~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
-++|||||+|.||..+|+.|...|.+|++|+|+....... ...+. ...++++++.++|+|++++|..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCC
Confidence 4799999999999999999999999999999974321110 01112 3468999999999999999988
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..++.++.. +....++++.++|+++.+..-..+.+.+.+....+
T Consensus 238 ~~T~~li~~---~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 238 KETAGIVND---EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred hHhhcccCH---HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 888888864 56677899999999999988788889888875433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=94.57 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-++|||||+|++|..+|+.+..-|.+|..||+..... ..+.. ..++++++.+||+|++++|-..+++.++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~-- 216 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAY-- 216 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCH--
Confidence 34789999999999999999998899999999864221 12333 458999999999999999989998888875
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-EEec
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS-AIDA 168 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~-~v~~ 168 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+. .+|.
T Consensus 217 -~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV 257 (311)
T PRK08410 217 -KELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDV 257 (311)
T ss_pred -HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEec
Confidence 566778999999999999888888999988754433 3443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-09 Score=96.94 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH----HHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD----VRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~----~~~v~~ 124 (351)
.++|||||+|+||+.+|+.|..-|++|.+||+..... ... ....++++++.+||+|++++|-... ...++.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 3789999999999999999999999999999753211 111 1246899999999999999975543 555554
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC--cEEec
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC--SAIDA 168 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~--~~v~~ 168 (351)
. +....+++++++|+++.|..-..+.+.+.+.+... ..+|.
T Consensus 191 ~---~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV 233 (378)
T PRK15438 191 E---KLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDV 233 (378)
T ss_pred H---HHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEec
Confidence 2 45567889999999999988888888888865422 34554
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-09 Score=99.42 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=92.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~ 88 (351)
-..+++++|| .++.+...++.+. ...+|+|||+|.||..++..+.. ...+|.+|+|++++.+.+
T Consensus 100 d~~~lT~~RTaa~sala~~~La~~-------------~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 100 DGTELTARRTAAASALAASYLARK-------------DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred cCcchhcchhHHHHHHHHHHhCCC-------------CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 6677889999 5555555554321 12579999999999999986654 346899999999998887
Q ss_pred Hhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 89 LDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 89 ~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
.+. | +..+.++++++.++|+|+.|++.. ..++. . ..+.+++ +|++....+...+++...+..++
T Consensus 167 a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pvl~----~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a 236 (314)
T PRK06141 167 AAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPLVR----G--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRA 236 (314)
T ss_pred HHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCEec----H--HHcCCCC-EEEeeCCCCcccccCCHHHHhcC
Confidence 665 4 556678899999999998888543 33332 1 3456777 45555554555566665555555
Q ss_pred CcEEec
Q 018694 163 CSAIDA 168 (351)
Q Consensus 163 ~~~v~~ 168 (351)
..|+|.
T Consensus 237 ~~~vD~ 242 (314)
T PRK06141 237 SVYVDT 242 (314)
T ss_pred cEEEcC
Confidence 566664
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-07 Score=78.12 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=84.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|||+|||. |.||..++..|.++|++|+ +.++|+||+|+ +...+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilav-Pv~~~~~~i~---- 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSV-PIDAALNYIE---- 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeC-CHHHHHHHHH----
Confidence 68999988 9999999999999999986 25899999999 7777787887
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhcc-CceeEEecC--CHHHHHHHHHHHHhhC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKT-GTLAIFAGG--DESVVQKLNPLFALMG 204 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~-g~~~~~~~g--~~~~~~~v~~ll~~~g 204 (351)
++. .+++|+++..... .+. ...|+.. |.+|....... ....+++.. +++..+.++++++ |
T Consensus 50 ~~~------~~v~Dv~SvK~~i----~~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G 113 (197)
T PRK06444 50 SYD------NNFVEISSVKWPF----KKY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--G 113 (197)
T ss_pred HhC------CeEEeccccCHHH----HHh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--C
Confidence 543 3789999875532 221 3468877 88884433211 122333332 5566778888888 5
Q ss_pred c-eEEcCCccHHHHH
Q 018694 205 K-VNYMGGSGKGQFA 218 (351)
Q Consensus 205 ~-~~~~g~~g~a~~~ 218 (351)
. ++.+.....-..+
T Consensus 114 ~~~~~~t~eeHD~~~ 128 (197)
T PRK06444 114 YHFVEMTADEHDLLM 128 (197)
T ss_pred CEEEEeCHHHHHHHH
Confidence 5 6666654444443
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-09 Score=95.70 Aligned_cols=108 Identities=23% Similarity=0.396 Sum_probs=90.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-+++||||.|.+|.++|+.+..-|.+|..|+|++. -+...+.+....+ +++++.++|+|.+.+|-..+...++..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--- 220 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINA--- 220 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH---
Confidence 47999999999999999999977889999999865 2222222355554 999999999999999999999999875
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~ 161 (351)
+....++++.++|+++.|..-..+.+.+.+.+.
T Consensus 221 ~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 221 EELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 566788999999999999888888999988754
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=86.99 Aligned_cols=196 Identities=19% Similarity=0.158 Sum_probs=131.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchh-----------HHhcC--------------CcccCCHHHhhc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-----------LLDIG--------------AHLADSPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~-----------~~~~g--------------~~~~~~~~~~~~ 104 (351)
-||+|+|.|.+|+..|..|+..|++|.+||..+..++. +.++| +..+++++|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 58999999999999999999999999999998764322 11222 456788999999
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
.+=.|-.|+|..-+++.-+. ...+.+...++|+..|++.--. ..+.+-+..+.-..+.-|+.+..-. .++.
T Consensus 84 ~Ai~iQEcvpE~L~lkk~ly----~qlD~i~d~~tIlaSSTSt~mp-S~~s~gL~~k~q~lvaHPvNPPyfi----PLvE 154 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQLY----KQLDEIADPTTILASSTSTFMP-SKFSAGLINKEQCLVAHPVNPPYFI----PLVE 154 (313)
T ss_pred hhhhHHhhchHhhHHHHHHH----HHHHHhcCCceEEeccccccCh-HHHhhhhhhhhheeEecCCCCCccc----chhe
Confidence 99899999988888876666 4444444555666655543222 2344444333334555566544221 2233
Q ss_pred EecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 185 FAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 185 ~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
++.. .++..++.+.+.+.+|. .+.....-.+.. +.....+.++|.+.+....+++..+...++..+.+.
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~-------lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~ 227 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFA-------LNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGP 227 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccce-------eccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCc
Confidence 3332 78889999999999997 443332111111 112244668899999999999998988888887754
Q ss_pred c
Q 018694 261 S 261 (351)
Q Consensus 261 s 261 (351)
.
T Consensus 228 R 228 (313)
T KOG2305|consen 228 R 228 (313)
T ss_pred c
Confidence 3
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=92.20 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+++||||+|++|..+|+.+. .-|.+|.+|++.... +.....+... .++++++++||+|++++|....++.++..
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~-- 220 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA-- 220 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--
Confidence 378999999999999999997 678899999987422 1122234443 58999999999999999999999888864
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 221 -~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 221 -EQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred -HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 56677899999999999988888899998875433
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=96.96 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=90.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|++|..+|+.+..-|.+|.+||+++... ..+.....++++++++||+|++++|...+++.++..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--- 223 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--- 223 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCH---
Confidence 4789999999999999999999999999999864221 123445568999999999999999988989888864
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 224 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 224 EELALMKPGAILINASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred HHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc
Confidence 56677899999999999988888899998876544
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-09 Score=94.25 Aligned_cols=142 Identities=21% Similarity=0.225 Sum_probs=97.0
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.+.+.|++|+||..++.+.+.... .. ....||.|||+|.+|.+++..|...|. +|+++||+.++.+.+
T Consensus 98 ~~~~g~l~G~NTD~~G~~~~l~~~~-----~~-----~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l 167 (284)
T PRK12549 98 VFRDGRRIGHNTDWSGFAESFRRGL-----PD-----ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL 167 (284)
T ss_pred EecCCEEEEEcCCHHHHHHHHHhhc-----cC-----ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 3467889999999999999986311 01 012579999999999999999999998 799999999988877
Q ss_pred Hhc-----C-Ccc--cCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHh
Q 018694 89 LDI-----G-AHL--ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAAS 159 (351)
Q Consensus 89 ~~~-----g-~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~ 159 (351)
.+. . ... ..+..+.+.++|+||.|+|-...-..-. .+. ..+.++.+++|+.-....+ .+.+..+
T Consensus 168 a~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~-----~~~~~~l~~~~~v~DivY~P~~T--~ll~~A~ 240 (284)
T PRK12549 168 ADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGL-----PLPAELLRPGLWVADIVYFPLET--ELLRAAR 240 (284)
T ss_pred HHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCC-----CCCHHHcCCCcEEEEeeeCCCCC--HHHHHHH
Confidence 653 1 111 2334456678999999996442110000 111 2356778899988653332 4555556
Q ss_pred cCCCcEEec
Q 018694 160 SKNCSAIDA 168 (351)
Q Consensus 160 ~~~~~~v~~ 168 (351)
+.|+..+++
T Consensus 241 ~~G~~~~~G 249 (284)
T PRK12549 241 ALGCRTLDG 249 (284)
T ss_pred HCCCeEecC
Confidence 678777765
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=91.42 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=82.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.||+|||+|.+|..+++.|...|.+|++++|++++.+.+.+.|.... .++++.+.++|+||.|+|.....++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~------ 225 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTAD------ 225 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHH------
Confidence 68999999999999999999999999999999877666655554432 3556778899999999965422222
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
..+.+.++.++||+++..-++ .+ +..++.|+..+-+|..++
T Consensus 226 --~l~~~k~~aliIDlas~Pg~t--df-~~Ak~~G~~a~~~~glPg 266 (287)
T TIGR02853 226 --VLSKLPKHAVIIDLASKPGGT--DF-EYAKKRGIKALLAPGLPG 266 (287)
T ss_pred --HHhcCCCCeEEEEeCcCCCCC--CH-HHHHHCCCEEEEeCCCCc
Confidence 333456889999999863332 22 344566877776665544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-08 Score=90.91 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=87.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|++|..+|+.+..-|.+|.+|++.... . ... ..++++++.++|+|++++|-..+++.++..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~--- 217 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGA--- 217 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCH---
Confidence 368999999999999999999889999999986321 1 122 347999999999999999989999888875
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 56677899999999999988888889988876443
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=92.11 Aligned_cols=143 Identities=24% Similarity=0.251 Sum_probs=97.0
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHH
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~ 89 (351)
.+.+.|++|+|+..++.+.+...... .....++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.
T Consensus 94 ~~~g~l~G~NTD~~G~~~~l~~~~~~---------~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 94 LEDGRLIGDNTDGIGFVRALEERLGV---------DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred eeCCEEEEEcccHHHHHHHHHhccCC---------CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 45788999999999999988632100 112257999999999999999999999 68999999998887776
Q ss_pred hcC-----CcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 90 DIG-----AHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 90 ~~g-----~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+.. +....+..+.+.++|+||.|+|-+..-. .... -....+.++.+++|+.-. |..+ .+.+..++.|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~----~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~ 238 (278)
T PRK00258 165 KLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPP----LPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGA 238 (278)
T ss_pred HHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCC----CCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcC
Confidence 541 1111133455678999999996543210 0000 111235678899999875 3322 45555566677
Q ss_pred cEEec
Q 018694 164 SAIDA 168 (351)
Q Consensus 164 ~~v~~ 168 (351)
.++++
T Consensus 239 ~~~~G 243 (278)
T PRK00258 239 RTIDG 243 (278)
T ss_pred eecCC
Confidence 77655
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=92.16 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=87.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.+|..+|+.+..-|.+|..|++.... .. .. ...++++++.++|+|++++|-...++.++..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~--- 217 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINA--- 217 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCH---
Confidence 479999999999999999999889999999986421 11 11 1458999999999999999988889888875
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 218 ~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGKI 252 (314)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 56677899999999999988888889998876443
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-08 Score=89.47 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=92.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-+||||+|+|.+|..+|++|..-|..+..+.|++...+...+.+.. ..+.++.+.++|+|++|+|-...+..++.+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk-- 237 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINK-- 237 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--
Confidence 34799999999999999999999886677778887766666555544 458899999999999999999999999986
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
+...+++++.++|+++.|..-..+.+.+.+.+
T Consensus 238 -~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 238 -KFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred -HHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 77788999999999999988888888888864
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-08 Score=95.33 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=93.4
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
-++|.|+||+|+..++.+.+...- . . ...++++|+|+|.+|.+++..|.+.|++|++++|++++.+.+.+
T Consensus 304 ~~~g~l~G~NTD~~G~~~~l~~~~---~--~-----~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~ 373 (477)
T PRK09310 304 FRNGKIEGYNTDGEGLFSLLKQKN---I--P-----LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS 373 (477)
T ss_pred eeCCEEEEEecCHHHHHHHHHhcC---C--C-----cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468899999999999999884210 0 1 11268999999999999999999999999999999888777655
Q ss_pred c-CCcc--cCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 91 I-GAHL--ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 91 ~-g~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
. +... ..+..+ +.++|+||.|+|.+..+.. .+ . .+++|+....+.+ .+.+..++.|+..++
T Consensus 374 ~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~-------~l----~--~~v~D~~Y~P~~T--~ll~~A~~~G~~~~~ 437 (477)
T PRK09310 374 RCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPK-------AF----P--PCVVDINTLPKHS--PYTQYARSQGSSIIY 437 (477)
T ss_pred HhccceechhHhcc-cCCCCEEEEcCCCCCcchh-------HH----h--hhEEeccCCCCCC--HHHHHHHHCcCEEEC
Confidence 4 2111 112222 4689999999976653321 11 1 3899998875544 255666667877775
Q ss_pred c
Q 018694 168 A 168 (351)
Q Consensus 168 ~ 168 (351)
+
T Consensus 438 G 438 (477)
T PRK09310 438 G 438 (477)
T ss_pred c
Confidence 5
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-08 Score=91.77 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=87.6
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCccc-chhHH-hcC------------CcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSK-AQPLL-DIG------------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~-~~~~~-~~g------------~~~~~~~~~~~~~~DiIi~~v 113 (351)
-++|||||+|.+|..+|+.+. .-|.+|.+||++... .+.+. ..+ .....++++++.++|+|++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 478999999999999999985 668999999987532 11110 111 122458999999999999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
|-...++.++.. +....++++.++|+++.|..-....+.+.+.+..
T Consensus 245 Plt~~T~~lin~---~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~ 290 (386)
T PLN02306 245 VLDKTTYHLINK---ERLALMKKEAVLVNASRGPVIDEVALVEHLKANP 290 (386)
T ss_pred CCChhhhhhcCH---HHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 988899888875 5667889999999999998877888888887543
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=74.24 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=79.0
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeE-EEEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTV-TVFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V-~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~ 123 (351)
+||+|||+|.+|......+.+. ++++ .++|+++++.+.+.+. |+..+++.+++++ +.|+|++|+|+..+.+-+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 5899999999999999888876 3454 4789999888877554 8889999999987 7999999997777666555
Q ss_pred hCCCCCcccCCCCC-cEEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 124 LHPSSGALSGLRPG-GIIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 124 ~~~~~~i~~~l~~~-~~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
. -+. .| .++++-- ..+....+++.+...+.+..+
T Consensus 81 ~----~l~----~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 K----ALE----AGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp H----HHH----TTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred H----HHH----cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 4 222 23 3455421 123666777777776666543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=86.30 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=80.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.|++|||+|.+|..++..|...|.+|++++|++++.+.....|.... .+..+.+.++|+||.|+|.....++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l---- 228 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVL---- 228 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHH----
Confidence 68999999999999999999999999999999887666666665543 355677889999999996543333333
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..+.++.+|||++...-++ . + +.....|+..+-.+..
T Consensus 229 ----~~~~~g~vIIDla~~pggt-d-~-~~a~~~Gv~~~~~~~l 265 (296)
T PRK08306 229 ----SKMPPEALIIDLASKPGGT-D-F-EYAEKRGIKALLAPGL 265 (296)
T ss_pred ----HcCCCCcEEEEEccCCCCc-C-e-eehhhCCeEEEEECCC
Confidence 3456899999999863332 1 2 2334456666655444
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-06 Score=81.91 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=114.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCC------cccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT------LSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~------~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.++|+|||+|.+|.+.|.+|...|++|++--|. ....+.+.+.|..+ .+.++++..+|+|++.+|.. .-..+
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v 113 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDV 113 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHH
Confidence 378999999999999999999999999955443 33445555567765 67999999999999999666 45555
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEE-ec--C--CHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIF-AG--G--DES 191 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~-~~--g--~~~ 191 (351)
.. ++.+.+++++++. .+-|-.-+. ....+.+++.++ -+|-.+++.- ...|...++ +. . +..
T Consensus 114 ~~----~i~p~LK~Ga~L~-fsHGFni~~---~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~ 185 (487)
T PRK05225 114 VR----AVQPLMKQGAALG-YSHGFNIVE---VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGE 185 (487)
T ss_pred HH----HHHhhCCCCCEEE-ecCCceeee---CceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCch
Confidence 65 8889998888766 444422111 111233456554 3454443321 111221222 22 2 344
Q ss_pred HHHHHHHHHHhhCc----eEEcCCccHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHhc
Q 018694 192 VVQKLNPLFALMGK----VNYMGGSGKGQFAK-LANQITIATTMVGLVE-GMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 192 ~~~~v~~ll~~~g~----~~~~g~~g~a~~~k-l~~n~~~~~~~~~~~E-a~~la~~~Gi~~~~~~~~~~~ 256 (351)
+.+.+.....++|. ++.+. ........ +....+..+.++...+ .+....+.|.+++.++..+..
T Consensus 186 a~~~ala~a~~iG~~ragv~~tt-f~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~ 255 (487)
T PRK05225 186 GMAIAKAWAAATGGHRAGVLESS-FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQF 255 (487)
T ss_pred HHHHHHHHHHHhCCCccceeecc-hHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 66777777777775 33221 11111111 1112222223332223 333567789999888765433
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=73.68 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=74.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH-CCCeEE-EEeCCcc-cc----hhH---HhcCCcccCCHHHhhcCCCEEEEecCChhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN-AGYTVT-VFNRTLS-KA----QPL---LDIGAHLADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~-~g~~V~-~~dr~~~-~~----~~~---~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|||+|+|+ |.||+.+++.+.+ .++++. +++++++ .. ..+ ...|+.+.+++++++..+|++|-++ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 68999999 9999999999998 778854 6677762 11 111 1236788899999998999999999 8888
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
+.+.++ ... ..+..+|..+|+......+..+.+.+ .+.++-+|++
T Consensus 80 ~~~~~~----~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~-~~~vl~a~Nf 124 (124)
T PF01113_consen 80 VYDNLE----YAL---KHGVPLVIGTTGFSDEQIDELEELAK-KIPVLIAPNF 124 (124)
T ss_dssp HHHHHH----HHH---HHT-EEEEE-SSSHHHHHHHHHHHTT-TSEEEE-SSS
T ss_pred hHHHHH----HHH---hCCCCEEEECCCCCHHHHHHHHHHhc-cCCEEEeCCC
Confidence 877776 333 35777887888765443333333332 3667766664
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=88.54 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=84.5
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~ 88 (351)
-..+++.+|| .++.+...++.+. ...+++|||+|.+|...+..+.. ...+|.+|+|++++.+.+
T Consensus 103 d~~~lT~~RTaA~salaa~~La~~-------------~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~ 169 (325)
T TIGR02371 103 DGTYITDMRTGAAGGVAAKYLARK-------------DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKF 169 (325)
T ss_pred eCcchhhHHHHHHHHHHHHHhCCC-------------CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 6678889999 5556655555331 12579999999999998877764 334899999999998777
Q ss_pred Hhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.++ | +..+.+.++++.++|+|+.|+|... .++. ...+++|..|..+++-.|.
T Consensus 170 ~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~~~------~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 170 ALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PVVK------ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred HHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cEec------HHHcCCCCEEEecCCCCcc
Confidence 653 5 4567899999999999999995432 2222 1245789888888776553
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-07 Score=83.03 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=92.2
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~ 90 (351)
.++++++|+||..++.+.+....... . ....++.|||+|.+|.+++..|.+.|. +|++++|+.++.+.+.+
T Consensus 96 ~~g~l~G~NTD~~G~~~~l~~~~~~~---~-----~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 96 QNGIWKGDNTDWDGIAGALANIGKFE---P-----LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred CCCcEEEecCCHHHHHHHHHhhCCcc---c-----cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 46789999999999999986321000 0 012579999999999999999999997 69999999999888766
Q ss_pred c-C----CcccC---CHHHhhcCCCEEEEecCChhHHHHH-hhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 91 I-G----AHLAD---SPHSLASQSDVVFSIVGYPSDVRHV-LLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 91 ~-g----~~~~~---~~~~~~~~~DiIi~~vp~~~~~~~v-~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
. + +.... +..+.+.++|+||.|+|-....... +......+. ..+.++.+++|+.-....+ .+.+..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~ 245 (282)
T TIGR01809 168 LGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSA 245 (282)
T ss_pred HhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC--HHHHHHHH
Confidence 4 1 11122 2234456899999999754322111 110000000 1124567888887542222 44444455
Q ss_pred CCCcEEec
Q 018694 161 KNCSAIDA 168 (351)
Q Consensus 161 ~~~~~v~~ 168 (351)
.|+..+++
T Consensus 246 ~G~~~~~G 253 (282)
T TIGR01809 246 AGWRVISG 253 (282)
T ss_pred CCCEEECc
Confidence 66666654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=87.96 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=79.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcC---C-------cccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIG---A-------HLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g---~-------~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
||||.|||+|.+|+.+|..|+++| .+|++.||+.++.+++.... + .-.+.+.+++++.|+||.|.|+..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 689999999999999999999998 89999999999888886652 1 112345577888999999996555
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+++ ..+..+..++|++...+.. .++.+.+.+.|+.++
T Consensus 81 ~~-~i~k-------a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v 120 (389)
T COG1748 81 DL-TILK-------ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV 120 (389)
T ss_pred hH-HHHH-------HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence 44 4554 2234667788877765543 556666555565544
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8e-07 Score=76.27 Aligned_cols=104 Identities=21% Similarity=0.356 Sum_probs=75.1
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCe-EEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYT-VTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|+|++||||.+|..+...+.+. +++ |.+|||+.++++.+.+. +.+..+++++.+...|+++.|. .++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~~- 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYVP- 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHhH-
Confidence 5899999999999999987643 354 77999999988776554 5556689999999999999999 8888887777
Q ss_pred CCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHh
Q 018694 126 PSSGALSGLRPGGIIVDMTTS-EPSLASELSAAAS 159 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~ 159 (351)
+++.. ..+-+|++.+.- .++..+++.+..+
T Consensus 79 ---~~L~~-g~d~iV~SVGALad~~l~erl~~lak 109 (255)
T COG1712 79 ---KILKA-GIDVIVMSVGALADEGLRERLRELAK 109 (255)
T ss_pred ---HHHhc-CCCEEEEechhccChHHHHHHHHHHh
Confidence 55431 234456655542 3444444544444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=82.89 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=62.5
Q ss_pred CCeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-++|+|||.| .||..|+..|.++|++|++|++.. .++.+.++++|+||+|++++..+...+
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~~~v~~~~---- 220 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRPRLIDADW---- 220 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCChhcccHhh----
Confidence 3689999996 999999999999999999998753 268888899999999998877666544
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+|+++||++..
T Consensus 221 ------ik~GaiVIDvgin 233 (301)
T PRK14194 221 ------LKPGAVVIDVGIN 233 (301)
T ss_pred ------ccCCcEEEEeccc
Confidence 4689999998843
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=82.63 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=92.1
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCc---ccc
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTL---SKA 85 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~---~~~ 85 (351)
+.++|.+++++||..++.+.+..... . ...+++.|+|+|.+|.+++..|++.|.. |++++|++ ++.
T Consensus 97 ~~~~g~l~G~NTD~~G~~~~l~~~~~-----~-----~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a 166 (289)
T PRK12548 97 VNDDGKLTGHITDGLGFVRNLREHGV-----D-----VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERA 166 (289)
T ss_pred EeECCEEEEEecCHHHHHHHHHhcCC-----C-----cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHH
Confidence 34678899999999999998863211 0 1125789999999999999999999986 99999996 555
Q ss_pred hhHHhc----C--Ccc--c--C---CHHHhhcCCCEEEEecCChhHHH-HHhhCCCCCc--ccCCCCCcEEEecCCCChh
Q 018694 86 QPLLDI----G--AHL--A--D---SPHSLASQSDVVFSIVGYPSDVR-HVLLHPSSGA--LSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 86 ~~~~~~----g--~~~--~--~---~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~~i--~~~l~~~~~ii~~s~~~~~ 149 (351)
+.+.+. + ... . + +.++.+..+|+||.|+|-...-. +.. -+ ...+.++.+++|+.-....
T Consensus 167 ~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~-----~~~~~~~l~~~~~v~D~vY~P~~ 241 (289)
T PRK12548 167 EQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGET-----NIKDTSVFRKDLVVADTVYNPKK 241 (289)
T ss_pred HHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCC-----CCCcHHhcCCCCEEEEecCCCCC
Confidence 554332 1 111 1 1 12234457899999996543210 000 11 1235677889998865333
Q ss_pred HHHHHHHHHhcCCCcEEec
Q 018694 150 LASELSAAASSKNCSAIDA 168 (351)
Q Consensus 150 ~~~~l~~~~~~~~~~~v~~ 168 (351)
+ .+.+..++.|+..+++
T Consensus 242 T--~ll~~A~~~G~~~~~G 258 (289)
T PRK12548 242 T--KLLEDAEAAGCKTVGG 258 (289)
T ss_pred C--HHHHHHHHCCCeeeCc
Confidence 2 4555555667777665
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-07 Score=85.38 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=84.6
Q ss_pred hhhhhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCccc
Q 018694 7 LLLVLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSK 84 (351)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~ 84 (351)
..++...++++++||+..+........ +. ...+++|||+|.+|...+..|.. .+. +|++|+|++++
T Consensus 99 ~ai~~d~~~lT~~RTaa~~~laa~~la---~~---------~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~ 166 (326)
T TIGR02992 99 QALLLDNGYLTDVRTAAAGAVAARHLA---RE---------DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK 166 (326)
T ss_pred eEEEcCCchHHHHHHHHHHHHHHHHhC---CC---------CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH
Confidence 344457788999999777766555322 11 12579999999999999999974 564 69999999999
Q ss_pred chhHHhc-----CCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 85 AQPLLDI-----GAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 85 ~~~~~~~-----g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.+.+. |+. ..++.++++.++|+|+.|+|... .++. ...+++++.+..+..-
T Consensus 167 a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p~i~------~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 167 AEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---PILH------AEWLEPGQHVTAMGSD 226 (326)
T ss_pred HHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---cEec------HHHcCCCcEEEeeCCC
Confidence 8877653 443 36788889999999999995432 2222 1245678777766643
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=77.86 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC---Ce-EEEEeCCcccchhHHhcCCcccCCHHHh-hcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG---YT-VTVFNRTLSKAQPLLDIGAHLADSPHSL-ASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g---~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+||+|||||+||..++..|.+.+ ++ +.+++|++++.+.+... ...+.+++++ ...+|+|+.|. .+..+++..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A-~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAA-GQQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECC-CHHHHHHHH
Confidence 589999999999999999987542 45 44678888777777654 7788899996 57899999999 888888777
Q ss_pred hCCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCC
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKN 162 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~ 162 (351)
. .++ ..+.-++-+|.+ .+...+++.+...+.+
T Consensus 80 ~----~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 80 E----GCL---TAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred H----HHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 7 554 345444444433 3344555555555433
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=81.30 Aligned_cols=146 Identities=23% Similarity=0.242 Sum_probs=98.5
Q ss_pred hhh-ccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchh
Q 018694 10 VLR-SRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQP 87 (351)
Q Consensus 10 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~ 87 (351)
+.+ .|.+++|+||..++...+.....-...+ ..++.|+|+|..+.+++..|++.|. +|++++|+.++.++
T Consensus 94 ~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~--------~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 94 VREDDGKLRGYNTDGIGFLRALKEFGLPVDVT--------GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEE 165 (283)
T ss_pred EEccCCEEEEEcCCHHHHHHHHHhcCCCcccC--------CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 445 3899999999999988887753221111 2579999999999999999999995 79999999999888
Q ss_pred HHhc----CCc-ccCCHHHh--hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 88 LLDI----GAH-LADSPHSL--ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 88 ~~~~----g~~-~~~~~~~~--~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
+.+. +.. ......+. ..++|+||-|||-...-.. -..+. . ...+.+..++.|+--....+ .+.+..++
T Consensus 166 La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~-~~~~~-~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~ 240 (283)
T COG0169 166 LADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPE-GDSPV-P-AELLPKGAIVYDVVYNPLET--PLLREARA 240 (283)
T ss_pred HHHHhhhcccccccccccccccccccCEEEECCCCCCCCCC-CCCCC-c-HHhcCcCCEEEEeccCCCCC--HHHHHHHH
Confidence 8665 211 11122221 1258999999976554432 00000 1 23456888999988763333 45556666
Q ss_pred CCCcEEec
Q 018694 161 KNCSAIDA 168 (351)
Q Consensus 161 ~~~~~v~~ 168 (351)
.|+.++++
T Consensus 241 ~G~~~idG 248 (283)
T COG0169 241 QGAKTIDG 248 (283)
T ss_pred cCCeEECc
Confidence 77777765
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-07 Score=81.16 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=92.5
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcc---cc
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLS---KA 85 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~---~~ 85 (351)
+.+++.+++|+||..++.+.+..... . ....++.|||+|..+++++..|...|. +|++++|+++ +.
T Consensus 95 ~~~~g~l~G~NTD~~Gf~~~l~~~~~-----~-----~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka 164 (288)
T PRK12749 95 VNDDGYLRGYNTDGTGHIRAIKESGF-----D-----IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA 164 (288)
T ss_pred EccCCEEEEEecCHHHHHHHHHhcCC-----C-----cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHH
Confidence 34678899999999999998863211 1 112579999999999999999998887 7999999953 66
Q ss_pred hhHHhc-C------CcccCCH------HHhhcCCCEEEEecCChhH--HHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 86 QPLLDI-G------AHLADSP------HSLASQSDVVFSIVGYPSD--VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 86 ~~~~~~-g------~~~~~~~------~~~~~~~DiIi~~vp~~~~--~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
+.+.+. + +.. .+. .+.+.++|+||.|+|-... ...... .-...+.++.+++|+.-....+
T Consensus 165 ~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~----~~~~~l~~~~~v~D~vY~P~~T 239 (288)
T PRK12749 165 LAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNGTKVGMKPLENESLV----NDISLLHPGLLVTECVYNPHMT 239 (288)
T ss_pred HHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCC----CcHHHCCCCCEEEEecCCCccC
Confidence 666543 1 111 122 2244578999999965432 111010 0012345778888887653322
Q ss_pred HHHHHHHHhcCCCcEEec
Q 018694 151 ASELSAAASSKNCSAIDA 168 (351)
Q Consensus 151 ~~~l~~~~~~~~~~~v~~ 168 (351)
.+.+..+.+|+..+++
T Consensus 240 --~ll~~A~~~G~~~~~G 255 (288)
T PRK12749 240 --KLLQQAQQAGCKTIDG 255 (288)
T ss_pred --HHHHHHHHCCCeEECC
Confidence 4555556678777765
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=77.92 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=74.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
||||+|+|+ |.||..++..+.+ .+++++ ++|+++++.......++..++++++++.++|+|+.|+ ++....+.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t-~p~~~~~~~~- 78 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFT-TPEATLENLE- 78 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECC-CHHHHHHHHH-
Confidence 489999998 9999999998876 467755 5788876655442335667788999888899999999 5444455554
Q ss_pred CCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 126 PSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
.. +..+..++..+++ +....+++.+ .. +++.++-+|++
T Consensus 79 ---~a---l~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~ 117 (257)
T PRK00048 79 ---FA---LEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNF 117 (257)
T ss_pred ---HH---HHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcc
Confidence 22 2345545544444 3444445555 32 45555555555
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.5e-07 Score=80.77 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=92.7
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~ 90 (351)
.++.++||+||..+|.+.+... .. . ...+++.|+|+|..|++++..|.+.|. +|++++|+.++.+.+.+
T Consensus 100 ~~g~l~G~NTD~~Gf~~~L~~~-~~----~-----~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 100 ATGHTTGHNTDVSGFGRGMEEG-LP----N-----AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCCcEEEEcCCHHHHHHHHHhc-Cc----C-----cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 4788999999999999998531 10 0 012579999999999999999999987 79999999998888765
Q ss_pred c-----CC---cccC--CHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 91 I-----GA---HLAD--SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 91 ~-----g~---~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
. +. ...+ +..+....+|+||-|+|-...-..-.. . .. ..+.++.+++|+.-....+ .+.+..++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~--~-~~-~~l~~~~~v~D~vY~P~~T--~ll~~A~~ 243 (283)
T PRK14027 170 VINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTA--F-DV-SCLTKDHWVGDVVYMPIET--ELLKAARA 243 (283)
T ss_pred HHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCC--C-CH-HHcCCCcEEEEcccCCCCC--HHHHHHHH
Confidence 3 11 1111 113345678999999964431100000 0 11 2345677888887653322 45555556
Q ss_pred CCCcEEec
Q 018694 161 KNCSAIDA 168 (351)
Q Consensus 161 ~~~~~v~~ 168 (351)
.|+.++++
T Consensus 244 ~G~~~~~G 251 (283)
T PRK14027 244 LGCETLDG 251 (283)
T ss_pred CCCEEEcc
Confidence 67777765
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-07 Score=83.70 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=84.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~~ 88 (351)
-..+++++|| .++.+...++.+. ...+++|||+|.+|...+..+.. .+. +|.+|+|++++.+.+
T Consensus 102 d~~~lT~~RTaa~sala~~~la~~-------------~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 168 (325)
T PRK08618 102 DGTYLTQIRTGALSGVATKYLARE-------------DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAF 168 (325)
T ss_pred ccchhhhhhHHHHHHHHHHHhcCC-------------CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHH
Confidence 6778899999 5556655555431 12579999999999999888754 344 799999999988777
Q ss_pred Hhc-----CC--cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 89 LDI-----GA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 89 ~~~-----g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
.+. ++ ..+.+.++++.++|+|+.|+|...- ++ . ..+++|+.|+.+.+-.|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p---~i-----~--~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 169 AQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP---VF-----S--EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred HHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc---ch-----H--HhcCCCcEEEecCCCCccc
Confidence 652 33 3467889999999999999965421 22 2 3457899998887765543
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-07 Score=83.66 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=83.4
Q ss_pred hhhhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CC-CeEEEEeCCcccc
Q 018694 8 LLVLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AG-YTVTVFNRTLSKA 85 (351)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g-~~V~~~dr~~~~~ 85 (351)
.++...+++++++|+..++....... + +..++|+|||+|.+|.+.+..+.. .+ .+|.+|+|++++.
T Consensus 103 ai~~d~~~lt~~rT~a~~~~a~~~la-------~-----~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a 170 (330)
T PRK08291 103 ALLLDNGYLTDVRTAAAGAVAARHLA-------R-----EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKA 170 (330)
T ss_pred EEEcCCchHHHHHHHHHHHHHHHHhC-------C-----CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 34456789999999888877766421 1 112589999999999999998875 44 4799999999998
Q ss_pred hhHHhc-----CCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 86 QPLLDI-----GAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 86 ~~~~~~-----g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.+.+. |+. ..++.++++.++|+|+.|+|... .++. . ..+.+++.+..+..
T Consensus 171 ~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~---p~i~----~--~~l~~g~~v~~vg~ 228 (330)
T PRK08291 171 EAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE---PILK----A--EWLHPGLHVTAMGS 228 (330)
T ss_pred HHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---cEec----H--HHcCCCceEEeeCC
Confidence 888663 343 36788899999999999995432 2222 1 12456666665544
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-07 Score=81.70 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=84.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~~ 88 (351)
-...++++|| .++.+...++.+. ...+++|||+|.+|...+..+.. .+. +|.+|+|++++.+.+
T Consensus 100 d~~~lT~~RTaA~sala~~~La~~-------------~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 166 (304)
T PRK07340 100 DGPTVTGRRTAAVSLLAARTLAPA-------------PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF 166 (304)
T ss_pred cChhHHHHHHHHHHHHHHHHhCCC-------------CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 5567788888 5555555555331 12579999999999999999975 454 799999999988877
Q ss_pred Hhc----CCcc-cCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 89 LDI----GAHL-ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 89 ~~~----g~~~-~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
.++ ++.. +.+.++++.++|+|+.|+|... .++. . .+++|+.|..+++-.|..
T Consensus 167 a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~~----~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 167 CAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVYP----E---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred HHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ceeC----c---cCCCCCEEEecCCCCCCc
Confidence 665 3333 4678889999999999996543 3443 2 357899998888765543
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-07 Score=83.09 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=86.4
Q ss_pred hhhhhhhccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCc
Q 018694 6 PLLLVLRSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTL 82 (351)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~ 82 (351)
|++++.-...++++|| .++.+...++.+. ...+++|||+|.++...+..+... -.+|.+|+|++
T Consensus 97 p~Ail~d~~~lT~~RTaA~sala~~~La~~-------------d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~ 163 (315)
T PRK06823 97 PQALLLDEGWLTALRTALAGRIVARLLAPQ-------------HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSE 163 (315)
T ss_pred eEEEEcCCChHHHHHHHHHHHHHHHHhcCC-------------CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCH
Confidence 3444446678888999 4555555555331 125799999999999999988753 22799999999
Q ss_pred ccchhHHhc----CC--cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 83 SKAQPLLDI----GA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 83 ~~~~~~~~~----g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
++.+.+.+. ++ ..+++.++++.++|+|+.|++... .+++ ..++++++.|..+++-.|.
T Consensus 164 ~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~~~------~~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 164 TALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PLLQ------AEDIQPGTHITAVGADSPG 227 (315)
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ceeC------HHHcCCCcEEEecCCCCcc
Confidence 998776643 33 347889999999999999995332 3332 1346789998888876554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=80.02 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh----c----C--Cc--ccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD----I----G--AH--LADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~----~----g--~~--~~~~~~~~~~~~DiIi~~vp~ 115 (351)
||||+|||+|.||..+|..++..|+ +|+++|+++++.+.... . + .+ ..++. +.+.++|+||+++..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 6899999999999999999998876 99999998876543221 1 1 12 23455 457899999999732
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..+++++. ++.+.. ++.++|..+|-
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~----~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAE----GIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 2 22455555 555554 55666766664
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=79.24 Aligned_cols=140 Identities=16% Similarity=0.245 Sum_probs=92.8
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.++|.|++|+||..++.+.+.... . . . ..++.|+|+|..+.+++..|.+.|. +|++++|++++.+.+
T Consensus 94 ~~~~g~l~G~NTD~~Gf~~~L~~~~-~----~--~----~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 94 VNTDGHLKAYNTDYIAIAKLLASYQ-V----P--P----DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred EeeCCEEEEEecCHHHHHHHHHhcC-C----C--C----CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 3467889999999999998885321 0 1 0 1379999999999999999999987 699999999988887
Q ss_pred Hhc-CCcccCCHHHhhcCCCEEEEecCChhH--HHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 89 LDI-GAHLADSPHSLASQSDVVFSIVGYPSD--VRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 89 ~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~--~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
.+. +.....+. ....+|+||-|+|-... .+.-.. .+ ...+.++.+++|+.-....+ .+.+..++.|+.
T Consensus 163 a~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~~~----pi~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~ 234 (272)
T PRK12550 163 AELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEADKL----AFPEAEIDAASVVFDVVALPAET--PLIRYARARGKT 234 (272)
T ss_pred HHHhCCcchhhc--ccccCCEEEECCccccCCCCccccC----CCCHHHcCCCCEEEEeecCCccC--HHHHHHHHCcCe
Confidence 664 22111111 12458999999964321 000000 11 12356778899988653322 455555666777
Q ss_pred EEec
Q 018694 165 AIDA 168 (351)
Q Consensus 165 ~v~~ 168 (351)
++++
T Consensus 235 ~i~G 238 (272)
T PRK12550 235 VITG 238 (272)
T ss_pred EeCC
Confidence 7755
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-06 Score=77.32 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=67.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcc--cchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLS--KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~--~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||||+|||+|.||..+++.+.+. +.++. ++++... +.......+...+++.+++..++|+|+.|+|.. ...+...
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~~ 79 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHVV 79 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHHH
Confidence 58999999999999999999875 45654 3344321 222222225677888888745699999999554 4444444
Q ss_pred CCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCCCc
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~~~ 164 (351)
.. +..|+-++..+.+ .....+.+.+...+.|..
T Consensus 80 ----~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 80 ----PI---LKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred ----HH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 33 3456656655543 233345566666655654
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=78.30 Aligned_cols=186 Identities=18% Similarity=0.149 Sum_probs=113.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.||+|||+|+.|.+-|.+|.++|.+|++--|-... .+...+.|..+ .+.+|++..+|+|++.+ |+..-.+++..
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~-PDe~q~~vy~~--- 93 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILL-PDEQQKEVYEK--- 93 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeC-chhhHHHHHHH---
Confidence 68999999999999999999999998877665444 56666678876 47999999999999999 55555556663
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEEe-cC--CHHHHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIFA-GG--DESVVQKLNPL 199 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~~-~g--~~~~~~~v~~l 199 (351)
.+.+.+.+++.+. .+.+..-+... ..+.+++.++ -+|-.++..- ...|..++++ -. +..+.+.....
T Consensus 94 ~I~p~Lk~G~aL~-FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 94 EIAPNLKEGAALG-FAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred HhhhhhcCCceEE-eccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 7888888887544 55443222211 1233455544 3455544321 1112222222 11 34566777777
Q ss_pred HHhhCc----eEEcC-------C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 200 FALMGK----VNYMG-------G-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 200 l~~~g~----~~~~g-------~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
...+|. ++.+. | .|--.+ +..+...++.-++..+...|.+++.++
T Consensus 170 AkgiGg~RaGvieTTFkeEtetDLfGEQ~v-------LcGgl~~li~agfetLvEaGy~PE~Ay 226 (338)
T COG0059 170 AKGIGGTRAGVIETTFKEETETDLFGEQAV-------LCGGLQALIKAGFETLVEAGYQPELAY 226 (338)
T ss_pred HHhcCCCccceEeeeeHHhhhcccccchhh-------hhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 788874 33221 1 122111 222333444455556678888886443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.4e-07 Score=82.88 Aligned_cols=92 Identities=29% Similarity=0.420 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CCccc--CCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+||+|||+|.||..+++.|...| .+|++++|++++.+.+.+. |.... ++..+.+.++|+||.|++.+.. ...+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~ 256 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIVE 256 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHH
Confidence 378999999999999999998855 6899999999887777665 44322 2456667889999999965544 33232
Q ss_pred CCCCCccc-CCCCCcEEEecCC
Q 018694 125 HPSSGALS-GLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~-~l~~~~~ii~~s~ 145 (351)
.... ...++.+++|++.
T Consensus 257 ----~~~~~~~~~~~~viDlav 274 (311)
T cd05213 257 ----RAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ----HHHhhCCCCCeEEEEeCC
Confidence 2211 1135779999985
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=78.96 Aligned_cols=73 Identities=27% Similarity=0.471 Sum_probs=61.0
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEe-CCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFN-RTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~d-r~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
-.+|+||| .|.||..||..|.++|++|++|+ |++ +++++++++|+||+|++++..++..+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~--- 219 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW--- 219 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe---
Confidence 36899999 99999999999999999999995 653 46788889999999998877555433
Q ss_pred CCCcccCCCCCcEEEecCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+|+++||++..
T Consensus 220 -------lk~GavVIDvGin 232 (296)
T PRK14188 220 -------IKPGATVIDVGIN 232 (296)
T ss_pred -------ecCCCEEEEcCCc
Confidence 4689999998743
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=84.22 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=74.3
Q ss_pred CeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcccchhHHhcCCc---c---------------c--CCHHH---hhcC
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH---L---------------A--DSPHS---LASQ 105 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~---~---------------~--~~~~~---~~~~ 105 (351)
|||.++|+|+||++ ++..|.++|++|+++|++++.++.++++|.. . . .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 68999999999985 5888899999999999998888888887631 1 1 01122 2347
Q ss_pred CCEEEEecCChhHHHHHhhCCCCCcccCCC--------CCcEEEecCCCChhHHHHHHHHHh
Q 018694 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLR--------PGGIIVDMTTSEPSLASELSAAAS 159 (351)
Q Consensus 106 ~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~--------~~~~ii~~s~~~~~~~~~l~~~~~ 159 (351)
+|+|.+++ ++...+++.. .+.+.+. ++-.|++|-|+ ....+.+.+.+.
T Consensus 81 ~dlvt~~v-~~~~~~s~~~----~l~~~L~~R~~~~~~~~~~VlsceN~-~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAV-GPNILPFIAP----LIAKGLKKRKAQGNTKPLNIIACENM-IRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCC-CcccchhHHH----HHHHHHHHHHHcCCCCCCEEEecCCh-hhHHHHHHHHHH
Confidence 89999999 7776666665 5554442 23379999998 666666665543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.9e-06 Score=79.77 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-.+|+|||+|.+|..+|..+...|.+|+++++++.+.......|... .+.++++..+|+|++|+.....+..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~~------- 325 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIITL------- 325 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccCH-------
Confidence 36899999999999999999999999999999877654444456654 4688999999999999843332221
Q ss_pred CcccCCCCCcEEEecCCCC
Q 018694 129 GALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~ 147 (351)
+....++++.++++++.+.
T Consensus 326 e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 326 EHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHHhccCCCcEEEEcCCCc
Confidence 2334567999999998774
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=73.51 Aligned_cols=115 Identities=25% Similarity=0.306 Sum_probs=73.6
Q ss_pred CCeEEEEc-cChhhHHHHHHHHH-CCCeEE-EEeCC-cccc-hhHHh------cCCcccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLN-AGYTVT-VFNRT-LSKA-QPLLD------IGAHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~-~g~~V~-~~dr~-~~~~-~~~~~------~g~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
||||+|+| +|.||..+++.+.+ .+++++ ++||. ++.. +.+.+ .|+..+++++++...+|+||.|+ ++.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT-~p~ 79 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFT-TPE 79 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECC-ChH
Confidence 47999999 69999999999986 567755 56754 2221 11111 25667788888856799999999 555
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC-CChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT-SEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~-~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
...+.+. .. +..+.-+|..++ .++...+++.+.....++.++-+|++
T Consensus 80 ~~~~~~~----~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLK----FA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHHHH----HH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 5554554 22 334554554333 34445556666655556767766665
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.8e-07 Score=71.99 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcC------CcccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIG------AHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g------~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
..|+.|||+|.+|.+++..|.+.|.. |++++|+.++++.+.+.- ....++..+.+.++|+||.|+|-+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 36899999999999999999999986 999999999988887652 2234556667789999999996553
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-06 Score=77.73 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=64.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHH----hc--------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLL----DI--------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~----~~--------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.||..+|..++..|+ +|+++|++++..+... +. .+....+.++ +.++|+||+|++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 699999999999999999999887 8999999766433111 11 1334567766 68999999999632
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .+++++. ++.++. ++.++|..+|-
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~----~I~~~~-p~~~iIv~tNP 120 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTG----RIMEHS-PNPIIVVVSNP 120 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 2 2344554 555553 66778877774
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=81.29 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=81.6
Q ss_pred hccccccccch-hhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSLS-VSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~ 88 (351)
-..+++++||. ++.+...++.+ +...+|+|||+|.+|...+..+... +. .|.+|+|++++.+.+
T Consensus 104 d~~~lT~~RTaA~sala~~~La~-------------~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~ 170 (326)
T PRK06046 104 DGTYLTDMRTGAAGGVAAKYLAR-------------KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKF 170 (326)
T ss_pred cCccHHHHHHHHHHHHHHHHhCC-------------CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHH
Confidence 56778888994 44544444432 1125799999999999999998743 33 688999999888776
Q ss_pred Hhc-----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI-----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~-----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.+. + +..+++.++++. +|+|++|+|... .++. ..++++++.|..+++-.|.
T Consensus 171 ~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P~~~------~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 171 VERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---PVVK------AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred HHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---cEec------HHHcCCCCEEEecCCCCCc
Confidence 653 3 345678888886 999999996532 3332 1245789888888776554
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=80.30 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=82.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~ 88 (351)
-..+++++|| .++.+...++ + .++ .+++|||+|.+|...+..+... +. +|.+|+|++++.+.|
T Consensus 93 d~~~lT~~RTaA~salaa~~l-~----~da---------~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f 158 (301)
T PRK06407 93 EANRLGQIRTGAVTAYATSIL-H----KNV---------ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAF 158 (301)
T ss_pred ccchHHHHHHHHHHHHHHHHh-h----cCC---------cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 5677889999 4445554433 2 121 4799999999999999988763 22 799999999998877
Q ss_pred Hhc-----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI-----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~-----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.+. | +..++++++++.++|+|+.|++... .++. ..+++++..|..+.+-.|.
T Consensus 159 ~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P~~~------~~~l~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 159 AERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---PIFN------RKYLGDEYHVNLAGSNYPN 217 (301)
T ss_pred HHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---cEec------HHHcCCCceEEecCCCCCC
Confidence 554 3 4557899999999999999995332 3332 1245688888877765553
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=70.83 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=63.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH-HHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD-VRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~-~~~v~~~~~~ 128 (351)
+++.|+|+|.+|..+|+.|...|.+|++++++|-+.-+....|..+. +.++++.++|++|.++..... ..+.+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~~---- 98 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHFR---- 98 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHHH----
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHHH----
Confidence 57999999999999999999999999999999977666666688765 789999999999999955332 233343
Q ss_pred CcccCCCCCcEEEecCCCChh
Q 018694 129 GALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.++++.++.+......+
T Consensus 99 ----~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 99 ----QMKDGAILANAGHFDVE 115 (162)
T ss_dssp ----HS-TTEEEEESSSSTTS
T ss_pred ----HhcCCeEEeccCcCcee
Confidence 35688888887765443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=81.01 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=83.0
Q ss_pred hhccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-C-CeEEEEeCCcccchh
Q 018694 11 LRSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-G-YTVTVFNRTLSKAQP 87 (351)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g-~~V~~~dr~~~~~~~ 87 (351)
.....++++|| .++.+...++.+. ...+++|||+|..+...+..+... . .+|.+|+|++++.+.
T Consensus 103 ldg~~lT~~RTaA~sala~~~Lar~-------------da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~ 169 (346)
T PRK07589 103 SEMTLLTALRTAATSALAAKYLARP-------------DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAK 169 (346)
T ss_pred EcCccHHHHHHHHHHHHHHHHhccC-------------CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHH
Confidence 36677888999 5555555555331 125799999999999988877652 2 279999999998877
Q ss_pred HHhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 88 LLDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 88 ~~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
+.+. + +..+++.++++.++|+|+.|++ +.....+++ ..++++|+.|..+.+-.|.
T Consensus 170 ~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~-S~~~~Pvl~------~~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 170 LARNLAGPGLRIVACRSVAEAVEGADIITTVTA-DKTNATILT------DDMVEPGMHINAVGGDCPG 230 (346)
T ss_pred HHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC-CCCCCceec------HHHcCCCcEEEecCCCCCC
Confidence 6643 3 4457899999999999999994 322123333 1245788888877765443
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-06 Score=69.90 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=63.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+ |.+|..++..|...+. ++.++|+++++++..... .........+.++++|+|+++...+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 79999999 9999999999998876 899999997765443221 1233445566788999999988432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. ++..+. ++.+++..+|-
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~----~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAK----KIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHH----HHHHHS-TTSEEEE-SSS
T ss_pred ccccccHHHHHHHhHhHHHHHHH----HHHHhC-CccEEEEeCCc
Confidence 1 2344444 444444 66677766653
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=77.12 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=74.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.+|+|+|+|.+|..++..+...|.+|+++++++.+.......|.... +.++++..+|+||.+++....+..-
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------- 267 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------- 267 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH-------
Confidence 68999999999999999999999999999999877655555676544 5678889999999998554444431
Q ss_pred cccCCCCCcEEEecCCCCh-hHHHHHHHH
Q 018694 130 ALSGLRPGGIIVDMTTSEP-SLASELSAA 157 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~-~~~~~l~~~ 157 (351)
....++++.++++.+.... -....+.+.
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 2235678999999887644 223344443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=74.13 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=70.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCc-ccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTL-SKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~-~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++||+|+|+|+||..++..+.+. +++++ ++++++ ++.. ...+.....+.++...++|+|++|+|...+.+.+..
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~- 79 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAP- 79 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHH-
Confidence 47999999999999999999765 67866 578885 3322 112444455677777889999999988777665554
Q ss_pred CCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhc-CCCcEEe
Q 018694 126 PSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASS-KNCSAID 167 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~-~~~~~v~ 167 (351)
. +..+.-+|+..-. .+...+.+.+..++ .++.++.
T Consensus 80 ---~----L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 80 ---Y----FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred ---H----HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 2 3355556654321 23445566655553 2444443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-06 Score=78.26 Aligned_cols=137 Identities=21% Similarity=0.306 Sum_probs=94.8
Q ss_pred hhhhccccccccch-hhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-C-CeEEEEeCCcccc
Q 018694 9 LVLRSRTAHSYSLS-VSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-G-YTVTVFNRTLSKA 85 (351)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g-~~V~~~dr~~~~~ 85 (351)
++.-..++.++||. ++.+....+.++ ++ ..++|||+|.++......+..- + -+|.+|+|+++..
T Consensus 102 al~d~~~lTa~RTaAasavAa~~LA~~----da---------~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~ 168 (330)
T COG2423 102 ALLDATRLTALRTAAASAVAAKYLARK----DA---------STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA 168 (330)
T ss_pred EEecCccHHHHHHHHHHHHHHHHhccC----CC---------cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH
Confidence 33455678888994 445555555442 22 4699999999999999998763 2 2799999999998
Q ss_pred hhHHhc----C---CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHH
Q 018694 86 QPLLDI----G---AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAA 158 (351)
Q Consensus 86 ~~~~~~----g---~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~ 158 (351)
+.+... + +..+++.++++..+|+|+.|+|... .++. ..++++++.|..+.+-.|+- .++...+
T Consensus 169 e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---Pil~------~~~l~~G~hI~aiGad~p~k-~Eld~e~ 238 (330)
T COG2423 169 EAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---PVLK------AEWLKPGTHINAIGADAPGK-RELDPEV 238 (330)
T ss_pred HHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---Ceec------HhhcCCCcEEEecCCCCccc-ccCCHHH
Confidence 887644 2 4678899999999999999995433 3443 24567888888777654433 3443333
Q ss_pred hcC-CCcEEec
Q 018694 159 SSK-NCSAIDA 168 (351)
Q Consensus 159 ~~~-~~~~v~~ 168 (351)
-.+ +..++|.
T Consensus 239 l~ra~~vvvD~ 249 (330)
T COG2423 239 LARADRVVVDS 249 (330)
T ss_pred HHhcCeEEEcC
Confidence 323 3566665
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-06 Score=78.03 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.+|+|+|+|.+|..++..+...|.+|+++++++.+.......|..+ .+.++++..+|+||.|+.....+..-
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~------- 284 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAE------- 284 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHH-------
Confidence 6899999999999999999999999999999988765555557654 46788889999999998554444321
Q ss_pred cccCCCCCcEEEecCCCC
Q 018694 130 ALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~ 147 (351)
....++++.++++.+...
T Consensus 285 ~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 285 HMEAMKDGAILANIGHFD 302 (425)
T ss_pred HHhcCCCCCEEEEcCCCC
Confidence 223457889999887654
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.3e-06 Score=65.26 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=58.8
Q ss_pred eEEEEcc-ChhhHHHHHHHHHC-CCeEEEE-eCCcccchhHHhcCCcc----cCCH--HHh-hcCCCEEEEecCChhHHH
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNA-GYTVTVF-NRTLSKAQPLLDIGAHL----ADSP--HSL-ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~-dr~~~~~~~~~~~g~~~----~~~~--~~~-~~~~DiIi~~vp~~~~~~ 120 (351)
||+|+|+ |.+|..++..|.+. ++++..+ +++.++.+.+...+-.. ..+. ++. ..++|+||+|+|+.. ..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 6999995 99999999999884 7776655 66544444444332111 1111 111 147999999995554 44
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+++. .+...+.+|+++||+++.
T Consensus 80 ~~~~----~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 80 EIAP----LLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHH----HHHhhhcCCCEEEECCcc
Confidence 4443 344456789999999965
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-06 Score=80.35 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=78.9
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC--CC-eEEEEeCCcccchh
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA--GY-TVTVFNRTLSKAQP 87 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~--g~-~V~~~dr~~~~~~~ 87 (351)
-..+++++|| .++.+...++.+. ...+++|||+|.++......+... .. +|.+|+|++++.+.
T Consensus 130 dg~~lTa~RTaA~salaa~~LAr~-------------da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~ 196 (379)
T PRK06199 130 SANLLSAYRTGAVPGVGARHLARK-------------DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS 196 (379)
T ss_pred cCcchhhhHHHHHHHHHHHHhccC-------------CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 5677888999 5555555555331 125799999999999999998763 23 79999999998877
Q ss_pred HHhc------C---CcccCCHHHhhcCCCEEEEecCChh---HHHHHhhCCCCCcccCCCCCcEEEec
Q 018694 88 LLDI------G---AHLADSPHSLASQSDVVFSIVGYPS---DVRHVLLHPSSGALSGLRPGGIIVDM 143 (351)
Q Consensus 88 ~~~~------g---~~~~~~~~~~~~~~DiIi~~vp~~~---~~~~v~~~~~~~i~~~l~~~~~ii~~ 143 (351)
|.+. + +..+++.++++.++|+|+.|++... ....+++ ..++++|+.|+..
T Consensus 197 f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~------~~~lkpG~hv~~i 258 (379)
T PRK06199 197 FATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK------REWVKPGAFLLMP 258 (379)
T ss_pred HHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec------HHHcCCCcEEecC
Confidence 6543 2 4457899999999999999994322 1122332 1245678776643
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=74.58 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=76.9
Q ss_pred CCCeEEEEccChhh-HHHHHHHHHCCC--e-EEEEeCCcccchhHHhc-CC-cccCCHHHhhcC--CCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMG-RSMCAHLLNAGY--T-VTVFNRTLSKAQPLLDI-GA-HLADSPHSLASQ--SDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG-~~ia~~L~~~g~--~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~~--~DiIi~~vp~~~~~ 119 (351)
+++||||||+|.++ ...+..+.+.+. + |.++|+++++++.+.++ |+ ..+++.++++++ .|+|++|+|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 46899999999665 558888887663 4 66779999998888776 66 478899999875 59999999888888
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCC---CChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTT---SEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~---~~~~~~~~l~~~~~~~~~~~ 165 (351)
+-++. .+ ..|+.|+ |=+ .+....+++.+..++.++.+
T Consensus 82 e~~~~----AL----~aGkhVl-~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 82 ELALA----AL----EAGKHVL-CEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HHHHH----HH----hcCCEEE-EcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 76665 33 3444433 112 23556666666666555433
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.7e-06 Score=75.25 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=63.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
+||+|||+|.+|..++..|+..| ++|+++|+++++.+.+... .........+.+.++|+||++++.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999998 5899999998876554332 11222233345789999999996531
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++.. .+..+ .++.+++..+|
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~----~i~~~-~~~~~vivvsN 118 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVP----KIKAS-GFDGIFLVASN 118 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEecC
Confidence 1344554 45443 35667777776
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=76.31 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|.... +.++.+..+|+||.|+.....+...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------- 274 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------- 274 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH-------
Confidence 68999999999999999999999999999999988877777787544 4577788999999999655444433
Q ss_pred cccCCCCCcEEEecCCC
Q 018694 130 ALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~ 146 (351)
....++++.++++.+..
T Consensus 275 ~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 275 HFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 12346788899888754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-06 Score=75.75 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=87.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
+++||||+|.+|+.+|.++..-|..|+.||.-. ..+.....|+... +.+|+...+|+|=+-+|-..+++.++.. .
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~---~ 221 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLND---E 221 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCH---H
Confidence 679999999999999999999999999998642 2344555677765 7899999999999999988999988874 4
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
-...+++|..||+++.|..-....+-+.+..
T Consensus 222 tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 4566889999999999887777777777753
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=79.31 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=66.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--CCc----ccCCHHHhhcCCCEEEEecCCh--hHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--GAH----LADSPHSLASQSDVVFSIVGYP--SDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--g~~----~~~~~~~~~~~~DiIi~~vp~~--~~~~ 120 (351)
.||+|||+|.||..+++.|...|. +|++++|+.++.+.+.+. +.. ..++..+.+.++|+||.|++.+ ...+
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~ 346 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLK 346 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCH
Confidence 689999999999999999999997 699999999998888764 221 2345667788999999998433 2344
Q ss_pred HHhhCCCCCcccC---CCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSG---LRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~---l~~~~~ii~~s~ 145 (351)
+.+. .+... ..+..++||++-
T Consensus 347 e~l~----~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 347 EHVE----ALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred HHHH----HhhhcccccCCCeEEEEeCC
Confidence 4444 33211 012358888873
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=76.34 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=69.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHH-HHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDV-RHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~-~~v~~~~~~ 128 (351)
.+|+|+|+|.+|..+|..+...|.+|+++++++.+.......|.... +.++++..+|+||.|+.....+ .+.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~L----- 328 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDHM----- 328 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHHH-----
Confidence 68999999999999999999999999999999876555555566544 6788889999999988443322 3333
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..++++.++++++..
T Consensus 329 ---~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 329 ---RKMKNNAIVCNIGHF 343 (477)
T ss_pred ---hcCCCCCEEEEcCCC
Confidence 356789999999884
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=82.67 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC-Ce-------------EEEEeCCcccchhHHhc--C---Ccc-cCCHHHhh---c
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG-YT-------------VTVFNRTLSKAQPLLDI--G---AHL-ADSPHSLA---S 104 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g-~~-------------V~~~dr~~~~~~~~~~~--g---~~~-~~~~~~~~---~ 104 (351)
.|+||+|||+|.||..++..|++.. .+ |+++|++.++++.+.+. + +.. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4679999999999999999998742 23 89999998888777653 3 233 45656554 5
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++|+||+|+|...+.. ++. . .+..++.+++.+-. .....++.+...+.|+.++.
T Consensus 648 ~~DaVIsalP~~~H~~-VAk----a---AieaGkHvv~eky~-~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 648 QVDVVISLLPASCHAV-VAK----A---CIELKKHLVTASYV-SEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred CCCEEEECCCchhhHH-HHH----H---HHHcCCCEEECcCC-HHHHHHHHHHHHHcCCEEEE
Confidence 7999999997765543 333 1 23356667766633 55556677777666766654
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-06 Score=78.81 Aligned_cols=119 Identities=22% Similarity=0.282 Sum_probs=73.4
Q ss_pred hhccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchh
Q 018694 11 LRSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQP 87 (351)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~ 87 (351)
.-..+++++|| .++.+...++.+ .+ ..+++|||+|..|...+..+.. .+. +|.+|+|++++.+.
T Consensus 102 ~dg~~lT~~RTaA~sala~~~La~----~~---------~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~ 168 (313)
T PF02423_consen 102 MDGTWLTALRTAAVSALAARYLAR----PD---------ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEA 168 (313)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHS-----TT-----------EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHH
T ss_pred ecccchhhhHHHHHHHHHHHHhCc----CC---------CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHH
Confidence 35667888888 444544444322 11 2479999999999999998875 333 79999999998877
Q ss_pred HHhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 88 LLDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 88 ~~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
|.+. + +..+++.++++.++|+|+.|+|.... ..++. ..++.+++.|..+....|.
T Consensus 169 ~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P~~~------~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 169 FAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-APVFD------AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp HHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EESB-------GGGS-TT-EEEE-S-SSTT
T ss_pred HHHhhccccccceeccchhhhcccCCEEEEccCCCCC-Ccccc------HHHcCCCcEEEEecCCCCc
Confidence 7654 3 44578999999999999999944331 12333 1356789998888876553
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=72.79 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc--------C----CcccCCHHHhhcCCCEEEEecCC-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI--------G----AHLADSPHSLASQSDVVFSIVGY- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~~~~~~~DiIi~~vp~- 115 (351)
+||+|||+|.||..++..++..| .++.++|+++++.+...-. + +...++.+ .+.++|+||++...
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~ 84 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQ 84 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 69999999999999999999888 5899999998764331110 1 22234555 67899999999922
Q ss_pred --h------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 --P------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 --~------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..+++++. .+..+ .++.++|..+|-
T Consensus 85 ~~~g~~r~dll~~n~~i~~~i~~----~i~~~-~p~a~vivvsNP 124 (319)
T PTZ00117 85 RKEEMTREDLLTINGKIMKSVAE----SVKKY-CPNAFVICVTNP 124 (319)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCeEEEEecCh
Confidence 2 33455665 55554 467777777764
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=72.47 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=60.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|+|||. |.||..++..|.++|+.|++|... +.++.+.++++|+||+|++++..++..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~----- 219 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF----- 219 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----
Confidence 68999999 999999999999999999999321 1267888899999999998877666543
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
+.+|+++||++..
T Consensus 220 -----ik~GavVIDvgin 232 (284)
T PRK14179 220 -----VKEGAVVIDVGMN 232 (284)
T ss_pred -----ccCCcEEEEecce
Confidence 4689999998843
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=74.43 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=49.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchh----HHhcC-----Ccc-cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQP----LLDIG-----AHL-ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~----~~~~g-----~~~-~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.+|..+|..|+..| .+|.++|+++++.+. +.... ... ..+. +.+.++|+||+|++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 68999999999999999999999 589999999876653 22110 111 2344 5578999999999653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.6e-05 Score=56.30 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGIC 292 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 292 (351)
..+...|++.|.+....+++++|...+|++.|++..++.+.+....... +.+.. -.+|+.-.++.||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~-------~~~~~--pg~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG-------PHYLR--PGPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT-------SSS-S---SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc-------cccCC--CCCCCCCcchhhhHHHH
Confidence 3678899999999999999999999999999999999999987764321 11111 11345566789999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 018694 293 LKECQNMGLALPGLALAQQLYL 314 (351)
Q Consensus 293 ~~~a~~~gv~~p~~~~~~~l~~ 314 (351)
+..++++|.+.++++.+.+.-.
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999998888776543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=77.14 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=50.8
Q ss_pred CeEEEEccChhhHHHHH--HH----HHCCCeEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCA--HL----LNAGYTVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~--~L----~~~g~~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
+||+|||+|.||.+.+. .+ ...|++|++||+++++++..... .+..+++..+++.++|+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998665 33 34578999999999876654332 13456788889999999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+++
T Consensus 81 ai~ 83 (423)
T cd05297 81 TIQ 83 (423)
T ss_pred eeE
Confidence 995
|
linked to 3D####ucture |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=76.17 Aligned_cols=66 Identities=32% Similarity=0.434 Sum_probs=56.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-C--CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-G--AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g--~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.|+.|||+|.||...+++|.+.|. .|++.+|+.++++.++++ | +...++..+.+.++|+||.|+..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC
Confidence 679999999999999999999995 799999999999988877 4 33345666778899999999843
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=72.55 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=51.4
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
+..+||+|||+|.+|..++..|...|. ++.++|++.++++..... ......+.-+.++++|+||++...
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 344799999999999999999998888 899999988765443221 122233334557899999998844
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.5e-05 Score=71.49 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCeEEEEccChhhHH-HHHHHHH-CCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLN-AGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~ 123 (351)
++||||||+|.+|.. .+..+.. .+.+++ ++|+++++.+. ...+...+++.+++++ +.|+|++|+|+..+.+.+.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 479999999999984 5666655 356765 67988765431 1114567889999986 5799999998888777666
Q ss_pred hCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 124 LHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
. .+ ..|+.|+ .-- ..+....+++.+...+.++.+
T Consensus 83 ~----al----~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 83 A----AL----EAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred H----HH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 5 22 3444444 311 123555666766666555443
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=61.15 Aligned_cols=190 Identities=18% Similarity=0.139 Sum_probs=116.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+.++|||.|..|.+....-...++.+. +..|++++.+.+.+.-.-.-.+.+...+-.+++|+-+|. ..+..+.-
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd-~~~s~vaa---- 85 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPD-ALYSGVAA---- 85 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchH-HHHHHHHH----
Confidence 789999999999995544444444544 336777777666554111111222223345788888843 33333332
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCC---CCchhhc--cCceeEEecCCHHHHHHHHHHHHh
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVS---GGDRGAK--TGTLAIFAGGDESVVQKLNPLFAL 202 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~---~~~~~~~--~g~~~~~~~g~~~~~~~v~~ll~~ 202 (351)
. ..-.+++++++||.-. ...+...+.+.|+.-..- |.+ |.+...+ .++...+..+|+.....++.+...
T Consensus 86 ~--~~~rpg~iv~HcSga~---~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~e 160 (289)
T COG5495 86 T--SLNRPGTIVAHCSGAN---GSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALE 160 (289)
T ss_pred h--cccCCCeEEEEccCCC---chhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHH
Confidence 1 2346899999988532 335555555555433222 322 3333322 344444446788888889999998
Q ss_pred hCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 203 MGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 203 ~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
+|. ++.+. .+.-.....+.|...+.....+.++..+.+..|++..++
T Consensus 161 mgg~~f~V~-~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~ 208 (289)
T COG5495 161 MGGEPFCVR-EEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPEL 208 (289)
T ss_pred hCCCceeec-hhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcce
Confidence 887 55443 355556677778888888888999999999999886544
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=62.00 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=58.3
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCC-e-EEEEeCCcccchhHHhc--------CCcccCCHHHhhcCCCEEEEecCChhHH
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGY-T-VTVFNRTLSKAQPLLDI--------GAHLADSPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~-~-V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
||+||| .|.+|..+.+.|.+.-. + +.++.++.+.-+.+... .+.+.+...+.+.++|+||+|+ +....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~-~~~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLAL-PHGAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-S-CHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecC-chhHH
Confidence 799999 99999999999998433 4 44566665333333322 1223332334458999999999 66666
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+... .+ +.++..|||++..
T Consensus 80 ~~~~~----~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELAP----KL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHHH----HH---HHTTSEEEESSST
T ss_pred HHHHH----HH---hhCCcEEEeCCHH
Confidence 66665 44 4578899999864
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.2e-05 Score=75.49 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=89.6
Q ss_pred ccccccccchhhHHHHHHHHhhhccccCCC-CCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 13 SRTAHSYSLSVSSLVTLLLRRRSMATVAST-DPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
.|.|+||+|+..++.+.+... ....+... ........++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+.
T Consensus 343 ~g~l~G~NTD~~G~~~~l~~~-~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 343 DGKLVGYNTDYIGAISAIEDG-LRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEEcccHHHHHHHHHhh-hcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 578999999999999988531 11111110 0011122579999999999999999999999999999998888777654
Q ss_pred -CCcc--cCCHHHh-hcCCCEEEEecCChhHHHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 92 -GAHL--ADSPHSL-ASQSDVVFSIVGYPSDVRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 92 -g~~~--~~~~~~~-~~~~DiIi~~vp~~~~~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+... ..+..+. ...+|+|+-|+|-...-. .-.. .+ ...+.+..+++|+.-....+ .+.+..++.|+..+
T Consensus 422 l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~-~~~~---pl~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 495 (529)
T PLN02520 422 VGGQALTLADLENFHPEEGMILANTTSVGMQPN-VDET---PISKHALKHYSLVFDAVYTPKIT--RLLREAEESGAIIV 495 (529)
T ss_pred hCCceeeHhHhhhhccccCeEEEecccCCCCCC-CCCC---cccHhhCCCCCEEEEeccCCCcC--HHHHHHHHCCCeEe
Confidence 2111 1122221 234678887775433110 0000 01 12345677889887653322 34444455676666
Q ss_pred ec
Q 018694 167 DA 168 (351)
Q Consensus 167 ~~ 168 (351)
++
T Consensus 496 ~G 497 (529)
T PLN02520 496 SG 497 (529)
T ss_pred Cc
Confidence 54
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.2e-05 Score=62.92 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=56.4
Q ss_pred CeEEEEccChh-hHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.||.|||+|.| |..+++.|.+.|.+|++++|+. .+..+.+.++|+||.|++.+. + +..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~-i---i~~--- 103 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG-L---VKG--- 103 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc-e---ecH---
Confidence 68999999997 8889999999999999999873 355677889999999996554 2 220
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
..+.++.++||++.
T Consensus 104 ---~~~~~~~viIDla~ 117 (168)
T cd01080 104 ---DMVKPGAVVIDVGI 117 (168)
T ss_pred ---HHccCCeEEEEccC
Confidence 12356788999884
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.4e-05 Score=61.23 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=70.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----cCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----ADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||.+||+| .|..+|..|.+.|++|+..|.+++.++..++.+..+ .....+.-.++|+|..+=|+++-.+.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 689999999 999999999999999999999999888877775432 2233456678999999996665555444
Q ss_pred CCCCCcccCCCCCcEEEecCCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~ 147 (351)
.+...+.-+-+|..+++-.
T Consensus 96 ----~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 96 ----ELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ----HHHHHcCCCEEEEcCCCCC
Confidence 4666666666677666544
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=69.47 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=54.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh--cCCc---ccCC----HHHh-hcCCCEEEEecCChhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD--IGAH---LADS----PHSL-ASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~--~g~~---~~~~----~~~~-~~~~DiIi~~vp~~~~~ 119 (351)
|+|.|||+|.+|..+|+.|.+.||+|+++++++++++++.. .+.. ...+ +.++ +.++|+++.++ .....
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t-~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT-GNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee-CCCHH
Confidence 78999999999999999999999999999999999888544 2211 1122 2232 46799999999 44444
Q ss_pred HHHhh
Q 018694 120 RHVLL 124 (351)
Q Consensus 120 ~~v~~ 124 (351)
..++-
T Consensus 80 N~i~~ 84 (225)
T COG0569 80 NSVLA 84 (225)
T ss_pred HHHHH
Confidence 43443
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=76.85 Aligned_cols=68 Identities=29% Similarity=0.459 Sum_probs=54.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CCcc--cCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GAHL--ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.+|+|||+|.||..++..|...| .+|++++|+.++.+.+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 68999999999999999999999 6899999998887766554 3221 2355677789999999995443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.7e-05 Score=69.26 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc-----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI-----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||+|||+|.+|..+|..|...|. ++.++|+++++++..... .+....+.++ ++++|+||++...+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999988776 799999987654332211 1222356665 78999999977432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. .+..+ .++.+++..+|-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~----~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIP----KLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCcEEEEccCh
Confidence 1 1344444 45444 467777777763
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=70.69 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=59.5
Q ss_pred EEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH----Hhc----C----CcccCCHHHhhcCCCEEEEecCCh--
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL----LDI----G----AHLADSPHSLASQSDVVFSIVGYP-- 116 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~----~~~----g----~~~~~~~~~~~~~~DiIi~~vp~~-- 116 (351)
|+|||+|.||..+|..++..|+ +|+++|++++..+.. .+. + +....+.+ .+.+||+||+++..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999999998876 999999997754221 111 1 22234544 578999999988422
Q ss_pred -------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 -------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 -------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
...++++. ++.... ++.++|..+|-
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~----~i~~~~-p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAE----NIKKYA-PNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 12345555 555544 55666666663
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.4e-05 Score=70.10 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=47.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH-----Hh---cC----CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL-----LD---IG----AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~-----~~---~g----~~~~~~~~~~~~~~DiIi~~v 113 (351)
+||+|||+|.||..+|..++..|+ +|+++|+++++.+.. .. .+ +...++. +.+.++|+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 699999999999999999999996 899999998754211 11 01 2223565 4678999999977
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=77.84 Aligned_cols=68 Identities=34% Similarity=0.512 Sum_probs=54.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-CCcc--cCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-GAHL--ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
++|+|||+|.||..++..|...|. +|++++|++++.+.+... |... ..+..+.+.++|+||.|++.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 689999999999999999999997 799999999887766654 4222 2345566788999999996443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.7e-05 Score=73.30 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=55.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-C-Cc--ccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-G-AH--LADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g-~~--~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.||.|||+|.||..++..|...|. +|++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 579999999999999999999986 799999999988888765 2 22 22445667889999999995443
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00025 Score=66.52 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=75.0
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCC----hhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGY----PSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~----~~~~~~ 121 (351)
.||+|||+ .||...+..+.+. +++++ ++|+++++.+.+.++ |+..+++.++++.+.|++++++|. ..+.+-
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 68999999 6899999999875 46644 779999999888776 788889999999888999998843 244333
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+.. .+..|+.|+.=--......+++.+...++++.+.
T Consensus 83 a~~--------aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 ARA--------LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHH--------HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 332 1234443332111225666677777776676554
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-05 Score=64.93 Aligned_cols=66 Identities=27% Similarity=0.266 Sum_probs=50.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+ |..|+.|++...++||+|+.+.||++++..+... .+.--+...+.+..-|+||.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 79999987 9999999999999999999999999987664211 121122334567788999999843
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.9e-05 Score=75.15 Aligned_cols=94 Identities=20% Similarity=0.373 Sum_probs=65.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcc---c---CCHHHhhcCCCEEEEecCCh-hHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHL---A---DSPHSLASQSDVVFSIVGYP-SDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~---~---~~~~~~~~~~DiIi~~vp~~-~~~~~ 121 (351)
.||.|||+|.+|...++.+...|.+|+++|+++++.+.+... +..+ . .++.+.+.++|+||.|++-+ .....
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~ 247 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPK 247 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCc
Confidence 579999999999999999999999999999998887776554 2211 1 23456678999999997321 11111
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++.. +....++++.+|+|++..
T Consensus 248 lit~---~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 248 LVSN---SLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CcCH---HHHhcCCCCCEEEEEecC
Confidence 1110 222335688899998853
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=56.60 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=55.1
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C---CHHH----hhcCCCEEEEecCChhHHHHHh
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D---SPHS----LASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~---~~~~----~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|.|+|+|.+|..+++.|.+.+.+|++++++++..+.+.+.|..+. . +.+. -+.+++.++++++.+.....++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 578999999999999999977799999999999999988875431 1 2211 2368999999996665555555
Q ss_pred h
Q 018694 124 L 124 (351)
Q Consensus 124 ~ 124 (351)
.
T Consensus 81 ~ 81 (116)
T PF02254_consen 81 L 81 (116)
T ss_dssp H
T ss_pred H
Confidence 4
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.2e-05 Score=73.43 Aligned_cols=108 Identities=25% Similarity=0.262 Sum_probs=69.1
Q ss_pred EEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc--C-------Ccc--cCCHHHhhcCCCEEEEecCChhH
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI--G-------AHL--ADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~--g-------~~~--~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|.|||+|.+|..++..|.+.+. +|++.||+.++++.+.+. + +.+ ..++.++++++|+||.|+|+. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 7899999999999999998764 899999999998887653 1 111 112456788999999999554 4
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
...+++ .. +..+..+||.+. .......+.+...+.++.++.+
T Consensus 80 ~~~v~~----~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 80 GEPVAR----AC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp HHHHHH----HH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S
T ss_pred hHHHHH----HH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeC
Confidence 444554 22 346777888432 1333445566666667766643
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=69.00 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCeEEEEccChhhH-HHHHHHHH--CCCeEE-EEeCCcccchhHHhc--CCcccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGR-SMCAHLLN--AGYTVT-VFNRTLSKAQPLLDI--GAHLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~-~ia~~L~~--~g~~V~-~~dr~~~~~~~~~~~--g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
|.||||||+|.++. ..+..+.. .+++|+ ++|+++++. .+.++ ++..+++.+++++ +.|+|++|+|+..+.+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~ 79 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 79 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 47999999999775 34454533 356765 789987654 33333 3667889999986 5799999998888777
Q ss_pred HHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 121 HVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
-+.. .+ ..|+ +++.-- ..+....+++.+...+.++.+
T Consensus 80 ~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 80 YAKR----AL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred HHHH----HH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 6655 22 2333 333311 122555667777666655544
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.3e-05 Score=65.48 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=62.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCc--c--cCCH---HHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAH--L--ADSP---HSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~--~--~~~~---~~~~~~~DiIi~~vp~~ 116 (351)
+++.|+|. |.+|..++..|.+.|++|++++|+.++.+.+.+. +.. . ..+. .+.++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 68999985 9999999999999999999999998887666542 111 1 1222 35677899999999655
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..... .......++.+++|+...
T Consensus 109 ~~~~~-------~~~~~~~~~~vv~D~~~~ 131 (194)
T cd01078 109 VELLE-------KLAWAPKPLAVAADVNAV 131 (194)
T ss_pred ceech-------hhhcccCceeEEEEccCC
Confidence 53111 111223346789998764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=63.63 Aligned_cols=108 Identities=13% Similarity=0.182 Sum_probs=70.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC---eEEEEeCC----cccc-------hhHHhc-C-CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRT----LSKA-------QPLLDI-G-AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~----~~~~-------~~~~~~-g-~~~~~~~~~~~~~~DiIi~~v 113 (351)
+||.|+|+|.+|..++..|.+.|. +|+++||+ .++. +.+.+. + .....++.+.+.++|++|-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 689999999999999999999997 49999998 4443 223222 1 111135667778899999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-EEec
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS-AIDA 168 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~-~v~~ 168 (351)
|.....++.++ .+ .++.++++++|-.+ +.+.+...+.++. +.++
T Consensus 106 ~~G~~~~~~l~----~m----~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 106 RPGVVKKEMIK----KM----AKDPIVFALANPVP---EIWPEEAKEAGADIVATG 150 (226)
T ss_pred CCCCCCHHHHH----hh----CCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEeC
Confidence 64433344444 33 36778888885322 3344444445664 5544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=65.68 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=64.3
Q ss_pred EEEEcc-ChhhHHHHHHHHHCC----CeEEEEeCCcccchhHHhc-----------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 52 IGWIGT-GVMGRSMCAHLLNAG----YTVTVFNRTLSKAQPLLDI-----------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 52 I~iIG~-G~mG~~ia~~L~~~g----~~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|+|||+ |.||..++..|+..| .+|+++|+++++++..... .+...+++.+.+.++|+||++...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999888 6999999998776443221 233345667888999999996622
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..++++.. ++..+. ++.+++..+|-
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~----~i~~~~-p~a~~i~~tNP 121 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGD----NIEKYS-PDAWIIVVSNP 121 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 1 12455555 555544 77778777653
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0015 Score=57.37 Aligned_cols=109 Identities=9% Similarity=0.053 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc----------ccchhHHhcC-CcccC-----CHHHhh-cCCCEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL----------SKAQPLLDIG-AHLAD-----SPHSLA-SQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~----------~~~~~~~~~g-~~~~~-----~~~~~~-~~~DiIi 110 (351)
.+||+|.|+|++|..+++.|.+.|. .|.+.|.+. +.++...+.+ +.... +.+++. .+||+++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVli 102 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFA 102 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEe
Confidence 4799999999999999999999988 466678876 4444443332 22111 112222 4799999
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.|.+......+... ++ +-++|+...|. |.+. +-.+.+.++|+.|++-
T Consensus 103 paA~~~~i~~~~a~----~l-----~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 103 PCALGNVIDLENAK----KL-----KAKVVAEGANN-PTTD-EALRILHERGIVVAPD 149 (217)
T ss_pred eccccCccChhhHh----hc-----CccEEEeCCCC-CCCH-HHHHHHHHCCcEEECh
Confidence 99955544444443 33 35578888886 4333 5566777788887754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=69.12 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=57.0
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHC-CCeEEE-EeCCcccchhHHhc-C-Cc-----ccCCHHH-hhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNA-GYTVTV-FNRTLSKAQPLLDI-G-AH-----LADSPHS-LASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~-~dr~~~~~~~~~~~-g-~~-----~~~~~~~-~~~~~DiIi~~vp~~ 116 (351)
+|+||+|||+ |.+|..+++.|.+. +++++. +++. +..+.+.+. + +. ...+.++ ...++|+||+|+|..
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 4689999997 99999999999875 567654 4533 332223221 0 11 1222222 446799999999665
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. ..++.. .+. ..|..|||+|+.
T Consensus 80 ~-~~~~v~----~a~---~aG~~VID~S~~ 101 (343)
T PRK00436 80 V-SMDLAP----QLL---EAGVKVIDLSAD 101 (343)
T ss_pred H-HHHHHH----HHH---hCCCEEEECCcc
Confidence 4 444444 332 368899999974
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=70.95 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--------C--Ce-EEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--------G--YT-VTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--------g--~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~ 115 (351)
++||+|||+|.+|..+++.|.+. | .+ +.+++++.++.+.+...+...+++.+++++ +.|+|+.|++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 47999999999999999888653 2 34 446788876654332234566788999885 47999999854
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEE
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v 166 (351)
.....+.+. .++..|+.|+..... .....+++.+...+.++.+.
T Consensus 83 ~~~~~~~~~-------~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 83 IEPARELIL-------KALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred chHHHHHHH-------HHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 333333332 334577777754431 12334566666666677544
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=65.99 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccc--hhHHhcCCcc-cCCHHHhhc-----CCCEEEEecCChhH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKA--QPLLDIGAHL-ADSPHSLAS-----QSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~--~~~~~~g~~~-~~~~~~~~~-----~~DiIi~~vp~~~~ 118 (351)
++||+|||+|++|..+...+.+. +.++. ++|++++.. +..++.|+.. .++.+++++ +.|+||+|+|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 47899999999999988777753 45655 678887642 3334447765 467888874 58999999966554
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+ ... .. ...|+.+||.+.
T Consensus 84 ~e-~a~----~a---~eaGk~VID~sP 102 (302)
T PRK08300 84 VR-HAA----KL---REAGIRAIDLTP 102 (302)
T ss_pred HH-HHH----HH---HHcCCeEEECCc
Confidence 44 333 22 346788888775
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=53.68 Aligned_cols=61 Identities=18% Similarity=0.390 Sum_probs=47.8
Q ss_pred CeEEEEccChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH-hhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV-LLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v-~~~~~ 127 (351)
+|++|+|+|.+|..++..|.+. +.+|.+||| |++|.|++.+..+.+- +.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~~~~--- 74 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEEATA--- 74 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHHHHH---
Confidence 6899999999999999999998 568999988 9999999665544431 22
Q ss_pred CCcccCCCCCcEEEecC
Q 018694 128 SGALSGLRPGGIIVDMT 144 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s 144 (351)
.+.++.+|+++.
T Consensus 75 -----~~~~~~~v~~~a 86 (86)
T cd05191 75 -----KINEGAVVIDLA 86 (86)
T ss_pred -----hcCCCCEEEecC
Confidence 235677888763
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=65.54 Aligned_cols=87 Identities=22% Similarity=0.377 Sum_probs=61.3
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeEE-EEeCCcccch--hHHhcCCcc-cCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQ--PLLDIGAHL-ADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~--~~~~~g~~~-~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
+||+|||+|.+|..++..+.+ .++++. ++++++++.. ...+.|+.. .++.++++. +.|+|++|+|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 689999999999998777764 456755 6788887533 333447654 457788775 578999999777666654
Q ss_pred hhCCCCCcccCCCCCcEEEecC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.. .+..|+.+++.+
T Consensus 82 ~~--------al~aGk~VIdek 95 (285)
T TIGR03215 82 RL--------LAELGKIVIDLT 95 (285)
T ss_pred HH--------HHHcCCEEEECC
Confidence 43 234677787766
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00021 Score=56.40 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=70.0
Q ss_pred CeEEEEc----cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIG----TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG----~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++|+||| -+.+|..+...|.+.|++|+.++...+.+ .|...+.++.|.-...|++++|+ ++..+.++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~-~~~~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCV-PPDKVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEc-CHHHHHHHHH-
Confidence 3699999 68999999999999999999888765443 25778888888557899999999 8888888887
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
++... ..+.+++..+ ...+++.+.+.+.++.++
T Consensus 74 ---~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 74 ---EAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp ---HHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred ---HHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 66543 3455555444 334577777777788776
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=72.08 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-cCCccc-------CCHHHh-hcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLA-------DSPHSL-ASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-~g~~~~-------~~~~~~-~~~~DiIi~~vp~~~ 117 (351)
|||.|+|+|.+|..+++.|.+.|++|+++++++++.+.+.+ .++... ...+++ +.++|.+|++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 68999999999999999999999999999999998888766 333221 122333 568999999995433
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00027 Score=65.94 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCc--ccchhHHhc----------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTL--SKAQPLLDI----------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~--~~~~~~~~~----------g~~~~~~~~~~~~~~Di 108 (351)
+.||+|||+ |.+|..++..|...|. +++++|+++ ++++..... +..+..+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 479999998 9999999999998875 799999965 323222111 12333455567889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. ++..+..++.+++..+|
T Consensus 83 VVitAG~~~k~g~tR~dll~~Na~i~~~i~~----~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 83 ALLVGAFPRKPGMERADLLSKNGKIFKEQGK----ALNKVAKKDVKVLVVGN 130 (323)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCeEEEEeCC
Confidence 999884321 2455555 56665554777777775
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=68.34 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~D 107 (351)
|+||+|+|+|.||..+++.+.+. +++++ +++++++....+.. .++.+..+.+++..++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 57999999999999999988753 55765 44655533322211 23455567778778899
Q ss_pred EEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 108 iIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
+||.|+|+....+ ... . ++..|+.+|+.+
T Consensus 81 VVIdaT~~~~~~e-~a~----~---~~~aGk~VI~~~ 109 (341)
T PRK04207 81 IVVDATPGGVGAK-NKE----L---YEKAGVKAIFQG 109 (341)
T ss_pred EEEECCCchhhHH-HHH----H---HHHCCCEEEEcC
Confidence 9999995544433 333 2 233456666644
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00021 Score=66.67 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCcc--cchh----HHhc------CCcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLS--KAQP----LLDI------GAHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~--~~~~----~~~~------g~~~~~~~~~~~~~~D 107 (351)
.++||+|||+ |.+|..+|..|...|. ++.++|++++ +++. +... ...+..+..+.+.++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 4579999998 9999999999887654 7999999543 2221 1111 2334445557788999
Q ss_pred EEEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 108 VVFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 108 iIi~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+||++...+. .++++.. ++..+..++.++|..+|
T Consensus 83 iVVitaG~~~k~g~tR~dll~~Na~i~~~i~~----~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 83 VALLVGARPRGPGMERKDLLEANGAIFTAQGK----ALNEVAARDVKVLVVGN 131 (326)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHHhCCCCeEEEEeCC
Confidence 9999884321 2445555 56555556777777776
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=66.73 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=62.2
Q ss_pred EEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhc---------CCcc--cCCHHHhhcCCCEEEEecCChh-
Q 018694 52 IGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDI---------GAHL--ADSPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~---------g~~~--~~~~~~~~~~~DiIi~~vp~~~- 117 (351)
|+|||+|.+|..+|..|+..| .+++++|+++++++..... ...+ .++ .+.+.+||+||+|...+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 689999999999999999888 5899999998876544332 0112 233 456789999999996432
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++.. .+..+. ++.+++..+|
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~----~i~~~~-p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVIT----NLKKYG-PDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHH----HHHHhC-CCeEEEEccC
Confidence 1445555 555544 6777777776
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=67.07 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=61.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCccc--CCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLA--DSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~--~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||+|||+|.+|..+|..|...+. ++.++|+++++++...-. ...+. .+.++ +++||+||++...+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999988776 799999988765332221 12332 34444 78999999997432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. .++++.. .+..+ .++.++|..+|
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~----~I~~~-~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIP----ELAKY-SPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCeEEEEecC
Confidence 1 1334444 44443 46667777776
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00029 Score=64.70 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=83.9
Q ss_pred CCeEEEEccChhhHHHHHHHHH---CCCeEE-EEeCCcccchhHHhc-C---CcccCCHHHhhcCC--CEEEEecCChhH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN---AGYTVT-VFNRTLSKAQPLLDI-G---AHLADSPHSLASQS--DVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~---~g~~V~-~~dr~~~~~~~~~~~-g---~~~~~~~~~~~~~~--DiIi~~vp~~~~ 118 (351)
.-|+||+|+|.|+.-+++.|.- .+|+|+ +++++.+++..|+.. + .+.+++.++++++. |+|.+.+|.+++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 3689999999999999999864 467755 669999988888776 3 47788999999865 999999999998
Q ss_pred HHHHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 VRHVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+-++. -+ ..++ +++.-- .......+++.+..+.+|+.+.++
T Consensus 86 ~evv~l----~l----~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 86 YEVVML----AL----NKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHHH----HH----HcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 886665 22 2222 333311 133667778888888888888766
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00039 Score=70.04 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=57.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC--CHHHh-----hcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD--SPHSL-----ASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~--~~~~~-----~~~~DiIi~~vp~~~~~~~ 121 (351)
-+|.|+|+|.+|..+++.|.+.|++|+++|.|+++.+.+++.|... .. +.++. ++++|.++++++++.....
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 5799999999999999999999999999999999999988776432 11 11222 3589999999966655444
Q ss_pred Hhh
Q 018694 122 VLL 124 (351)
Q Consensus 122 v~~ 124 (351)
++.
T Consensus 498 iv~ 500 (558)
T PRK10669 498 IVA 500 (558)
T ss_pred HHH
Confidence 444
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=61.90 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeC----------CcccchhHHhc-C-------CcccCCHHHh-hcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNR----------TLSKAQPLLDI-G-------AHLADSPHSL-ASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr----------~~~~~~~~~~~-g-------~~~~~~~~~~-~~~~Di 108 (351)
.+||+|.|+|++|..+++.|.+.|..|+ +.|. +.+.+....++ | .... +.+++ -.+||+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 4799999999999999999999999988 6666 43343333332 2 1111 22332 247999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
++-|.+......+.+. ++ +-++|+...|. |-+ .+-.+.+.++|+.|++-
T Consensus 110 lip~a~~~~i~~~~~~----~l-----~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 110 LIPAALENQITADNAD----RI-----KAKIIVEAANG-PTT-PEADEILHERGVLVVPD 158 (227)
T ss_pred EEecCccCccCHHHHh----hc-----eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEECh
Confidence 9999965555555554 44 35578888887 333 56667778889988854
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.017 Score=54.36 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=115.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-----C--------------------CcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-----G--------------------AHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-----g--------------------~~~~~~~~~~ 102 (351)
|.+|.|+|+|..+--+|..+.+.+. .|-+++|...+.+.+.+. + -....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 5689999999999999999987665 699999987776555332 1 1234566777
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcC--CCcEEec-------cCCC
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALS-GLRPGGIIVDMTTSEPSLASELSAAASSK--NCSAIDA-------PVSG 172 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~~v~~-------pv~~ 172 (351)
..+-|.+|+|| +.++..+++. ++.. .+..=+.+|-+|-. -+...-+...+... .+.+++- -+..
T Consensus 81 ~g~WdtlILav-taDAY~~VL~----ql~~~~L~~vk~iVLvSPt-fGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 81 EGEWDTLILAV-TADAYLDVLQ----QLPWEVLKRVKSIVLVSPT-FGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cccccEEEEEe-chHHHHHHHH----hcCHHHHhhCCEEEEECcc-cchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 78899999999 8888888998 6654 34444455555542 12222333333332 3444432 1111
Q ss_pred Cc-h-----hhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHH------------HH-HHHHH------
Q 018694 173 GD-R-----GAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQ------------FA-KLANQ------ 223 (351)
Q Consensus 173 ~~-~-----~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~------------~~-kl~~n------ 223 (351)
.. . .+-+.. ++.|. +....+++..+++.+|. ...+...-.|. .+ +...|
T Consensus 155 ~~~~~~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~ 232 (429)
T PF10100_consen 155 GEQPNRVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEED 232 (429)
T ss_pred CCCcceehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCC
Confidence 10 0 011111 33332 44556778888888886 33332211111 10 00011
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 018694 224 -----------------ITIATTMVGLVEGMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 224 -----------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 256 (351)
.+..-+...+.|++.+..+.|++.=.+.+.+..
T Consensus 233 ~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~d 282 (429)
T PF10100_consen 233 GVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMND 282 (429)
T ss_pred CCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhcc
Confidence 111126677889999999999887555555543
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=65.97 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=62.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chhH----Hhc------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQPL----LDI------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~~----~~~------g~~~~~~~~~~~~~~Di 108 (351)
++||+|||+ |.+|..++..|...|. +++++|++++. ++.. ... .+.+..+..+.+.++|+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 369999999 9999999999998776 79999995432 2221 110 12334455567889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. ++..+..++.++|..+|
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~----~i~~~~~~~~iiivvsN 129 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGK----ALNDVASRDVKVLVVGN 129 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCeEEEEecC
Confidence 999984321 1445555 55555544667777775
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00019 Score=62.31 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||+|+|+|.||+.++..|++.|+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00044 Score=70.18 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC--CHHHh-----hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD--SPHSL-----ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~--~~~~~-----~~~~DiIi~~vp~~~~~~ 120 (351)
.++|.|+|+|.+|..+++.|.+.|++++++|.|+++++.+++.|..+ +. +.++. ++++|.++++++++....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999999999999988876443 11 12222 358999999997777666
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++. .+.. ..++..++...+
T Consensus 480 ~i~~----~~r~-~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIVE----LCQQ-HFPHLHILARAR 499 (601)
T ss_pred HHHH----HHHH-HCCCCeEEEEeC
Confidence 6665 4443 335544554443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00045 Score=63.09 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=69.0
Q ss_pred cccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc
Q 018694 16 AHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH 94 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~ 94 (351)
+++..|+ .++.+.+...... -.-.+|.|||.|. +|.+++..|.+.|..|+++++..
T Consensus 137 ~~~p~T~-~gii~~L~~~~i~----------l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------ 193 (283)
T PRK14192 137 AYGSATP-AGIMRLLKAYNIE----------LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------ 193 (283)
T ss_pred cccCCcH-HHHHHHHHHcCCC----------CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------
Confidence 6788888 7777766542111 1125799999998 99999999999999999998731
Q ss_pred ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 95 LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 95 ~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++.+.+.++|+||.|++++.- +. ...+.++.+++|+..
T Consensus 194 --~~L~~~~~~aDIvI~AtG~~~~----v~------~~~lk~gavViDvg~ 232 (283)
T PRK14192 194 --QNLPELVKQADIIVGAVGKPEL----IK------KDWIKQGAVVVDAGF 232 (283)
T ss_pred --hhHHHHhccCCEEEEccCCCCc----CC------HHHcCCCCEEEEEEE
Confidence 2455556899999999965442 21 123568899999874
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=56.15 Aligned_cols=101 Identities=21% Similarity=0.211 Sum_probs=62.2
Q ss_pred ccChhhHHHHHHHHHC----CCeEE-EEeCCcccchh-H--HhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhC
Q 018694 56 GTGVMGRSMCAHLLNA----GYTVT-VFNRTLSKAQP-L--LDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 56 G~G~mG~~ia~~L~~~----g~~V~-~~dr~~~~~~~-~--~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|+|.||+.++..|.+. +++|. +++|+ ..... . ...+.....+.+++++ +.|+||-|+ .+..+.+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t-~~~~~~~~~~- 77 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECT-SSEAVAEYYE- 77 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-S-SCHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECC-CchHHHHHHH-
Confidence 8999999999999876 45644 66887 22211 1 1124567789999888 899999998 6666666555
Q ss_pred CCCCcccCCCCCcEEEecCCCChh---HHHHHHHHHhcCCCcE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPS---LASELSAAASSKNCSA 165 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~---~~~~l~~~~~~~~~~~ 165 (351)
. .+..|..||..+.+.-. ..+++.+...+.+..+
T Consensus 78 ---~---~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 78 ---K---ALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp ---H---HHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred ---H---HHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 3 34588889988764222 3344555444445544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00034 Score=63.68 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=59.3
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-.+|.|||.|. +|..++..|.+.|..|+++++.. .++.+.+.++|+||.+++.+.-+..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~------ 217 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK------ 217 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH------
Confidence 36899999998 99999999999999999998642 3567788999999999977653322
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
..+.+++++||++..
T Consensus 218 ----~~vk~gavVIDvGi~ 232 (286)
T PRK14175 218 ----DVVKEGAVIIDVGNT 232 (286)
T ss_pred ----HHcCCCcEEEEcCCC
Confidence 234688999998853
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.005 Score=54.76 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=81.9
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe---c
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID---A 168 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~---~ 168 (351)
|+++++|..|+++++|++|+.+|.+.....+++ ++.+++.+|.+|.+.+++.+...-.+.+.+.++.+.+.+ +
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iik----ki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPa 203 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIE----KFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPG 203 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHH----HHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCC
Confidence 577888888999999999999999888788888 899999999999999999877666666666655555443 2
Q ss_pred cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEc
Q 018694 169 PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 169 pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+.+.+ |+ .+..-+ +++..+++.++.+..++ .+.+
T Consensus 204 aVPgt~-----Gq-~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 204 AVPEMK-----GQ-VYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCCCCC-----Cc-eecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 333332 34 232233 88889999999999988 4443
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00052 Score=63.73 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=46.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCc--ccchhHH----h----cC----CcccCCHHHhhcCCCEEEEe
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTL--SKAQPLL----D----IG----AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~--~~~~~~~----~----~g----~~~~~~~~~~~~~~DiIi~~ 112 (351)
|||+|||+ |.+|..++..|+..|+ +|+++|+++ ++++... + .+ +...++.+ .+.++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 79999998 9999999999999887 599999964 4332211 1 12 12233444 58899999999
Q ss_pred cC
Q 018694 113 VG 114 (351)
Q Consensus 113 vp 114 (351)
+.
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 95
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00086 Score=59.57 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCC-CeEE-EEeCCcccc-----hhH---HhcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAG-YTVT-VFNRTLSKA-----QPL---LDIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g-~~V~-~~dr~~~~~-----~~~---~~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||||+|.|+ |.||..+.+.+.+.. +++. .++|.+... ..+ -..|+.+.+++.....++|++|=.+ .|
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P 79 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TP 79 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cc
Confidence 3699999999 999999999998765 4533 557765422 111 1225666777777788999999999 66
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
..+.+.+. -.. ..+..+|.-+|+-. ...+.+.+... .+.++-+|++.
T Consensus 80 ~~~~~~l~----~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~--~v~vv~a~NfS 127 (266)
T COG0289 80 EATLENLE----FAL---EHGKPLVIGTTGFTEEQLEKLREAAE--KVPVVIAPNFS 127 (266)
T ss_pred hhhHHHHH----HHH---HcCCCeEEECCCCCHHHHHHHHHHHh--hCCEEEeccch
Confidence 76666665 222 23344444555544 33344444433 36777777773
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0062 Score=54.30 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=81.8
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec---
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA--- 168 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~--- 168 (351)
|+++++|..|+++++|++|+.+|.+.....+++ ++.+++.+|.+|.+.+++.+...-.+.+.+.++.+.+.+.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iik----kii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPa 201 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIK----KFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPG 201 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHH----HHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCC
Confidence 577888888999999999999999887788888 8999999999999999998776666666666555544432
Q ss_pred cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEc
Q 018694 169 PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 169 pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+.+.+ ++ .++.-+ +++..+++.++.+..++ ++.+
T Consensus 202 aVPgt~-----~q-~Yi~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 202 CVPEMK-----GQ-VYIAEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCC-----Cc-eEeecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 333332 23 333344 88899999999999988 4443
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=64.59 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=60.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHhc--CCccc---C--CHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLDI--GAHLA---D--SPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~~--g~~~~---~--~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+ |++|..+|..|...|. ++.++|++ +++. +..- ...+. . ++.+.++++|+||++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 69999999 9999999999998885 89999987 3221 2211 11222 2 234668899999999854
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.. .+..+ .++.++|..+|-
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~~----~i~~~-~p~a~vivvtNP 119 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLAT----AVAKA-CPKALILIISNP 119 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEccCc
Confidence 31 2344444 45444 567788888873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0008 Score=61.05 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhhhhcccCCCCCccchhhHHHH--
Q 018694 215 GQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD-- 288 (351)
Q Consensus 215 a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd-- 288 (351)
++.+||++|.+..+.+++++|++.+.+. .|++.+++.++.. .+...|+.++....-+...+...++-++.+..-
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 5789999999999999999999998884 7888888777655 556778888888776655553333444443221
Q ss_pred ----HHHHHHHHHhcCCCCcHHHHHH
Q 018694 289 ----LGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 289 ----~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
-.+..+.|-+.|+|+|++..+.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 2488999999999999776554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00048 Score=64.99 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=57.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-----C---Cccc-CCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-----G---AHLA-DSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-----g---~~~~-~~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|||+ |.+|..+.+.|.+. ++++. ++++....-+.+.+. + .... .+.+++..++|++|+|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 58999998 99999999999875 45777 545443222223211 1 1111 14455656899999999544
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
...+... .+. ..|..|||+|+.
T Consensus 80 ~s~~~~~----~~~---~~G~~VIDlS~~ 101 (346)
T TIGR01850 80 VSAELAP----ELL---AAGVKVIDLSAD 101 (346)
T ss_pred HHHHHHH----HHH---hCCCEEEeCChh
Confidence 4454554 332 367899999964
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00045 Score=58.61 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=29.7
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
||+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 69999999999999999999999 599999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00045 Score=65.11 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHC----------CCeEE-EEeCCcc----------cchhHHhc-C-Cc------ccCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA----------GYTVT-VFNRTLS----------KAQPLLDI-G-AH------LADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~----------g~~V~-~~dr~~~----------~~~~~~~~-g-~~------~~~~~ 99 (351)
++||+|+|+|.||..+++.|.+. +.+|+ ++|++.. .+..+.+. + +. ...+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 47999999999999999998765 34544 5575321 22222222 2 11 12377
Q ss_pred HHhhc--CCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEE
Q 018694 100 HSLAS--QSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAI 166 (351)
Q Consensus 100 ~~~~~--~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v 166 (351)
++++. +.|+|+.|+|+..+. +.... -+..++..|..||..++.. .....++.+...+.++.+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~----~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALS----HCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHH----HHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 77773 689999999754331 11111 1123345777777654421 1234456666555565443
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00015 Score=70.41 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=49.1
Q ss_pred CCeEEEEccChhhHHHHH--HHH----HCCCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEE
Q 018694 49 NTRIGWIGTGVMGRSMCA--HLL----NAGYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~--~L~----~~g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi 110 (351)
|+||+|||+|.||...+. .++ -.+.+|+++|+++++++.... .+ +..+++..+++.++|+||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 579999999999966554 443 245699999999887653211 12 344667778899999999
Q ss_pred EecCCh
Q 018694 111 SIVGYP 116 (351)
Q Consensus 111 ~~vp~~ 116 (351)
+++..+
T Consensus 81 ~ti~vg 86 (431)
T PRK15076 81 NAIQVG 86 (431)
T ss_pred EeeeeC
Confidence 999543
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00061 Score=65.86 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=65.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-------CC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-------GY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-------g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~Di 108 (351)
+-||+|||+ |.+|..+|..|+.. |. +++++|++.++++...-. .+.+..+..+.++++|+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 579999999 99999999999987 55 799999998876443211 23333455577889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. ++..+..++.++|..+|
T Consensus 180 VVitAG~prkpG~tR~dLl~~N~~I~k~i~~----~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGK----ALNEVASRNVKVIVVGN 227 (444)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhcCCCeEEEEcCC
Confidence 999885431 2444554 55554456777777776
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00071 Score=62.92 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=59.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH---CCCeEEEEeCCcccc---hhHHhcC--Ccc----cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN---AGYTVTVFNRTLSKA---QPLLDIG--AHL----ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~---~g~~V~~~dr~~~~~---~~~~~~g--~~~----~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+ |.+|.+++..|.. .+++++++|+++... -.+...+ ..+ .+++.+.++++|+||+|...+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 79999999 9999999988854 345899999985431 1222211 111 235456778999999999542
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .+++++. .+..+ .++.+++..+|-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~----~i~~~-~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVE----KVAKT-CPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEccCc
Confidence 1 2344444 44444 466777777763
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.001 Score=55.34 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=49.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-Cccc-CC-HHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-AHLA-DS-PHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-~~~~-~~-~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.||.|||.|.+|...++.|.+.|++|++++ ++..+.+.+.+ +... .. .++.+.++|+||.|+ ....+...+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-~d~e~N~~i 87 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-NQHAVNMMV 87 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECC-CCHHHHHHH
Confidence 689999999999999999999999999995 44444554432 1111 11 122357899999999 555544433
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00069 Score=63.04 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=48.3
Q ss_pred CCCCCCCeEEEEcc-ChhhHHHHHHHHHCC--CeEEEEeCCcccch--hHHhc--CCcc--cCC---HHHhhcCCCEEEE
Q 018694 44 PVCPTNTRIGWIGT-GVMGRSMCAHLLNAG--YTVTVFNRTLSKAQ--PLLDI--GAHL--ADS---PHSLASQSDVVFS 111 (351)
Q Consensus 44 ~~~~~~~kI~iIG~-G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~--~~~~~--g~~~--~~~---~~~~~~~~DiIi~ 111 (351)
|.-..|.||+|||+ |.+|..++..|+..+ .++.++|++....+ .+.+. ...+ .++ ..+.++++|+||+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVi 82 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLI 82 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEE
Confidence 33346789999999 999999999998555 48999999422211 11111 1122 222 1567889999999
Q ss_pred ecCC
Q 018694 112 IVGY 115 (351)
Q Consensus 112 ~vp~ 115 (351)
+...
T Consensus 83 taG~ 86 (321)
T PTZ00325 83 CAGV 86 (321)
T ss_pred CCCC
Confidence 9854
|
|
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=51.60 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHH--HHHHHh----cCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCC
Q 018694 229 TMVGLVEGMVYAHKAGLNVEL--FLNAIS----TGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLA 302 (351)
Q Consensus 229 ~~~~~~Ea~~la~~~Gi~~~~--~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~ 302 (351)
...++.|+..++++.|++.+. +.+.+. ..... ..+ ....+.++... .++.+. +++++.|+++|++
T Consensus 40 ~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~--~~S-M~~D~~~gr~t---Eid~i~---G~vv~~a~~~gv~ 110 (125)
T PF08546_consen 40 IRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPDN--RSS-MLQDIEAGRPT---EIDYIN---GYVVRLAKKHGVP 110 (125)
T ss_dssp HHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTTT----H-HHHHHHTTB-----SHHHTH---HHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCc--ccc-HHHHHHHcccc---cHHHHH---HHHHHHHHHHCCC
Confidence 567788999999999975432 333322 21110 011 11112222221 343333 8999999999999
Q ss_pred CcHHHHHHHHHHHH
Q 018694 303 LPGLALAQQLYLSL 316 (351)
Q Consensus 303 ~p~~~~~~~l~~~~ 316 (351)
+|.++.++++++..
T Consensus 111 ~P~~~~i~~lvk~~ 124 (125)
T PF08546_consen 111 TPVNETIYALVKAI 124 (125)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999998753
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00077 Score=63.30 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=66.7
Q ss_pred CCeEEEEccChhhHHHHHHHHH--------CCC--eEE-EEeCCccc-----c--hhHH---hc-C-Cc-c-------cC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN--------AGY--TVT-VFNRTLSK-----A--QPLL---DI-G-AH-L-------AD 97 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~--------~g~--~V~-~~dr~~~~-----~--~~~~---~~-g-~~-~-------~~ 97 (351)
++||+|+|+|++|..+++.|.+ .|. +|+ +.|++... + ..+. +. + +. . ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4799999999999999999876 464 333 44654222 1 1111 11 1 00 0 11
Q ss_pred CHHHhh--cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEec
Q 018694 98 SPHSLA--SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 98 ~~~~~~--~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~ 168 (351)
+.++++ .++|+||-|+ .+....+... . .+..+..+|..+++.. ...+++.+.....++.+.-.
T Consensus 82 ~~~ell~~~~~DVvVd~t-~~~~a~~~~~----~---al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~e 147 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVT-NDKNAHEWHL----E---ALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFE 147 (336)
T ss_pred CHHHHHhcCCCCEEEECC-CcHHHHHHHH----H---HHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEe
Confidence 566766 4789999999 5555555554 3 3457888887776411 23445555555566666543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00082 Score=61.81 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=46.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccC-CHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLAD-SPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~-~~~~~~~~~DiIi~~vp 114 (351)
+||+|||+|.+|.++|..|...+. ++.++|+++++.+...-. ...+.. ..-+.++++|+|+++..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 589999999999999999976654 899999996654332211 122333 12455789999999983
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=52.24 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=67.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChhHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPSDV 119 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~~~ 119 (351)
||.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+ |-.......+.+. ++++-+...+....-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999998 699999874332222222 2111111122111 234444444221111
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.... ..+.+-++||++... ......+.+.+...++.|+++...+
T Consensus 81 ~~~~--------~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DNLD--------DFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhHH--------HHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 123466788887766 5555667777777888888876654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00083 Score=62.70 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=61.2
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCc--ccchhHH----hc------CCcccCCHHHhhcCCCEEE
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTL--SKAQPLL----DI------GAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~--~~~~~~~----~~------g~~~~~~~~~~~~~~DiIi 110 (351)
||+|||+ |.+|..++..|...|. ++.++|+++ ++.+... +. +..+..+..+.++++|+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999997654 599999987 5432221 10 1233355667889999999
Q ss_pred EecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 111 SIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 111 ~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
++...+. .++++.. ++..+..++.++|..+|
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~----~i~~~~~~~~iiivvsN 127 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGE----ALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHH----HHHHhCCCCeEEEEeCC
Confidence 9874321 1445555 55555446666666665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=67.26 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C--CHHHh-----hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D--SPHSL-----ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~--~~~~~-----~~~~DiIi~~vp~~~~~~ 120 (351)
..+|-|+|+|.+|..+++.|.+.|+++++.|.|+++++.+++.|..+. . +..+. ++++|.+++|+++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 368999999999999999999999999999999999999988775431 1 11222 357999999996666665
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.++. .+... .++..++-..+. ..+. ..+.+.|+.++.-
T Consensus 480 ~i~~----~ar~~-~p~~~iiaRa~d-~~~~----~~L~~~Gad~v~~ 517 (621)
T PRK03562 480 QLVE----LVKEH-FPHLQIIARARD-VDHY----IRLRQAGVEKPER 517 (621)
T ss_pred HHHH----HHHHh-CCCCeEEEEECC-HHHH----HHHHHCCCCEEeh
Confidence 5555 34333 344344433332 3332 2333456666543
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00057 Score=63.30 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=47.4
Q ss_pred eEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc-----------CCcccCCHHHhhcCCCEEEEecC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI-----------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||+|||+|.+|..+|..|...+. +++++|+++++++...-. ...+....-+.++++|+||++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999988776 799999987764332111 11222233456789999999884
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00035 Score=58.88 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC--------------------------CHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD--------------------------SPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~--------------------------~~~~~ 102 (351)
..||.|+|.|..|..-+..+...|++|+++|.++++.+.+...+..... .+.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 3799999999999999999999999999999998877766555322111 23355
Q ss_pred hcCCCEEEEecC-ChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 103 ASQSDVVFSIVG-YPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 103 ~~~~DiIi~~vp-~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+..+|+||.++- .......++.. +....+.++.+|+|++.
T Consensus 100 i~~~d~vI~~~~~~~~~~P~lvt~---~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRAPRLVTE---EMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHH-SEEEEHHHBTTSS---SBEH---HHHHTSSTTEEEEETTG
T ss_pred HhhCcEEeeecccCCCCCCEEEEh---HHhhccCCCceEEEEEe
Confidence 567999997651 12222222221 22334569999999985
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00084 Score=58.40 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 579999999999999999999998 899999874
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00044 Score=60.69 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=46.7
Q ss_pred CeEEEEccChhhHHHHHHH--HHCCCeEE-EEeCCcccchhHHhcC--CcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHL--LNAGYTVT-VFNRTLSKAQPLLDIG--AHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L--~~~g~~V~-~~dr~~~~~~~~~~~g--~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.+|+|||+|.+|..++..+ ...|++++ ++|+++++..... .| +...+++++++. ++|.+++|+|....
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 6899999999999999864 34677766 6688876654322 12 222345666664 49999999965443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00086 Score=65.90 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC----------------C----------HHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD----------------S----------PHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~----------------~----------~~~ 101 (351)
..|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...|... .- + ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999998877766655432 00 0 234
Q ss_pred hhcCCCEEEEec-----CChh-HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 102 LASQSDVVFSIV-----GYPS-DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 102 ~~~~~DiIi~~v-----p~~~-~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.++|+||.|+ |.|. -.++.+ ..++++.+|||++..
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Lit~emv--------~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLITEEMV--------DSMKAGSVIVDLAAE 286 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeeehHHHH--------hhCCCCCEEEEeeeC
Confidence 457899999988 3331 233333 346789999999864
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=60.16 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=58.9
Q ss_pred CeEEEEccChh-hHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||.|.+ |..++..|.+.|..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~------- 217 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTA------- 217 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCH-------
Confidence 68999999998 999999999999999988642 24677888999999999976553332
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++.++||++..
T Consensus 218 ---~~ik~gavVIDVGin 232 (285)
T PRK14189 218 ---DMVKPGATVIDVGMN 232 (285)
T ss_pred ---HHcCCCCEEEEcccc
Confidence 346789999998843
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=58.17 Aligned_cols=32 Identities=19% Similarity=0.483 Sum_probs=29.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999999 59999987
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=57.75 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=50.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-CcccC--CHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLAD--SPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||.|||.|.+|...++.|.+.|++|++++++.. .+..+...+ +.... -.++.+.++|+||.|+ ....+...+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT-~d~elN~~i~ 88 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT-NDPRVNEQVK 88 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC-CCHHHHHHHH
Confidence 6899999999999999999999999999987642 223333332 22111 1123467899999999 5555544444
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00096 Score=62.70 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCe---EEEEeCCcccchhHHhcC--CcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYT---VTVFNRTLSKAQPLLDIG--AHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~---V~~~dr~~~~~~~~~~~g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
|+||+|+|+ |..|..+.+.|.+.+|+ +....+....-+.+.-.+ +.+.+...+...++|+||+|+ +.....+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~-g~g~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSA-GGSVSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECC-ChHHHHHH
Confidence 479999976 99999999999998885 355554433323322112 222221222346899999999 44455555
Q ss_pred hhCCCCCcccCCCCCcEEEecCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. .+ +..|..|||++..
T Consensus 80 ~~----~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 80 AP----KA---AAAGAVVIDNSSA 96 (334)
T ss_pred HH----HH---HhCCCEEEECCch
Confidence 55 33 2357799998853
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.017 Score=59.55 Aligned_cols=113 Identities=11% Similarity=0.176 Sum_probs=84.0
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhh--------cc
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGA--------KT 179 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~--------~~ 179 (351)
||+|+ +...+.+++. ++.+++.++++|.|+++......+.+.+.++.....|+.+ |+.|.+..- .+
T Consensus 1 vila~-Pv~~~~~~~~----~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAA-PVAQTGPLLA----RIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV 75 (673)
T ss_pred CEEEc-CHHHHHHHHH----HHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence 68999 8888888999 8989999999999999998777777766655333568887 888876432 35
Q ss_pred CceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHH
Q 018694 180 GTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITI 226 (351)
Q Consensus 180 g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~ 226 (351)
+..++++.. +++..+.++++++.+|. ++.+.....-..+-++..+..
T Consensus 76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH 126 (673)
T PRK11861 76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPH 126 (673)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHH
Confidence 666666643 67788999999999998 777776555555544444433
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=61.37 Aligned_cols=91 Identities=19% Similarity=0.329 Sum_probs=60.2
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccch--hHHhc--CCccc----C-CHHHhhcCCCEEEEecCChh-
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQ--PLLDI--GAHLA----D-SPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~--~~~~~--g~~~~----~-~~~~~~~~~DiIi~~vp~~~- 117 (351)
||+|||+ |++|..+|..|...+. ++.++|+++...+ .+... ...+. + ++.+.++++|+||++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 7999999 9999999999988876 8999999862211 11111 11222 1 23567899999999985431
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.. .+..+ .++.++|..+|-
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~----~i~~~-~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVA----AVAES-CPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHH----HHHHh-CCCeEEEEecCc
Confidence 2344444 44444 467778877773
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00079 Score=66.33 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CC---------------H----------HH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DS---------------P----------HS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~---------------~----------~~ 101 (351)
..||.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|.... +. . .+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 468999999999999999999999999999999999888877776521 11 0 11
Q ss_pred hhcCCCEEEEecCChh-----H-HHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 102 LASQSDVVFSIVGYPS-----D-VRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~-----~-~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+..+|+||.|+..+. . +++.+. .++++..|++++.
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~--------~mkpGgvIVdvg~ 286 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVA--------SMKPGSVIVDLAA 286 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHH--------hcCCCCEEEEEcc
Confidence 1246999999995322 2 244444 4568889999886
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=62.40 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|+ +++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 689999999999999999999998 799999874
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0012 Score=61.94 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeE---EEEeCCcccchh---HHhcCCcccC-CHHHhhcCCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTV---TVFNRTLSKAQP---LLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V---~~~dr~~~~~~~---~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
.|+||+|+|+ |.+|..+.+.|.+.+|++ ..+ .+.+...+ +....+.+.. +..+ ++++|++|+|+| ....
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p-~~~s 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAG-AAVS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCC-HHHH
Confidence 4589999987 999999999999877743 333 22222211 1111122221 2223 478999999995 4445
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+... .+. ..|..+||+|.-
T Consensus 80 ~~~v~----~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 80 RSFAE----KAR---AAGCSVIDLSGA 99 (336)
T ss_pred HHHHH----HHH---HCCCeEEECchh
Confidence 55555 332 357889999853
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0041 Score=60.35 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=68.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChh---HHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPS---DVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~---~~~~v~~~~ 126 (351)
.||.|||.|.+|.++|..|.+.|++|+++|++++.........-....+.+....++|+||.+.+.+. .+.++....
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g 83 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASH 83 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCC
Confidence 68999999999999999999999999999988664432110000112233444467898888774332 222222210
Q ss_pred C-----CCc-ccC--C-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 127 S-----SGA-LSG--L-RPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 127 ~-----~~i-~~~--l-~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
. ..+ ... . ....+-|.-|+|...+..-+...+...+.
T Consensus 84 ~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 84 IPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred CcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 0 000 000 1 22347777788877777777777765443
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=59.00 Aligned_cols=72 Identities=29% Similarity=0.445 Sum_probs=59.7
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-|. +|..++..|.+.|..|+++++. +.++.+.+.++|+||.+++++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~------- 218 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG------- 218 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH-------
Confidence 6899999999 9999999999999999999764 23677888999999999977664432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++++++||++.
T Consensus 219 ---~~vk~gavVIDvGi 232 (285)
T PRK10792 219 ---EWIKPGAIVIDVGI 232 (285)
T ss_pred ---HHcCCCcEEEEccc
Confidence 34568999999884
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=60.61 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=46.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccc--hhHHhc----CCc---ccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKA--QPLLDI----GAH---LADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~--~~~~~~----g~~---~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.||+|||+ |++|..++..|...+. ++.++|+++... ..+... .+. -.++..+.+.++|+||++...
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 69999999 9999999999997665 899999976221 111111 111 123346778999999999843
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=61.68 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=62.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-----eEE--EE--eCCcccchhHHhc----------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-----TVT--VF--NRTLSKAQPLLDI----------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-----~V~--~~--dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~Di 108 (351)
+-||+|||+ |.+|..+|..|...|. +|. ++ |++.++++...-. .+.+.++..+.++++|+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 479999999 9999999999987765 234 44 7777765432211 23334455577889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. .+..+..++.++|..+|
T Consensus 124 VVitAG~prkpg~tR~dll~~N~~I~k~i~~----~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 124 ALLIGAKPRGPGMERADLLDINGQIFADQGK----ALNAVASKNCKVLVVGN 171 (387)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhCCCCeEEEEcCC
Confidence 999874431 1444554 55555557777777776
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0018 Score=59.77 Aligned_cols=91 Identities=18% Similarity=0.337 Sum_probs=56.4
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-----C---Cccc-CCHHHh-hcCCCEEEEecCC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-----G---AHLA-DSPHSL-ASQSDVVFSIVGY 115 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-----g---~~~~-~~~~~~-~~~~DiIi~~vp~ 115 (351)
+|+||+|+|+ |.-|..+.+.|..... ++..+..+..+-+.+.+. | +... -+.+++ .++||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 4789999976 9999999999987543 666665443222233322 1 1111 123333 4469999999966
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
....+ ... .+. .++..|||+|+-
T Consensus 81 g~s~~-~v~----~l~---~~g~~VIDLSad 103 (349)
T COG0002 81 GVSAE-LVP----ELL---EAGCKVIDLSAD 103 (349)
T ss_pred hhHHH-HHH----HHH---hCCCeEEECCcc
Confidence 55443 444 332 356679999984
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=60.84 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCCCeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcC-------CcccCCHH-HhhcCCCEEEEecCCh
Q 018694 47 PTNTRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIG-------AHLADSPH-SLASQSDVVFSIVGYP 116 (351)
Q Consensus 47 ~~~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~-~~~~~~DiIi~~vp~~ 116 (351)
.+++||+|+|+ |..|..+.+.|.+. .++|+.+.++...-+.+.... .....+.+ +.++++|+||+|+ +.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al-p~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL-PH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC-CH
Confidence 45679999987 99999999999887 568888876544333322211 11111122 2247899999999 55
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
....++.. .+ ..+..|||+++.
T Consensus 115 ~~s~~i~~----~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 115 GTTQEIIK----AL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHH----HH----hCCCEEEEcCch
Confidence 56666665 43 357889999964
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=59.56 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=61.1
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCC-------CeEEEEeCCccc--chhH----Hh------cCCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAG-------YTVTVFNRTLSK--AQPL----LD------IGAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g-------~~V~~~dr~~~~--~~~~----~~------~g~~~~~~~~~~~~~~Di 108 (351)
+.||+|+|+ |.+|..++..|...+ .+|.++|+++.. ++.. .+ ..+....+..+.++++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 368999999 999999999998744 589999996532 2211 10 012234565677889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. .+..+..++.++|..+|
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~----~i~~~~~~~~iiivvsN 129 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGE----ALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhCCCCeEEEEecC
Confidence 999884321 1234444 55555456777777776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=56.07 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=48.7
Q ss_pred EEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecCC
Q 018694 52 IGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 52 I~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp~ 115 (351)
|.|+|+ |.+|..+++.|.+.|++|++..|++++.+. ..++.. .++..+++.++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 688986 999999999999999999999999987765 333221 12335667799999999964
|
... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0019 Score=53.70 Aligned_cols=74 Identities=24% Similarity=0.516 Sum_probs=52.1
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.+++.|||-+. +|..++..|.+.|..|++++... .++++.++++|+||.+++.+..++.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~------ 95 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKA------ 95 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-G------
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecccccccc------
Confidence 36899999875 99999999999999999988652 4667778899999999977654332
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++.++||+...
T Consensus 96 ----~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 96 ----DWIKPGAVVIDVGIN 110 (160)
T ss_dssp ----GGS-TTEEEEE--CE
T ss_pred ----ccccCCcEEEecCCc
Confidence 245799999998854
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0032 Score=61.71 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=52.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--CCcc-cC---CHH----HhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--GAHL-AD---SPH----SLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--g~~~-~~---~~~----~~~~~~DiIi~~vp~~ 116 (351)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... .. +.+ ..+.++|.||++++..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 5789999999999999999999999999999999988887765 3322 11 222 1235789999888543
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=60.13 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=60.0
Q ss_pred EEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCChh----
Q 018694 54 WIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYPS---- 117 (351)
Q Consensus 54 iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~~---- 117 (351)
|||+|.+|..+|..|...+. ++.++|++.++++..... ...+..+..+.++++|+||++...+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999988776 799999987765443221 12333344567889999999885421
Q ss_pred -----------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 -----------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 -----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++.. .+..+ .++.+++..+|
T Consensus 81 ~R~dll~~N~~i~~~~~~----~i~~~-~p~~~vivvsN 114 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVP----EVVKS-GFDGIFLVATN 114 (299)
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEeCC
Confidence 1444555 55554 46777777776
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=49.98 Aligned_cols=73 Identities=22% Similarity=0.238 Sum_probs=53.9
Q ss_pred CeEEEEccChhhHHHHHHH-HHCCCe-EEEEeCCcccchhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHL-LNAGYT-VTVFNRTLSKAQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L-~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~~ 124 (351)
.|+.|+|+|++|.+++..+ ...|+. +.++|.++++..... .|+.++.+.+++.+. .|+-++|+ ++....+++.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~V-P~~~a~~~~~ 80 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITV-PAEAAQEVAD 80 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEc-CHHHHHHHHH
Confidence 5899999999999987544 346776 557799988765322 267788788877665 99999999 6666666666
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=61.01 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHC------C--CeEE-EEeCCcccch-------hH---HhcC-C--cccC--CHHHhh-c
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA------G--YTVT-VFNRTLSKAQ-------PL---LDIG-A--HLAD--SPHSLA-S 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~------g--~~V~-~~dr~~~~~~-------~~---~~~g-~--~~~~--~~~~~~-~ 104 (351)
|||+|||+|++|..+++.|.+. | .+|+ ++|++..... .+ .++| + .... +.+++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 3433 5566542221 11 1111 1 0112 445543 4
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAI 166 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v 166 (351)
++|++|-|+|....-..... -+..++..|..||..+.+... ...++.+...+.++.+.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~----~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKN----LYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHHH----HHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 68999999953321111111 223445688888877764221 23455555555565543
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=58.28 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=71.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-----chhHHhcCCcccC--CHHHhhcCCCEEEEecCCh---hHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-----AQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYP---SDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-----~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~---~~~ 119 (351)
+||+|+|.|.-|.++|+.|.+.|++|+++|+++.. .+.+...|+.... ...+.+.++|+||..-.-+ ..+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~ 94 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL 94 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence 68999999999999999999999999999987531 1345555765532 2234457899888763111 223
Q ss_pred HHHhhCCCCCcc-------cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPSSGAL-------SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~~~i~-------~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
..+..... .+. .......+-|.-|+|...+..-+...+...+...
T Consensus 95 ~~a~~~~i-~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 95 VKAKEEGA-YITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred HHHHHcCC-cEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 32222110 111 1112245677777787777776777776555433
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=57.72 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=58.6
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-+. +|..++..|.+.|..|++++.. +.++.+...++|+||.++.++..+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~~------- 223 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIKA------- 223 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccCH-------
Confidence 6899999999 9999999999999999999843 23567778899999999977654322
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
..++++.++||++.
T Consensus 224 ---~~vk~gavVIDvGi 237 (287)
T PRK14176 224 ---DMVKEGAVIFDVGI 237 (287)
T ss_pred ---HHcCCCcEEEEecc
Confidence 24568999999874
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0049 Score=57.49 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=42.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||.|||+|.||...+++|.+.|. +|++++|+.... .+.+. . ....+...++|+||.|+
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~--~--~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTV--V--REELSFQDPYDVIFFGS 234 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhh--h--hhhhhcccCCCEEEEcC
Confidence 689999999999999999999996 699999997531 11110 0 01113346899999973
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0025 Score=59.98 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=55.1
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCe---EEEE--eCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYT---VTVF--NRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~---V~~~--dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+||+|+|+ |..|..+.+.|.+.+|+ +..+ .|+..+.-.+....+.+.....+.+.++|+||+|+|. ....+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~-~~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGG-SISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCc-HHHHHH
Confidence 479999976 99999999999988883 3333 3333222111111122222222445789999999944 455555
Q ss_pred hhCCCCCcccCCCCCcEEEecCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.. .+. ..+..|||+|.
T Consensus 86 ~~----~~~---~~g~~VIDlS~ 101 (344)
T PLN02383 86 GP----IAV---DKGAVVVDNSS 101 (344)
T ss_pred HH----HHH---hCCCEEEECCc
Confidence 54 332 36889999984
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0019 Score=60.33 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=61.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-C-CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-G-YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-g-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.++|.|+|+ |.||+.+++.|... | .++++++|+.+++..+..+ +.....+.++.+.++|+|+.++.-+..+ ++.
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I~ 232 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EID 232 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cCC
Confidence 368999998 89999999999854 4 4899999998877776554 1112235677888999999888332211 011
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. ..+.++.+++|++-
T Consensus 233 -----~-~~l~~~~~viDiAv 247 (340)
T PRK14982 233 -----P-ETLKKPCLMIDGGY 247 (340)
T ss_pred -----H-HHhCCCeEEEEecC
Confidence 0 12357778888773
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0016 Score=60.64 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=49.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
|||.|.| +|.+|+.++..|.+.||+|.+.+|++++...+...++.. ..+..++++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 6899998 599999999999999999999999876654444334332 1234566788999998763
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0065 Score=59.94 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-HhcCCcccC--CHHHhhcCCCEEEEec--CC-hhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-LDIGAHLAD--SPHSLASQSDVVFSIV--GY-PSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-~~~g~~~~~--~~~~~~~~~DiIi~~v--p~-~~~~~~v 122 (351)
++||.|+|+|..|.+++..|.+.|++|+++|++......+ .+.|+.... ...+.+.++|+||..- |+ ...+...
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a 94 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDA 94 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHH
Confidence 4689999999999999999999999999999876544333 333665532 2334456789887653 22 1223222
Q ss_pred hhCCCCCccc------------CC--CCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 123 LLHPSSGALS------------GL--RPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 123 ~~~~~~~i~~------------~l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
-.... .+.. .. ....+-|.-|+|...+..-+...+...+..
T Consensus 95 ~~~gi-~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~ 149 (473)
T PRK00141 95 QSQGL-EVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFA 149 (473)
T ss_pred HHCCC-ceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCc
Confidence 21100 0110 01 123466777778777776677777654443
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0036 Score=57.87 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
+|+||+|||+ |..|..+.+.|.+..+ ++.....+..+ . . .+.++...++|++|+|+|. ....+...
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~-~~s~~~~~- 68 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPD-DAAREAVA- 68 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCH-HHHHHHHH-
Confidence 4689999985 9999999999987653 44433322211 1 1 2334555789999999954 44554555
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++. ..+..|||+|.
T Consensus 69 ---~~~---~~g~~VIDlSa 82 (313)
T PRK11863 69 ---LID---NPATRVIDAST 82 (313)
T ss_pred ---HHH---hCCCEEEECCh
Confidence 433 36889999984
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=59.18 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=58.4
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chhHH----h------cCCcccCCHHHhhcCCCEEE
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQPLL----D------IGAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~~~----~------~g~~~~~~~~~~~~~~DiIi 110 (351)
||+|||+ |.+|..++..|...+. ++.++|++++. ++... + .++...++..+.+.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999987554 59999996542 21111 0 01222224456788999999
Q ss_pred EecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 111 SIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 111 ~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
++...+. .++++.. ++..+..++.++|..+|
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~----~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGR----ALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCeEEEEeCC
Confidence 9884421 1344444 55554446667776665
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00093 Score=60.52 Aligned_cols=92 Identities=22% Similarity=0.397 Sum_probs=67.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCc---cc---CCHHHhhcCCCEEEEec--CChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAH---LA---DSPHSLASQSDVVFSIV--GYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~---~~---~~~~~~~~~~DiIi~~v--p~~~~~~ 120 (351)
-||.|||.|-+|+.-|+....-|.+|++.|+|.++++.+-.. +.+ .. .++++.+..+|++|-+| |...+-+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 589999999999999999888899999999999888776554 222 12 24567788999999887 2211111
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
=+.+ ++...+.++.+|||+.-
T Consensus 249 Lvt~----e~vk~MkpGsVivDVAi 269 (371)
T COG0686 249 LVTR----EMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ehhH----HHHHhcCCCcEEEEEEE
Confidence 1122 44456779999999875
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=57.94 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=72.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC--CHHHhhcCCCEEEEecCChh---HHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPS---DVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~---~~~~v~~ 124 (351)
.||.|+|+|..|.+.++.|...|++|+++|+.++..+.+.+.|+.... ...+.+.++|+||.+-.-+. .+...-.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~ 92 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAA 92 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHH
Confidence 589999999999999999999999999999876665555555765532 23445678898888663222 2222111
Q ss_pred CCC-----CCcc-cC-----C--CCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 125 HPS-----SGAL-SG-----L--RPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~-----~~i~-~~-----l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
... .++. .. . ....+-|.-|+|...+..-+...+...+..
T Consensus 93 ~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 93 AGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred CCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 000 0010 00 0 113466777788777777677777655543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0033 Score=58.44 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=62.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC-----CH-HHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD-----SP-HSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~-----~~-~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|+|+|+|.+|..-.+.....|.+|+.+|+++++.+..++.|....- +. +++-...|+||.+++ +..+...+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l 246 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL 246 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH
Confidence 689999999999888887777899999999999998888877643211 11 222223899999996 77777666
Q ss_pred hCCCCCcccCCCCCcEEEecCC
Q 018694 124 LHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. . ++++..++....
T Consensus 247 ~----~----l~~~G~~v~vG~ 260 (339)
T COG1064 247 K----A----LRRGGTLVLVGL 260 (339)
T ss_pred H----H----HhcCCEEEEECC
Confidence 5 2 345555555443
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0014 Score=55.00 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCCeEEEEccChhhHHHHHHH--HHCCCe-EEEEeCCcccchhHHhcCCcc--cCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHL--LNAGYT-VTVFNRTLSKAQPLLDIGAHL--ADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L--~~~g~~-V~~~dr~~~~~~~~~~~g~~~--~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
.|.++.|||+|++|.+++..- .+.|++ +.++|.+++.+...... +.+ .+++++.++ +.|+.|+|| +.....
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~-v~V~~~d~le~~v~~~dv~iaiLtV-Pa~~AQ 160 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD-VPVYDLDDLEKFVKKNDVEIAILTV-PAEHAQ 160 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC-eeeechHHHHHHHHhcCccEEEEEc-cHHHHH
Confidence 357899999999999999863 356776 45779998866543322 333 345555555 789999999 555555
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
++++
T Consensus 161 ~vad 164 (211)
T COG2344 161 EVAD 164 (211)
T ss_pred HHHH
Confidence 5555
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.26 Score=45.21 Aligned_cols=200 Identities=17% Similarity=0.174 Sum_probs=116.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------------------C----CcccCCHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------------------G----AHLADSPHSL 102 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------------------g----~~~~~~~~~~ 102 (351)
+|.++.++|+|...--+|.-+...|. ++-+++|-..+-+.+.+. | -....+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 46789999999999999999987664 788888865554444331 1 0224567777
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCccc-CCCCCc--EEEecCCCChhHHHHHHHHHhcCCCcEEe------------
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALS-GLRPGG--IIVDMTTSEPSLASELSAAASSKNCSAID------------ 167 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~-~l~~~~--~ii~~s~~~~~~~~~l~~~~~~~~~~~v~------------ 167 (351)
..+-+.+|+|| +.++..++++ ++-. .+..-+ ++|+-+-|+-...+.....+. ..+.+++
T Consensus 83 ~~dwqtlilav-~aDaY~dvlq----qi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id 156 (431)
T COG4408 83 VGDWQTLILAV-PADAYYDVLQ----QIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYID 156 (431)
T ss_pred hchhheEEEEe-ecHHHHHHHh----cCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeec
Confidence 78889999999 7788888998 6653 233333 344333343334444444443 3333333
Q ss_pred c--cCCCCchhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHH-------------HH-------
Q 018694 168 A--PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAK-------------LA------- 221 (351)
Q Consensus 168 ~--pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~k-------------l~------- 221 (351)
. |+..-..+..+ -++.|. +....+.+..+++..|. +..+...-.+.... ..
T Consensus 157 ~~~p~~alTkavKk---riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~ 233 (431)
T COG4408 157 AEQPNRALTKAVKK---RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYP 233 (431)
T ss_pred ccCcchHHHHHHhH---heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCC
Confidence 2 22211111111 133332 55666778888888775 43333221111100 00
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 018694 222 ----------------NQITIATTMVGLVEGMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 222 ----------------~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 256 (351)
...+..-+...+.|.+.+..+.|++.=.+.+.+..
T Consensus 234 ~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~d 284 (431)
T COG4408 234 EQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLND 284 (431)
T ss_pred cCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhcc
Confidence 11122226677789999999999987666665543
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=56.79 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc----hhHHhcCCcccC--CHHHhhcCCCEEEEec--C-ChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA----QPLLDIGAHLAD--SPHSLASQSDVVFSIV--G-YPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~----~~~~~~g~~~~~--~~~~~~~~~DiIi~~v--p-~~~~~ 119 (351)
+|||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...++.+.. ...+...++|+|+..= | ....+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 5899999999999999999999999999999776551 122233443322 1124456788887742 1 11223
Q ss_pred HHHhhCCC-----CCcccCC--CCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCc
Q 018694 120 RHVLLHPS-----SGALSGL--RPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGD 174 (351)
Q Consensus 120 ~~v~~~~~-----~~i~~~l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~ 174 (351)
+.+..... .++.... ...-+-|.-+||...++.-+...+...|....-+.++|.+
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 33322110 0111111 2335677788888887777777777767666555555443
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0048 Score=59.20 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCC----------cccchhHHhc-C-------CcccCCHHHh-hcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRT----------LSKAQPLLDI-G-------AHLADSPHSL-ASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~----------~~~~~~~~~~-g-------~~~~~~~~~~-~~~~Di 108 (351)
-+||+|.|+|++|...++.|.+.|..|+ +.|.+ .+.+....++ + .... +.+++ ..+||+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 3789999999999999999999999988 66765 2222222222 1 1112 22332 358999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
++-|--...-.++.+. ++ +-++|+...|+. .+ .+-.+.+.++|+.|+.-
T Consensus 285 liP~Al~~~I~~~na~----~i-----~ak~I~egAN~p-~t-~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 285 LIPAALGGVINKENAA----DV-----KAKFIVEAANHP-TD-PEADEILRKKGVVVLPD 333 (410)
T ss_pred EeeccccccCCHhHHH----Hc-----CCcEEEeCCCCC-CC-HHHHHHHHHCCcEEECh
Confidence 9888733333333333 22 466899988884 33 35567777889988854
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0087 Score=52.12 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=48.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-Cccc--CCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLA--DSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~--~~~~~~~~~~DiIi~~vp~~ 116 (351)
.||.|||.|.+|..-++.|.+.|.+|++++.+.. .++.+.+.| +... .-..+.+..+++||.|+..+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 5899999999999999999999999999987643 334444443 2221 11134467899999998444
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0036 Score=56.88 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=57.9
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-| .+|..++..|.+.|..|++++... .++.+.++++|+||.+++++.-+..
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~------- 216 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKA------- 216 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCH-------
Confidence 689999999 999999999999999999985421 2456778899999999977654332
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++.+|.++||++..
T Consensus 217 ---~~vk~GavVIDvGi~ 231 (285)
T PRK14191 217 ---SMVKKGAVVVDIGIN 231 (285)
T ss_pred ---HHcCCCcEEEEeecc
Confidence 234689999998843
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.024 Score=55.50 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=69.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc----chhHHhcCCccc--CCHHHhhcC-CCEEEEec--CC-hhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK----AQPLLDIGAHLA--DSPHSLASQ-SDVVFSIV--GY-PSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~----~~~~~~~g~~~~--~~~~~~~~~-~DiIi~~v--p~-~~~~ 119 (351)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.|+... ....+.... +|+||... |+ ...+
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~ 85 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMV 85 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHH
Confidence 57999999999999999999999999999986533 233445565543 233444444 89887754 22 2223
Q ss_pred HHHhhCCCCCcc------cC-CCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 120 RHVLLHPSSGAL------SG-LRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 120 ~~v~~~~~~~i~------~~-l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..+..... .+. .. .....+-|.-|+|...+..-+...+...+.
T Consensus 86 ~~a~~~~i-~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~ 135 (447)
T PRK02472 86 EKALEKGI-PIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQ 135 (447)
T ss_pred HHHHHCCC-cEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence 22222100 111 11 133457777777877777767777765443
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0056 Score=49.47 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=61.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPS- 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~- 117 (351)
.||.|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |........+.+. ++++=+.+.+...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 589999999999999999999999 799999863222221111 2111111112111 2333344442222
Q ss_pred --HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 118 --DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 118 --~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
...+.+ ..-++||++... ......+.+.+...+..++.+...
T Consensus 83 ~~~~~~~~-----------~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 83 EENIEELL-----------KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp HHHHHHHH-----------HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cccccccc-----------cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEee
Confidence 222222 233577776544 555556777777777777776444
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0079 Score=58.84 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=72.4
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|+|||+ |.+|..+.++|.+.|| +|+.++...+. -.|+..+.+.+++-...|++++|+ ++..+.+++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~v-p~~~~~~~l 81 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVV-PAKYVPQVV 81 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEec-CHHHHHHHH
Confidence 57999999 8899999999999998 56555554322 237888999999888899999999 777777777
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChh-------HHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPS-------LASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~~~~~~v 166 (351)
+ ++... .-+.++| ++.+.+. ..+++.+..++.+++++
T Consensus 82 ~----e~~~~-gv~~~vi-~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 82 E----ECGEK-GVKGAVV-ITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred H----HHHhc-CCCEEEE-ECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 7 55442 2233333 3443222 23456666655666655
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0068 Score=51.78 Aligned_cols=86 Identities=24% Similarity=0.226 Sum_probs=60.0
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-C--ccc--CC----HHHhhcCCCEEEEecCChhH
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-A--HLA--DS----PHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-~--~~~--~~----~~~~~~~~DiIi~~vp~~~~ 118 (351)
-++|.|||-+. +|..++..|.+.|..|+++|.+.-. .+...+ . ..+ .+ ..+.++++|+||.+++++..
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~--~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~ 139 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQ--VFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNY 139 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccc--ccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCC
Confidence 36899998754 6999999999999999999865321 111100 0 011 12 56788999999999987665
Q ss_pred -HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 119 -VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 119 -~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.. +.+++|+++||++..
T Consensus 140 ~i~~----------d~ik~GavVIDVGi~ 158 (197)
T cd01079 140 KVPT----------ELLKDGAICINFASI 158 (197)
T ss_pred ccCH----------HHcCCCcEEEEcCCC
Confidence 332 234689999998854
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0058 Score=57.80 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=55.4
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh---------------cCCccc-CCHHHhhcCCCEE
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD---------------IGAHLA-DSPHSLASQSDVV 109 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~---------------~g~~~~-~~~~~~~~~~DiI 109 (351)
+|+||+|+| .|.+|..+.+.|.+... +++.+.+++........ ..+.+. .++++ ..++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEE
Confidence 358999997 89999999999987544 77777555433221111 011221 23333 4789999
Q ss_pred EEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 110 i~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
|.|+|.. ...+... .+. ..+..+||.+.
T Consensus 81 f~a~p~~-~s~~~~~----~~~---~~G~~vIDls~ 108 (349)
T PRK08664 81 FSALPSD-VAGEVEE----EFA---KAGKPVFSNAS 108 (349)
T ss_pred EEeCChh-HHHHHHH----HHH---HCCCEEEECCc
Confidence 9999554 3344444 332 35677888885
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.082 Score=47.45 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=67.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCc-----c-----cchhH---Hhc-C------------CcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTL-----S-----KAQPL---LDI-G------------AHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~-----~-----~~~~~---~~~-g------------~~~~~~~~~ 101 (351)
..||.|-|.|++|...++.|.+.|..|+ +.|.+- + .++.+ .+. + .... +.++
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~ 116 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKK 116 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcc
Confidence 3689999999999999999999999888 556321 1 11111 111 1 1222 2333
Q ss_pred h-hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 102 L-ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~-~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+ ..+||+++-|--...-..+... .+.. .+-++|+...|+ |.+. +-.+.+.++|+.|++-
T Consensus 117 ~~~~~~DIliPcAl~~~I~~~na~----~i~~--~~ak~I~EgAN~-p~t~-~a~~~L~~rGI~vvPD 176 (254)
T cd05313 117 PWEVPCDIAFPCATQNEVDAEDAK----LLVK--NGCKYVAEGANM-PCTA-EAIEVFRQAGVLFAPG 176 (254)
T ss_pred hhcCCCcEEEeccccccCCHHHHH----HHHH--cCCEEEEeCCCC-CCCH-HHHHHHHHCCcEEECc
Confidence 3 3479999888733322222222 2211 145588888887 4444 5667777889988854
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0062 Score=55.23 Aligned_cols=73 Identities=25% Similarity=0.437 Sum_probs=58.2
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-+ .+|..++..|.+.|..|+++... +.++.+.++++|+||++++++.-+..
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~~------- 216 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLITE------- 216 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccCH-------
Confidence 689999998 88999999999999999988532 13567778999999999987665442
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 217 ---~~vk~gavvIDvGin 231 (281)
T PRK14183 217 ---DMVKEGAIVIDIGIN 231 (281)
T ss_pred ---HHcCCCcEEEEeecc
Confidence 234689999998743
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=52.21 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=66.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |-..+....+.+. ++++-+.+.+..-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~ 104 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLD 104 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence 589999999999999999999998 799999875433333322 2111111111111 45555555522111
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
-+. +. ..+..-++||+++-. +..-..+.+.....++.++.+...+
T Consensus 105 ~~~-~~-------~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 105 DAE-LA-------ALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred HHH-HH-------HHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111 11 122345688877654 5555556666667788888764443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0085 Score=56.37 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=31.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 689999999999999999999999 899999874
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0056 Score=57.46 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=55.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH-CCCe---EEEEeC--CcccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN-AGYT---VTVFNR--TLSKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~-~g~~---V~~~dr--~~~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
+||+|||+ |..|..+.+.|.+ ..++ +.++.. +..+.-.+..+.+.+.. +.++ ..+.|++|+|+ +.....+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~-~~~~s~~ 83 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSA-GGEVSRQ 83 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECC-ChHHHHH
Confidence 79999988 9999999999995 6666 544432 22221122222223222 3333 47899999999 5555565
Q ss_pred HhhCCCCCcccCCCCCcEEEecCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.. .+ ...|..|||++.
T Consensus 84 ~~~----~~---~~~G~~VID~Ss 100 (347)
T PRK06728 84 FVN----QA---VSSGAIVIDNTS 100 (347)
T ss_pred HHH----HH---HHCCCEEEECch
Confidence 665 33 246889999884
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.018 Score=56.65 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=69.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CCh-----hHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYP-----SDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~-----~~~~~v 122 (351)
+||.|||+|..|.+.|..|.+.|++|.++|+.......+...|+.......+.+.++|+||..- |+. ..+...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a 89 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLA 89 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHH
Confidence 5899999999999999999999999999997755444455557654332223346789877522 111 123333
Q ss_pred hhCCCCCcc------cCC------CCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 123 LLHPSSGAL------SGL------RPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 123 ~~~~~~~i~------~~l------~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
..... .+. ... ....+-|.-|+|...+..-+...+...+..+
T Consensus 90 ~~~gi-~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 90 RAAGV-EVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred HHcCC-cEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 22100 001 111 2234667777787777766777776555444
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=56.41 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=68.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc-ccc----hhHHhcCCcc--cCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL-SKA----QPLLDIGAHL--ADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~----~~~~~~g~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
++|.|+|.|.+|.++|..|++.|++|+++|++. +.+ +.+.+.|+.. .+..++....+|+||.++..+.....+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence 689999999999999999999999999999975 222 2233335433 223334556799999987422221111
Q ss_pred --hhCCCCCcc-------cCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 123 --LLHPSSGAL-------SGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 123 --~~~~~~~i~-------~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+......+. .......+-|.-|+|...+.+-+...+...+
T Consensus 86 ~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 86 VQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred HHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 110000010 1112344666667777777666666665544
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0086 Score=58.01 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=71.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEE-e----------CCcccchhHHhc------------CCcccCCHHHhh-c
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVF-N----------RTLSKAQPLLDI------------GAHLADSPHSLA-S 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~-d----------r~~~~~~~~~~~------------g~~~~~~~~~~~-~ 104 (351)
.+||+|.|.|++|...|+.|.+.|..|+.+ | .+.+.+....+. +.... +.+++. .
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~ 310 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSV 310 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcccccc
Confidence 479999999999999999999999998876 7 343333222221 11111 233332 3
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+||+++-|........+... .+.+ .+-++|+...|+ |.+ .+-.+.+.++|+.|+.-
T Consensus 311 d~DVliPaAl~n~It~~~a~----~i~~--~~akiIvEgAN~-p~t-~~A~~~L~~rGI~~vPD 366 (445)
T PRK09414 311 PCDIALPCATQNELDEEDAK----TLIA--NGVKAVAEGANM-PST-PEAIEVFLEAGVLFAPG 366 (445)
T ss_pred CCcEEEecCCcCcCCHHHHH----HHHH--cCCeEEEcCCCC-CCC-HHHHHHHHHCCcEEECc
Confidence 79999999955544444444 3321 144688888887 433 35566777889888854
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=47.68 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=57.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|+|- ...|..++..|.+.|..|+.++++. .++++.++++|+|+.+++.+..++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~i~-------- 86 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEKVP-------- 86 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCccC--------
Confidence 68999977 6679999999999999999998642 266778899999999997663322
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..++++|++++|....
T Consensus 87 --~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 87 --TEWIKPGATVINCSPT 102 (140)
T ss_pred --HHHcCCCCEEEEcCCC
Confidence 1346799999987744
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0044 Score=54.90 Aligned_cols=63 Identities=37% Similarity=0.493 Sum_probs=47.9
Q ss_pred EEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcc--cchhHHhcCCccc-------CCHHHhhcCCCEEEEecC
Q 018694 52 IGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLS--KAQPLLDIGAHLA-------DSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 52 I~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~--~~~~~~~~g~~~~-------~~~~~~~~~~DiIi~~vp 114 (351)
|.|+|+ |.+|..++..|.+.+++|.+..|++. ..+.+.+.|+.+. .++.++++.+|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789986 99999999999999999999999864 3555666665431 233455678888888885
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0049 Score=58.18 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||+|||+|..|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 79999876
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0066 Score=46.66 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=46.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-ADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
..+|.|||.|.+|..=++.|.+.|.+|++++.+. ...+..+.. ....++.++.+++||.|+ ....+.+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~----~~~~~~i~~~~~~~~~~l~~~~lV~~at-~d~~~n~~i 77 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI----EFSEGLIQLIRREFEEDLDGADLVFAAT-DDPELNEAI 77 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE----HHHHTSCEEEESS-GGGCTTESEEEE-S-S-HHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch----hhhhhHHHHHhhhHHHHHhhheEEEecC-CCHHHHHHH
Confidence 3689999999999999999999999999999874 111121211 122345577889999999 444444333
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0071 Score=57.82 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCC---
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGY--- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~--- 115 (351)
.||.|+|+|.+|+.++..|+..|. +++++|++.-....+..+ |........+.+. +.++-+.+.+.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~ 215 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT 215 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 689999999999999999999998 799999874222222211 1111111111111 23443333311
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
...+.+.+ .+-++||+++-. +..-..+.+.....++.++.+.+.+
T Consensus 216 ~~~~~~~~-----------~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 216 SDNVEALL-----------QDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred hHHHHHHH-----------hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11122222 244578877654 3333345666666788888775543
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=51.57 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=67.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccC---C--HHHh----h--cCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLAD---S--PHSL----A--SQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~---~--~~~~----~--~~~DiIi~~vp~~~ 117 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+-+.... . -.++ + -++|+.+.+.+...
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~ 107 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL 107 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 579999999999999999999998 699998775433333322110000 0 1111 1 15677777653221
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
.++-+. + .+.+-++|+++.-. +.+-..+.+.....++.++.+.+.+.
T Consensus 108 -~~~~~~----~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 108 -SEENID----E---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred -CHHHHH----H---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 111111 1 22355688887655 44444555566667888887755543
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.034 Score=50.51 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEE-EeCCccc--ch-hHHhcCCccc--CCHHHhhc-----CCC-EEEEecC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTV-FNRTLSK--AQ-PLLDIGAHLA--DSPHSLAS-----QSD-VVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~-~dr~~~~--~~-~~~~~g~~~~--~~~~~~~~-----~~D-iIi~~vp 114 (351)
+.+||.|.|+ |.||...++.+.+.+++++. .++.++- .. .+...++.+. +++++.+. .+| ++|=.+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT- 88 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYT- 88 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECC-
Confidence 3479999998 99999999999888888664 4554322 11 2222245555 77887772 478 677777
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.|..+.+.+. .. +..+..+|.-+|+.... ++.+....+++.++-+|++.
T Consensus 89 ~P~a~~~~~~----~~---~~~g~~~VvGTTG~~~e--~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 89 LPDAVNDNAE----LY---CKNGLPFVMGTTGGDRD--RLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred ChHHHHHHHH----HH---HHCCCCEEEECCCCCHH--HHHHHHhcCCccEEEECccc
Confidence 7777776665 22 23455566666664432 44444444567777777774
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0086 Score=55.50 Aligned_cols=119 Identities=21% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC--------CCeEE---EEeCCcccchhHHhcC-CcccCCH-----HHhh--cCCCE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA--------GYTVT---VFNRTLSKAQPLLDIG-AHLADSP-----HSLA--SQSDV 108 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~--------g~~V~---~~dr~~~~~~~~~~~g-~~~~~~~-----~~~~--~~~Di 108 (351)
+++||+|+|.|.+|+.+++.|.++ |.++. +.+|+....+.+.-.+ ....++. .+++ .+.|+
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 81 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDV 81 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCE
Confidence 357999999999999999999875 33433 3355544433111111 1222333 3433 35679
Q ss_pred EEEecCC-hhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEE-eccCC
Q 018694 109 VFSIVGY-PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAI-DAPVS 171 (351)
Q Consensus 109 Ii~~vp~-~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v-~~pv~ 171 (351)
|+.+++. ....+. .. .+..++..++.||...+... ..-.++.+...+.++.+. .+.+.
T Consensus 82 vve~~~~d~~~~~~-~~----~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~ 142 (333)
T COG0460 82 VVELVGGDVEPAEP-AD----LYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVG 142 (333)
T ss_pred EEecCcccCCchhh-HH----HHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeec
Confidence 9998865 333342 33 44556678888886665421 122356666555565443 44344
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.038 Score=50.71 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=72.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~~~ 125 (351)
.||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+. -.|+..+.+.+|+... .|+.++++ +...+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~v-p~~~v~~~l~- 83 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYV-PPPFAADAIL- 83 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEc-CHHHHHHHHH-
Confidence 68999998 88999999999998887 555555541 111 1378889999998886 89999999 6666666776
Q ss_pred CCCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v 166 (351)
+....- -+..+| .+.+.+.. .+++.+..++.+++++
T Consensus 84 ---e~~~~g-vk~avI-~s~Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 84 ---EAIDAG-IDLIVC-ITEGIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred ---HHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 554421 122233 44443322 2366677766677665
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0084 Score=54.37 Aligned_cols=73 Identities=27% Similarity=0.412 Sum_probs=58.4
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-+ ..|..++..|...|..|+++.+.. .++.+.++++|+||.+++++.-+..
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~------- 211 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITP------- 211 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCH-------
Confidence 689999999 999999999999999999998642 3577788999999999976633221
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..+++|++|||++..
T Consensus 212 ---~~vk~GavVIDVgi~ 226 (279)
T PRK14178 212 ---DMVKPGATVIDVGIN 226 (279)
T ss_pred ---HHcCCCcEEEEeecc
Confidence 224799999998843
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0083 Score=56.19 Aligned_cols=88 Identities=13% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC---eEEEEeCC--cccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY---TVTVFNRT--LSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~---~V~~~dr~--~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~ 121 (351)
.+||+|||+ |..|..+.+.|.+..| ++..+... ..+.-.+....+.+. +.++.. .++|++|+|+ +.....+
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~-p~~~s~~ 81 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVA-GREASAA 81 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECC-CHHHHHH
Confidence 479999988 9999999999998655 55555332 222111221123333 334332 6799999999 4445555
Q ss_pred HhhCCCCCcccCCCCCcEEEecCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
... .+. ..|..|||++.
T Consensus 82 ~~~----~~~---~~g~~VIDlS~ 98 (336)
T PRK08040 82 YAE----EAT---NAGCLVIDSSG 98 (336)
T ss_pred HHH----HHH---HCCCEEEECCh
Confidence 555 332 36889999984
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=56.12 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=47.9
Q ss_pred CeEEEEccChh-hHHHHHHHHHC-----CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNA-----GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~-----g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|+. +..+...|... +.+|+++|+++++.+.... .| +..++|.++++.++|+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 69999999985 22355566543 3489999999987654322 13 4568899999999999999
Q ss_pred ec
Q 018694 112 IV 113 (351)
Q Consensus 112 ~v 113 (351)
..
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 88
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0069 Score=56.49 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred EEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCCEEE
Q 018694 52 IGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~DiIi 110 (351)
|||+|+|.+|..+++.+.+. +.+|+ +.|.+++....+.. .++.+..+++++..++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998753 45655 45666654333322 13445667889989999999
Q ss_pred EecCChhHH
Q 018694 111 SIVGYPSDV 119 (351)
Q Consensus 111 ~~vp~~~~~ 119 (351)
.|+|...+.
T Consensus 81 e~Tp~~~~~ 89 (333)
T TIGR01546 81 DATPGGIGA 89 (333)
T ss_pred ECCCCCCCh
Confidence 999766544
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0083 Score=56.69 Aligned_cols=88 Identities=15% Similarity=0.258 Sum_probs=55.1
Q ss_pred CCeEEEEcc-ChhhHHHHH-HHHHCCCe---EEEEeCCc--ccchhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCA-HLLNAGYT---VTVFNRTL--SKAQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~-~L~~~g~~---V~~~dr~~--~~~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
|+||+|||+ |.+|..+.+ .|....++ +..+.... .+...+..+...+.. +.+ ...++|++|+|+ +....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~-~~~~s 78 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQ-GGDYT 78 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECC-CHHHH
Confidence 589999988 999999998 66666666 66654431 122222222222222 233 347899999999 55566
Q ss_pred HHHhhCCCCCcccCCCCC--cEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPG--GIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~--~~ii~~s~ 145 (351)
+++.. .+. ..| .+|||.++
T Consensus 79 ~~~~~----~~~---~aG~~~~VID~Ss 99 (369)
T PRK06598 79 NEVYP----KLR---AAGWQGYWIDAAS 99 (369)
T ss_pred HHHHH----HHH---hCCCCeEEEECCh
Confidence 66665 432 356 56999884
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.024 Score=50.29 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=30.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|+|+|.+|+.+++.|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 799998764
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0064 Score=57.21 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCCeE---EEEeCCcccchhHHhcC--CcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGYTV---TVFNRTLSKAQPLLDIG--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~~V---~~~dr~~~~~~~~~~~g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||+||| .|..|..+.+.|.+.+|++ .++.+....-+.+...| +...+...+.+.++|++|+|+ +.....+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~-g~~~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSA-GGSVSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECC-CHHHHHHHHH
Confidence 699998 6999999999999988863 34444433322222222 222211123347899999999 4445555554
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+ +..|..|||++.
T Consensus 80 ----~~---~~~G~~VID~ss 93 (339)
T TIGR01296 80 ----KA---AKCGAIVIDNTS 93 (339)
T ss_pred ----HH---HHCCCEEEECCH
Confidence 33 235778999884
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0094 Score=54.50 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=28.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
||.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 69999999999999999999998 68888865
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.047 Score=49.98 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=74.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.||.|.|. |.+|..+-..+...|++ .++..++.+-.. .-.|+..+.+.+|+... .|+.++++ +...+.++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~-~v~G~~~y~sv~dlp~~~~~Dlavi~v-pa~~v~~~l~-- 81 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGT-TVLGLPVFDSVKEAVEETGANASVIFV-PAPFAADAIF-- 81 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcc-eecCeeccCCHHHHhhccCCCEEEEec-CHHHHHHHHH--
Confidence 57999997 99999999999999998 667777652111 11378889999998876 79999999 6666776776
Q ss_pred CCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEE
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAI 166 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v 166 (351)
+.... .-+..+| ++.+.+.. .+++.+..++.+++++
T Consensus 82 --e~~~~-Gvk~avI-is~Gf~e~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 82 --EAIDA-GIELIVC-ITEGIPVHDMLKVKRYMEESGTRLI 118 (286)
T ss_pred --HHHHC-CCCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 54432 1222333 45554433 3466666666676665
|
ATP citrate lyases appear to form an outgroup. |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.018 Score=56.05 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=47.4
Q ss_pred CeEEEEccChhhH-HHHHHHHHC-----CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGR-SMCAHLLNA-----GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~-~ia~~L~~~-----g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|+.=+ .+...|... +-+|+++|.++++++.... .| +..++|..+++..+|+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 7999999998622 355555543 3489999999987655322 12 4567899999999999999
Q ss_pred ec
Q 018694 112 IV 113 (351)
Q Consensus 112 ~v 113 (351)
..
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 88
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.048 Score=47.19 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=63.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhh--cCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLA--SQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~--~~~DiIi~~vp~~~~ 118 (351)
.||.|+|+|.+|+.+++.|+..|. .++++|.+.=....+..+ |-.......+.+ -++++-+.+......
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~ 101 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS 101 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 579999999999999999999999 599998763221111111 111111111111 145665555422111
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
+... + .+..-++||++.. .......+.+.....++.++.+...|
T Consensus 102 --~~~~----~---~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 102 --EKPE----E---FFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccHH----H---HHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1111 1 1123357776543 35555567777777788887665543
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.023 Score=50.89 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=61.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |-..+....+.+. ++++-+.+.+....
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~ 112 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD 112 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 689999999999999999999998 799998874333233222 2111111111111 34444444422111
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv 170 (351)
.+-.. ..+..-++||+++-. +..-..+.+.....++.++.+.+
T Consensus 113 -~~~~~-------~~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 113 -DDELA-------ALIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred -HHHHH-------HHHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeee
Confidence 11111 112244577776643 44444466666566777776533
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.013 Score=54.18 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=55.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCe---EEEE--eCCcccc-hhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYT---VTVF--NRTLSKA-QPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~---V~~~--dr~~~~~-~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
++||+|+|+ |.+|..|.+.|.+..++ +.++ .|+..+- ..+....+.+-. .......++|++|.|. .....
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~a-g~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAA-GGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeC-chHHH
Confidence 479999976 99999999999987553 3333 4444332 334333223222 1122345899999999 44444
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+++.. .+. ..|.++||.++
T Consensus 80 ~~~~p----~~~---~~G~~VIdnsS 98 (334)
T COG0136 80 KEVEP----KAA---EAGCVVIDNSS 98 (334)
T ss_pred HHHHH----HHH---HcCCEEEeCCc
Confidence 65665 333 46788998774
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=54.74 Aligned_cols=87 Identities=29% Similarity=0.413 Sum_probs=60.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh-cCCcccCCHH---------Hhh--cCCCEEEEecCChh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD-IGAHLADSPH---------SLA--SQSDVVFSIVGYPS 117 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~-~g~~~~~~~~---------~~~--~~~DiIi~~vp~~~ 117 (351)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .|.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 79999999999999888887886 68888999999888877 3443322221 111 24899999997665
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.+.+. .+.++..++.++.
T Consensus 251 ~~~~ai~--------~~r~gG~v~~vGv 270 (350)
T COG1063 251 ALDQALE--------ALRPGGTVVVVGV 270 (350)
T ss_pred HHHHHHH--------HhcCCCEEEEEec
Confidence 5665554 3445555555554
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.057 Score=52.92 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=70.3
Q ss_pred eEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccC-CHHHhhcCCCEEEEec--CC-hhHHHHHhh
Q 018694 51 RIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLAD-SPHSLASQSDVVFSIV--GY-PSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~v--p~-~~~~~~v~~ 124 (351)
+|.|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.+.++|+||..- |+ ...+....+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4889999999998 99999999999999997643 23445555766542 2234456789887753 21 223333322
Q ss_pred CCC-----CCcc-cCC-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 125 HPS-----SGAL-SGL-RPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 125 ~~~-----~~i~-~~l-~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
... .++. ..+ ....+-|.-|+|...++.-+...+...|.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 100 0111 111 23457777788877777777777765553
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=54.98 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=53.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCC-CeEEEE-eCCcccchhHHhc-------C-------CcccCCHHHhhcCCCEEEEe
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAG-YTVTVF-NRTLSKAQPLLDI-------G-------AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g-~~V~~~-dr~~~~~~~~~~~-------g-------~~~~~~~~~~~~~~DiIi~~ 112 (351)
|||+|+|+ |.||..+++.|.+.. +++..+ +..+..-+.+.+. + +.+.+..++...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 58999996 999999999998866 577655 5443322222110 0 11111122344789999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+|... ..++.. .+. ..|..+||++..
T Consensus 81 ~p~~~-s~~~~~----~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEV-AEEVEP----KLA---EAGKPVFSNASN 106 (341)
T ss_pred CCHHH-HHHHHH----HHH---HCCCEEEECChh
Confidence 95543 333444 332 357778888743
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0065 Score=46.99 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred hHHHHHHHHHCCCeEEEEeCCcccchhHH---hcCCcccCCHHHhhcCCCEEEEecCChhHHHHH-hhCCCCCcccCCCC
Q 018694 61 GRSMCAHLLNAGYTVTVFNRTLSKAQPLL---DIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV-LLHPSSGALSGLRP 136 (351)
Q Consensus 61 G~~ia~~L~~~g~~V~~~dr~~~~~~~~~---~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v-~~~~~~~i~~~l~~ 136 (351)
+..+++.|.+.|.+|.+||..-....... ..++...+++++.++.+|.||+++ +......+ .. .+...+.+
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t-~h~~f~~l~~~----~~~~~~~~ 93 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLAT-DHDEFRELDWE----EIAKLMRK 93 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHH----HHHHHSCS
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEe-cCHHHhccCHH----HHHHhcCC
Confidence 57789999999999999998755433333 246888889999999999999999 55544432 22 33344557
Q ss_pred CcEEEecCCC
Q 018694 137 GGIIVDMTTS 146 (351)
Q Consensus 137 ~~~ii~~s~~ 146 (351)
+.+|+|+-+.
T Consensus 94 ~~~iiD~~~~ 103 (106)
T PF03720_consen 94 PPVIIDGRNI 103 (106)
T ss_dssp SEEEEESSST
T ss_pred CCEEEECccc
Confidence 8899998654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=51.65 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=76.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCC---CeEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG---YTVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g---~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.-..++|.|..+-.+.....+.- .+|.+|+|+.+..+.+.+. .+..+.+.++++..+|+|+.|++.
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls- 217 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS- 217 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc-
Confidence 45788999999998877766542 3899999999888777662 245677889999999999999943
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+..+. ..++.+++. ||+-.+......+....+-+.++.|+|.
T Consensus 218 --tePilf------gewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 218 --TEPILF------GEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDS 260 (333)
T ss_pred --CCceee------eeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEec
Confidence 233333 345667754 4444444444556666665667888876
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.021 Score=58.74 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=32.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
..+||+|||+|..|.+.|..|.+.|++|+++++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 347999999999999999999999999999998643
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=51.61 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-----------CeEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-----------YTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-----------~~V~~~dr~ 81 (351)
.||.|||+|.+|+.+++.|++.| .+++++|.+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 68999999999999999999863 288999876
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.032 Score=54.42 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=70.8
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-ch----hHH-hcCCcccC-CHHHhhcCCCEEEEecCCh---hHHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQ----PLL-DIGAHLAD-SPHSLASQSDVVFSIVGYP---SDVR 120 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~----~~~-~~g~~~~~-~~~~~~~~~DiIi~~vp~~---~~~~ 120 (351)
||.|||.|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+.... ...+.+.++|+||..-.-+ ..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999976442 21 122 23665432 1244457789877654211 2232
Q ss_pred HHhhCCC-----CCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 121 HVLLHPS-----SGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 121 ~v~~~~~-----~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+..... .++. ..+....+-|.-++|...++.-+...+...+..+.-+
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~ 134 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLG 134 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 2221100 0111 1123345777777787777777777776656554433
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=52.34 Aligned_cols=73 Identities=25% Similarity=0.458 Sum_probs=57.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||- ..+|..++..|.+.|..|+++... +.++.+...++|+||++++++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------- 214 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLITP------- 214 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 68999987 567999999999999999988743 23577788899999999987764432
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 215 ---~~vk~GavVIDVGin 229 (287)
T PRK14173 215 ---EMVRPGAVVVDVGIN 229 (287)
T ss_pred ---HHcCCCCEEEEccCc
Confidence 235689999998743
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.023 Score=51.84 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=62.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCC---
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGY--- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~--- 115 (351)
.||.|||+|.+|+.++..|+.+|. +++++|.+.=....+..+ |-..+....+.+. ++++=|.+.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~ 107 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG 107 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 579999999999999999999998 799998764322222222 2111111122121 23333444421
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
...+.+++ ..-++|||++... ..+-..+.+.....++.++.+.+.+
T Consensus 108 ~~n~~~ll-----------~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 108 KENADAFL-----------DGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ccCHHHHH-----------hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11222222 2445788776432 1333455556666778887765444
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.019 Score=58.87 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=48.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc---------------------cchhHHhcCCccc--------CC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS---------------------KAQPLLDIGAHLA--------DS 98 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~---------------------~~~~~~~~g~~~~--------~~ 98 (351)
...||+|||.|..|...|..|.+.|++|++|++.+. ..+.+.+.|+.+. .+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 357999999999999999999999999999998763 1222333354321 13
Q ss_pred HHHhhcCCCEEEEecC
Q 018694 99 PHSLASQSDVVFSIVG 114 (351)
Q Consensus 99 ~~~~~~~~DiIi~~vp 114 (351)
.++.....|.||+++.
T Consensus 389 ~~~l~~~~DaV~latG 404 (639)
T PRK12809 389 FSDLTSEYDAVFIGVG 404 (639)
T ss_pred HHHHHhcCCEEEEeCC
Confidence 4455567899999884
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.041 Score=54.41 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=68.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-c----chhHHhcCCcccCC-HHHhhcCCCEEEEecCC---hhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-K----AQPLLDIGAHLADS-PHSLASQSDVVFSIVGY---PSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~----~~~~~~~g~~~~~~-~~~~~~~~DiIi~~vp~---~~~~~ 120 (351)
++|.|||.|..|..+|..|.+.|++|+++|+++. . .+.+.+.|+.+... ..+....+|+||++..- ...+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHH
Confidence 5899999999999999999999999999996642 1 23355557655321 11133568999988732 22222
Q ss_pred HHhhCCC-----CCcc-cCCCC----CcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 121 HVLLHPS-----SGAL-SGLRP----GGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 121 ~v~~~~~-----~~i~-~~l~~----~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.+-.... .++. ....+ ..+-|.-|+|...++.-+...+...+.
T Consensus 97 ~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~ 149 (480)
T PRK01438 97 AAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGL 149 (480)
T ss_pred HHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCC
Confidence 1111000 0111 11211 246777777877777767777765443
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.023 Score=52.34 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=51.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.||+|+|+ |..|..+.+.|....+ ++....-+. . .. ..+.+++.+++|++|+|+|. ....+...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-~--------~~-~~~~~~~~~~~D~vFlalp~-~~s~~~~~--- 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-R--------KD-AAERAKLLNAADVAILCLPD-DAAREAVS--- 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-c--------cC-cCCHhHhhcCCCEEEECCCH-HHHHHHHH---
Confidence 48999976 9999999999987543 333332111 1 11 12455666789999999954 44555554
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
.+. ..+..|||+|.
T Consensus 68 -~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 68 -LVD---NPNTCIIDAST 81 (310)
T ss_pred -HHH---hCCCEEEECCh
Confidence 332 36788999984
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.019 Score=52.52 Aligned_cols=73 Identities=22% Similarity=0.417 Sum_probs=57.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||- .-+|..++..|.+.|..|+++... +.++.+.++++|+||+|++++..+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------- 217 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIGA------- 217 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 68999987 457999999999999999998642 23677788999999999987764432
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 218 ---~~ik~gavVIDvGin 232 (297)
T PRK14186 218 ---EMVKPGAVVVDVGIH 232 (297)
T ss_pred ---HHcCCCCEEEEeccc
Confidence 245689999998743
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.042 Score=50.80 Aligned_cols=40 Identities=30% Similarity=0.588 Sum_probs=31.7
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~ 89 (351)
-|||+||+|.||+.+...... .|++|+ +.||+.+..++..
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~ 59 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY 59 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH
Confidence 589999999999999998875 688866 5588877655443
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.021 Score=51.93 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=58.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||- .-+|..++..|.+.|..|++++.. +.++.+..+++|+||.+++++..+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~~------- 218 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIKA------- 218 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccCH-------
Confidence 68999987 567999999999999999999743 23567778999999999987765443
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 219 ---~~ik~gavVIDvGin 233 (284)
T PRK14177 219 ---DWISEGAVLLDAGYN 233 (284)
T ss_pred ---HHcCCCCEEEEecCc
Confidence 234699999998853
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.049 Score=49.26 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=70.1
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCCeEEEE--eCCcc--cchhHHhcCCcc------cCCHHHhhcC-CC-EEEEecCChh
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGYTVTVF--NRTLS--KAQPLLDIGAHL------ADSPHSLASQ-SD-VVFSIVGYPS 117 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~~V~~~--dr~~~--~~~~~~~~g~~~------~~~~~~~~~~-~D-iIi~~vp~~~ 117 (351)
||.|.|+ |.||...++...+.+++++.. ++... ....+...++.+ ..+++++... +| ++|=.+ .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 6899988 999999999988888887764 33211 122222224555 6778887766 89 777777 777
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.+.+.+. .. +..+..+|..+++.... ++.+.....++.++-+|++.
T Consensus 81 ~~~~n~~----~~---~~~gv~~ViGTTG~~~~--~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 81 AVNDNAA----FY---GKHGIPFVMGTTGGDRE--ALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred HHHHHHH----HH---HHCCCCEEEcCCCCCHH--HHHHHHHhcCCCEEEECccc
Confidence 7666665 22 33555666666664322 33333333356667677763
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=55.43 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 689999999999999999999997 899999873
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.013 Score=52.60 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=35.6
Q ss_pred CCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 46 CPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 46 ~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
+..+|||.|+|+ |.+|..+++.|.+.|++|++..|++++...
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 56 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT 56 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 344689999995 999999999999999999999998766443
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.064 Score=52.49 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHh--cCCcccC--CHHHhhcCCCEEEEecCCh---hHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLD--IGAHLAD--SPHSLASQSDVVFSIVGYP---SDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~--~g~~~~~--~~~~~~~~~DiIi~~vp~~---~~~ 119 (351)
.++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. .+.+.+ .|+.... ..++...++|+||....-+ ..+
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~ 84 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDI 84 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHH
Confidence 368999999999999999999999999999976542 233433 2554321 1233446789988865222 233
Q ss_pred HHHhhCCCCCcc-------cCC---CCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 120 RHVLLHPSSGAL-------SGL---RPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 120 ~~v~~~~~~~i~-------~~l---~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
..+.+... .+. ..+ ....+-|.-|+|...++.-+...+...+..
T Consensus 85 ~~a~~~~i-~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 85 EAFKQNGG-RVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHHcCC-cEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 33222100 111 111 124577777778777777777777655544
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.051 Score=47.42 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=49.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc-ccchhHHhcC-Ccc---cCCHHHhhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL-SKAQPLLDIG-AHL---ADSPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~~~~~~~g-~~~---~~~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
++|.|||.|..|..=++.|.+.|.+|+++.... +.+..+.+.+ +.. .-+.++ ...+++||.|+ ++..+.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt-~d~~ln 86 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAAT-DDEELN 86 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeC-CCHHHH
Confidence 689999999999999999999999999998765 4444444443 211 112333 34599999999 544433
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.022 Score=51.78 Aligned_cols=73 Identities=25% Similarity=0.448 Sum_probs=57.8
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+++.|||-+ -+|..++..|.+.|..|+++... +.++.+.++++|+||.+++++.-+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~~------- 216 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVKK------- 216 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 689999875 56999999999999999998642 23577788999999999987764442
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 217 ---~~vk~GavVIDvGin 231 (284)
T PRK14170 217 ---DYIKPGAIVIDVGMD 231 (284)
T ss_pred ---HHcCCCCEEEEccCc
Confidence 234689999998744
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=51.94 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=57.7
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-+ .+|..++..|.+.|..|+++... +.++.+...++|+||.+++++..+..-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~~~------ 217 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNLLRSD------ 217 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCHH------
Confidence 689999875 57999999999999999988753 235777889999999999887654432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++++|.++||++.
T Consensus 218 ----~vk~GavVIDvGi 230 (282)
T PRK14166 218 ----MVKEGVIVVDVGI 230 (282)
T ss_pred ----HcCCCCEEEEecc
Confidence 3468999999874
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.049 Score=52.27 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=63.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC--CHHHh-----hcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD--SPHSL-----ASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~--~~~~~-----~~~~DiIi~~vp~~~~~~~ 121 (351)
..|-|+|.|.+|..+++.|.+.|.+|++++.+. .+...++|... .. +.++. +++++.++++++++.....
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF 318 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence 469999999999999999999999999998652 23333333221 11 12222 3578999998865554444
Q ss_pred HhhCCCCCcccCCCCC-cEEEecCCCChhHHHHHHHHHhcCCCcEEecc
Q 018694 122 VLLHPSSGALSGLRPG-GIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~-~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~p 169 (351)
++. .... +.++ ++++-..+ +.. .+.+.+.|...+-.|
T Consensus 319 ivL----~ar~-l~p~~kIIa~v~~--~~~----~~~L~~~GaD~VIsp 356 (393)
T PRK10537 319 VVL----AAKE-MSSDVKTVAAVND--SKN----LEKIKRVHPDMIFSP 356 (393)
T ss_pred HHH----HHHH-hCCCCcEEEEECC--HHH----HHHHHhcCCCEEECH
Confidence 443 3332 3343 45554332 322 333444566665443
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.091 Score=45.48 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=63.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc----------CCcccCCHHHhh--cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLA--SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~--~~~DiIi~~vp~~ 116 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+ |...+....+.+ -++++-+.+....
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 689999999999999999999998 599998763221121111 111111111111 1355555555221
Q ss_pred hH-HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 117 SD-VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 117 ~~-~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
.. ..+-.. ..+.+-.+||++.. .......+.+...+.++.++.+-..
T Consensus 100 ~~~~~~~~~-------~~~~~~dvVi~~~d-~~~~~~~ln~~c~~~~ip~i~~~~~ 147 (198)
T cd01485 100 SLSNDSNIE-------EYLQKFTLVIATEE-NYERTAKVNDVCRKHHIPFISCATY 147 (198)
T ss_pred cccchhhHH-------HHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEee
Confidence 10 011111 11224457776643 3555566777777778888776443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.021 Score=51.75 Aligned_cols=73 Identities=22% Similarity=0.449 Sum_probs=57.9
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+++.|||- ..+|..++..|.++|..|++++.. +.++.+...++|+||.+++++..+..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------ 217 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDE------ 217 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH------
Confidence 368999987 567999999999999999999743 23677778899999999987765442
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||+..
T Consensus 218 ----~~ik~gavVIDvGi 231 (278)
T PRK14172 218 ----EYVKEGAIVIDVGT 231 (278)
T ss_pred ----HHcCCCcEEEEeec
Confidence 23468999999864
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=51.71 Aligned_cols=72 Identities=22% Similarity=0.506 Sum_probs=57.1
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-+ .+|..++..|.+.|..|+++... +.++.+..+++|+||++++++..+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~~------- 215 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIGA------- 215 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 689999875 57999999999999999988642 13577778899999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 216 ---~~vk~GavVIDvGi 229 (282)
T PRK14169 216 ---DAVKPGAVVIDVGI 229 (282)
T ss_pred ---HHcCCCcEEEEeec
Confidence 23468999999874
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.063 Score=53.37 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=68.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhc--CCcccC--CHHHhhcCCCEEEEe--cCCh-----
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDI--GAHLAD--SPHSLASQSDVVFSI--VGYP----- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~--g~~~~~--~~~~~~~~~DiIi~~--vp~~----- 116 (351)
.||.|+|.|..|.++|+.|.+.|++|+++|..... .+.+... |+.... ..++.+.++|+||.. +|+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~ 87 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALA 87 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccC
Confidence 58999999999999999999999999999975432 2334444 333321 234455689988886 3221
Q ss_pred hHHHHHhhCCC-----C----CcccC-----CCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 117 SDVRHVLLHPS-----S----GALSG-----LRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 117 ~~~~~v~~~~~-----~----~i~~~-----l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
..+...-.... . .+... ..+..+-|.-++|...++.-+...+...+..
T Consensus 88 ~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 88 PLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred HHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 22221111000 0 11110 1124567777788777777777777655543
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=51.73 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=58.7
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-.++.|||-++ +|..|+..|...+..|+++... +.++.+..+++|+++.++.++..+..
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~~------ 215 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIKA------ 215 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCcccccc------
Confidence 36899999876 5999999999999999999764 23667778899999999977654441
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
+++.++.++||....
T Consensus 216 ----d~vk~gavVIDVGin 230 (283)
T COG0190 216 ----DMVKPGAVVIDVGIN 230 (283)
T ss_pred ----ccccCCCEEEecCCc
Confidence 345689999997743
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.03 Score=53.08 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=69.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc------------------cchhHHhc-CCcccCCHHHhhcCCCEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS------------------KAQPLLDI-GAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~------------------~~~~~~~~-g~~~~~~~~~~~~~~DiIi 110 (351)
.||+|=|.|++|...++.|.+.|..|+.++-+.. +.+.+.+. |.+..++.+-...+||+.+
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~ 287 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI 287 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence 6899999999999999999999999998876655 22222222 4444444333345799888
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
-|.-...-..+-+. ++ +-++|+...|+ |.+.+ ..+.+.++|+.|+..
T Consensus 288 PcA~~n~I~~~na~----~l-----~ak~V~EgAN~-P~t~e-A~~i~~erGIl~~PD 334 (411)
T COG0334 288 PCALENVITEDNAD----QL-----KAKIVVEGANG-PTTPE-ADEILLERGILVVPD 334 (411)
T ss_pred ccccccccchhhHH----Hh-----hhcEEEeccCC-CCCHH-HHHHHHHCCCEEcCh
Confidence 77733332233332 22 23388988887 55443 334444788888754
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.013 Score=42.60 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=32.0
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA 85 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~ 85 (351)
||.|||.|..|.-+|..|.+.|.+|+++.+++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999986543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.014 Score=57.51 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=71.5
Q ss_pred CCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc-cchhHHhcCCccc-CCHHHhhcCCCEEEEecC--C-hhHHHHH
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLA-DSPHSLASQSDVVFSIVG--Y-PSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~-~~~~~~~~~~DiIi~~vp--~-~~~~~~v 122 (351)
.+||.|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+... ....+.+.++|+||..-. + ...+..+
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 86 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAA 86 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHH
Confidence 468999999999999 89999999999999997643 2334555576553 223344567898877542 1 1223322
Q ss_pred hhCCC-----CCcccCC--CCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 123 LLHPS-----SGALSGL--RPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 123 ~~~~~-----~~i~~~l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
..... .++...+ ....+-|.-|+|...++.-+...+...|
T Consensus 87 ~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 87 RELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 22100 0111112 2245778888887777777777776555
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.025 Score=51.46 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=57.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||- ..+|..++..|.+.|..|+++... +.++.+..+++|+||++++++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------------T~dl~~~~k~ADIvIsAvGkp~~i~~------- 217 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFITA------- 217 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHhhhcCEEEEccCCcCcCCH-------
Confidence 68999987 557999999999999999999753 23566678899999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 218 ---~~vk~gavVIDvGi 231 (282)
T PRK14180 218 ---DMVKEGAVVIDVGI 231 (282)
T ss_pred ---HHcCCCcEEEEecc
Confidence 23468999999874
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0087 Score=54.69 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=44.8
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC----CcccCCHHHhh------cC-CCEEEEecCC
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG----AHLADSPHSLA------SQ-SDVVFSIVGY 115 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g----~~~~~~~~~~~------~~-~DiIi~~vp~ 115 (351)
||.|+|+ |.+|+.+++.|.+.|++|.+..|++++........ ..-.+++.+++ .. +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4889977 99999999999999999999999987543211011 11112233444 34 8999988854
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=51.42 Aligned_cols=72 Identities=24% Similarity=0.478 Sum_probs=57.1
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+++.|||-+ -+|..++..|.+.|..|+++... +.++.+...++|+||.+++++..+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~------- 218 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTA------- 218 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCH-------
Confidence 689999875 57999999999999999988742 23577788899999999987764443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 219 ---~~vk~GavVIDvGi 232 (288)
T PRK14171 219 ---EYFNPESIVIDVGI 232 (288)
T ss_pred ---HHcCCCCEEEEeec
Confidence 23468999999873
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.012 Score=55.38 Aligned_cols=65 Identities=15% Similarity=0.338 Sum_probs=44.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-CCcc-----c---CCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GAHL-----A---DSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~~~-----~---~~~~~~~~~~DiIi~~v 113 (351)
||||.|.|+ |.+|+.++..|.+. |++|++++|+.+....+... ++.. . ....++++++|+||-|.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 589999986 99999999999876 69999999876543333221 2211 1 11234556889988653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.04 Score=52.23 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999998 699999874
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.012 Score=50.09 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=43.6
Q ss_pred eEEEEccChhhHHH--HHHHHHC----CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEEEe
Q 018694 51 RIGWIGTGVMGRSM--CAHLLNA----GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 51 kI~iIG~G~mG~~i--a~~L~~~----g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi~~ 112 (351)
||+|||+|+.-... ...+... +.+|.++|+++++++.... .| +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 79999999987662 2223321 2389999999988754322 12 44588999999999999999
Q ss_pred cCC
Q 018694 113 VGY 115 (351)
Q Consensus 113 vp~ 115 (351)
+..
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 843
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.058 Score=47.83 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=65.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCCh--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYP-- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~-- 116 (351)
.||.|+|+|.+|+.+++.|++.|. +++++|.+.=....+..+ |-....-..+.+. ++++-+.+....
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~ 91 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLT 91 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecC
Confidence 579999999999999999999998 799998764322222211 1111111111111 345555554221
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
......+. .+-.+||++.-. ......+.+.+...++.++.+.-.|+
T Consensus 92 ~~~~~~l~~----------~~~D~VvdaiD~-~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 92 PDNSEDLLG----------GDPDFVVDAIDS-IRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred HhHHHHHhc----------CCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 12222221 134578877554 44445677777777888887744444
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.033 Score=52.63 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=51.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeC---CcccchhHHhcCCcccCCHHH------hhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR---TLSKAQPLLDIGAHLADSPHS------LASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr---~~~~~~~~~~~g~~~~~~~~~------~~~~~DiIi~~vp~~~~~~ 120 (351)
.+|.|+|+|.+|...++.+...|.+|+++++ ++++.+.+.+.|.......++ .....|+||-|+..+..+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 253 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAF 253 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHH
Confidence 5799999999999999988889999999988 566766666656543221111 1134688888885444444
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
..+.
T Consensus 254 ~~~~ 257 (355)
T cd08230 254 EALP 257 (355)
T ss_pred HHHH
Confidence 4443
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.042 Score=54.15 Aligned_cols=35 Identities=37% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
...||.|||.|..|...|..|++.|++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34789999999999999999999999999998875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.028 Score=49.72 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=57.4
Q ss_pred EEEEeCCcccchhHHhc-CCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC---Chh
Q 018694 75 VTVFNRTLSKAQPLLDI-GAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS---EPS 149 (351)
Q Consensus 75 V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~---~~~ 149 (351)
+.+||+++++.+.+.++ |...+++.++++ .+.|+|++|+|...+.+.... . +..|+-++-.+.+ ...
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~-----a---L~aGkhVl~~s~gAlad~e 76 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEK-----I---LKNGKDLLIMSVGALADRE 76 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHH-----H---HHCCCCEEEECCcccCCHH
Confidence 55889999988887765 677889999986 579999999966655554443 2 2345444444443 345
Q ss_pred HHHHHHHHHhcCCCcEE
Q 018694 150 LASELSAAASSKNCSAI 166 (351)
Q Consensus 150 ~~~~l~~~~~~~~~~~v 166 (351)
..+++.+...+.|..+.
T Consensus 77 ~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 77 LRERLREVARSSGRKVY 93 (229)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 66777777776666554
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.03 Score=51.31 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=57.7
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-+ .+|..++..|.+.|..|+++... +.++++.++++|+||.|++++.-+..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~~------- 226 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIKG------- 226 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-------
Confidence 689999875 56999999999999999999642 23677888999999999977643332
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 227 ---~~vk~gavVIDvGin 241 (299)
T PLN02516 227 ---DWIKPGAAVIDVGTN 241 (299)
T ss_pred ---HHcCCCCEEEEeecc
Confidence 345799999998743
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.016 Score=54.10 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch-hHHhcCCcc-cC---CHHHhhcCCCEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-PLLDIGAHL-AD---SPHSLASQSDVV 109 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-~~~~~g~~~-~~---~~~~~~~~~DiI 109 (351)
|++|||||.|.+|..|+..-..-|+.|.+.|.+++.-. ++.+.-+.. ++ .+.++++.||+|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE
Confidence 47899999999999999999999999999998866432 222222222 22 345667788877
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.03 Score=51.22 Aligned_cols=72 Identities=25% Similarity=0.436 Sum_probs=57.4
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||-+ -+|..++..|.+.|..|++++.. +.++.+.++++|+||.+++++..+..-
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~~------ 220 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVKYS------ 220 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCHH------
Confidence 689999874 57999999999999999998753 235677789999999999877654432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++.+|.++||+..
T Consensus 221 ----~ik~gaiVIDVGi 233 (294)
T PRK14187 221 ----WIKKGAIVIDVGI 233 (294)
T ss_pred ----HcCCCCEEEEecc
Confidence 3468999999774
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.044 Score=51.57 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=38.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAH 94 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~ 94 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 579999999999999998888898 588899999888877776653
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.033 Score=49.53 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=29.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
||.|||+|.+|+.+++.|+..|+ +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999998 688998874
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.011 Score=57.21 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=31.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|.+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4689999999999999999999999999999975
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.031 Score=50.92 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=57.2
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-.+|.|||- ..+|..++..|.+.|..|++++.. +.++.+.++++|+||.+++++.-+..
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~~------ 217 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLITA------ 217 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCCH------
Confidence 368999987 567999999999999999998642 23677788999999999977663322
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|+++||++.
T Consensus 218 ----~~ik~gavVIDvGi 231 (284)
T PRK14190 218 ----DMVKEGAVVIDVGV 231 (284)
T ss_pred ----HHcCCCCEEEEeec
Confidence 23568999999874
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.033 Score=50.73 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=57.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH--CCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++.|||- ..+|..++..|.+ .+..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~----- 219 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTA----- 219 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCH-----
Confidence 68999987 5679999999988 68899988653 24677888999999999987764332
Q ss_pred CCCcccCCCCCcEEEecCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 220 -----~~ik~GavVIDvGin 234 (284)
T PRK14193 220 -----DMVKPGAAVLDVGVS 234 (284)
T ss_pred -----HHcCCCCEEEEcccc
Confidence 245689999998743
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.19 Score=49.48 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CC-----CCccc
Q 018694 215 GQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DF-----EPGFF 281 (351)
Q Consensus 215 a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~~ 281 (351)
...+|.+.|.+....+.+++|.+.+.++ .++++.++.++.+.+. ..++.++...+.+.+. +. .+.|.
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 7889999999999999999999997666 6899999999998886 5677776655544332 11 11121
Q ss_pred --hhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 282 --VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 282 --~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+......++.++..+-+.|+|+|.+.+....+.+.+.. .-...+++..|...|
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~----~~~~nliqaqRd~FG 446 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA----RLPANLLQAQRDYFG 446 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----cccHHHHHHHHHHhc
Confidence 22333445788999999999999999988888887752 233457777776654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.029 Score=51.38 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=28.1
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
||.|||+|.+|..+++.|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 68888765
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.066 Score=52.47 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHh--cCCcccC--CHHHhhcCCCEEEEecC--C-hhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLD--IGAHLAD--SPHSLASQSDVVFSIVG--Y-PSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~--~g~~~~~--~~~~~~~~~DiIi~~vp--~-~~~~~ 120 (351)
-.|.|||.|..|.++|+.|.+.|++|+++|..+.. .+.+.+ .|+.... ...+.+.++|+||..-. + ...+.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALR 86 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHH
Confidence 46999999999999999999999999999976432 233444 2655532 23344567898766431 1 12232
Q ss_pred HHhhCCC-----CCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 121 HVLLHPS-----SGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 121 ~v~~~~~-----~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..-.... .++. ..+....+-|.-++|...++.-+...+...|..+..+.+.
T Consensus 87 ~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni 143 (448)
T PRK03803 87 AAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI 143 (448)
T ss_pred HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc
Confidence 2221100 0111 1123345677777787777777777776666555444333
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.021 Score=52.79 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh---HHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP---LLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~---~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
++++|+|-|+ |.+|+.+.+.|.++||.|...-|+++.-+. +.+. .+.-..+.+++++.||.||-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 4589999976 999999999999999999999999876222 2221 23445677889999999987
Q ss_pred ec
Q 018694 112 IV 113 (351)
Q Consensus 112 ~v 113 (351)
+.
T Consensus 85 ~A 86 (327)
T KOG1502|consen 85 TA 86 (327)
T ss_pred eC
Confidence 76
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.032 Score=53.59 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCeEEEEccChhhHH-HHHHHHH-----CCCeEEEEeCCcccchhH-------Hhc-C----CcccCCHHHhhcCCCEEE
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLN-----AGYTVTVFNRTLSKAQPL-------LDI-G----AHLADSPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~-----~g~~V~~~dr~~~~~~~~-------~~~-g----~~~~~~~~~~~~~~DiIi 110 (351)
++||+|||.|+.+.. +...+.. .+.++.++|.++++.+.. .++ | +..++|.++++.++|+|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 478999999998876 3333332 244899999998876532 211 3 456889999999999999
Q ss_pred Eec
Q 018694 111 SIV 113 (351)
Q Consensus 111 ~~v 113 (351)
.+.
T Consensus 83 ~~~ 85 (442)
T COG1486 83 TQI 85 (442)
T ss_pred EEE
Confidence 998
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.16 Score=46.12 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=63.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCCh--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYP-- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~-- 116 (351)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |-..+.-..+.+. ++++-+.+.+..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~ 110 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFIT 110 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccC
Confidence 579999999999999999999995 799998774332222221 1100111111111 345555555221
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
....+.+. .+-++||++.-. +.....+.+.+...++.++.+.-.+
T Consensus 111 ~e~~~~ll~----------~~~D~VIdaiD~-~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 111 PDNVAEYMS----------AGFSYVIDAIDS-VRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred hhhHHHHhc----------CCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEECCcc
Confidence 12222221 134577776543 4444567777777788888663333
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.04 Score=50.10 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=57.3
Q ss_pred CCeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+++.|||-+ -+|..++..|.+.|..|+++... +.++.+..+++|+||.+++++.-+..
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~~------ 216 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVKG------ 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH------
Confidence 3689999874 57999999999999999998642 23567778899999999987654432
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 217 ----~~ik~gaiVIDvGin 231 (282)
T PRK14182 217 ----AWVKEGAVVIDVGMN 231 (282)
T ss_pred ----HHcCCCCEEEEeece
Confidence 235689999998743
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.018 Score=54.86 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc-hhH--Hhc----CCcccCCHHHhhcCCCEEEEec
Q 018694 44 PVCPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPL--LDI----GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 44 ~~~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~--~~~----g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.+.+..|||.|.|. |.+|..+++.|.+.|++|++++|..... ... ... .+.-..+...++.++|+||-+.
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 34445589999976 9999999999999999999999864321 100 000 1111112233456789998887
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.03 Score=51.84 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=29.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
||.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999998 699998764
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.023 Score=53.45 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=59.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--------CCeEE---EEeCCcccch-------hHHhc--CCc-----ccCCHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--------GYTVT---VFNRTLSKAQ-------PLLDI--GAH-----LADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--------g~~V~---~~dr~~~~~~-------~~~~~--g~~-----~~~~~~~~~ 103 (351)
+++|+++|+|.+|..+++.|.++ |.++. +.+++..... .+.+. +.. ...+.++..
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 47899999999999999998653 44433 3355433222 11100 000 111222222
Q ss_pred -c--CCCEEEEecCCh----hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEE
Q 018694 104 -S--QSDVVFSIVGYP----SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAI 166 (351)
Q Consensus 104 -~--~~DiIi~~vp~~----~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v 166 (351)
. +.|+||-|+|.. ....+.+ ..++..|..||..++.. .....++.+...+.++.|.
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~-------~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYI-------KQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHH-------HHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 2 479999998543 1122222 23455777788666532 1223455555555666654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.045 Score=49.91 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=49.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcCCcccCCH---HHhh------cCCCEEEEecCChhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHLADSP---HSLA------SQSDVVFSIVGYPSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~---~~~~------~~~DiIi~~vp~~~~~ 119 (351)
.+|.|+|+|.+|...++.+...|.. |++.++++++.+...+.|....-+. .+.+ ...|++|-|+..+..+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~ 201 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV 201 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHH
Confidence 5799999999999999988888986 8888888888776666665322111 1111 1356777766444444
Q ss_pred HHHhh
Q 018694 120 RHVLL 124 (351)
Q Consensus 120 ~~v~~ 124 (351)
...+.
T Consensus 202 ~~~~~ 206 (280)
T TIGR03366 202 RACLE 206 (280)
T ss_pred HHHHH
Confidence 44443
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.33 Score=39.09 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=75.8
Q ss_pred EEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCch
Q 018694 184 IFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSK 262 (351)
Q Consensus 184 ~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~ 262 (351)
+.+.|+++..+.++++++.+|. ++.+.+ ..-.....+..+..+....++..+..++++.|++.++..+++..
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~P------ 76 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLP------ 76 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHH------
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHH------
Confidence 4445599999999999999999 776654 44445566777777777788888999999999999776555432
Q ss_pred hhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 263 SLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
.+......+.+.......+-...+.|.+.+.+..+...-..|-...+|+.+.+.
T Consensus 77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~~ 130 (132)
T PF10728_consen 77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSRA 130 (132)
T ss_dssp HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 222222222221111111222235677777777776444336677777776654
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.018 Score=53.46 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=45.4
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~v 113 (351)
|||.|.| +|.+|..++..|.+.|++|++++|+++....+...++.. ..+..+++..+|+||.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5799997 599999999999999999999999876543332222211 112344556778888776
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.068 Score=51.41 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 589999999999999999999998 699998764
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=51.55 Aligned_cols=72 Identities=26% Similarity=0.510 Sum_probs=57.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||- .-+|..++..|.+.|..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~~------- 290 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVRG------- 290 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCCH-------
Confidence 68999987 557999999999999999998642 24677888999999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
+++++|.+|||+..
T Consensus 291 ---d~vK~GAvVIDVGI 304 (364)
T PLN02616 291 ---SWIKPGAVVIDVGI 304 (364)
T ss_pred ---HHcCCCCEEEeccc
Confidence 23569999999774
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.044 Score=48.36 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
+++|.|.|+ |.+|..+++.|.+.|++|++++|++++.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~ 44 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEA 44 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHH
Confidence 367989975 999999999999999999999999766544
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.16 Score=46.90 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=72.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH---HHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD---VRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~---~~~v~~~~ 126 (351)
.+|+|||.-.=-..+++.|.+.|++|.++.-+.+. ....|+...++.++++.++|+|+..+|...+ +...+...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 58999999999999999999999999997654322 2234788888888989999999999864321 11110000
Q ss_pred ----CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 127 ----SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 127 ----~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
..+....++++.+++ .+...+.. .+.+.++++.+++.
T Consensus 80 ~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~ 120 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVEL 120 (296)
T ss_pred CCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEE
Confidence 002334566776555 35554542 24445677777654
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.05 Score=49.59 Aligned_cols=72 Identities=19% Similarity=0.454 Sum_probs=56.4
Q ss_pred CeEEEEccC-hhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+++.|||-+ .+|..++..|.+. +..|+++... +.++.+.++++|+||.+++++.-+..
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~~--- 216 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIKE--- 216 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH---
Confidence 689999875 5799999999988 6789988642 23677778999999999987754332
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|+++||+..
T Consensus 217 -------~~ik~GavVIDvGi 230 (287)
T PRK14181 217 -------EMIAEKAVIVDVGT 230 (287)
T ss_pred -------HHcCCCCEEEEecc
Confidence 24569999999874
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.024 Score=52.57 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=63.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~ 128 (351)
+++.|.|+|-.|..+|..+...|.+|.++..+|=++-+..=.|..+. +.++++...|++|.|+..-..+. +-+.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkdVi~~eh~~---- 284 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKDVIRKEHFE---- 284 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcCccCHHHHH----
Confidence 46778899999999999999999999999998855444444477765 67888889999999995433221 1221
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.++++.++.+..
T Consensus 285 ----~MkDgaIl~N~G 296 (420)
T COG0499 285 ----KMKDGAILANAG 296 (420)
T ss_pred ----hccCCeEEeccc
Confidence 345677776655
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.047 Score=50.86 Aligned_cols=72 Identities=28% Similarity=0.477 Sum_probs=57.1
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||-+ -+|..++..|.+.|..|+++... +.++.+..+++|+||.+++++.-+..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~~------- 273 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVRG------- 273 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 689999875 57999999999999999988642 23567788999999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.+|||++.
T Consensus 274 ---d~vk~GavVIDVGi 287 (345)
T PLN02897 274 ---SWLKPGAVVIDVGT 287 (345)
T ss_pred ---HHcCCCCEEEEccc
Confidence 23468999999874
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.052 Score=49.57 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=59.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHH-------Hhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPH-------SLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~-------~~~-----~~~DiIi~~vp~~ 116 (351)
..++|+|+|.+|.+.+..-..+|. +++.+|.|+++.+..++.|++-.-++. |.+ ...|+-|.|+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 579999999999999999988887 799999999999988888765433333 222 1478888888777
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
+..++.+.
T Consensus 274 ~~m~~al~ 281 (375)
T KOG0022|consen 274 STMRAALE 281 (375)
T ss_pred HHHHHHHH
Confidence 77777666
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.1 Score=45.90 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-Cccc---CCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLA---DSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~---~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.++|.|||.|.++..=+..|.+.|.+|+++...-. .+..+...| +... -.. +.+..+++||.|+ +...+...+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaAT-dD~~vN~~I 102 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIAT-DDEKLNNKI 102 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECC-CCHHHHHHH
Confidence 36899999999999999999999999999976532 233343332 2211 122 3357899999999 555554433
Q ss_pred h
Q 018694 124 L 124 (351)
Q Consensus 124 ~ 124 (351)
.
T Consensus 103 ~ 103 (223)
T PRK05562 103 R 103 (223)
T ss_pred H
Confidence 3
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.061 Score=56.71 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=64.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~ 117 (351)
..||+|||+|.+|+.++..|+..|. +++++|-+.=....+..+ |-..+....+.+. ++++-|.+.+...
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I 411 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGV 411 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 3689999999999999999999998 688888764333223222 2111111222222 4455555552211
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEeccCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.++.+. ++ +..-.+||++..... .....+.+.+...++.++.+.+.|
T Consensus 412 -~~en~~----~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 412 -AAETID----AF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CHHHHH----HH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 111122 22 224457888775422 222345555555677777665443
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.081 Score=48.43 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|+|+|.+|..++++|+.+|. .|+++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 579999999999999999999998 699999764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.097 Score=51.39 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=66.9
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-ch----hHHhcCCcccC--CHH-----HhhcCCCEEEEecCChh-
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQ----PLLDIGAHLAD--SPH-----SLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~----~~~~~g~~~~~--~~~-----~~~~~~DiIi~~vp~~~- 117 (351)
||.|||.|..|.+.|..|.+.|++|+++|+.+.. .+ .+...|+.... ..+ +...++|+||..-.-+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 6999999999999999999999999999976432 22 24445655422 111 24567898887442222
Q ss_pred --HHHHHhhCCCCCcc-------cCC-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 118 --DVRHVLLHPSSGAL-------SGL-RPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 118 --~~~~v~~~~~~~i~-------~~l-~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.+..+-.... .+. ... ....+-|.-|+|...++.-+...+...|.
T Consensus 82 ~~~~~~a~~~~i-~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~ 136 (459)
T PRK02705 82 HPTLVELRERGI-EVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGL 136 (459)
T ss_pred CHHHHHHHHcCC-cEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 2222211100 111 111 22346777777877777766666655443
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.051 Score=55.90 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=32.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+||+|||+|..|...|..|++.|++|+++++++.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999998753
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.033 Score=53.20 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=44.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc-hhHHhcCC-cccCC---HHHhhcCCCEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGA-HLADS---PHSLASQSDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~~~~g~-~~~~~---~~~~~~~~DiIi~ 111 (351)
|++|+|||.|..|..++....+.|++|+++|.+++.. ..+.+.-+ ....+ +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 5789999999999999999999999999999876542 22222211 11233 3455678897744
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.29 Score=48.03 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CC-----CCccc
Q 018694 215 GQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DF-----EPGFF 281 (351)
Q Consensus 215 a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~~ 281 (351)
+.++|.+.|.+....+.+++|.+.+.++ .++++.++.++.+.+. ..++.++...+.+.+. +. .+.|.
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~ 383 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFK 383 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHH
Confidence 7889999999999999999999997665 4588899999998886 5677776655544332 11 11121
Q ss_pred --hhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 282 --VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 282 --~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+.......+.++..+-+.|+|+|.+.+....+...+.. .-...+++..|...|
T Consensus 384 ~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~----~~~anliqaqRd~FG 438 (459)
T PRK09287 384 DILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA----RLPANLIQAQRDYFG 438 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHHHhHhC
Confidence 22223334688999999999999998888666665533 223457777776664
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.03 Score=54.17 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=47.0
Q ss_pred CeEEEEccChhhH-HHHHHHHHC-----CCeEEEEeCC-cccchhHHh--------cC----CcccCCHHHhhcCCCEEE
Q 018694 50 TRIGWIGTGVMGR-SMCAHLLNA-----GYTVTVFNRT-LSKAQPLLD--------IG----AHLADSPHSLASQSDVVF 110 (351)
Q Consensus 50 ~kI~iIG~G~mG~-~ia~~L~~~-----g~~V~~~dr~-~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi 110 (351)
|||+|||+|+.-+ .+...|... +-+|+++|++ +++++.... .| +..+++.++++.++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6999999999744 355555542 2489999999 777644211 12 455779999999999999
Q ss_pred Eec
Q 018694 111 SIV 113 (351)
Q Consensus 111 ~~v 113 (351)
++.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 998
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.08 Score=50.86 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=29.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 68888876
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.022 Score=54.76 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 47 PTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 47 ~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
+.+|||.|+|. |.+|..+++.|.+.|++|++++|+...
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 34689999975 999999999999999999999998754
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.058 Score=52.24 Aligned_cols=111 Identities=9% Similarity=0.014 Sum_probs=69.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEE--------Ee---CCcccch---hHHhc-------------CCcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTV--------FN---RTLSKAQ---PLLDI-------------GAHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~--------~d---r~~~~~~---~~~~~-------------g~~~~~~~~~ 101 (351)
..||+|-|.|++|...|+.|.+.|..|+. || .+.++++ ..++. |....+ .++
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~ 306 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKK 306 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-Ccc
Confidence 36899999999999999999999999887 66 4444321 11111 122222 223
Q ss_pred h-hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 102 L-ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~-~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+ ..+||+.+-|--...-..+... .+.. .+-++|+...|+ |.+. +-.+.+.++|+.|+.-
T Consensus 307 ~~~~~cDVliPcAl~n~I~~~na~----~l~~--~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vPD 366 (445)
T PRK14030 307 PWEQKVDIALPCATQNELNGEDAD----KLIK--NGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAPG 366 (445)
T ss_pred ceeccccEEeeccccccCCHHHHH----HHHH--cCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeCc
Confidence 2 2479998888733332222222 2211 145688999998 6554 4556677789888854
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.049 Score=48.90 Aligned_cols=61 Identities=31% Similarity=0.469 Sum_probs=46.6
Q ss_pred ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc-CCCEEEEecCCh
Q 018694 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS-QSDVVFSIVGYP 116 (351)
Q Consensus 56 G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~~DiIi~~vp~~ 116 (351)
|.|-+|+++...|.+.||+|++..|++.+.+......+...+..++... ++|+||--..++
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~ 67 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP 67 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence 7899999999999999999999999987766544433444445555555 699999877444
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.21 Score=48.79 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCccc--chhHHhcCCccc-C-CHHHhhcCCCEEEEecC--C-hhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSK--AQPLLDIGAHLA-D-SPHSLASQSDVVFSIVG--Y-PSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~--~~~~~~~g~~~~-~-~~~~~~~~~DiIi~~vp--~-~~~~ 119 (351)
++||.|||.|..|.+-+..|... |++|+++|..+.. .+.+.+ |+... . ...+.+.++|+||..-. + ...+
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~ 85 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEI 85 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHH
Confidence 36899999999999999999887 5889999976432 123433 66552 1 12344577897776542 1 1223
Q ss_pred HHHhhCCC-----CCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPS-----SGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~-----~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
........ .++. ..+....+-|.-|+|...++.-+...+...+..+
T Consensus 86 ~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 86 QQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 22221100 0111 1123345677777887777776777776555443
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.097 Score=53.74 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=62.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCCh--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYP-- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~-- 116 (351)
.||+|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |-..+.-..+.+. ++++-|.+.+..
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~ 123 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGIN 123 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999999998 688888764222222222 2111111112111 345555554222
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEEeccCC
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..+.+++ ..-++|||+.... ...-..+.+.....++.++.+...
T Consensus 124 ~~n~~~~l-----------~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~ 169 (679)
T PRK14851 124 ADNMDAFL-----------DGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPL 169 (679)
T ss_pred hHHHHHHH-----------hCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecc
Confidence 2222222 2445788877542 222335565666677878776443
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.022 Score=54.43 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
|++|.|||.|..|.+.|..|++.|++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 679999999999999999999999999999988653
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.067 Score=49.03 Aligned_cols=72 Identities=17% Similarity=0.409 Sum_probs=56.0
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.|||- ..+|..++..|.+. +..|+++... +.++.+.++++|+||.+++++.-+..
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~--- 224 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVKP--- 224 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccCH---
Confidence 68999987 56799999999987 6789988542 23677788999999999977664432
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 225 -------~~ik~gavVIDvGi 238 (297)
T PRK14168 225 -------EWIKPGATVIDVGV 238 (297)
T ss_pred -------HHcCCCCEEEecCC
Confidence 23568999999874
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.077 Score=47.86 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
++++.|-|+ +.+|..+|+.|+++|++|+++.|+.++++.++++
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 345666676 9999999999999999999999999998887654
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.068 Score=48.85 Aligned_cols=73 Identities=19% Similarity=0.427 Sum_probs=56.3
Q ss_pred CeEEEEccC-hhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++|.|||-+ -+|..++..|.+. +..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~~--- 220 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------------SKNLKKECLEADIIIAALGQPEFVKA--- 220 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------------CCCHHHHHhhCCEEEEccCCcCccCH---
Confidence 689999875 5699999999987 5688888542 23677788899999999987765442
Q ss_pred CCCCCcccCCCCCcEEEecCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+++|.++||++..
T Consensus 221 -------~~vk~gavVIDvGin 235 (293)
T PRK14185 221 -------DMVKEGAVVIDVGTT 235 (293)
T ss_pred -------HHcCCCCEEEEecCc
Confidence 235689999998743
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.092 Score=50.66 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=63.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh--cCCCEEEEec--CCh-hHH---HH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA--SQSDVVFSIV--GYP-SDV---RH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~--~~~DiIi~~v--p~~-~~~---~~ 121 (351)
|||.|+|.|.-|.+.|+.|. .|++|+++|..+.... ..+.|+... . ++.. +++|+||..- |+. ..+ ++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 68999999999999999999 9999999996543221 222355543 2 2223 4688776642 221 112 22
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
++... ++...+.+..+-|.-|+|...+..-+...+...+
T Consensus 77 i~~~~--e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LISEY--DYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred HhhHH--HHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 22100 1111112345777777787777766777776544
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.11 Score=46.69 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=67.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhc----CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDI----GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~----g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.-||||. | .++..+.+.|.. |+.+|.++..++..+++ ++...-...+.-...|+|+... ....+..++.
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani-~~~~~~~l~~ 197 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANI-LANPLLELAP 197 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcC-cHHHHHHHHH
Confidence 5799999998 6 445556666664 99999998877655443 3310000000001478887655 5555666776
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++...++++..++-. .........+.+.+...|..++.
T Consensus 198 ----~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 198 ----DLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----HHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 777778887776643 23244455666666666665553
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.15 Score=48.69 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.1
Q ss_pred CCCCCeEEEE----c-cChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 46 CPTNTRIGWI----G-TGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 46 ~~~~~kI~iI----G-~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
..+++||.|+ | +|.+|..+++.|.+.||+|++.+|++..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 3456899999 6 5999999999999999999999998654
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.15 Score=53.84 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCeEEEEccChhhHHH-HHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccC-CHHHhhcCCCEEEEecC---ChhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSM-CAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLAD-SPHSLASQSDVVFSIVG---YPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~i-a~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp---~~~~~~~v 122 (351)
|.+|.|||.|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+||..-. ....+..+
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a 83 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSA 83 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHH
Confidence 3469999999999997 9999999999999997643 33446556765532 23355667898876432 11223322
Q ss_pred hhCCC-----CCcccC-CC-CCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 123 LLHPS-----SGALSG-LR-PGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 123 ~~~~~-----~~i~~~-l~-~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..... .++... .. ...+-|.-|+|...++.-+...+...|.
T Consensus 84 ~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 84 KSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 22100 011111 12 2457787888877777777777765553
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.077 Score=48.65 Aligned_cols=72 Identities=24% Similarity=0.408 Sum_probs=55.9
Q ss_pred CeEEEEccC-hhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.|||-+ .+|..++..|.+. +..|+++... +.++.+..+++|+||.++.++.-+..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~--- 220 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------------TDDLAAKTRRADIVVAAAGVPELIDG--- 220 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH---
Confidence 689999874 5799999999877 6789988542 23567788999999999987764432
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||+..
T Consensus 221 -------~~ik~gaiVIDvGi 234 (297)
T PRK14167 221 -------SMLSEGATVIDVGI 234 (297)
T ss_pred -------HHcCCCCEEEEccc
Confidence 24568999999874
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.082 Score=47.11 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=33.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
|+|.|+|+ |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 57889975 9999999999999999999999997765544
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.028 Score=54.27 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=31.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999999999999999999999999999974
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.087 Score=47.89 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=34.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
++|.|.|+ |.+|..+++.|++.|++|++.+|+++..+.+.+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 46777776 999999999999999999999999877666544
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.047 Score=52.29 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=45.4
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-------CCcc-------cCCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-------GAHL-------ADSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-------g~~~-------~~~~~~~~~~~DiIi~~ 112 (351)
+|||.|.| +|-+|+.+++.|.+. |++|++++|+.++...+... ++.. .....++++++|+||-|
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 37899997 599999999999988 59999999886654433221 1111 11234556678988877
Q ss_pred c
Q 018694 113 V 113 (351)
Q Consensus 113 v 113 (351)
.
T Consensus 94 A 94 (386)
T PLN02427 94 A 94 (386)
T ss_pred c
Confidence 7
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.029 Score=53.30 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=32.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|||.|||+|..|.+.|..|++.|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998865
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.047 Score=47.98 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=34.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
||+.|.|+ |.+|.++++.|.+.|++|++.+|+.++.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57889976 99999999999999999999999987665544
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.083 Score=46.73 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
|+++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 457788864 9999999999999999999999997665443
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.061 Score=50.81 Aligned_cols=88 Identities=14% Similarity=0.241 Sum_probs=54.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHH-HCCCe---EEEEe--CCcccchhHHhcCCcccCCHH-HhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLL-NAGYT---VTVFN--RTLSKAQPLLDIGAHLADSPH-SLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~-~~g~~---V~~~d--r~~~~~~~~~~~g~~~~~~~~-~~~~~~DiIi~~vp~~~~~~~ 121 (351)
+||+|+|+ |.+|..+.+.|. +..++ +.++. ++..+...+..+...+....+ +...+.|++|+|. .....++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~-g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQ-GGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcC-CHHHHHH
Confidence 47999998 999999999998 66665 33333 222222223222222222212 2467899999999 6666665
Q ss_pred HhhCCCCCcccCCCCC--cEEEecCC
Q 018694 122 VLLHPSSGALSGLRPG--GIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~--~~ii~~s~ 145 (351)
+.. ... ..| .++||.++
T Consensus 80 ~~p----~~~---~aG~~~~VIDnSS 98 (366)
T TIGR01745 80 IYP----KLR---ESGWQGYWIDAAS 98 (366)
T ss_pred HHH----HHH---hCCCCeEEEECCh
Confidence 555 332 366 67998774
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.056 Score=54.02 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=33.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
.+|.|.|+ |.+|..+++.|++.|++|++++|+.++.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL 120 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 45777765 9999999999999999999999998776554
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.74 Score=41.20 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEE--------eCCcccchhHHh---c-CC--cccC----------CHH-Hhh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVF--------NRTLSKAQPLLD---I-GA--HLAD----------SPH-SLA- 103 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~--------dr~~~~~~~~~~---~-g~--~~~~----------~~~-~~~- 103 (351)
+|+.|-|.|++|...++.|.+.|..|+.+ |.+.-..+.+.+ + +. .... +.+ +++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~ 112 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILS 112 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccccc
Confidence 68999999999999999999999876654 433323333332 2 22 2111 121 444
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCC-CCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLR-PGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~-~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+||+++-|--...-..+.+. . .+. .-++|+...|. |.+.+... .+.++|+.+++-
T Consensus 113 ~~~DiliP~A~~~~I~~~~~~----~---~i~~~akiIvegAN~-p~t~~a~~-~L~~rGI~viPD 169 (244)
T PF00208_consen 113 VDCDILIPCALGNVINEDNAP----S---LIKSGAKIIVEGANG-PLTPEADE-ILRERGILVIPD 169 (244)
T ss_dssp SSSSEEEEESSSTSBSCHHHC----H---CHHTT-SEEEESSSS-SBSHHHHH-HHHHTT-EEE-H
T ss_pred ccccEEEEcCCCCeeCHHHHH----H---HHhccCcEEEeCcch-hccHHHHH-HHHHCCCEEEcc
Confidence 589999999733222222221 0 121 25688888887 44444443 777789888744
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=47.27 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=62.3
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh-hHHHHHhhCCCC
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP-SDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~-~~~~~v~~~~~~ 128 (351)
|++|| |+|.+|..-|+.|...|..|++-..+|=.+-+..=.|..+ .+.+|++++.|+++.++..- ..+.+-+.
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTGc~dii~~~H~~---- 289 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTGCKDIITGEHFD---- 289 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccCCcchhhHHHHH----
Confidence 66666 9999999999999999999999988874332323336665 47999999999999988532 23334443
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
+ ++.+.++.++.-.
T Consensus 290 ~----mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 290 Q----MKNDAIVCNIGHF 303 (434)
T ss_pred h----CcCCcEEeccccc
Confidence 3 4567777766544
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=46.55 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=33.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56888875 99999999999999999999999987665443
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=48.24 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=53.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|+|+|.+|...++.+...|.. |.++++++++++...+.. ..+..++.-...|+||-|+..+..+...++
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~---- 219 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLVR---- 219 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHHH----
Confidence 4699999999999999888888886 556687776654433222 111111122357999999965555565554
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.+.++..++.+.
T Consensus 220 ----~l~~~G~iv~~G 231 (308)
T TIGR01202 220 ----RLAKGGEIVLAG 231 (308)
T ss_pred ----hhhcCcEEEEEe
Confidence 234555555544
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.063 Score=50.69 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=33.4
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccch
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ 86 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~ 86 (351)
..|||.|.| +|.+|+.+++.|.+.|++|++.+|+.+..+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~ 48 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL 48 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 347999997 599999999999999999999888865443
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.087 Score=48.84 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=44.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh---c-----C-------CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD---I-----G-------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~---~-----g-------~~~~~~~~~~~~~~DiIi~~v 113 (351)
++|.|.| +|-+|+.+++.|.+.|++|++.+|+......... . . +.-....+++++++|+||.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence 6899997 6999999999999999999998887654221111 0 1 111123445567788888876
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.048 Score=48.65 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=34.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46889988 99999999999999999999999987665543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.066 Score=48.72 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=43.5
Q ss_pred EEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--cCCHHHhhcCCCEEEEecC
Q 018694 52 IGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 52 I~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--~~~~~~~~~~~DiIi~~vp 114 (351)
|.|.| +|.+|+.+++.|.+.|++|++.+|++.........+... .....+.+.++|+||.|..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 35665 699999999999999999999999877644322111110 1233445667899888884
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.036 Score=53.15 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=32.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.++|.|||+|-.|.++|..|.+.|++|+++++.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999998864
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.13 Score=46.56 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
|+++.|.|+ |.+|..+++.|.+.|++|++.+|+++..+.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 356777765 99999999999999999999999876655443
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.094 Score=51.31 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=50.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc---------------------chhHHhcCCcc--------cCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------------------AQPLLDIGAHL--------ADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~---------------------~~~~~~~g~~~--------~~~~ 99 (351)
-.||+|||+|.-|.+-|..|...||.|+++++.+.. ++.+.+.|+.+ .-+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~ 202 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITL 202 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCH
Confidence 379999999999999999999999999999887542 12233334322 3367
Q ss_pred HHhhcCCCEEEEecC
Q 018694 100 HSLASQSDVVFSIVG 114 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp 114 (351)
+++.++.|.|++|+.
T Consensus 203 ~~L~~e~Dav~l~~G 217 (457)
T COG0493 203 EELLKEYDAVFLATG 217 (457)
T ss_pred HHHHHhhCEEEEecc
Confidence 788888899999993
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.15 Score=49.48 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEE-Ee----------CCcccch---hHHhc------------CCcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTV-FN----------RTLSKAQ---PLLDI------------GAHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~-~d----------r~~~~~~---~~~~~------------g~~~~~~~~~~ 102 (351)
.+||.|.|.|++|...|+.|.+.|..|+. .| .+.+.+. .+.+. +.... +.++.
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~ 306 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARP 306 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCccc
Confidence 47899999999999999999999999886 45 2222221 11111 22222 22332
Q ss_pred -hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCC-cEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 103 -ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPG-GIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 103 -~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~-~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
-.+||+++-|.-...-..+... ++. .++ .+|+...|+ |.+.+. .+.+.++++.++.-
T Consensus 307 ~~~~cDIliPaAl~n~I~~~na~----~l~---a~g~~~V~EgAN~-P~t~eA-~~~L~~rgI~~~PD 365 (444)
T PRK14031 307 WGEKGDIALPSATQNELNGDDAR----QLV---ANGVIAVSEGANM-PSTPEA-IKVFQDAKILYAPG 365 (444)
T ss_pred ccCCCcEEeecccccccCHHHHH----HHH---hcCCeEEECCCCC-CCCHHH-HHHHHHCCcEEeCh
Confidence 2479999988843333333333 332 123 367777777 666554 44556678888754
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.1 Score=51.57 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
..+||.|||.|..|...|..|.+.|++|+++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34799999999999999999999999999999864
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.27 Score=44.04 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=46.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC--cccCCHHHhh---cCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA--HLADSPHSLA---SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~--~~~~~~~~~~---~~~DiIi~~vp~~~~~~ 120 (351)
.++-|+|+|..+.++++.....||+|+++|..++......-.++ .....+++.+ ...+.|++.+ .+...+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~t-h~h~~D 175 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLT-HDHALD 175 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEe-CChHHH
Confidence 68999999999999999999999999999876553221110111 1122334333 2557777777 554444
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.041 Score=52.68 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=32.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+++|.|||+|..|.+.|..|++.|++|+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998764
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.051 Score=38.26 Aligned_cols=30 Identities=40% Similarity=0.612 Sum_probs=27.2
Q ss_pred EEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 54 WIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 54 iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|||+|.-|.+.|..|.+.|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999999854
|
... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.12 Score=54.79 Aligned_cols=66 Identities=29% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc---------------------chhHHhcCCcccC--------C
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------------------AQPLLDIGAHLAD--------S 98 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~---------------------~~~~~~~g~~~~~--------~ 98 (351)
--.||+|||.|.-|.+-|..|-+.||.|++|.|+.-- ++.+..+|+.+.+ +
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs 1863 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS 1863 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccccc
Confidence 3478999999999999999999999999999987421 1222333554433 5
Q ss_pred HHHhhcCCCEEEEec
Q 018694 99 PHSLASQSDVVFSIV 113 (351)
Q Consensus 99 ~~~~~~~~DiIi~~v 113 (351)
.+++.+.-|.|++|+
T Consensus 1864 ~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1864 LDELKKENDAIVLAT 1878 (2142)
T ss_pred HHHHhhccCeEEEEe
Confidence 677888899999998
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=46.86 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=34.7
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
+++|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 356888865 999999999999999999999999876655443
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.069 Score=49.99 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~ 78 (351)
|+||+|.|+|.+|..+.+.|.++++ ++.++
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vv 32 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVV 32 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEE
Confidence 5799999999999999999987542 45555
|
|
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.7 Score=35.00 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=69.1
Q ss_pred CCeEEEE---ccCh---hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh------
Q 018694 49 NTRIGWI---GTGV---MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP------ 116 (351)
Q Consensus 49 ~~kI~iI---G~G~---mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~------ 116 (351)
|+||.|| +.|+ |...++..+.+.|.+|.+++.+... .. .+.++|.|++++|..
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~--------------~~-~~~~~d~iilgsPty~~~~~~ 65 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK--------------VE-DVLEADAVAFGSPSMDNNNIE 65 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC--------------HH-HHhhCCEEEEECCCcCCCcCC
Confidence 4566666 3343 5566777777778888887765321 12 356899999999741
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCC-C--ChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHH
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTT-S--EPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESV 192 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~-~--~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~ 192 (351)
..+..++. .+.....+++.++-.++ + .......+.+.+...|..++.. +.+-...+++.
T Consensus 66 ~~~~~~~~~----~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~-------------~~~~~~p~~~~ 128 (141)
T PRK05569 66 QEEMAPFLD----QFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD-------------LAVNESPNKEE 128 (141)
T ss_pred hHHHHHHHH----HhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee-------------EEEccCCCHHH
Confidence 24666776 54432224544333333 2 1223445666666667665531 11212246677
Q ss_pred HHHHHHHHHhh
Q 018694 193 VQKLNPLFALM 203 (351)
Q Consensus 193 ~~~v~~ll~~~ 203 (351)
.+.+.++-+.+
T Consensus 129 ~~~~~~~g~~l 139 (141)
T PRK05569 129 LNSAKELGKKL 139 (141)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.097 Score=46.91 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
+++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA 43 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36788885 699999999999999999999999977665543
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.084 Score=56.44 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc---------------------chhHHhcCCccc--------CCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------------------AQPLLDIGAHLA--------DSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~~~ 99 (351)
..||+|||+|.-|.+-|..|++.||+|+++++.+.. ++.+.+.|+.+. -+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~ 385 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL 385 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH
Confidence 479999999999999999999999999999986421 122333354421 245
Q ss_pred HHhhc-CCCEEEEecCC
Q 018694 100 HSLAS-QSDVVFSIVGY 115 (351)
Q Consensus 100 ~~~~~-~~DiIi~~vp~ 115 (351)
+++.. ..|.||+++..
T Consensus 386 ~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 386 EDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHhccccCCEEEEeCCC
Confidence 55544 58999999943
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.041 Score=52.77 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+++|.|||+|..|..+|..|++.|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999998
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.092 Score=46.01 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.6
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
|+++.|.| .|.+|..++..|++.|++|++++|+++..+.+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL 41 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH
Confidence 35677776 69999999999999999999999998765444
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.047 Score=51.88 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+++|.|||+|..|..+|..|.+.|++|++++++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357899999999999999999999999999998754
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=47.24 Aligned_cols=72 Identities=19% Similarity=0.418 Sum_probs=54.6
Q ss_pred CeEEEEccC-hhhHHHHHHHHH----CCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLN----AGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~----~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++|.|||-+ -+|..++..|.+ .|..|+++.... .++++.+.++|+||.+++++.-+..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~li~~--- 222 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARFITA--- 222 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCccCH---
Confidence 689999875 579999999987 678888887542 3567788999999999976632221
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 223 -------~~vk~GavVIDVgi 236 (295)
T PRK14174 223 -------DMVKPGAVVIDVGI 236 (295)
T ss_pred -------HHcCCCCEEEEeec
Confidence 23478999999874
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.095 Score=49.30 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=43.7
Q ss_pred CeEEEEccChhhHHHHHHHHH-C-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-A-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp 114 (351)
.+|.|+|+|.+|...+..++. . +.+|+++++++++.+.+.+.+... ..++..+ ..|+||-|+.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G 231 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVG 231 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCC
Confidence 579999999999998887765 3 457999999988877665433221 1112222 3688888885
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.17 Score=49.07 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=66.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCC----------cccchhHH---hc-------------CCcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRT----------LSKAQPLL---DI-------------GAHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~----------~~~~~~~~---~~-------------g~~~~~~~~~ 101 (351)
.+||.|=|.|++|...|+.|.+.|..|+ +.|.+ .++++.+. +. +....+..+-
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~ 316 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKP 316 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCc
Confidence 3689999999999999999999999887 66776 33332211 11 1222221111
Q ss_pred hhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.-.+||+.+-|--...-..+... .+.. ..-++|+.-.|. |.+. +-.+.+.++|+.|+..
T Consensus 317 ~~~~cDI~iPcA~~n~I~~~~a~----~l~~--~~ak~V~EgAN~-p~t~-eA~~~L~~~GI~~~PD 375 (454)
T PTZ00079 317 WEVPCDIAFPCATQNEINLEDAK----LLIK--NGCKLVAEGANM-PTTI-EATHLFKKNGVIFCPG 375 (454)
T ss_pred ccCCccEEEeccccccCCHHHHH----HHHH--cCCeEEEecCCC-CCCH-HHHHHHHHCCcEEECh
Confidence 22479988888722221122222 1211 134578888887 5444 4556667789888854
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.064 Score=54.22 Aligned_cols=67 Identities=31% Similarity=0.470 Sum_probs=47.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc---------------------cchhHHhcCCcccC--------CH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS---------------------KAQPLLDIGAHLAD--------SP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~---------------------~~~~~~~~g~~~~~--------~~ 99 (351)
..+|.|||+|..|...|..|.+.|++|+++++.+. +++.+.+.|+.... +.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~ 216 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITL 216 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH
Confidence 47899999999999999999999999999996432 22334444543211 12
Q ss_pred HHhhcCCCEEEEecCC
Q 018694 100 HSLASQSDVVFSIVGY 115 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp~ 115 (351)
++.....|+||+++..
T Consensus 217 ~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 217 EQLEGEFDAVFVAIGA 232 (564)
T ss_pred HHHHhhCCEEEEeeCC
Confidence 3333468999999954
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=48.46 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=23.4
Q ss_pred eEEEEccChhhHHHHHHHHHCC----CeEEEE
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAG----YTVTVF 78 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g----~~V~~~ 78 (351)
||+|+|+|.+|..+.+.|.+.+ ++|+..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 6999999999999999988764 666644
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.05 Score=52.08 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
..++|.|||+|..|...|..|.+.|++|+++++.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3468999999999999999999999999999987643
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.15 Score=45.17 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=33.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 67888875 9999999999999999999999987765543
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.39 Score=46.85 Aligned_cols=115 Identities=11% Similarity=0.138 Sum_probs=67.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhcCCcccC--CHHHhhcCCCEEEEecCCh---hHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYP---SDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~---~~~~~v 122 (351)
.+|.|||.|..|.+.++.|.+.|++|+++|..+.. .+.+ +.|+.... ...+.+.+.|+||..-.-+ ..+...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 85 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAA 85 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHH
Confidence 57999999999999999999999999999975432 2233 23654422 2234456778655433111 222222
Q ss_pred hhCCC-----CCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 123 LLHPS-----SGALS-GLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 123 ~~~~~-----~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
..... .++.. ......+-|.-++|...++.-+...+...+..+
T Consensus 86 ~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 86 ADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred HHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 22100 01111 122345667778887777777777776555443
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.063 Score=51.80 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
...+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 347899999999999999999999999999998754
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.12 Score=47.08 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=55.6
Q ss_pred CeEEEEccC-hhhHHHHHHHHH----CCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLN----AGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~----~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+++.|||-+ -+|..++..|.+ .+..|+++.... .++.+.++++|+||.+++.+.-+..
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~~--- 220 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVTA--- 220 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCCH---
Confidence 689999874 569999999998 677899887532 3577888999999999976654332
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+++++.++||++.
T Consensus 221 -------~~vk~GavVIDVGi 234 (286)
T PRK14184 221 -------DMVKPGAVVVDVGI 234 (286)
T ss_pred -------HHcCCCCEEEEeee
Confidence 23468999999873
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.072 Score=50.19 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccch-----hHHhc--CC-------cccCCHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-----PLLDI--GA-------HLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-----~~~~~--g~-------~~~~~~~~~~~~~DiIi~~ 112 (351)
.+++|.|.|+ |.+|+.++..|.+.|++|++..|+.+... .+... .+ .-..+..++++.+|+||-+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 3578999987 99999999999999999999998765421 11100 11 1112334556778888888
Q ss_pred cC
Q 018694 113 VG 114 (351)
Q Consensus 113 vp 114 (351)
..
T Consensus 89 A~ 90 (342)
T PLN02214 89 AS 90 (342)
T ss_pred cC
Confidence 73
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.16 Score=46.64 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=33.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|++.|++|++.+|+.+..+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56777765 99999999999999999999999977665543
|
|
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.68 Score=44.90 Aligned_cols=113 Identities=24% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHH-hhcCCCEEEEecCC---hhHHHHH
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHS-LASQSDVVFSIVGY---PSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~-~~~~~DiIi~~vp~---~~~~~~v 122 (351)
+.||-|||.|..|.+ +|..|.+.|++|.+.|..... .+.+.++|+.+...-++ -+.+.|.||....- ...+..+
T Consensus 7 ~~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A 86 (459)
T COG0773 7 LPKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEIVAA 86 (459)
T ss_pred CceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHHHHH
Confidence 347999999999976 999999999999999976543 56677778776543333 25567776665522 2233333
Q ss_pred hhCCC-----CCcc-cCCC-CCcEEEecCCCChhHHHHHHHHHhcC
Q 018694 123 LLHPS-----SGAL-SGLR-PGGIIVDMTTSEPSLASELSAAASSK 161 (351)
Q Consensus 123 ~~~~~-----~~i~-~~l~-~~~~ii~~s~~~~~~~~~l~~~~~~~ 161 (351)
.+... .+++ +.+. +..+-|.-+-|...++.-+...+...
T Consensus 87 ~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~ 132 (459)
T COG0773 87 LERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAA 132 (459)
T ss_pred HHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhC
Confidence 33100 0001 1122 33355555557666666666666544
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.12 Score=47.12 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=31.0
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
++.|. |.|.+|.+++..|++.|++|++.+|+++..+.+
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~ 46 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQA 46 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35555 579999999999999999999999987665443
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.16 Score=45.40 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=45.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHH-h--cC--------CcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLL-D--IG--------AHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~-~--~g--------~~~~~~~~~~~~~~DiIi~~vp 114 (351)
-.||.|+|.|++|.+.|..+...|. ++.++|.++++++.-. + .| +....|. .+.++++++|+...
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVIITAG 97 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEEecC
Confidence 4699999999999999999887776 8999999988754311 1 01 1222222 23457899998874
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.29 Score=48.52 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=31.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.+||.|||+|..|...|..|.+.|++|+++++.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3699999999999999999999999999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.057 Score=50.34 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=30.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
.+|.|||+|--|..+|..|++.|++|+++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 37999999999999999999999999999998654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.05 Score=50.23 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeE---EEEe---CCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTV---TVFN---RTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V---~~~d---r~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
.++|+| |+ |.+|..|.+.|.+++++| .+++ ++..+.-.+..+.+.+..-.++..++.|++|+ . .....++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-a-g~~~s~~ 79 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-A-GKMAQAE 79 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-c-CHHHHHH
Confidence 478999 98 999999999999999854 3443 33333333333333333323334578999999 7 5555555
Q ss_pred HhhCCCCCcccCCCCCcEEEecCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
... . +...|.++||.|+
T Consensus 80 ~ap----~---a~~aG~~VIDnSs 96 (322)
T PRK06901 80 HLA----Q---AAEAGCIVIDLYG 96 (322)
T ss_pred HHH----H---HHHCCCEEEECCh
Confidence 544 2 2357899999774
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.051 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|+|.|||+|-.|.++|..|.+.|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.16 Score=47.96 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=45.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C-----------CcccCCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G-----------AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g-----------~~~~~~~~~~~~~~DiIi~~ 112 (351)
-++|.|.|+ |.+|+.++..|.+.|++|++.+|+.+....+... + +.-....++++..+|+||-+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~ 84 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHV 84 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEe
Confidence 368999974 9999999999999999999998886554332110 1 11112344566678888877
Q ss_pred c
Q 018694 113 V 113 (351)
Q Consensus 113 v 113 (351)
.
T Consensus 85 A 85 (351)
T PLN02650 85 A 85 (351)
T ss_pred C
Confidence 6
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.18 Score=45.51 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=34.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888865 99999999999999999999999987765543
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.033 Score=51.16 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=37.8
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~v 113 (351)
|||.|+| .|.+|.++...|.+.|++|+.++|+.-.+.. .....+.+. .+|+||.|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d--------~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTD--------PEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTS--------HHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCC--------HHHHHHHHHHhCCCeEeccc
Confidence 7999999 5999999999999999999999877322111 112223322 589999997
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.38 Score=50.53 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred CCeEEEEccChhhHHHHHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN 70 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~ 70 (351)
..+|+++|+|.+|..+.+.|.+
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~ 479 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAR 479 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHH
Confidence 3689999999999999999865
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.06 Score=51.50 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=31.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+|.|||+|..|.++|..|++.|++|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998753
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.085 Score=48.49 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=32.8
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
|+|.|.| +|-+|+.++..|.+.|++|.+.+|.......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 3589998 5999999999999999999999998765443
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.8 Score=37.62 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
|+.++++..+++.++|+|+.-.|+...-..+++ ++.+.+.+|.++-+.+++......++.+...+...++.+ ..
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiik----kfiddipegaivthactipttkf~kifed~gredlnvts--yh 199 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIK----KFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTS--YH 199 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHH----HHHhcCCCCceEeeecccchHHHHHHHHHhCccccceec--cC
Confidence 356677778889999999999998876666777 777778899999999888554455555554433333322 11
Q ss_pred CCchhhccCceeEEecC--CHHHHHHHHHHHH
Q 018694 172 GGDRGAKTGTLAIFAGG--DESVVQKLNPLFA 201 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 201 (351)
++..-...|+ +++..| ++++.+.+-++-+
T Consensus 200 pg~vpemkgq-vyiaegyaseeavn~lyelg~ 230 (343)
T COG4074 200 PGTVPEMKGQ-VYIAEGYASEEAVNALYELGE 230 (343)
T ss_pred CCCCccccCc-EEEecccccHHHHHHHHHHHH
Confidence 2222223466 555555 6666666655544
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.1 Score=46.13 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
+++.|.|+ |.+|..++..|++.|++|++++|++++.+.+.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLA 50 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57888987 89999999999999999999999977665544
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.19 Score=46.79 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=44.7
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh----cC-----------CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD----IG-----------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~----~g-----------~~~~~~~~~~~~~~DiIi~~v 113 (351)
++|.|.| +|.+|+.++..|.+.|++|++..|+++..+.... .+ +.-..+.+++++.+|+||-+.
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A 85 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTA 85 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeC
Confidence 6788887 5999999999999999999988888654332211 01 111223345566788888877
Q ss_pred C
Q 018694 114 G 114 (351)
Q Consensus 114 p 114 (351)
.
T Consensus 86 ~ 86 (325)
T PLN02989 86 S 86 (325)
T ss_pred C
Confidence 3
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.21 Score=46.74 Aligned_cols=87 Identities=23% Similarity=0.229 Sum_probs=57.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHH-hhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHS-LASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~-~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|.|+|.+|...++.....|..|++.++++++.+.+++.|....-+..+ .....|+++.++..+..+...+.
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~~---- 242 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPPALE---- 242 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHHHHH----
Confidence 5799999999999888877788989998999998888777777643322111 11246777777755544444443
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.+.++..++...
T Consensus 243 ----~l~~~G~~v~~G 254 (329)
T TIGR02822 243 ----ALDRGGVLAVAG 254 (329)
T ss_pred ----hhCCCcEEEEEe
Confidence 334555555443
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 351 | ||||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 2e-35 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 3e-32 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 4e-32 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 1e-30 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 1e-28 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 3e-28 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 3e-27 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 1e-26 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 8e-22 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 6e-20 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 3e-18 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 3e-18 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 4e-14 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 5e-14 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 3e-10 | ||
| 4gbj_A | 297 | Crystal Structure Of Nad-Binding 6-Phosphogluconate | 4e-10 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 2e-08 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 2e-08 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 4e-08 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 7e-07 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-06 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-06 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 3e-06 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 3e-06 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 3e-06 |
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 423 bits (1089), Expect = e-149
Identities = 98/306 (32%), Positives = 161/306 (52%), Gaps = 2/306 (0%)
Query: 34 RSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93
++ + T P +I ++GTG MG M L AGY + V+NRT ++A L +GA
Sbjct: 16 ENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGA 75
Query: 94 HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASE 153
+ + + A +D+V S++ + V+ VL + G + ++PG + +DM + P A +
Sbjct: 76 TIHEQARAAARDADIVVSMLENGAVVQDVLF--AQGVAAAMKPGSLFLDMASITPREARD 133
Query: 154 LSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSG 213
+A + + +D PVSGG GA+ GTL I AGG + ++ PL + G+ ++G G
Sbjct: 134 HAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHVGPHG 193
Query: 214 KGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILK 273
GQ KLANQ+ + T+ + E +++A K G ++ AI+ G A S+ L LHG R+++
Sbjct: 194 SGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVE 253
Query: 274 RDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333
RDF P ++ +KD+ L Q +G P L +QLY HG +L L + L
Sbjct: 254 RDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVEL 313
Query: 334 ERLNNV 339
N +
Sbjct: 314 ASRNGM 319
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 409 bits (1055), Expect = e-145
Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 3/295 (1%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
++G+IG G+MG M +L AG+ + V A LL +GA ++ + +D
Sbjct: 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFAD 60
Query: 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167
++F +V V VL G G IVDM++ P + + +D
Sbjct: 61 IIFIMVPDTPQVEDVLFGEH-GCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLD 119
Query: 168 APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITI 226
APVSGG+ GA+ GTL+I GG++ V ++ PLF ++GK + +GG+G GQ K+ANQI +
Sbjct: 120 APVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIV 179
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286
A + + E +V+A KAG + A+ G A S+ L++HG R++ R FEPGF +
Sbjct: 180 ALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQ 239
Query: 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
KDL + L+ + + L LP A Q+L+ + A+G L A++ ALE + N +L
Sbjct: 240 KDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMANHKL 294
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-143
Identities = 95/319 (29%), Positives = 155/319 (48%), Gaps = 8/319 (2%)
Query: 17 HSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVT 76
H + S L T L +SM ++ PT+ +IG++G G+MG + ++LL G+TVT
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGSIT------PTDKKIGFLGLGLMGSGIVSNLLKMGHTVT 57
Query: 77 VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRP 136
V+NRT K + GA L +P + S D+ F+ V P + ++L PS G L G+RP
Sbjct: 58 VWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPS-GVLQGIRP 116
Query: 137 GGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKL 196
G VDM+T + +EL+ S+ ++APVSG + + G L I A GD + +
Sbjct: 117 GKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDC 176
Query: 197 NPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255
+ F MGK ++G G L + + M + EG+ A G + + L+ ++
Sbjct: 177 SSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN 236
Query: 256 TGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLS 315
G S LD IL+ +F+P F++ + KDL + + + P A A ++Y
Sbjct: 237 QGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 296
Query: 316 LKAHGEGNLGTQALILALE 334
KA + + A+ A
Sbjct: 297 AKALDQSDNDMSAVYRAYI 315
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 406 bits (1047), Expect = e-143
Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 2/294 (0%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDV 108
++G+IG G+MG+ M +LL AGY++ V +R ++ GA A + ++A Q DV
Sbjct: 5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDV 64
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168
+ +++ V+ V L + G + G +PG +++DM++ P + E+S A +K +DA
Sbjct: 65 IITMLPNSPHVKEVALGEN-GIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA 123
Query: 169 PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIA 227
PVSGG+ A GTL++ GGD+++ K L M V + G G G KLANQ+ +A
Sbjct: 124 PVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVA 183
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287
+ + E + A KAG+N +L AI G AGS LD ++ R+F+PGF ++ +K
Sbjct: 184 LNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIK 243
Query: 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
DL L +G LP A ++ +L+A G GN AL E+L V +
Sbjct: 244 DLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEV 297
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-143
Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 2/306 (0%)
Query: 33 RRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG 92
+ P +G++G G+MG++M +LL G+ VTV+NRTLSK L++ G
Sbjct: 5 HHHHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG 64
Query: 93 AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLAS 152
A + +SP + + +++ P V+ G L + G +DM+T + +
Sbjct: 65 ASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKG-GVLEQICEGKGYIDMSTVDAETSL 123
Query: 153 ELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGG 211
+++ A + K ++ PVSG + A+ G L I A GD+++ ++ P F ++GK Y+G
Sbjct: 124 KINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQ 183
Query: 212 SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRI 271
G G KL + + + M EG+V A K+GL+ + L+ + GA + G +
Sbjct: 184 VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSM 243
Query: 272 LKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALIL 331
K + P F + H KD+ + L +++P A A + + ++ G G+L A+I
Sbjct: 244 NKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIE 303
Query: 332 ALERLN 337
A++
Sbjct: 304 AVKFSR 309
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-140
Identities = 93/286 (32%), Positives = 144/286 (50%), Gaps = 2/286 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+ G+IG G+MG +M +L+ AG +VT++NR+ KA+ L +GA A +P + V F
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTF 62
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ P+ V G L G+ G VDM+T +P+ + + A +K ++APV
Sbjct: 63 AMLADPAAAEEVCFGKH-GVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPV 121
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SG + A+ GTL I A GD ++ + P F MGK + ++G GKG KL + +
Sbjct: 122 SGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGM 181
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
M EG+ KAGL + L+ I GA + L G I R+F P F + H KDL
Sbjct: 182 MACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL 241
Query: 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335
+ + +G L A A +L+ +A G G+ A+ ER
Sbjct: 242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-138
Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 2/286 (0%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
T G++G G+MG M A+L+ AG+ VTV+NR +K PL+ +GA A SP + + D+
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDIT 61
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
+++ P+ R V + G L G+ G +DM+T + ++ + AA +++ ++AP
Sbjct: 62 IAMLADPAAAREVCFGAN-GVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAP 120
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228
VSG + A+ GTL I A GD+S+ P FA +GK ++G G+G KL + +
Sbjct: 121 VSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQ 180
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
M L EGM GL+ L + GA + G +L +F F + H KD
Sbjct: 181 MMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKD 240
Query: 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334
L + ++ +G L G A A + + +A G + A+ LE
Sbjct: 241 LRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 336 bits (864), Expect = e-115
Identities = 92/296 (31%), Positives = 156/296 (52%), Gaps = 3/296 (1%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
+ +IG+IG G MG+ M +LL G TV F+ + ++ GA ++ +A+ SD
Sbjct: 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASD 62
Query: 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167
++F+ + V V+ P G LS + G +IVDM++ PS +++ A+ K +D
Sbjct: 63 IIFTSLPNAGIVETVMNGP-GGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD 121
Query: 168 APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITI 226
APVSGG +GA+ GTL I G E+V +K+ P+ +++GK + ++G +G G K+ N + +
Sbjct: 122 APVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLL 181
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSR-ILKRDFEPGFFVNHF 285
M L E +V K GL E I + S +++ + I+ DF GF ++
Sbjct: 182 GCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQ 241
Query: 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
KDLG+ L+ + + LP A+A Q++ +A G G A+I E++ V +
Sbjct: 242 HKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSV 297
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 326 bits (837), Expect = e-111
Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 4/295 (1%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA-HLADSPHSLASQ 105
T+ +G +G G MG L AG + + LL GA A S A
Sbjct: 5 GTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGV 64
Query: 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165
D + +V + VR VL G ++PG ++ +T + A E++AA ++ N +
Sbjct: 65 VDALVILVVNAAQVRQVLFGED-GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNM 123
Query: 166 IDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS-GKGQFAKLANQ 223
+DAPVSGG A G + + A G E+ +L P+ + V + + G G K+ +Q
Sbjct: 124 LDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQ 183
Query: 224 ITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283
+ + E M A +AG+ +++ + ++ A S + ++ D+ P V+
Sbjct: 184 LLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVD 243
Query: 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338
FVKDLG+ + + LP + A ++ S G G A+I +
Sbjct: 244 IFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEGH 298
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-105
Identities = 86/293 (29%), Positives = 129/293 (44%), Gaps = 7/293 (2%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
++ +IG G MG M HL V+NRT KA + A P +++ V+
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEA-VPLERVAEARVI 59
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
F+ + +V V LR G VD T+ EP + L+ K + +DAP
Sbjct: 60 FTCLPTTREVYEVA----EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP 115
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATT 229
VSGG GA+ GTL + GG E V+++ P A KV ++G G G K N +A
Sbjct: 116 VSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVN 175
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD-LHGSRILKRDFEPGFFVNHFVKD 288
+ EG++ K G++ E L I+ + S + + L R+L R F F + VKD
Sbjct: 176 LWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKD 235
Query: 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341
LGI + P L LA+++Y K + + LER V +
Sbjct: 236 LGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 288
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = e-104
Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 9/292 (3%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+G+IG G MG M +L+ GY + +++ + D G + SP +A ++D +
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRII 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ + + G L ++ G +++D +T +P+++ EL+ +DAPV
Sbjct: 62 TMLPTSINAIEAYSGAN-GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SGG A++G L GG E L MG V Y G G GQ AK+ N + +A +
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDL-------HGSRILKRDFEPGFFV 282
M+G E M + GL+ +L ++ + S D +++ GF
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240
Query: 283 NHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334
KDLG+ + + +LA Q+Y + A G ++ L
Sbjct: 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLR 292
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 7e-95
Identities = 55/292 (18%), Positives = 95/292 (32%), Gaps = 8/292 (2%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
+ IG G MG M LL G V ++NR+ KA L+ GAHL +S + S S
Sbjct: 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASP 67
Query: 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167
++ VL P ++ IVD TT+ L + +
Sbjct: 68 ATIFVLLDNHATHEVLGMP---GVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVK 124
Query: 168 APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITI 226
+ R GD ++ L + ++ FA + +
Sbjct: 125 GMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAH-A 183
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAI--STGAAGSKSLDLHGSRILKRDFE-PGFFVN 283
MV E + + GL V + ++ + +L+ R+ +DF+ ++
Sbjct: 184 FAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLD 243
Query: 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335
+ G+ P Q+ A G G+ A + R
Sbjct: 244 VHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAR 295
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 3e-93
Identities = 76/301 (25%), Positives = 119/301 (39%), Gaps = 17/301 (5%)
Query: 35 SMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH 94
SM T A+ ++G+IG G MG M + VTV++ + PL + GA
Sbjct: 4 SMTTNAAHTT---EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGAT 60
Query: 95 LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASEL 154
LADS +A +D++ V + VR V+ +PG +I +T + A EL
Sbjct: 61 LADSVADVA-AADLIHITVLDDAQVREVVG----ELAGHAKPGTVIAIHSTISDTTAVEL 115
Query: 155 SAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSG 213
+ +++ +DAPVSGG A G LA G D V +++ P F V + G G
Sbjct: 116 ARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPG 175
Query: 214 KGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILK 273
G KLA + T+ E M A AGL+++ + A + R
Sbjct: 176 AGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNM 235
Query: 274 -------RDFEPGFF-VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLG 325
++P KDL + L + + + LP LA + +
Sbjct: 236 KDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
Query: 326 T 326
Sbjct: 296 A 296
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 178 bits (452), Expect = 1e-53
Identities = 45/299 (15%), Positives = 93/299 (31%), Gaps = 18/299 (6%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKA--QPLLDIGAHLADSPHSLASQS 106
++G+IG G ++ + L AG + ++ +++ ++G S +A +
Sbjct: 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGEC 84
Query: 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA- 165
DV+FS+V + + A L G + D T+ P++ + S SA
Sbjct: 85 DVIFSLVTAQAALEVA-----QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ 139
Query: 166 -IDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG-SGKGQFAKLANQ 223
V + + G Q ++ + G G K+
Sbjct: 140 YAAVAVMSAVKPHGHRVPLVVDGDGARRFQAA--FTLYGCRIEVLDGEVGGAALLKMCRS 197
Query: 224 ITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283
+ +E + A K GL + L ++ L +++R+ E
Sbjct: 198 AVLKGLEALFLEALAAAEKMGLADRV-LASLDASFPEH-HLRDLALYLVERNLEHAD--- 252
Query: 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLD 342
+LG ++G+ + + + A R D
Sbjct: 253 RRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAWLRSLANAED 311
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 8e-40
Identities = 47/282 (16%), Positives = 95/282 (33%), Gaps = 22/282 (7%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHLAD------SPHSL 102
T I +IG G +S+ L + ++ + + A A+ +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162
+ +DVV S+V + + V + A L + +D+ + P + + A ++
Sbjct: 85 IACADVVLSLV-VGAATKAVA----ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGK 139
Query: 163 CSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS-GKGQFAKL 220
S ++ V + AG V +G + +G + G+ K+
Sbjct: 140 GSFVEGAVMARVPPYAEKVPILVAGRRAVEVA---ERLNALGMNLEAVGETPGQASSLKM 196
Query: 221 ANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF 280
+ I L+E + A +AG+ + + T L R FE G
Sbjct: 197 IRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGL--DWRDVADYYLSRTFEHGA 254
Query: 281 FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEG 322
V ++ + ++ GL P A + + A +
Sbjct: 255 R---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKD 293
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 2e-34
Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 12/211 (5%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
R+G+IG G + +++ + L + G V S + + ++ VV
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
S V V + +G GI VD+ P S+ +DA +
Sbjct: 62 SAV--TPGV-----ALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGF--VDAAI 112
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTM 230
G R I +G D KLN + G K+
Sbjct: 113 MGSVRRKGADIRIIASGRDAEEFMKLNRY--GLNIEVRGREPGDASAIKMLRSSYTKGVS 170
Query: 231 VGLVEGMVYAHKAGLNVELFLNAISTGAAGS 261
L E + AH+ GL ++ +
Sbjct: 171 ALLWETLTAAHRLGLEEDVL-EMLEYTEGND 200
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 86.0 bits (212), Expect = 2e-19
Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 9/223 (4%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTLSKAQPLLD-IGAHLADSPHSLASQS 106
+T I IG G + ++ L G+ + V++RT A+ L + A + +
Sbjct: 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYA 69
Query: 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166
+ + S +L G + G R ++V S P
Sbjct: 70 KLYI-VSLKDSAFAELL----QGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYP 122
Query: 167 DAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITI 226
S L + + + Y S + + LA T
Sbjct: 123 MQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTC 182
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS 269
T K L ++ L I A L+ +
Sbjct: 183 NFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTA 225
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 1e-18
Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 19/186 (10%)
Query: 30 LLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89
L+ + + +S V ++G +G+G RS+ L+ +G+ V V +R + L
Sbjct: 9 LISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF 68
Query: 90 DIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149
A S +V+F V + S +LS G I+VD++
Sbjct: 69 PSAAQ-VTFQEEAVSSPEVIFVAVFREH-------YSSLCSLSDQLAGKILVDVSNPTEQ 120
Query: 150 LASELSAAASSKNCSAI-DAPVSGG---------DRGAKTGTLAIF-AGGDESVVQKLNP 198
+ + + S V G + G + G + ++
Sbjct: 121 EHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSE 180
Query: 199 LFALMG 204
+ MG
Sbjct: 181 MALAMG 186
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 22/186 (11%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS--DVV 109
+G +G GVMG ++ ++ G+ V VFNRT SK++ + A + + A ++
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 110 FSIVGYPSDVRHVLLHPSSGA--------LSGLRPGGIIVDMTTSEPSLASELSAAASSK 161
S+ P ++L + A G I+VD + + +
Sbjct: 64 ASLKK-PRKA--LILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAA 120
Query: 162 NCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF------ALMGK--VNYMGGSG 213
+ +SGG+ GA+ G A F GG SV +++ P+ A G+ V G G
Sbjct: 121 GLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGG 179
Query: 214 KGQFAK 219
G K
Sbjct: 180 AGSCVK 185
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 8e-15
Identities = 39/276 (14%), Positives = 84/276 (30%), Gaps = 29/276 (10%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+ ++GTG + R L + + +R++ +A+ L ++ A + + VVF
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
++ ++ V H + ++V + S + S A +
Sbjct: 64 -VIVPDRYIKTVANHLN-------LGDAVLVHCSGFLSSEIFKKSGRA----SIHPNFSF 111
Query: 171 SGGDRGAKTGTLAIFA-GGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATT 229
S ++ + +F GDE + + + + ++ S K + LA I
Sbjct: 112 SSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFP 171
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRIL----KRDFEPGFFVNHF 285
+ GL+ L + L KR
Sbjct: 172 VALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKKMRVECSLTGPVKR----------- 220
Query: 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGE 321
D + +E + L ++ L+ E
Sbjct: 221 -GDWQVVEEERREYEKIFGNTVLYDEIVKLLREVAE 255
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 40/198 (20%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+IG IG G MG M L G+ V++ ++ Q L G A S ++
Sbjct: 24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAK----- 78
Query: 111 SIVGYPSDVRHVLLHPSSGA--------LSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162
+ P R V L + L I++D S + ++
Sbjct: 79 --LVKP---RVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQG 133
Query: 163 CSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN-------------- 207
+ +D SGG G + G + GG++ V++L+P+F L +
Sbjct: 134 ITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGT 192
Query: 208 ------YMGGSGKGQFAK 219
+ G SG G F K
Sbjct: 193 AELGYLHCGPSGAGHFVK 210
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
+ +IG +G VMGR++ ++ + GYTV++FNR+ K + ++ P+ + +
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYY--TVKE 71
Query: 108 VVFSIVGYPSDVRHVLLHPSSGA---------LSGLRPGGIIVDMTTSEPSLASELSAAA 158
V S+ P R +LL +GA L G II+D + +
Sbjct: 72 FVESLET-P---RRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNREL 127
Query: 159 SSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF------ALMGK--VNYMG 210
S++ + I VSGG+ GA G +I GG + + + P+ A G+ V Y+G
Sbjct: 128 SAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG 186
Query: 211 GSGKGQFAK 219
G G + K
Sbjct: 187 ADGAGHYVK 195
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
G +G VMG+++ ++ + GYTV ++NRT SK + + + +
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTK--TLEE 61
Query: 108 VVFSIVGYPSDVRHVLLHPSSGA---------LSGLRPGGIIVDMTTSEPSLASELSAAA 158
V S+ P R ++L +GA L L G I++D + +A
Sbjct: 62 FVGSLEK-P---RRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAEL 117
Query: 159 SSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM-------GK--VNYM 209
+ + I VSGG++GA G ++ GG + + P+F + GK V YM
Sbjct: 118 ADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYM 176
Query: 210 GGSGKGQFAK 219
G +G G + K
Sbjct: 177 GANGAGHYVK 186
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 22/184 (11%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
G IG VMG+++ + + G+TV +NRT SK L A S S D +
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK-GKSIIGATSIEDFISK 71
Query: 112 IVGYPSDVRHVLLHPSSGA---------LSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162
+ P R V+L +GA + L G II+D S ++ K
Sbjct: 72 LKR-P---RKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKG 127
Query: 163 CSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN------YMGGSGKG 215
+ + VSGG+ GA+ G ++ GG E + +F ++ K + ++G +G G
Sbjct: 128 ILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAG 186
Query: 216 QFAK 219
+ K
Sbjct: 187 HYVK 190
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 27/189 (14%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS--D 107
I IG VMG+++ ++ + G+ V FNRT+SK L A+ A L + S +
Sbjct: 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL---ANEAKGTKVLGAHSLEE 59
Query: 108 VVFSIVGYPSDVRHVLLHPSSGA---------LSGLRPGGIIVDMTTSEPSLASELSAAA 158
+V + P R ++L +G + L G II+D SE
Sbjct: 60 MVSKLKK-P---RRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDL 115
Query: 159 SSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF------ALMGK--VNYMG 210
K + + VSGG+ GA+ G ++ GG++ + +F G+ +++G
Sbjct: 116 KDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVG 174
Query: 211 GSGKGQFAK 219
G G F K
Sbjct: 175 DDGAGHFVK 183
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-10
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 24/181 (13%)
Query: 38 TVASTDPVC----PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93
T A P+ + GTG G+S+ +L GY+V +R + LL GA
Sbjct: 4 TCADEFPLTVDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSS-LLPRGA 62
Query: 94 HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASE 153
AS+SDV+ V + L+ G +++D++ ++
Sbjct: 63 E-VLCYSEAASRSDVIVLAVHREH-------YDFLAELADSLKGRVLIDVSNNQKMNQYP 114
Query: 154 LSAAASSKNCSAIDAPVSGG---------DRGAKTGTLAIF-AGGDESVVQKLNPLFALM 203
S A A V G + +F G D ++ + +
Sbjct: 115 ESNAE-YLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTL 173
Query: 204 G 204
G
Sbjct: 174 G 174
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 2e-09
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 55 IGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL---LDIGAHLADSPHSLASQSDVVFS 111
+G G++ + + Y VTV R + + + L + SL +DV+ +
Sbjct: 27 VGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIIT 86
Query: 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVD 142
++ S L PG + +D
Sbjct: 87 ATSSK----TPIVEERS-----LMPGKLFID 108
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 4e-08
Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 23/207 (11%)
Query: 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS 106
+ +G G MG + + ++ + + L +G L D + ++
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWID-EA 68
Query: 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166
DVV + P ++ + + +RPG I++ + + P A +
Sbjct: 69 DVVVLAL--PDNIIEKVAE---DIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHP 123
Query: 167 DAPVSGGDRG------------AKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSG 213
P D AK + G E + M V
Sbjct: 124 CHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVT 183
Query: 214 KGQFAKL---ANQITIATTMVGLVEGM 237
Q A L +++ + +V +
Sbjct: 184 TEQLAILEPGLSEMVAMPFVETMVHAV 210
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-07
Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 8/163 (4%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
I G G MG+++ + AG+ VT + +G + + + + +
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGS----KDQATTLGEIVIMAVP-YPALAALAK 75
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ ++ ++ +++ L +L + K + A
Sbjct: 76 QYATQLKG--KIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAAT 133
Query: 171 SGGDRGAKTGTLAIF-AGGDESVVQKLNPLFALMGKVNYMGGS 212
+ + AG D+S Q+ A G
Sbjct: 134 LQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGK 176
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQS 106
+IG IG G M ++ L + + + +L +++ + + + A S L Q
Sbjct: 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61
Query: 107 DVVF 110
D+V
Sbjct: 62 DLVI 65
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-06
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYT----VTVFNRTLSKAQPLLD-IGAHLADSPHSLA 103
+ +IG+IG G MG +M ++N + + + + + G + +A
Sbjct: 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVA 61
Query: 104 SQSDVVF 110
+D++
Sbjct: 62 KNADILI 68
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 3e-06
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------IGAHLADSPH--S 101
+ +G+G + R L ++G VTV RTL A+ L I + D +
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA 64
Query: 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161
++ D+V S++ Y H + + +R +V + P++ EL AA
Sbjct: 65 EVAKHDLVISLIPYT-------FHATVIKSA-IRQKKHVVTTSYVSPAMM-ELDQAAKDA 115
Query: 162 NCSAI 166
+ +
Sbjct: 116 GITVM 120
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-06
Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 29/168 (17%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSL-------- 102
+I +GTG +GR+M L + G+ VT+ R + A A
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80
Query: 103 ------ASQSDVVFSIVGYPSDVRHVLLHPSSGALSG-----------LRPGGIIVDMTT 145
+ + + L + L+G G
Sbjct: 81 LAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPV 140
Query: 146 SEPSLASELSAAASSKNC----SAIDAPVSGGDRGAKTGTLAIFAGGD 189
+ SL ++ + ++A + A G ++F G+
Sbjct: 141 NTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGN 188
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-06
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYT---VTVFNRTLSKAQPLLD-IGAHLADSPHSLA 103
+ I +IG G M R++ L+ GY + V NR+L K + G H A
Sbjct: 2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGA 61
Query: 104 SQSDVVF 110
+DVV
Sbjct: 62 LNADVVV 68
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 35 SMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYT----VTVFNRTLSKAQPLL- 89
S T+ + + +G+IG G + ++ AG + + + A
Sbjct: 8 SSGVDLGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSAL 67
Query: 90 -DIGAHLADSPHSLASQSDVVF 110
+G L SDV+F
Sbjct: 68 RKMGVKLTPHNKETVQHSDVLF 89
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Length = 404 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 55 IGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLD-IGAH---LADSPHSLASQSDVV 109
+G G MG+++ L++ G V V NRT +A L +G + LA +SDVV
Sbjct: 173 VGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA-RSDVV 231
Query: 110 FS 111
S
Sbjct: 232 VS 233
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 21/123 (17%)
Query: 55 IGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGA---HLADSPHSLASQSDVVF 110
IG G G+++ G V + NRT +A L IG L D + V+
Sbjct: 370 IGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLA 429
Query: 111 S--IVGYPSDVRHVLLHPSSGA----LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
+ +G + P+ L+ ++ D + P + L A
Sbjct: 430 NTTSMG---------MQPNVEETPISKDALKHYALVFDAVYT-P-RITRLLREAEESGAI 478
Query: 165 AID 167
+
Sbjct: 479 TVS 481
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 24/117 (20%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD----IGAHLADSPHSLASQSDVVFS 111
TG G + N G+ VT R K + + D S S +VV
Sbjct: 8 ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVD 67
Query: 112 IVGYPSD--------------------VRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148
G D +L+ + +L G +++
Sbjct: 68 AYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLRE 124
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 4e-05
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DSPHSLASQSDV 108
+ +G G +G S+ G V V R + ++G DV
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV 216
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA 156
+ + P+ V+ ++ L+ + ++D+ S+P A
Sbjct: 217 CINTI--PA---LVV---TANVLAEMPSHTFVIDL-ASKPGGTDFRYA 255
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 8e-05
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL----DIGAHLA----DSPHSLAS--- 104
GTG +G M L G+ VF R S LL +GA + D L
Sbjct: 19 GTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK 78
Query: 105 QSDVVFSIVGYPSDVRHVLL 124
+ DVV S + +P + +
Sbjct: 79 KVDVVISALAFPQILDQFKI 98
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 20/128 (15%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
+G IG G +G+ + L G+ + + + + + I L DV
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREM-------DVA 54
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT---SEPSLASELSAAASSKNCSAI 166
+ + A L+ G ++ ++T ++ S +
Sbjct: 55 VEAASQQAVKDY--------AEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVY 106
Query: 167 DAP-VSGG 173
A GG
Sbjct: 107 IASGAIGG 114
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP--------LLDIGAHLA----DSPHSLA 103
GTG +G+ + ++ G+ V R + +GA L D L
Sbjct: 12 GTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLV 71
Query: 104 S---QSDVVFSIVGYPSDVRHVLLH 125
Q DVV S + H+L
Sbjct: 72 DALKQVDVVISALAGGVLSHHILEQ 96
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 20/126 (15%)
Query: 51 RIGWIGTGVMGRSMCAHLL--NAGYTVTVFNRTLSKAQPLLD------IGAHLADSPH-- 100
+ +G+G + + + L N VTV RTL+ AQ L I + D
Sbjct: 25 NVLLLGSGFVAQPV-IDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALD 83
Query: 101 SLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160
+ + +DVV S++ Y HP+ S +R +V + P+L EL
Sbjct: 84 KVLADNDVVISLIPYT-------FHPNV-VKSAIRTKTDVVTSSYISPALR-ELEPEIVK 134
Query: 161 KNCSAI 166
+ +
Sbjct: 135 AGITVM 140
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 55 IGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPHSLASQSDVV 109
+G G R++ L+ G V ++NRT KA L + +SP + + V+
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVI 190
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 2e-04
Identities = 35/207 (16%), Positives = 60/207 (28%), Gaps = 44/207 (21%)
Query: 51 RIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLADSPHSLASQSDV 108
R+ +G TG +G+ + L G+ + V +R KA+ + D+ + D
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 109 V--FSIVGYPSDVRHV--LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164
I H L +V ++ +A+
Sbjct: 62 AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121
Query: 165 AI--------------------------DAPVSGGDRGAK----------TGTLAIFAGG 188
+ D PV G D +K G + AG
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181
Query: 189 DES--VVQKLNPLFALMGKVNYMGGSG 213
+ +V+ L PL + + N MG G
Sbjct: 182 LSNSRLVESLTPLILNIMRFNGMGELG 208
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYT----VTVFNRTLSKAQPLLDIGAHLADSPHSLA 103
N ++G++G G MG ++ + NA + + + + S LA
Sbjct: 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNT------TLNYMSSNEELA 56
Query: 104 SQSDVVF 110
D++
Sbjct: 57 RHCDIIV 63
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKA---------QPLLDIGAHLA----DSPHSL 102
TG +GR + L+ G+ + R + + + GA++ D SL
Sbjct: 12 ATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASL 71
Query: 103 AS---QSDVVFSIVG 114
DVV S VG
Sbjct: 72 VEAVKNVDVVISTVG 86
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKA---------QPLLDIGAHLA----DSPHSL 102
GTG +G+ M L+ + ++ R L+ + +G + + +
Sbjct: 12 GTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKM 71
Query: 103 AS---QSDVVFSIVGYPSDVRHVLL 124
S Q D+V S + +P + +
Sbjct: 72 VSVLKQVDIVISALPFPMISSQIHI 96
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.98 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.98 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.97 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.97 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.97 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.96 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.96 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.95 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.95 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.95 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.95 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.95 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.94 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.94 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.93 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.92 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.92 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.92 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.92 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.91 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.91 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.91 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.91 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.91 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.91 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.9 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.9 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.9 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.89 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.88 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.88 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.88 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.87 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.87 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.87 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.86 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.85 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.84 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.84 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.84 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.84 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.83 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.81 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.8 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.79 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.77 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.77 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.77 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.77 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.76 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.75 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.75 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.74 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.74 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.73 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.73 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.72 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.54 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.65 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.64 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.63 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.62 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.57 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.57 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.56 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.49 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.41 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.36 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.35 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.34 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.32 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.32 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.3 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.3 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.28 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.28 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.28 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.28 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.27 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.26 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.26 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.26 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.25 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.25 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.25 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.23 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.23 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.23 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.23 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.22 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.21 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.2 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.2 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.2 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.2 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.2 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.18 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.17 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.15 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 99.15 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.13 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.13 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.11 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.07 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.06 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.04 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 99.02 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.01 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.99 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.94 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.94 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.92 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.91 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.9 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.9 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.9 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.89 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.88 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.88 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.87 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.87 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.87 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.86 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.86 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.84 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.81 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.81 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.8 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.8 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.8 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 98.79 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.79 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.79 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.79 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.79 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.78 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.78 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.77 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.77 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.76 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 98.75 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.75 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.74 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.74 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.73 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.72 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.72 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.72 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.72 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.71 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.71 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.7 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.7 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.7 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.7 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.69 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.69 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.67 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.66 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.65 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.65 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 98.63 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.63 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.62 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.59 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.59 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.59 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.57 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.56 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 98.56 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.55 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.54 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.51 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.51 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.51 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.5 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.5 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.49 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.49 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.49 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.48 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.47 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.47 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.47 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.46 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.46 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.44 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.42 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.42 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.41 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.41 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.41 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.41 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.39 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.39 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.39 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.38 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.38 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.38 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.38 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.37 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.36 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.35 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.35 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.35 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.35 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.35 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.35 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.33 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.32 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.32 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.32 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.31 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.31 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.3 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.29 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.29 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.26 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.25 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.25 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.25 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.25 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.24 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.24 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.22 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.22 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.21 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.2 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.2 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.16 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.15 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.15 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.15 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.15 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.13 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.13 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.11 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.11 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.1 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.1 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.1 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.1 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.09 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.09 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.09 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.08 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.08 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.07 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 98.07 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.03 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.98 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.94 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.93 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.93 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.92 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.91 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.9 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.9 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.87 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.83 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.83 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.81 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.8 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.8 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.8 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.79 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.78 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.75 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.72 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.69 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.69 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.68 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.67 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.67 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.67 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.65 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.65 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.63 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.62 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.61 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.61 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.6 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.58 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.55 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.54 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.52 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.49 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.49 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.49 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.48 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.47 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.43 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.43 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.42 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.42 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 97.4 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.4 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.37 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.37 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.35 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.35 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.35 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.34 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.3 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.26 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.26 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.26 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.23 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.21 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.19 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.18 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.15 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.15 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 97.13 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.12 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 97.1 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.1 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.1 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.1 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.09 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.07 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.06 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.06 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.05 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.04 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.02 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.98 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.98 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.95 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.94 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 96.93 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.91 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.9 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.89 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.89 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.89 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.88 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.88 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.88 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.87 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.84 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.83 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.81 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.8 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 96.79 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.77 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.77 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 96.76 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.74 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.72 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.71 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.65 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.58 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.58 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.56 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.54 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.54 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.52 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.52 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.52 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.52 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.5 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.49 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.48 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.46 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 96.44 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.44 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.39 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.38 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.37 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.36 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.35 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.35 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.32 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.3 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 96.3 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.3 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.29 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.29 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.28 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.28 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.26 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.21 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.2 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.19 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.19 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.18 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 96.17 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.17 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.16 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.16 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.15 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.12 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.08 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 96.08 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 96.07 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.05 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.05 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.02 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.01 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.01 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 96.01 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.97 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 95.97 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.97 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.97 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 95.93 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 95.92 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.92 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.91 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.9 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 95.9 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.9 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.88 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.88 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.87 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 95.87 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.86 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.86 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.86 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.85 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.82 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.82 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.81 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.8 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.8 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.79 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 95.79 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 95.77 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.76 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 95.75 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.74 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.74 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 95.73 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.7 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.68 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.66 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.65 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.65 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.63 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 95.63 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.6 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.58 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.56 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.56 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 95.55 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 95.54 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.53 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.52 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.51 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.5 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 95.49 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 95.49 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 95.49 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.47 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 95.46 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.45 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.44 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.43 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.42 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.4 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.39 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 95.39 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 95.38 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 95.37 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.35 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.34 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.32 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 95.32 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.29 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.28 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 95.27 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 95.25 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.25 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 95.24 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-51 Score=374.23 Aligned_cols=290 Identities=31% Similarity=0.503 Sum_probs=275.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.|+||||||+|.||..||++|.++||+|++|||++++.+.+.+.|...++++.|+++++|+||+|+|.+.++++++.+..
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~ 81 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 81 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSS
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
.+.+.+.++++|||+||+.|..++++.+.+.++|+.|+|+|++|++..+..|++++++||+++.+++++++|+.+|. +
T Consensus 82 -g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 160 (300)
T 3obb_A 82 -GLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 160 (300)
T ss_dssp -SSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred -hhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCE
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-------hcccCCCCCc
Q 018694 207 NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-------RILKRDFEPG 279 (351)
Q Consensus 207 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~ 279 (351)
+|+|+.|.+...|+++|.+...++.+++|++.++++.|++++.+.+++..+...++.++.+.| .+..++|.++
T Consensus 161 ~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (300)
T 3obb_A 161 FHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGG 240 (300)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSS
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999887765 3566789999
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 280 FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 280 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
|+++.+.||++++.+++++.|+++|+.+.+.++++++.++|+++.|++++++.|++..|
T Consensus 241 f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~G 299 (300)
T 3obb_A 241 FMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQG 299 (300)
T ss_dssp SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC-
T ss_pred chHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998776
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=365.40 Aligned_cols=289 Identities=22% Similarity=0.371 Sum_probs=269.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
..||||||+|.||..||.+|.++||+|++|||++++.+.+.+.|...++++.|+++++|+||+|+|++.++++++..
T Consensus 5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~--- 81 (297)
T 4gbj_A 5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSM--- 81 (297)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCH---
T ss_pred CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHH---
Confidence 35899999999999999999999999999999999999999999999999999999999999999988888887752
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
.+.+.+.+++++||++|+.|.+++++.+.+.++|+.|+++|++|++..+..+++.++++|+++.+++++++|+.++. ++
T Consensus 82 ~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~ 161 (297)
T 4gbj_A 82 ELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVF 161 (297)
T ss_dssp HHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEE
T ss_pred HHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeE
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred EcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCC-ccchhhH
Q 018694 208 YMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEP-GFFVNHF 285 (351)
Q Consensus 208 ~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~ 285 (351)
++++ .|.+...|+++|.+...++.+++|++.++++.|++++.+++++..+...++.++.+.+++.+++|.| +|+++.+
T Consensus 162 ~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~ 241 (297)
T 4gbj_A 162 DFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLG 241 (297)
T ss_dssp ECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHH
T ss_pred EecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHH
Confidence 8985 8999999999999999999999999999999999999999999999999999999999999999986 8999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCc
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVR 340 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 340 (351)
.||++++++++++.|+|+|+.+.+.++++++.++|+++.|++++++.+++..|++
T Consensus 242 ~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~aGl~ 296 (297)
T 4gbj_A 242 LKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDDAGLT 296 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999874
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=337.34 Aligned_cols=289 Identities=28% Similarity=0.509 Sum_probs=272.9
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
...||||+|||+|.||..+|..|.++|++|++|||++++.+.+.+.|+...+++++++.++|+||+|+|++.++++++.+
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~ 97 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFD 97 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHS
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhC
Confidence 45679999999999999999999999999999999999999999889999999999999999999999888899999932
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~ 205 (351)
.. ++.+.+.++++||+++++.|.+.+++.+.+.+.++.|+++|+++++.....+++.++++++++.++.++++|+.+|.
T Consensus 98 ~~-~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~ 176 (310)
T 3doj_A 98 KG-GVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGK 176 (310)
T ss_dssp TT-CGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEE
T ss_pred ch-hhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCC
Confidence 22 88888899999999999999999999998888899999999999999888899889999999999999999999998
Q ss_pred -eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhh
Q 018694 206 -VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNH 284 (351)
Q Consensus 206 -~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
++++++.|.+.+.|+++|.+...++.+++|++.++++.|++++++.+++..+...++.+..+.+++.+++|.++|.+++
T Consensus 177 ~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~ 256 (310)
T 3doj_A 177 RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKH 256 (310)
T ss_dssp EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHH
T ss_pred CEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHH
Confidence 8899999999999999999999999999999999999999999999999998888899988899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 018694 285 FVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335 (351)
Q Consensus 285 ~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~ 335 (351)
+.||++.++++++++|+++|+++.++++++.+.+.|+++.|++++++.+++
T Consensus 257 ~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 307 (310)
T 3doj_A 257 QQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKF 307 (310)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999985
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=327.46 Aligned_cols=285 Identities=31% Similarity=0.538 Sum_probs=269.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
||||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+...++++++++++|+||+|+|.+.++++++.+..
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~- 79 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGAN- 79 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTT-
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCch-
Confidence 5799999999999999999999999999999999999999988999999999999999999999987889999993222
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.++++||+++++.+...+++.+.+.+.++.|+++|+++++.....+.+.++++++++..+.++++|+.+|. ++
T Consensus 80 ~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 159 (287)
T 3pdu_A 80 GVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCL 159 (287)
T ss_dssp CGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEE
T ss_pred hhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 88888889999999999999999999998888899999999999998888899899999999999999999999998 88
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k 287 (351)
++++.|.+.+.|+++|.+...++.+++|++.++++.|++++++.+++..+...++.++.+.+++.+++|.++|.++++.|
T Consensus 160 ~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k 239 (287)
T 3pdu_A 160 HLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQK 239 (287)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHH
T ss_pred EcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999988899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 288 d~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
|++.++++++++|+++|+++.++++++++.+.|+++.|++++++.++
T Consensus 240 d~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 240 DLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999875
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=330.28 Aligned_cols=290 Identities=33% Similarity=0.563 Sum_probs=270.3
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
+.+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+...++++++++++|+||+|+|.+.++++++.+.
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 35689999999999999999999999999999999999999998899999999999999999999998788999888622
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.++++||+++++.+...+++.+.+.+.++.|+++|+++++..+..+.+.++++|+++.+++++++|+.+ .
T Consensus 109 --~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~ 185 (320)
T 4dll_A 109 --GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GR 185 (320)
T ss_dssp --CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EE
T ss_pred --hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CC
Confidence 255567899999999999999999999998888999999999999988888998999999999999999999999 7
Q ss_pred eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhH
Q 018694 206 VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHF 285 (351)
Q Consensus 206 ~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
++++++.|.+.+.|+++|.+....+.+++|++.++++.|++++++.+++..+.+.++.++.+.+++.+++|.++|.++++
T Consensus 186 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~ 265 (320)
T 4dll_A 186 ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQ 265 (320)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHH
T ss_pred EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHH
Confidence 88999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCC
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~ 339 (351)
.||++.++++++++|+++|+++.+.++++++.+.|+++.|++++++.+++..|+
T Consensus 266 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 319 (320)
T 4dll_A 266 LKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGM 319 (320)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999987763
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=327.24 Aligned_cols=289 Identities=26% Similarity=0.401 Sum_probs=267.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-ADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
++|||+|||+|.||..++..|+++|++|++|||++++.+.+.+.|... .++++++++++|+||+|+|.+..++.++.+.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~ 85 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE 85 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence 458999999999999999999999999999999999999999888887 8899999999999999998888999998322
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
. ++.+.+.++++||+++++.+.+.+++.+.+.+.++.|+++|+++++.....+.+.++++++++..+.++++|+.+|.
T Consensus 86 ~-~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 164 (303)
T 3g0o_A 86 D-GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN 164 (303)
T ss_dssp C-CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred h-hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCC
Confidence 2 88888899999999999999999999998888899999999999999888899899999999999999999999998
Q ss_pred eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhh
Q 018694 206 VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNH 284 (351)
Q Consensus 206 ~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
++++++ .|.+.+.|+++|.+...++.+++|++.++++.|++++++.+++..+...++.++.+.+.+.+++|.++|.++.
T Consensus 165 ~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 244 (303)
T 3g0o_A 165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDI 244 (303)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHH
Confidence 888998 9999999999999999999999999999999999999999999998888999998899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhc
Q 018694 285 FVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLN 337 (351)
Q Consensus 285 ~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~ 337 (351)
+.||++.++++++++|+++|+++.++++++++.+.|+|+.|++++++.+++..
T Consensus 245 ~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (303)
T 3g0o_A 245 FVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEG 297 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC----
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999887654
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=323.13 Aligned_cols=284 Identities=32% Similarity=0.547 Sum_probs=268.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
|||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|+...+++++++.++|+||+|+|.+.++++++.+.. +
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~-~ 80 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKH-G 80 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT-C
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcc-h
Confidence 799999999999999999999999999999999999999999999999999999999999999977889999993222 8
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
+.+.+.++++||+++++.+.+.+++.+.+.+.++.|+++|+++++.....+.+.++++++++..+.++++|+.+|. +++
T Consensus 81 l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~ 160 (287)
T 3pef_A 81 VLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIH 160 (287)
T ss_dssp HHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEE
T ss_pred HhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEE
Confidence 8888889999999999999999999998888899999999999998888888889999999999999999999998 889
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHH
Q 018694 209 MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288 (351)
Q Consensus 209 ~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 288 (351)
+++.|.+.+.|+++|.+.+.++.+++|++.++++.|++++++.+++..+...++.+..+.+.+.+++|.++|.++++.||
T Consensus 161 ~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 240 (287)
T 3pef_A 161 LGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKD 240 (287)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 289 ~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
+++++++++++|+++|+++.++++++++.+.|+++.|++++++.++
T Consensus 241 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 241 LRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988764
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=306.76 Aligned_cols=294 Identities=34% Similarity=0.595 Sum_probs=265.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+....++++++.++|+||+|+|.+.+++.++....
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~ 83 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN 83 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcc
Confidence 45799999999999999999999999999999999999888888888888999988899999999977889999983211
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
++.+.+.++++||+++++.+.+.+.+.+.+...++.|+++|+++++.....+...++++++++..+.++++|+.+|. +
T Consensus 84 -~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~ 162 (299)
T 1vpd_A 84 -GIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 162 (299)
T ss_dssp -CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEE
T ss_pred -hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCe
Confidence 67777889999999999988878889888887789999999988777666677778888899999999999999998 8
Q ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHH
Q 018694 207 NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286 (351)
Q Consensus 207 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
+++++.+.+.+.|+++|.+...+..++.|++.++++.|++++++.+++..+..+++.+..+.+.+.++++.+|++++.+.
T Consensus 163 ~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~ 242 (299)
T 1vpd_A 163 VHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 242 (299)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHH
Confidence 88889999999999999999999999999999999999999999999998888888777778888888898999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCccc
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLD 342 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 342 (351)
||++.++++++++|+++|+++.++++++++.+.|+++.||+++++.+++..|....
T Consensus 243 kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 298 (299)
T 1vpd_A 243 KDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVT 298 (299)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999998887654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=302.81 Aligned_cols=267 Identities=27% Similarity=0.356 Sum_probs=248.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+|||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|+..+++++++++ +|+||+|+|.+.++++++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~---- 89 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVG---- 89 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHH----
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHH----
Confidence 47999999999999999999999999999999999999999999999999999998 9999999987889999998
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.++++||+++++.+.+.+++.+.+.+.++.|+++|+++++.....+.+.++++++++..++++++|+.++. ++
T Consensus 90 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 169 (296)
T 3qha_A 90 ELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVI 169 (296)
T ss_dssp HHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeE
Confidence 88888999999999999999999999999988899999999999999888899899999999999999999999998 88
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhcCCCCchhhhhhhhhcccCCCCCccc
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELF------LNAISTGAAGSKSLDLHGSRILKRDFEPGFF 281 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 281 (351)
++++.|.+.+.|+++|.+....+.+++|++.++++.|++++++ .+++..+.+.++... .+++.++ |.++|.
T Consensus 170 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~ 246 (296)
T 3qha_A 170 HAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQ 246 (296)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHH
T ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCc
Confidence 9999999999999999999999999999999999999999999 899988876665443 6778887 889999
Q ss_pred h-----hhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC
Q 018694 282 V-----NHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGN 323 (351)
Q Consensus 282 ~-----~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~ 323 (351)
+ +++.||++.++++++++|+++|+++.+++++..+.+.|+++
T Consensus 247 ~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~ 293 (296)
T 3qha_A 247 PFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKE 293 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC--
T ss_pred hhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCccc
Confidence 8 99999999999999999999999999999999999999854
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=299.95 Aligned_cols=294 Identities=31% Similarity=0.543 Sum_probs=266.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+...+++++++.++|+||+|+|++.+++.++....
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~- 82 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPG- 82 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT-
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcc-
Confidence 4799999999999999999999999999999999998888888888888999988899999999999999999985222
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.++++||+++++.+...+.+.+.+...+++|+++|+.+++.....+.+.++++++++..+.++++|+.+|. ++
T Consensus 83 ~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~ 162 (301)
T 3cky_A 83 GVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIY 162 (301)
T ss_dssp CHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEE
Confidence 56677888999999999988888888888877789999999988776666677677788899999999999999998 77
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-hcccCCCCCccchhhHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-RILKRDFEPGFFVNHFV 286 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~ 286 (351)
++++.|.+.+.|+++|.+...+..++.|++.++++.|++++++.+++..+..+++.+..+.+ .+.++++.+|++++.+.
T Consensus 163 ~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 242 (301)
T 3cky_A 163 HVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQH 242 (301)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHH
Confidence 88899999999999999999999999999999999999999999999988888888777777 78888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcccc
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDN 343 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~ 343 (351)
||++.++++++++|+++|+++.++++++++.+.|+++.||+++++.+++..|..+..
T Consensus 243 kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~ 299 (301)
T 3cky_A 243 KDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG 299 (301)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHCCCCSC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988877654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=296.83 Aligned_cols=292 Identities=34% Similarity=0.596 Sum_probs=262.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
+||||+|||+|.||..++..|.+.|++|++|| ++++.+.+.+.|+....++++++.++|+||+|+|++.+++.++...+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~ 80 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEH 80 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCch
Confidence 46899999999999999999999999999999 99999988888888888999999999999999998888999986333
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
++.+.+.++++||+++++.+...+.+.+.+.+.+++|+++|+.+++.....+.+.++++++++..+.++++|+.+|. +
T Consensus 81 -~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~ 159 (295)
T 1yb4_A 81 -GCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNI 159 (295)
T ss_dssp -SSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred -hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCE
Confidence 46667788999999999988888888888877788999999888766666677677888899999999999999998 7
Q ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHH
Q 018694 207 NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286 (351)
Q Consensus 207 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
+++++.+.+.+.|+++|.+...+..++.|++.++++.|++.+++.+.+..+..+++.+..+.+.+.++++.+|++++.+.
T Consensus 160 ~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 239 (295)
T 1yb4_A 160 TLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQ 239 (295)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHH
Confidence 88899999999999999999999999999999999999999999999998887777777677788888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcc
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 341 (351)
||++++++.++++|+++|++++++++++++.+.|+++.|++++++.+++..+..+
T Consensus 240 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 294 (295)
T 1yb4_A 240 KDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMANHKL 294 (295)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999999999998877654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=305.68 Aligned_cols=282 Identities=19% Similarity=0.194 Sum_probs=252.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+...++++++++++|+||+|+|.+.++++++. .+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~ 86 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MP 86 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-ST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-cc
Confidence 45899999999999999999999999999999999999999888998899999999999999999988888998885 11
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
.+ ..+.++++||+++++.+...+++.+.+.+.++.|+++|+++++.....+...++++|+++.+++++++|+.+|. +
T Consensus 87 -~l-~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~ 164 (306)
T 3l6d_A 87 -GV-ARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHT 164 (306)
T ss_dssp -TH-HHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEE
T ss_pred -ch-hhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCE
Confidence 33 33568999999999999999999998888899999999999876666666788899999999999999999966 8
Q ss_pred EEc--CC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC--CCchhhhhhhhhcccCCCCCc-c
Q 018694 207 NYM--GG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA--AGSKSLDLHGSRILKRDFEPG-F 280 (351)
Q Consensus 207 ~~~--g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~-~ 280 (351)
+++ |+ .|.+...| .+....+.+++|++.++++.|++++++.+++..+. +.++.++.+.+++.+++|.++ |
T Consensus 165 ~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 240 (306)
T 3l6d_A 165 VFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQA 240 (306)
T ss_dssp EECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSS
T ss_pred EEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcc
Confidence 899 86 79999988 34456788999999999999999999999998875 567888888999999999975 6
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHh
Q 018694 281 FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERL 336 (351)
Q Consensus 281 ~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~ 336 (351)
+++.+.||++++++.+++.|+++|+.+.+.++++++.+.|+++.|++++++.+++.
T Consensus 241 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~ 296 (306)
T 3l6d_A 241 RLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFARE 296 (306)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC--
T ss_pred cHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhH
Confidence 89999999999999999999999999999999999999999999999999887654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=294.55 Aligned_cols=286 Identities=29% Similarity=0.419 Sum_probs=257.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
||||+|||+|.||..++..|.+ |++|++|||++++.+.+.+.|+...+ +++++.++|+||+|+|.+.++++++.
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~---- 74 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAE---- 74 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHH----
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHH----
Confidence 5799999999999999999999 99999999999988888877777666 77888899999999977777898887
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.++++|++++++.+...+.+.+.+.+.++.|+++|+.+++.....+...++++++++..+.++++| .+|. ++
T Consensus 75 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~ 153 (289)
T 2cvz_A 75 ALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVV 153 (289)
T ss_dssp HHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEE
T ss_pred HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeE
Confidence 787888899999999999888888888888777889999998877776667776777888999999999999 9998 78
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-hcccCCCCCccchhhHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-RILKRDFEPGFFVNHFV 286 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~ 286 (351)
++++.+.+.|.|++.|.+...+..++.|++.++++.|++++++.+++..+..+++++..+.+ .+.++++.+|++++.+.
T Consensus 154 ~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~ 233 (289)
T 2cvz_A 154 HVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLV 233 (289)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHH
T ss_pred EcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHH
Confidence 88999999999999999999999999999999999999999999999988877777776677 78888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcc
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 341 (351)
||++.+++.++++|+++|++++++++++++.+.|+++.||+++++.+++..|.++
T Consensus 234 kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~~ 288 (289)
T 2cvz_A 234 KDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 288 (289)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999998887653
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=292.33 Aligned_cols=285 Identities=30% Similarity=0.513 Sum_probs=256.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+....++++++.++|+||+|+|.+.++++++....
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~- 108 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPS- 108 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTT-
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCch-
Confidence 4899999999999999999999999999999999999888888888888898988899999999966899999988221
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.++++||+++++.+...+++.+.+...+..|+++|+++.+.....+.+.++++++++..+.++++|+.+|. ++
T Consensus 109 ~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~ 188 (316)
T 2uyy_A 109 GVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSF 188 (316)
T ss_dssp CGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEE
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEE
Confidence 23467788999999999988888888888876788999999988877777787778778889999999999999998 77
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k 287 (351)
++++.+.+.|.|++.|.+.+.+..++.|++.++++.|++.+++.+++..+..+++.+....+.+.++++.+|++++.+.|
T Consensus 189 ~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~k 268 (316)
T 2uyy_A 189 FLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQK 268 (316)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHH
Confidence 88889999999999999999999999999999999999999999999988888877777777788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 288 d~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
|+++++++++++|+++|++++++++++++.+.|+++.|++++++.++
T Consensus 269 d~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 269 DLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887653
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=286.92 Aligned_cols=286 Identities=25% Similarity=0.436 Sum_probs=250.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+...+++++++.++|+||+|+|++.++++++.... .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~-~ 79 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN-G 79 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT-S
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCch-h
Confidence 689999999999999999999999999999999999888888888888999988899999999999999999998221 2
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
+.+.+.++++||++++..+...+++.+.+.+.+..|+++|+.+++.....+.+.++.+++++..+.++++|+.+|. +++
T Consensus 80 ~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~ 159 (296)
T 2gf2_A 80 ILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVY 159 (296)
T ss_dssp GGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEE
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4456778999999888888777777777766688899999888776666777788888999999999999999998 778
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-------hcccCCCCCccc
Q 018694 209 MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-------RILKRDFEPGFF 281 (351)
Q Consensus 209 ~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~ 281 (351)
++..|.+.+.|+++|.+......++.|++.++++.|++++++.+++..+.+.++.+....+ .+..+++.+||+
T Consensus 160 ~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~ 239 (296)
T 2gf2_A 160 CGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFG 239 (296)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSB
T ss_pred eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCc
Confidence 8889999999999999988899999999999999999999999999886666666654321 234467888999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHh
Q 018694 282 VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERL 336 (351)
Q Consensus 282 ~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~ 336 (351)
++.+.||++.++++++++|+++|+++.++++++.+.+.|+++.|++++++.+++.
T Consensus 240 ~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 294 (296)
T 2gf2_A 240 TTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988643
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=288.85 Aligned_cols=277 Identities=18% Similarity=0.231 Sum_probs=236.4
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCc-------ccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChh
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTL-------SKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~-------~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~ 117 (351)
+++|||+|||+|.||..+|..|+++| ++|++|||++ +..+.+.+.|+ .+ ++++++.++|+||+|||++.
T Consensus 22 ~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~ 99 (317)
T 4ezb_A 22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAA 99 (317)
T ss_dssp TSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGG
T ss_pred ccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHH
Confidence 46789999999999999999999999 9999999997 44555555677 56 88899999999999995555
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHH
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLN 197 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~ 197 (351)
.. +.+. ++.+.+.++++||+++++.|.+.+++.+.+.+.++.|+++|++++. ....+.+.++++|+++ +.++
T Consensus 100 ~~-~~~~----~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~--~~~~ 171 (317)
T 4ezb_A 100 TK-AVAA----SAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA--VEVA 171 (317)
T ss_dssp HH-HHHH----HHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH--HHHH
T ss_pred HH-HHHH----HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH--HHHH
Confidence 44 4556 7888889999999999999999999999998889999999999854 4456677888998776 8999
Q ss_pred HHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC
Q 018694 198 PLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA-AGSKSLDLHGSRILKR 274 (351)
Q Consensus 198 ~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~ 274 (351)
++|+.+|. ++++++ .|.+.+.|+++|.+....+.+++|++.++++.|++++ +++.+..+. ..++ ..+.+.+.++
T Consensus 172 ~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~--~~~~~~~~~~ 248 (317)
T 4ezb_A 172 ERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDW--RDVADYYLSR 248 (317)
T ss_dssp HHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH--HHHHHHHHHH
T ss_pred HHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccH--HHhhhhhhcC
Confidence 99999998 889998 8999999999999999999999999999999999995 555555443 2233 4567788888
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHH----HHHHHHcCCC-CCChHHHHHHHHHhcCC
Q 018694 275 DFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQL----YLSLKAHGEG-NLGTQALILALERLNNV 339 (351)
Q Consensus 275 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l----~~~~~~~g~~-~~d~~~~~~~~~~~~~~ 339 (351)
+|.++|.+ .||++.++++++++|+++|+++.+.++ ++.+.+.|++ +.||+++++.++.....
T Consensus 249 ~~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (317)
T 4ezb_A 249 TFEHGARR---VTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRLAR 315 (317)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHHC--
T ss_pred CCCCCcch---HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhhccc
Confidence 88888873 899999999999999999999999999 7777788886 99999999998866544
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=284.18 Aligned_cols=264 Identities=17% Similarity=0.242 Sum_probs=232.3
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC--cccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT--LSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~--~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
+.||||+|||+|.||..++..|.++|+ +|++|||+ +++.+.+.+.|+...+++++++.++|+||+|||++.. .+++
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~-~~~~ 100 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAA-LEVA 100 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTH-HHHH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhH-HHHH
Confidence 456899999999999999999999999 99999997 5777888888999999999999999999999955554 4567
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--CCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--NCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
. ++.+.+.++++||+++++.+.+.+++.+.+.+. ++.|+++|++++.... .+.+.++++|+++ +.++++|+
T Consensus 101 ~----~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~~ll~ 173 (312)
T 3qsg_A 101 Q----QAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQAAFT 173 (312)
T ss_dssp H----HHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHHHHHH
T ss_pred H----hhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHHHHHH
Confidence 7 888888899999999999999999999888777 8999999999866554 6677888998777 89999999
Q ss_pred hhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCc
Q 018694 202 LMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 202 ~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 279 (351)
.+|. ++++++ .|.+.+.|+++|.+....+.+++|++.++++.|++. ++.+.+..+. +++.++.+.+.+.+++|.++
T Consensus 174 ~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g 251 (312)
T 3qsg_A 174 LYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEHHLRDLALYLVERNLEHA 251 (312)
T ss_dssp TTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGGTHHHHHHHHHHHHHHHH
T ss_pred HhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-CchhHHHhhhHhhcCCCCcc
Confidence 9999 888998 899999999999999999999999999999999999 5777877765 45666777888899999888
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC
Q 018694 280 FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGN 323 (351)
Q Consensus 280 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~ 323 (351)
|.+ .||++.+++++++.|+++|+++.+.++++++.+.|.++
T Consensus 252 ~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 252 DRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp HHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 876 79999999999999999999999999999999887544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=273.80 Aligned_cols=278 Identities=24% Similarity=0.305 Sum_probs=236.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCC---CEEEEecCChhHHHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS---DVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~---DiIi~~vp~~~~~~~v~~ 124 (351)
.+|||+|||+|.||..+|..|.+.|++|++|||++++.+.+.+.|+..+.++++++.++ |+||+|||.+ .+++++.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl~ 99 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSMLQ 99 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHHH
Confidence 34899999999999999999999999999999999999999988999999999999888 9999999666 9999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG 204 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g 204 (351)
++.+.+.++++|||++++.+...+++.+.+.++++.|+++|++|++..+..|. .++++|+++.++.++++|+.++
T Consensus 100 ----~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 100 ----RMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLA 174 (358)
T ss_dssp ----HHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHS
T ss_pred ----HHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhc
Confidence 89899999999999999999999999999988999999999999999998888 8999999999999999999999
Q ss_pred --------------------c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------------
Q 018694 205 --------------------K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKA-------------------- 243 (351)
Q Consensus 205 --------------------~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~-------------------- 243 (351)
. ++++|+.|++...|+++|.+....+.+++|++.++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~ 254 (358)
T 4e21_A 175 PGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPD 254 (358)
T ss_dssp CCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGG
T ss_pred cccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccch
Confidence 5 89999999999999999999999999999999999998
Q ss_pred ----CCCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCCcc-chhhHHHH---HHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018694 244 ----GLNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEPGF-FVNHFVKD---LGICLKECQNMGLALPGLALAQQLYL 314 (351)
Q Consensus 244 ----Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~a~~~gv~~p~~~~~~~l~~ 314 (351)
|++.+++.+.++.+. ..|++++...+.+.+. |.+ .+....+| .++++..+.+.|+|+|++.+. ++.
T Consensus 255 ~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~---p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l~~ 329 (358)
T 4e21_A 255 FYRYDLDLADITEVWRRGSVISSWLLDLSATALLDS---PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--LYE 329 (358)
T ss_dssp GCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHC---TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--HHH
T ss_pred hcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhC---CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--HHH
Confidence 899999999999886 7899998876654432 211 11222233 368999999999999998754 555
Q ss_pred HHHHcCCCCCChH-HHHHHHHHhcC
Q 018694 315 SLKAHGEGNLGTQ-ALILALERLNN 338 (351)
Q Consensus 315 ~~~~~g~~~~d~~-~~~~~~~~~~~ 338 (351)
+...+ ++..+. .+++..|..+|
T Consensus 330 ~~~s~--~~~~~~~~l~~a~r~~fG 352 (358)
T 4e21_A 330 RFSSR--GEDDFANRLLSAMRYEFG 352 (358)
T ss_dssp HHHHT--TTTHHHHHHHHHHC----
T ss_pred HHHHC--CCcccHHHHHHHHHHhcC
Confidence 55553 344554 58888877654
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=277.11 Aligned_cols=264 Identities=20% Similarity=0.282 Sum_probs=231.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-----CcccCCHHHhhc---CCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-----AHLADSPHSLAS---QSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-----~~~~~~~~~~~~---~~DiIi~~vp~~~~~ 119 (351)
.||||+|||+|.||..||.+|.++|++|++|||++++.+.+.+.+ +..+.+++++++ ++|+||+|||.+..+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 82 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence 468999999999999999999999999999999999999887763 233678999887 499999999777899
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHH
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPL 199 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~l 199 (351)
++++. ++.+.+.++++|||++++.+....++.+.+.++++.|+++|++|++.++..|. .++++|+++.++.++++
T Consensus 83 ~~vl~----~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pl 157 (484)
T 4gwg_A 83 DDFIE----KLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTI 157 (484)
T ss_dssp HHHHH----HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHH
T ss_pred HHHHH----HHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHH
Confidence 99998 89999999999999999999888898888888899999999999999988888 88899999999999999
Q ss_pred HHhhCc-e-------EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hcCCCCchhhhhh
Q 018694 200 FALMGK-V-------NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAI---STGAAGSKSLDLH 267 (351)
Q Consensus 200 l~~~g~-~-------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~ 267 (351)
|+.++. + .++|+.|++..+|+++|.+..+.+++++|++.++++ .|++.+++.+++ +.+...|+.++.+
T Consensus 158 l~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~ 237 (484)
T 4gwg_A 158 FQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEIT 237 (484)
T ss_dssp HHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHH
T ss_pred HHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHH
Confidence 999987 6 789999999999999999999999999999999999 999999998886 5677889999999
Q ss_pred hhhcccCCCCCccchhhHHHHH------HHHHHHHHhcCCCCc-HHHHHHHHHHHH
Q 018694 268 GSRILKRDFEPGFFVNHFVKDL------GICLKECQNMGLALP-GLALAQQLYLSL 316 (351)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~kd~------~~~~~~a~~~gv~~p-~~~~~~~l~~~~ 316 (351)
.+.+..+|+.+++.++.+.... .+..+.+.++|+|+| +.++++..+.++
T Consensus 238 ~~~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 238 ANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp HHHHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence 9888888877556666654322 378888999999999 556666666554
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=267.23 Aligned_cols=255 Identities=21% Similarity=0.313 Sum_probs=229.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----cCCcccCCHHHhhcC---CCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----IGAHLADSPHSLASQ---SDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----~g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~ 121 (351)
.||+|||+|.||..||.+|+++|++|++|||++++++.+.+ .|+..+.++++++.+ +|+||+|||.+..+++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 90 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA 90 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence 58999999999999999999999999999999999999887 578888899998877 9999999977789999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
++. ++.+.+.++++||+++++.+...+++.+.+.+.++.|+++|+++++..+..|. .++++++++..+.++++|+
T Consensus 91 vl~----~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~ 165 (497)
T 2p4q_A 91 LIN----QIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQ 165 (497)
T ss_dssp HHH----HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHH
T ss_pred HHH----HHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHH
Confidence 998 89898999999999999999888888888887889999999999998888888 7888899999999999999
Q ss_pred hhCce-------EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhhhh
Q 018694 202 LMGKV-------NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHGSR 270 (351)
Q Consensus 202 ~~g~~-------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~ 270 (351)
.++.. .++++.|.+.++|+++|.+....+.+++|++.++++ .|++++++.+++. .+...|+.++.+.+.
T Consensus 166 ~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 245 (497)
T 2p4q_A 166 SISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDI 245 (497)
T ss_dssp HHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHH
T ss_pred HhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 99863 688889999999999999999999999999999999 6999999998884 566788888888888
Q ss_pred cccCCCCCccchhhHH-----HHHH-HHHHHHHhcCCCCcHHHHH
Q 018694 271 ILKRDFEPGFFVNHFV-----KDLG-ICLKECQNMGLALPGLALA 309 (351)
Q Consensus 271 ~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~gv~~p~~~~~ 309 (351)
+.++++.+++.++.+. ||++ ++.+.++++|+++|++...
T Consensus 246 l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a 290 (497)
T 2p4q_A 246 LKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA 290 (497)
T ss_dssp HTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence 8888886668888777 7776 7899999999999998875
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=266.08 Aligned_cols=256 Identities=21% Similarity=0.335 Sum_probs=228.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCcccCCHHHhhcC---CCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAHLADSPHSLASQ---SDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~ 121 (351)
.+||+|||+|.||.+||..|+++|++|++|||++++.+.+.+. |+..+.++++++.+ +|+||+|||.+..+++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 94 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDA 94 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHH
Confidence 3689999999999999999999999999999999999888775 78888899998877 9999999976689999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
++. ++.+.+.++++||+++++.+...+++.+.+.+.++.|+++|+++++..+..+. .++++++++..+.++++|+
T Consensus 95 vl~----~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~ 169 (480)
T 2zyd_A 95 AID----SLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILT 169 (480)
T ss_dssp HHH----HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHH
T ss_pred HHH----HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHH
Confidence 998 89888989999999999999888888888887889999999999988877888 7888999999999999999
Q ss_pred hhCc--------eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hcCCCCchhhhhhhh
Q 018694 202 LMGK--------VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAI---STGAAGSKSLDLHGS 269 (351)
Q Consensus 202 ~~g~--------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~~ 269 (351)
.++. +.++|+.|.+.++|+++|.+....+.+++|++.++++ .|++++++.+++ +.+..+++.++.+.+
T Consensus 170 ~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~ 249 (480)
T 2zyd_A 170 KIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKD 249 (480)
T ss_dssp HHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHH
T ss_pred HHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 9986 3778889999999999999999999999999999999 699999999887 446678888999988
Q ss_pred hcccCCCCCccchhhHH-----HHHH-HHHHHHHhcCCCCcHHHHH
Q 018694 270 RILKRDFEPGFFVNHFV-----KDLG-ICLKECQNMGLALPGLALA 309 (351)
Q Consensus 270 ~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~gv~~p~~~~~ 309 (351)
.+.++++.+++.++.+. |+.+ ++.+.++++|+++|+++.+
T Consensus 250 ~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 250 IFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp HHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 88888887678887655 4434 7889999999999999885
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-31 Score=258.42 Aligned_cols=262 Identities=21% Similarity=0.283 Sum_probs=229.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----cCCcccCCHHHhhc---CCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----IGAHLADSPHSLAS---QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----~g~~~~~~~~~~~~---~~DiIi~~vp~~~~~~~ 121 (351)
|||+|||+|.||..+|..|+++|++|++|||++++.+.+.+ .|+..+.+++++++ ++|+||+|||.+..+++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 68999999999999999999999999999999999998887 57777889998874 89999999966678999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
++. ++.+.+.++++||+++++.+....++.+.+.+.++.|+++|+++++.....|. .++.+++++..+.++++|+
T Consensus 83 vl~----~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~ 157 (482)
T 2pgd_A 83 FIE----KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQ 157 (482)
T ss_dssp HHH----HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHH
T ss_pred HHH----HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHH
Confidence 998 88888889999999999988877788888877789999999999888877787 6788888999999999999
Q ss_pred hhCc-e-------EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---cCCCCchhhhhhhh
Q 018694 202 LMGK-V-------NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKA-GLNVELFLNAIS---TGAAGSKSLDLHGS 269 (351)
Q Consensus 202 ~~g~-~-------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~-Gi~~~~~~~~~~---~~~~~s~~~~~~~~ 269 (351)
.+|. + .++++.|.+.+.|+++|.+....+.++.|++.++++. |++.+++.+++. .+...|+..+.+.+
T Consensus 158 ~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~ 237 (482)
T 2pgd_A 158 GIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITAS 237 (482)
T ss_dssp HHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred HhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhH
Confidence 9997 5 6788899999999999999999999999999999999 999999998885 45567777777777
Q ss_pred hcccCCCCCccchhhH------HHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHH
Q 018694 270 RILKRDFEPGFFVNHF------VKDLGICLKECQNMGLALPGLA-LAQQLYLSL 316 (351)
Q Consensus 270 ~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~gv~~p~~~-~~~~l~~~~ 316 (351)
.+..+++.+++.++.+ .++..++.+.++++|+|+|++. .+++.+...
T Consensus 238 ~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 238 ILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 291 (482)
T ss_dssp HHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence 7778888777877765 3566789999999999999995 677766544
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=252.31 Aligned_cols=256 Identities=21% Similarity=0.366 Sum_probs=224.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCcccCCHHHhhcC---CCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAHLADSPHSLASQ---SDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~ 121 (351)
+|||+|||+|.||..++..|.++|++|++|||++++.+.+.+. |+..+.++++++.+ +|+||+|||.+..+++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~ 84 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA 84 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence 3789999999999999999999999999999999998888775 67778899998876 9999999976688999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
++. ++.+.+.++++||+++++.+...+++.+.+.+.++.|+++|+++++.....|. .++.+++++..+.++++|+
T Consensus 85 vl~----~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~ 159 (474)
T 2iz1_A 85 TIK----SLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFE 159 (474)
T ss_dssp HHH----HHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHH
T ss_pred HHH----HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHH
Confidence 998 88888889999999999988888888888877789999999999888777777 6778889999999999999
Q ss_pred hhCce---------EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhh
Q 018694 202 LMGKV---------NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHG 268 (351)
Q Consensus 202 ~~g~~---------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~ 268 (351)
.+|.. .++++.|.+.+.|+++|.+....+.++.|++.++++ .|++.+++.+++. .+..+++.++.+.
T Consensus 160 ~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~ 239 (474)
T 2iz1_A 160 QIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITK 239 (474)
T ss_dssp HHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHH
T ss_pred HHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhh
Confidence 98873 678889999999999999999999999999999999 7999999988874 3556788888888
Q ss_pred hhcccCCCCCc-cchhhHH-----HHHH-HHHHHHHhcCCCCcHHHHH
Q 018694 269 SRILKRDFEPG-FFVNHFV-----KDLG-ICLKECQNMGLALPGLALA 309 (351)
Q Consensus 269 ~~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~gv~~p~~~~~ 309 (351)
+.+..+++.+| +.++.+. |+.+ ++.+.++++|+++|+++.+
T Consensus 240 ~~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 240 EVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp HHTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hHhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 87777888777 7777655 5656 7899999999999999885
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=238.31 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=207.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeC--CcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR--TLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr--~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+|||+|.||..++..|.+.|++|++|++ ++++.+.+.+.|+. +++++++.++|+||+|||++...+. +.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~-~~--- 74 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGA-AR--- 74 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHH-HH---
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHH-HH---
Confidence 6899999999999999999999999999998 66777777777876 6778888999999999955555555 45
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
++.+.+.+ ++|+++++.+...+.+.+.+...+ |+++|+.+++.....+.. ++++++.. +.+++ |+.+|. +
T Consensus 75 -~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~ 145 (264)
T 1i36_A 75 -RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNI 145 (264)
T ss_dssp -HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEE
T ss_pred -HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCee
Confidence 66666655 999999988888888888887666 888999988877667776 77777655 78888 999998 7
Q ss_pred EEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhH
Q 018694 207 NYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHF 285 (351)
Q Consensus 207 ~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
+++++ .|.+.+.|+++|.+.+.+..++.|++.++++.|++.+ ..+.+..+.+.++. .+.+.+.++++.+|++ .
T Consensus 146 ~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~---~ 219 (264)
T 1i36_A 146 EVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFR--ESAISRLKSSCIHARR---R 219 (264)
T ss_dssp EECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTH--HHHHHHHHHHHHTHHH---H
T ss_pred EECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHH--HHHHHHhcCCCCcchh---h
Confidence 88887 8999999999999999999999999999999999986 77888776543443 2445566677878776 4
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLG 325 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d 325 (351)
.||++.+.+.++++ +++|++++++++++++.+.+.+..|
T Consensus 220 ~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~ 258 (264)
T 1i36_A 220 YEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA 258 (264)
T ss_dssp HHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence 79999999999999 9999999999999999887765433
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=252.67 Aligned_cols=258 Identities=21% Similarity=0.320 Sum_probs=222.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-C-------CcccCCHHHhhc---CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-G-------AHLADSPHSLAS---QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g-------~~~~~~~~~~~~---~~DiIi~~vp~~~~ 118 (351)
|||+|||+|.||..+|..|+++|++|++|||++++.+.+.+. | +..+.++++++. .+|+||+|||.+.+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 689999999999999999999999999999999998888765 5 566788888876 49999999966678
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHH
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNP 198 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ 198 (351)
+++++. ++.+.+.++++||+++++.+...+++.+.+.+.++.|+++|+.+++.....+. .++.+++++..+.+++
T Consensus 82 v~~vl~----~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ 156 (478)
T 1pgj_A 82 TDSTIE----QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRP 156 (478)
T ss_dssp HHHHHH----HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHH
T ss_pred HHHHHH----HHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHH
Confidence 999998 88888889999999999988888888888877789999999998887777777 6778889999999999
Q ss_pred HHHhhCc--------eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----cCCCCchhhhh
Q 018694 199 LFALMGK--------VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS----TGAAGSKSLDL 266 (351)
Q Consensus 199 ll~~~g~--------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~----~~~~~s~~~~~ 266 (351)
+|+.+|. +.++++.|.+.+.|+++|.+....+.++.|++.++++.|++.+++.+++. .+...++..+.
T Consensus 157 ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~ 236 (478)
T 1pgj_A 157 IVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDI 236 (478)
T ss_dssp HHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHH
T ss_pred HHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHh
Confidence 9999986 36788899999999999999999999999999999999999999999886 55666777777
Q ss_pred hhhhcccCCCCCc-cchhhHH-----HHH-HHHHHHHHhcCCCCcHHHH-HHHHH
Q 018694 267 HGSRILKRDFEPG-FFVNHFV-----KDL-GICLKECQNMGLALPGLAL-AQQLY 313 (351)
Q Consensus 267 ~~~~~~~~~~~~~-~~~~~~~-----kd~-~~~~~~a~~~gv~~p~~~~-~~~l~ 313 (351)
+.+.+.++++ +| +.++.+. |++ +++.+.++++|+++|+++. ++..+
T Consensus 237 ~~~~l~~~d~-~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ 290 (478)
T 1pgj_A 237 SIAAARAKDK-DGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQ 290 (478)
T ss_dssp HHHHHHCBCT-TSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred hchhhhcCCC-CChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 7776767777 44 7777665 444 6999999999999999998 54333
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=236.27 Aligned_cols=252 Identities=15% Similarity=0.176 Sum_probs=208.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~Di 108 (351)
+|||+|||+|.||..+|..|+++|++|++||+++++++.+++. ++..++++++++.++|+
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv 81 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI 81 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence 3899999999999999999999999999999999988777652 24567788888999999
Q ss_pred EEEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--------CCcEEeccCC
Q 018694 109 VFSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--------NCSAIDAPVS 171 (351)
Q Consensus 109 Ii~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--------~~~~v~~pv~ 171 (351)
||+|||.+. .+++++. ++.+++.++++||+.|+..|++.+++.+.+.+. ...++.+|.+
T Consensus 82 ViiaVptp~~~~~~~dl~~v~~v~~----~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~ 157 (450)
T 3gg2_A 82 IFIAVGTPAGEDGSADMSYVLDAAR----SIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEF 157 (450)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHHH----HHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred EEEEcCCCcccCCCcChHHHHHHHH----HHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhh
Confidence 999997664 7888998 888889999999999999999998888776542 2345666766
Q ss_pred CCchhh----ccCceeEEecC-CHHHHHHHHHHHHhhCc---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018694 172 GGDRGA----KTGTLAIFAGG-DESVVQKLNPLFALMGK---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKA 243 (351)
Q Consensus 172 ~~~~~~----~~g~~~~~~~g-~~~~~~~v~~ll~~~g~---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~ 243 (351)
..+... .... .+++|+ +++..+.++++++.++. ++++++.+.+.+.|++.|.+....+.+++|+..++++.
T Consensus 158 a~eG~~~~~~~~p~-~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 236 (450)
T 3gg2_A 158 LKEGNAIDDFMKPD-RVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERV 236 (450)
T ss_dssp CCTTSHHHHHHSCS-CEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhccCCC-EEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543222 1122 355554 68999999999998875 67888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCC--ccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 244 GLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEP--GFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 244 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
|++.+++.+.+.... ++....+.| ||...++.||+.++.+.++++|+++|+++++.++.+..
T Consensus 237 Gid~~~v~~~~~~~~-----------rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~ 300 (450)
T 3gg2_A 237 GADVSMVRLGIGSDS-----------RIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ 300 (450)
T ss_dssp TCCHHHHHHHHHTST-----------TTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCC-----------CCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999987753 122223344 57788899999999999999999999999998877655
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=237.54 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=210.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------------CCcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------------GAHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~DiI 109 (351)
-||+|||+|.||..+|..|+++||+|++||+++++++.+++. ++..++++.++++++|+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 589999999999999999999999999999999998887652 245678898999999999
Q ss_pred EEecCChh----------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCCCch
Q 018694 110 FSIVGYPS----------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSGGDR 175 (351)
Q Consensus 110 i~~vp~~~----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~~~~ 175 (351)
|+|||.+. .+++++. ++.+.+.++++||+.|+..|++.+++.+.+.+. .+.++.+|.+..+.
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~~----~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG 164 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAAR----EIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREG 164 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHHH----HHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTT
T ss_pred EEEcCCCCccccCCccHHHHHHHHH----HHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCccccccc
Confidence 99997664 5899998 899999999999999999999999998877653 35667777665443
Q ss_pred hh----ccCceeEEecC-CHHHHHHHHHHHHhhCc----eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018694 176 GA----KTGTLAIFAGG-DESVVQKLNPLFALMGK----VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLN 246 (351)
Q Consensus 176 ~~----~~g~~~~~~~g-~~~~~~~v~~ll~~~g~----~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 246 (351)
.+ .... .+++|+ +++..+.++++++.++. ++++++.+.+...|+++|++....+.+++|+..+|++.|++
T Consensus 165 ~a~~d~~~p~-~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD 243 (446)
T 4a7p_A 165 AAIEDFKRPD-RVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGAD 243 (446)
T ss_dssp SHHHHHHSCS-CEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhccCCC-EEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 32 1122 455666 58889999999998875 47888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 247 VELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 247 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
.+++.+.+...... ...++ ...+||...++.||+.++.+.++++|+++|+++++.++.....
T Consensus 244 ~~~v~~~~~~~~ri-------g~~~l--~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~~ 305 (446)
T 4a7p_A 244 VQEVSRGIGMDNRI-------GGKFL--HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDARK 305 (446)
T ss_dssp HHHHHHHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-------CCccC--CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999876421 11111 2235778889999999999999999999999999988776654
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=231.73 Aligned_cols=256 Identities=17% Similarity=0.113 Sum_probs=206.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcc----cchhHHh---------------------cC-CcccCCH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLS----KAQPLLD---------------------IG-AHLADSP 99 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~----~~~~~~~---------------------~g-~~~~~~~ 99 (351)
.+|||+|||+|.||..+|..|+++ |+ +|++||++++ +++.+++ .| +..+++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 358999999999999999999999 99 9999999999 7666654 12 344455
Q ss_pred HHhhcCCCEEEEecCChh-----------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHh-c-CC----
Q 018694 100 HSLASQSDVVFSIVGYPS-----------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAAS-S-KN---- 162 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp~~~-----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~-~-~~---- 162 (351)
.+++.++|+||+|||.+. .+..+.. ++.+++.++++||+.|+..|++.+++.+.+. + .+
T Consensus 96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~----~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~ 171 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIR----NVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAG 171 (478)
T ss_dssp GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHH----HHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBT
T ss_pred HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHH----HHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcC
Confidence 677889999999997763 2566666 7888889999999999999999888876332 1 22
Q ss_pred --CcEEeccCCCCchhhccCc---eeEEecCCHHHHHHHHHHHHhh-Cc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHH
Q 018694 163 --CSAIDAPVSGGDRGAKTGT---LAIFAGGDESVVQKLNPLFALM-GK-VNYMGGSGKGQFAKLANQITIATTMVGLVE 235 (351)
Q Consensus 163 --~~~v~~pv~~~~~~~~~g~---~~~~~~g~~~~~~~v~~ll~~~-g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E 235 (351)
+.++++|.+..+-.+..+. ..++.|++++..+.++++++.+ +. ++++++.+.+...|+++|++....+++++|
T Consensus 172 ~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE 251 (478)
T 3g79_A 172 EDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQ 251 (478)
T ss_dssp TTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999886654432221 2467888999999999999999 66 888999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCC-------CcHH
Q 018694 236 GMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLA-------LPGL 306 (351)
Q Consensus 236 a~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~-------~p~~ 306 (351)
+..+|++.|++.+++.+.+..... + ++..+.+.||+ ...++.||+.++.+.++++|++ ++++
T Consensus 252 ~~~l~e~~GiD~~~v~~~~~~~~~----~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li 322 (478)
T 3g79_A 252 LALYCEAMGINVYDVRTGVDSLKG----E-----GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIY 322 (478)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTSCC----S-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCch----h-----hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHH
Confidence 999999999999999999876421 0 33445566665 5678999999999999999987 8999
Q ss_pred HHHHHHHHHHH
Q 018694 307 ALAQQLYLSLK 317 (351)
Q Consensus 307 ~~~~~l~~~~~ 317 (351)
+++.++-....
T Consensus 323 ~~~~~iN~~~~ 333 (478)
T 3g79_A 323 VLARKVNDFMP 333 (478)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877665543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-27 Score=222.42 Aligned_cols=251 Identities=16% Similarity=0.127 Sum_probs=204.2
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc------------------CCcccCCHHHhhcCCCE
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI------------------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~~~~~~~Di 108 (351)
+.+|||+|||+|.||..+|..|++ |++|++||+++++++.+++. ++..++++++++.++|+
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv 112 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADY 112 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence 456899999999999999999998 99999999999988877652 35667888899999999
Q ss_pred EEEecCChh----------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhc
Q 018694 109 VFSIVGYPS----------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAK 178 (351)
Q Consensus 109 Ii~~vp~~~----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~ 178 (351)
||+|||.+. .+++++. ++.+ +.++++||+.|++.|++.+++.+.+...+ ++.+|.++.+..+.
T Consensus 113 ViiaVPt~~~~~~~~~Dl~~V~~v~~----~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~ 185 (432)
T 3pid_A 113 VIIATPTDYDPKTNYFNTSTVEAVIR----DVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRAL 185 (432)
T ss_dssp EEECCCCEEETTTTEEECHHHHHHHH----HHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHH
T ss_pred EEEeCCCccccccccccHHHHHHHHH----HHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhh
Confidence 999998762 5788888 8888 89999999999999999999999887554 45589998876655
Q ss_pred cCce---eEEecCCHHHHHHHHHHHHh--hCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 179 TGTL---AIFAGGDESVVQKLNPLFAL--MGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 179 ~g~~---~~~~~g~~~~~~~v~~ll~~--~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
.+.+ .+++|++++..+++.++|.. ++. .+++++.+.|.+.|+++|.+....+++++|+..+|++.|++.++++
T Consensus 186 ~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~ 265 (432)
T 3pid_A 186 YDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQII 265 (432)
T ss_dssp HHHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 5444 67889988888999999986 443 4667889999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 252 NAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 252 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
+.+.....- ...+.+ -.+|+.-.++.||..++.. +..|++.++++++.+.-+..
T Consensus 266 ~~~~~dpri-------g~~~~~--pg~G~GG~C~pkD~~~L~~--~~~~~~~~li~~~~~~N~~~ 319 (432)
T 3pid_A 266 EGVCLDPRI-------GNHYNN--PSFGYGGYCLPKDTKQLLA--NYESVPNNIIAAIVDANRTR 319 (432)
T ss_dssp HHHHTSTTT-------CSSSCC--CCSCCCTTTHHHHHHHHHH--HTTTSCCSHHHHHHHHHHHH
T ss_pred HHHccCCCC-------CcccCC--CCCCCcccchhhhHHHHHH--HhcCCchhHHHHHHHHHHhh
Confidence 998765421 111111 1124556678999987764 44689999999888776554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=230.57 Aligned_cols=252 Identities=21% Similarity=0.216 Sum_probs=199.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------------CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------------AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.||..+|..|+++|++|++||+++++++.+++.+ +..++++++.+.++|+|
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvv 88 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQ 88 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEE
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEE
Confidence 8999999999999999999999999999999999888876642 34566777788899999
Q ss_pred EEecCCh---------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC---C-----CcEEeccCCC
Q 018694 110 FSIVGYP---------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK---N-----CSAIDAPVSG 172 (351)
Q Consensus 110 i~~vp~~---------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~---~-----~~~v~~pv~~ 172 (351)
|+|||.| ..+++++. ++.+.+.++++||+.|+..+++.+.+.+.+.+. + ..+..+|.+.
T Consensus 89 iiaVptp~~~~~~~dl~~v~~v~~----~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~ 164 (478)
T 2y0c_A 89 FIAVGTPPDEDGSADLQYVLAAAR----NIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFL 164 (478)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHH----HHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred EEEeCCCcccCCCccHHHHHHHHH----HHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhh
Confidence 9999765 78999998 888889999999999988888888877766532 2 2234445443
Q ss_pred Cchhh----ccCceeEEecCC-H----HHHHHHHHHHHhhCc---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 173 GDRGA----KTGTLAIFAGGD-E----SVVQKLNPLFALMGK---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYA 240 (351)
Q Consensus 173 ~~~~~----~~g~~~~~~~g~-~----~~~~~v~~ll~~~g~---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la 240 (351)
.+... .... .++.|++ + +..+.++++++.+.. ++++++.+.+.+.|++.|.+....+.+++|+..++
T Consensus 165 ~eG~~~~~~~~p~-~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la 243 (478)
T 2y0c_A 165 KEGAAVDDFTRPD-RIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLA 243 (478)
T ss_dssp CTTCHHHHHHSCS-CEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeccCCCC-EEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1111 3445553 5 688899999998763 78888999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 241 HKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 241 ~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
++.|++.+++.+.+... +++..+.+.||+ ...++.||.+++.+.++++|+++|++++++++++...
T Consensus 244 ~~~Gid~~~v~~~i~~~-----------~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~~ 311 (478)
T 2y0c_A 244 DRFGADIEAVRRGIGSD-----------PRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQK 311 (478)
T ss_dssp HHTTCCHHHHHHHHHTS-----------TTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHhcC-----------CccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhH
Confidence 99999999998887632 222223444544 3345689999999999999999999999999887754
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=226.67 Aligned_cols=277 Identities=14% Similarity=0.080 Sum_probs=205.2
Q ss_pred CCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------CcccCCHHHhhcCCCE
Q 018694 43 DPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------AHLADSPHSLASQSDV 108 (351)
Q Consensus 43 ~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~~Di 108 (351)
.+|++.+|||+|||+|+||+++|..|+++|++|++|+|++++++.+++.+ +..++++++++.++|+
T Consensus 23 ~~m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 23 NAMEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp ----CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred hcccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 34555568999999999999999999999999999999999888887754 2345788888999999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH----HHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL----ASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~----~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
||+|| +++.+++++. ++.+.+.++++||+++++.... .+.+.+.++...+.++.+|.+.............
T Consensus 103 VilaV-p~~~~~~vl~----~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~v 177 (356)
T 3k96_A 103 ILIVV-PSFAFHEVIT----RMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVS 177 (356)
T ss_dssp EEECC-CHHHHHHHHH----HHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEE
T ss_pred EEECC-CHHHHHHHHH----HHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEE
Confidence 99999 7889999999 8999999999999999965432 2455555654566788899998877766666566
Q ss_pred EecCCHHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018694 185 FAGGDESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLN 246 (351)
Q Consensus 185 ~~~g~~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 246 (351)
+.+.+++..+.++++|+..+. ++...+. |.+..+|+..|.....+..++.|+..++++.|.+
T Consensus 178 ia~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~ 257 (356)
T 3k96_A 178 LASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGK 257 (356)
T ss_dssp EEESCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EecCCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 677799999999999998887 5555554 3444456677777778999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhhhhhhhcccCCC----CCcc----------chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 018694 247 VELFLNAISTGAAGSKSLDLHGSRILKRDF----EPGF----------FVNHFVKDLGICLKECQNMGLALPGLALAQQL 312 (351)
Q Consensus 247 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~----------~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l 312 (351)
++++.++...+ -....++++...|+.+ ..|. .+.+..++.+.+.++++++|+++|+++++|++
T Consensus 258 ~~t~~gl~g~g---Dl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~i 334 (356)
T 3k96_A 258 QETLTGLAGLG---DLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRI 334 (356)
T ss_dssp HHHHTSTTTHH---HHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHhhcccchhh---HHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99887542111 1222223322222111 0122 23345677789999999999999999999998
Q ss_pred HHHHHHcCCCCCChHHHHHHHH
Q 018694 313 YLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 313 ~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
+. +..+....++.+.
T Consensus 335 l~-------~~~~~~~~~~~l~ 349 (356)
T 3k96_A 335 LH-------EDLDPQQAVQELL 349 (356)
T ss_dssp HH-------SCCCHHHHHHHHH
T ss_pred Hh-------CCCCHHHHHHHHH
Confidence 85 3345555555443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=229.25 Aligned_cols=252 Identities=16% Similarity=0.102 Sum_probs=198.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------C-CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------G-AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.||..+|..|++.|++|++||+++++++.+++. | +..++++++++.++|+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 699999999999999999999999999999999988877652 2 55667888888999999
Q ss_pred EEecCChhH---------HHHHhhCCCCCcccCCCC---CcEEEecCCCChhH-HHHHHHHHhcC-CC------cEEecc
Q 018694 110 FSIVGYPSD---------VRHVLLHPSSGALSGLRP---GGIIVDMTTSEPSL-ASELSAAASSK-NC------SAIDAP 169 (351)
Q Consensus 110 i~~vp~~~~---------~~~v~~~~~~~i~~~l~~---~~~ii~~s~~~~~~-~~~l~~~~~~~-~~------~~v~~p 169 (351)
|+|||.+.+ +++++. ++.+.+.+ +++||+.|+..+++ .+.+.+.+.+. +. .+...|
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~~----~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~P 156 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVCR----EIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP 156 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHH----HHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred EEEcCCCcccCCCcchHHHHHHHH----HHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECc
Confidence 999977766 888888 88888888 89999999988888 66677666542 32 233445
Q ss_pred CCCCchhh----ccCceeEEecC-CHHHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018694 170 VSGGDRGA----KTGTLAIFAGG-DESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAG 244 (351)
Q Consensus 170 v~~~~~~~----~~g~~~~~~~g-~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~G 244 (351)
....+-.. .... .++.|+ +++..+.++++++.++..+++++.+.+.+.|++.|.+....+.+++|+..++++.|
T Consensus 157 e~~~~G~~~~~~~~~~-~iv~G~~~~~~~~~~~~l~~~~~~~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~G 235 (436)
T 1mv8_A 157 EFLRESTAIKDYDFPP-MTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVG 235 (436)
T ss_dssp CCCCTTSHHHHHHSCS-CEEEEESSHHHHHHHHHHHTTSSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccchhccCCC-EEEEEcCCHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44322111 1111 344555 48888999999999988444477899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCchhhhhhhhhcc--cCCCCC--ccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 245 LNVELFLNAISTGAAGSKSLDLHGSRIL--KRDFEP--GFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 245 i~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~--~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
++.+++.+.+.... ++. .+.+.+ ++...++.||..++.+.++++|+++|++++++++.....
T Consensus 236 id~~~v~~~~~~~~-----------r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~~ 301 (436)
T 1mv8_A 236 VDGREVMDVICQDH-----------KLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQV 301 (436)
T ss_dssp SCHHHHHHHHTTCT-----------TTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHHH
T ss_pred CCHHHHHHHhcCCC-----------CCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHhH
Confidence 99999988876522 121 234444 566678899999999999999999999999988766543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=227.79 Aligned_cols=239 Identities=18% Similarity=0.233 Sum_probs=191.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~D 107 (351)
||||+|||+|.||..+|..|++. |++|++||+++++++.+++ .++..++++++++.++|
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 58999999999999999999998 8999999999988776532 24556678888888999
Q ss_pred EEEEecCChhH--------------HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 108 VVFSIVGYPSD--------------VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 108 iIi~~vp~~~~--------------~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
+||+|||.+.. +.+++. ++.+.+.++++||++|+..+++.+.+.+.+.+.+..+++.++..+
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~----~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~ 160 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACAR----RIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSN 160 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHH----HHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHHH----HHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeC
Confidence 99999976654 456666 677778899999999999999988888888765443444444444
Q ss_pred chhhccCcee--------EEecC-----CHHHHHHHHHHHHhh-Cc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 174 DRGAKTGTLA--------IFAGG-----DESVVQKLNPLFALM-GK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMV 238 (351)
Q Consensus 174 ~~~~~~g~~~--------~~~~g-----~~~~~~~v~~ll~~~-g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~ 238 (351)
+.....|... +++|+ +++..+.++++++.+ +. ++++++.+.+.+.|++.|.+....+.+++|+..
T Consensus 161 Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~ 240 (467)
T 2q3e_A 161 PEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISA 240 (467)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444432 55666 778889999999998 65 888899999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCC--ccchhhHHHHHHHHHHHHHhcCCC
Q 018694 239 YAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEP--GFFVNHFVKDLGICLKECQNMGLA 302 (351)
Q Consensus 239 la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gv~ 302 (351)
++++.|++.+++.+.+...... .+. .+.| ||...++.||+.++.+.++++|++
T Consensus 241 l~~~~Gid~~~v~~~~~~~~~~-------~~~----~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~ 295 (467)
T 2q3e_A 241 LCEATGADVEEVATAIGMDQRI-------GNK----FLKASVGFGGSCFQKDVLNLVYLCEALNLP 295 (467)
T ss_dssp HHHHHTCCHHHHHHHHHTSTTT-------CSS----SCCCCSCCCSSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhCcCHHHHHHHHcCCCCC-------Ccc----ccCCCCCCCCccHHHHHHHHHHHHHHcCCc
Confidence 9999999999999998775421 111 1223 356667899999999999999987
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=225.76 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=200.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhc-------------------CCcccCCHHHhhcCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDI-------------------GAHLADSPHSLASQS 106 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~ 106 (351)
+||||+|||+|.||..+|..|+++ |++|++||+++++++.+++. ++..++++.+.+.++
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a 87 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA 87 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence 468999999999999999999998 79999999999988777642 234556777888899
Q ss_pred CEEEEecCChh--------------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc-CC----C--cE
Q 018694 107 DVVFSIVGYPS--------------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS-KN----C--SA 165 (351)
Q Consensus 107 DiIi~~vp~~~--------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~-~~----~--~~ 165 (351)
|+||+|||.+. .+++++. ++.+++.++++||+.|+..+++.+.+.+.+.+ .+ . .+
T Consensus 88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~----~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v 163 (481)
T 2o3j_A 88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSR----TIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQV 163 (481)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHH----HHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEE
T ss_pred CEEEEecCCccccccccccCCCcHHHHHHHHH----HHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEE
Confidence 99999997654 3788888 88888899999999999999999888887765 43 2 24
Q ss_pred EeccCCCCchhhcc---CceeEEecCCH-----HHHHHHHHHHHhhCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHH
Q 018694 166 IDAPVSGGDRGAKT---GTLAIFAGGDE-----SVVQKLNPLFALMGK--VNYMGGSGKGQFAKLANQITIATTMVGLVE 235 (351)
Q Consensus 166 v~~pv~~~~~~~~~---g~~~~~~~g~~-----~~~~~v~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E 235 (351)
..+|.+..+..... ....+++|++. +..+.++++++.++. ++++++.+.+.+.|++.|.+....+.+++|
T Consensus 164 ~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE 243 (481)
T 2o3j_A 164 LSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINS 243 (481)
T ss_dssp EECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55676654332211 11134555532 577889999999984 778888999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCC--CcHHHHHHH
Q 018694 236 GMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLA--LPGLALAQQ 311 (351)
Q Consensus 236 a~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~ 311 (351)
+..++++.|++.+++.+.+.... ++....+.||+ ...++.||+.++.+.++++|++ +|+++++.+
T Consensus 244 ~~~la~~~Gid~~~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~ 312 (481)
T 2o3j_A 244 ISAVCEATGAEISEVAHAVGYDT-----------RIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVIN 312 (481)
T ss_dssp HHHHHHHHSCCHHHHHHHHHTST-----------TTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHccCC-----------CCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 99999999999999999987653 12223345554 6678899999999999999999 898888765
Q ss_pred HHHHH
Q 018694 312 LYLSL 316 (351)
Q Consensus 312 l~~~~ 316 (351)
.-...
T Consensus 313 ~N~~~ 317 (481)
T 2o3j_A 313 INNWQ 317 (481)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 54443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=212.72 Aligned_cols=261 Identities=13% Similarity=0.120 Sum_probs=187.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC------------CHHHhhc---CCCEEEEe
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD------------SPHSLAS---QSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~------------~~~~~~~---~~DiIi~~ 112 (351)
+||||+|||+|.||..+|..|.++|++|++|+|++++.+.+.+.|+.... +.++... ++|+||+|
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 81 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL 81 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence 46899999999999999999999999999999999988888777644321 3344444 89999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE------eccCCCC--chhhccCceeE
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI------DAPVSGG--DRGAKTGTLAI 184 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v------~~pv~~~--~~~~~~g~~~~ 184 (351)
+ ++..+++++. ++.+.+.++++||+++++.. ..+.+.+.++.. .++ .++..+. ......+.+.+
T Consensus 82 v-~~~~~~~v~~----~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~--~vi~g~~~~~~~~~~p~~~~~~~~g~~~i 153 (316)
T 2ew2_A 82 T-KAQQLDAMFK----AIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKE--NILVGITMWTAGLEGPGRVKLLGDGEIEL 153 (316)
T ss_dssp S-CHHHHHHHHH----HHGGGCCTTCEEEECCSSSC-THHHHTTTSCGG--GEEEEEECCCCEEEETTEEEECSCCCEEE
T ss_pred e-ccccHHHHHH----HHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCc--cEEEEEeeeeeEEcCCCEEEEecCCcEEE
Confidence 9 6788999998 88888889999999998743 445566555432 232 2222221 11122344444
Q ss_pred Ee--cCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 018694 185 FA--GGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITI---------------------ATTMVGLVEGMVYA 240 (351)
Q Consensus 185 ~~--~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~---------------------~~~~~~~~Ea~~la 240 (351)
.. +++++..+.+.++|+.+|. +.+.++.+.+.|.|++.|... ..+..++.|+..++
T Consensus 154 ~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la 233 (316)
T 2ew2_A 154 ENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVA 233 (316)
T ss_dssp EESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred eecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 32 4477888999999999998 777788999999999999753 34668899999999
Q ss_pred HHcCCCH--HHHHHHHhcCCCCchhhhhhhhhcccCCC-CCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 241 HKAGLNV--ELFLNAISTGAAGSKSLDLHGSRILKRDF-EPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 241 ~~~Gi~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
++.|+++ +.+.+.+............+ +.+. .++ ..++..+ +.++.++++++++++|+++|+++.++++++...
T Consensus 234 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~ 310 (316)
T 2ew2_A 234 EKEAIYLDQAEVYTHIVQTYDPNGIGLHY-PSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKE 310 (316)
T ss_dssp HHTTCCCCHHHHHHHHHHTTCTTTTTTSC-CHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHhccccCCCCC-cHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999986 45556654322111001111 1111 233 3444555 678999999999999999999999999998876
Q ss_pred Hc
Q 018694 318 AH 319 (351)
Q Consensus 318 ~~ 319 (351)
..
T Consensus 311 ~~ 312 (316)
T 2ew2_A 311 EL 312 (316)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=211.48 Aligned_cols=247 Identities=17% Similarity=0.120 Sum_probs=195.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC------------------cccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA------------------HLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~------------------~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|.||..+|..|++ |++|++|||++++++.+++.+. ..++++.+.+.++|+||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 699999999999999999998 9999999999999888876654 345677778889999999
Q ss_pred ecCChh----------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhc---
Q 018694 112 IVGYPS----------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAK--- 178 (351)
Q Consensus 112 ~vp~~~----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~--- 178 (351)
|||.+. .+++++. ++.+ +.++++||+.++..+++.+.+.+.+... .++.+|.+..+....
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~~----~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~ 152 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVIK----EVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDN 152 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHHH----HHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHH
T ss_pred ecCCCcccCCCCccHHHHHHHHH----HHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhcc
Confidence 997663 5888998 8888 8899999998888899999998887644 677778765443221
Q ss_pred cCceeEEecCCH-------HHHHHHHHHHHh-hCc---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018694 179 TGTLAIFAGGDE-------SVVQKLNPLFAL-MGK---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNV 247 (351)
Q Consensus 179 ~g~~~~~~~g~~-------~~~~~v~~ll~~-~g~---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 247 (351)
...-.++.|+++ +..+.+.++|.. ... ++++++.+.+.|.|++.|.+....+.+++|+..++++.|++.
T Consensus 153 ~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~ 232 (402)
T 1dlj_A 153 LYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNS 232 (402)
T ss_dssp HSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 111125566654 556677777764 322 577889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhhcccCCCCC--ccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 248 ELFLNAISTGAAGSKSLDLHGSRILKRDFEP--GFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 248 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+++.+.+..... +....+.| ||...++.||+.++...++ |+++|+++++.+.-....
T Consensus 233 ~~v~~~~~~~~r-----------i~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~~ 291 (402)
T 1dlj_A 233 HMIIQGISYDDR-----------IGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVRK 291 (402)
T ss_dssp HHHHHHHHTSTT-----------TCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-----------CCcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHhH
Confidence 999999876541 11122335 5677899999999988884 899999998877666543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=212.40 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=184.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC--------------------cccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA--------------------HLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~--------------------~~~~~~~~~~~~~DiI 109 (351)
.|..|||+|.||..+|..|+++||+|++||+++++++.+++... ..+++ ++++|+|
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~~~aDvv 87 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----PEASDVF 87 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----CCCCSEE
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----hhhCCEE
Confidence 58999999999999999999999999999999999988876421 12222 3579999
Q ss_pred EEecCChh-----------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc-CC------CcEEeccCC
Q 018694 110 FSIVGYPS-----------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS-KN------CSAIDAPVS 171 (351)
Q Consensus 110 i~~vp~~~-----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~-~~------~~~v~~pv~ 171 (351)
|+|||.+. .+..+.. ++.+++.++++||+.||+.|++.+++.+.+.+ .+ +.++++|.+
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~----~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~ 163 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALD----SILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPER 163 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHH----HHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCC
T ss_pred EEEeCCCccccccCCccHHHHHHHHH----HHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCc
Confidence 99998776 3677777 88889999999999999999999998776533 33 367899987
Q ss_pred CCchhhccC---ceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018694 172 GGDRGAKTG---TLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNV 247 (351)
Q Consensus 172 ~~~~~~~~g---~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 247 (351)
..+-.+..+ ...++.|++++..+.++++++.++. .+++++.+.|...|+++|++....+++++|+..+|++.|++.
T Consensus 164 ~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~ 243 (431)
T 3ojo_A 164 VLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINV 243 (431)
T ss_dssp CCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 654433222 2256778899999999999999987 778889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018694 248 ELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYL 314 (351)
Q Consensus 248 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~ 314 (351)
+++.+.+...... .++ ...+|+.-.++.||..++...+++.| ++++++.+.-.
T Consensus 244 ~~v~~~~~~~~ri---------~~l--~pG~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~ 296 (431)
T 3ojo_A 244 LDVIEMANKHPRV---------NIH--QPGPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINN 296 (431)
T ss_dssp HHHHHHHTTSTTC---------CCC--CCCSCCCCCCBCSCC---------CC---HHHHHHHHHHH
T ss_pred HHHHHHHccCCCc---------ccC--CCCCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHH
Confidence 9999998755321 011 11234455566788887888888776 66666554443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-26 Score=209.69 Aligned_cols=259 Identities=16% Similarity=0.093 Sum_probs=175.7
Q ss_pred CCCCCCeEEEEccChhhHHHHHHHHHC-----C-CeEEEEeCCcccchhHHh-cCCcccC-------------CHHHhhc
Q 018694 45 VCPTNTRIGWIGTGVMGRSMCAHLLNA-----G-YTVTVFNRTLSKAQPLLD-IGAHLAD-------------SPHSLAS 104 (351)
Q Consensus 45 ~~~~~~kI~iIG~G~mG~~ia~~L~~~-----g-~~V~~~dr~~~~~~~~~~-~g~~~~~-------------~~~~~~~ 104 (351)
|++++|||+|||+|+||..+|..|.++ | ++|++|+| +++.+.+.+ .|+.... +..+.+.
T Consensus 4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVG 82 (317)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHC
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccC
Confidence 455668999999999999999999998 9 99999999 788888888 6765442 3345567
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc----CCCcEEeccCCCC-c-hhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS----KNCSAIDAPVSGG-D-RGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~-~-~~~~ 178 (351)
++|+||+|| ++.++++++. ++.+.+.++++||+++++ .+..+.+.+.++. .++.++.+++.+. . ....
T Consensus 83 ~~D~vil~v-k~~~~~~v~~----~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~ 156 (317)
T 2qyt_A 83 TVDYILFCT-KDYDMERGVA----EIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEA 156 (317)
T ss_dssp CEEEEEECC-SSSCHHHHHH----HHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEec-CcccHHHHHH----HHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcC
Confidence 899999999 7777899998 888888888999999988 4555566666643 2334455555431 1 1222
Q ss_pred cCceeEEec----CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH-------------------HHHHHH
Q 018694 179 TGTLAIFAG----GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT-------------------TMVGLV 234 (351)
Q Consensus 179 ~g~~~~~~~----g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~-------------------~~~~~~ 234 (351)
.+...++.+ ++.+.. .+.++|+..|. +.+.++.+.+.|.|++.|...+. +..++.
T Consensus 157 ~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~ 235 (317)
T 2qyt_A 157 DRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLE 235 (317)
T ss_dssp EEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 333332322 246666 89999999998 77788899999999999997653 448899
Q ss_pred HHHHHHHHcCCCHH--HHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 018694 235 EGMVYAHKAGLNVE--LFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQL 312 (351)
Q Consensus 235 Ea~~la~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l 312 (351)
|+..++++.|++.+ .+.+.+.... .......+.+. .|+..++.++. ....++++++++++|+++|+++.++++
T Consensus 236 E~~~v~~a~G~~~~~~~~~~~~~~~~---~~~~~~~~sm~-~d~~~g~~~E~-~~~~g~~~~~a~~~gv~~P~~~~~~~~ 310 (317)
T 2qyt_A 236 EVAELFRAKYGQVPDDVVQQLLDKQR---KMPPESTSSMH-SDFLQGGSTEV-ETLTGYVVREAEALRVDLPMYKRMYRE 310 (317)
T ss_dssp HHHHHHHHHTSCCCSSHHHHHHHHHH---HC----------------------CTTTHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHh---ccCCCCCChHH-HHHHcCCccCH-HHHhhHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999863 4455443211 00111112222 24444443221 123589999999999999999999988
Q ss_pred HHHH
Q 018694 313 YLSL 316 (351)
Q Consensus 313 ~~~~ 316 (351)
++..
T Consensus 311 ~~~~ 314 (317)
T 2qyt_A 311 LVSR 314 (317)
T ss_dssp TCC-
T ss_pred HHHH
Confidence 7543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=201.64 Aligned_cols=248 Identities=16% Similarity=0.105 Sum_probs=178.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC---C----c-ccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG---A----H-LADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g---~----~-~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
|||+|||+|.||..+|..|.++|++|++|+|++++.+.+...+ . . ..++ .+.+.++|+||+|+ ++..+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v-~~~~~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTL-KAWQVSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECS-CGGGHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEe-cHHhHHH
Confidence 6899999999999999999999999999999988776654433 1 1 1233 45677899999999 7777899
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc--CCCc----EEeccCCCCchhhccCceeEEe-cCCHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS--KNCS----AIDAPVSGGDRGAKTGTLAIFA-GGDESVVQ 194 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~--~~~~----~v~~pv~~~~~~~~~g~~~~~~-~g~~~~~~ 194 (351)
++. ++.+.+.++++||+++++. +..+.+.+.++. .+.. +..+| . ......+.+.+.. +++++..+
T Consensus 79 v~~----~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~ 150 (291)
T 1ks9_A 79 AVK----SLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYS 150 (291)
T ss_dssp HHH----HHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCT
T ss_pred HHH----HHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHH
Confidence 998 8888888899999998874 433445444432 1222 12334 2 2233345544443 34566778
Q ss_pred HHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH---
Q 018694 195 KLNPLFALMGK-VNYMGGSGKGQFAKLANQITI------------------ATTMVGLVEGMVYAHKAGLNV--ELF--- 250 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~------------------~~~~~~~~Ea~~la~~~Gi~~--~~~--- 250 (351)
.++++|+.+|. +++.++.+.+.|.|++.|... ..+..++.|+..++++.|++. +.+
T Consensus 151 ~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~ 230 (291)
T 1ks9_A 151 YLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDY 230 (291)
T ss_dssp HHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999998 788888999999999999988 577889999999999999986 444
Q ss_pred -HHHHhcC-CCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 251 -LNAISTG-AAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 251 -~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
.+++... ...+.++. .+.. +...+. ..+.++++++++++|+++|+++.++++++...
T Consensus 231 ~~~~~~~~~~~~ssm~~----d~~~-----g~~~e~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 231 VMQVIDATAENISSMLQ----DIRA-----LRHTEI-DYINGFLLRRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp HHHHHHHTTTCCCHHHH----HHHT-----TCCCSG-GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCChHHH----HHHc-----CCccHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 3333322 12222221 1122 222222 24578999999999999999999999998764
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=192.64 Aligned_cols=248 Identities=13% Similarity=0.149 Sum_probs=182.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+|||+|.||..++..|.+.| ++|++|||++++.+.+.+. |+....++++++ ++|+||+|+| +.++++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~--- 75 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACK--- 75 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHT---
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHH---
Confidence 68999999999999999999999 9999999999998888776 888888888888 9999999995 999999998
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK 205 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~ 205 (351)
++.+ . +++|++++++.+. +.+.+.++. +.+++++ +.+.+.....|...++.++ +++..+.++++|+.+|.
T Consensus 76 -~l~~--~-~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~ 147 (263)
T 1yqg_A 76 -NIRT--N-GALVLSVAAGLSV--GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL 147 (263)
T ss_dssp -TCCC--T-TCEEEECCTTCCH--HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE
T ss_pred -Hhcc--C-CCEEEEecCCCCH--HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCC
Confidence 7766 4 8899999666443 566666653 5677776 4443444445555566666 78889999999999998
Q ss_pred eEEcC-CccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCch-hhhhhh--h-hcccCCCCC
Q 018694 206 VNYMG-GSGKGQFAKLA--NQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSK-SLDLHG--S-RILKRDFEP 278 (351)
Q Consensus 206 ~~~~g-~~g~a~~~kl~--~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~--~-~~~~~~~~~ 278 (351)
.++++ +........+. .+.+...+...+.| .+++.|++.+++.+++..+..++. ++.... + .+.++.+.|
T Consensus 148 ~~~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e---~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (263)
T 1yqg_A 148 TVWLDDEEKMHGITGISGSGPAYVFYLLDALQN---AAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSK 224 (263)
T ss_dssp EEECSSTTHHHHHHHHTTSHHHHHHHHHHHHHH---HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCT
T ss_pred EEEeCChhhccHHHHHHccHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 54777 52111111111 11112222333334 488999999999998877665555 333333 3 456667888
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 279 GFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 279 ~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
++++.... +..++.|++.|+.+++++.++++++.|
T Consensus 225 ~~~~~~~l-------~~l~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 225 GGTTHEAV-------EAFRRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp TSHHHHHH-------HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHH-------HHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 88776555 444789999999999999999998765
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-24 Score=197.64 Aligned_cols=267 Identities=15% Similarity=0.143 Sum_probs=184.5
Q ss_pred CCCCCCCCeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCcc--cchhHHhcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 43 DPVCPTNTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTLS--KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 43 ~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~~--~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
......+|||+|||+|+||.+|+..|.++| ++|++|+|+++ +.+.+.+.|+...+++.+++.++|+||+|| ++
T Consensus 16 ~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav-~~ 94 (322)
T 2izz_A 16 ENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAV-KP 94 (322)
T ss_dssp ------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECS-CG
T ss_pred chhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEe-CH
Confidence 333344689999999999999999999999 89999999986 777887779988888999999999999999 68
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--CCcEEec-cCCCCchhhccCceeEEecCC---H
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--NCSAIDA-PVSGGDRGAKTGTLAIFAGGD---E 190 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~~v~~-pv~~~~~~~~~g~~~~~~~g~---~ 190 (351)
+.+++++. ++.+.+.++++||+++++.+. +.+.+.+... ...++.+ |..+.... .+. .++++++ +
T Consensus 95 ~~~~~vl~----~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p~~p~~~~--~g~-~v~~~g~~~~~ 165 (322)
T 2izz_A 95 HIIPFILD----EIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMTNTPVVVR--EGA-TVYATGTHAQV 165 (322)
T ss_dssp GGHHHHHH----HHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEECCGGGGGT--CEE-EEEEECTTCCH
T ss_pred HHHHHHHH----HHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeCCcHHHHc--CCe-EEEEeCCCCCH
Confidence 99999998 888888889999999887653 3566666542 3456655 54443332 333 4555554 7
Q ss_pred HHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhhh---
Q 018694 191 SVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLDL--- 266 (351)
Q Consensus 191 ~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~~--- 266 (351)
+..+.++++|+.+|..+++.+........+.... ..+...+.|++. .+++.|++++.+.+++..+..++..+..
T Consensus 166 ~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~g--pa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~ 243 (322)
T 2izz_A 166 EDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSG--PAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSE 243 (322)
T ss_dssp HHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTH--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8889999999999985555543322232332111 112334555555 4788999999999998877655543321
Q ss_pred hhhhcc-cCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHH
Q 018694 267 HGSRIL-KRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA 328 (351)
Q Consensus 267 ~~~~~~-~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~ 328 (351)
..+.+. +..+.|++++. ..++.+++.|++.++.+++.+.++++++.|.+....+.
T Consensus 244 ~~p~~l~~~v~sp~g~t~-------~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~~~~ 299 (322)
T 2izz_A 244 QHPGQLKDNVSSPGGATI-------HALHVLESGGFRSLLINAVEASCIRTRELQSMADQEQV 299 (322)
T ss_dssp SCHHHHHHHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHhCCCCCcHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 123322 22345665543 35577888999999999999999999987654433333
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=197.43 Aligned_cols=266 Identities=13% Similarity=0.111 Sum_probs=180.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-----------CcccCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-----------AHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-----------~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+.|||+|||+|+||++++..|.++|++|++|+|++++.+.+++.| +..++++++ +.++|+||+|| ++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~v-k~ 90 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAI-PV 90 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECS-CG
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEEC-CH
Confidence 458999999999999999999999999999999999998888876 356678888 88999999999 68
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhc---CCCcEEeccCCCCchhhccCce-eEEecCCHH
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASS---KNCSAIDAPVSGGDRGAKTGTL-AIFAGGDES 191 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~---~~~~~v~~pv~~~~~~~~~g~~-~~~~~g~~~ 191 (351)
+++++++. ++.+ +++++|+++|+. +...+.+.+.+.+ ....+...|........ +.. .+..++++
T Consensus 91 ~~~~~v~~----~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~--g~~~~~~~g~~~- 160 (335)
T 1z82_A 91 QYIREHLL----RLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAK--KLPTAVTLAGEN- 160 (335)
T ss_dssp GGHHHHHT----TCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHT--TCCEEEEEEETT-
T ss_pred HHHHHHHH----HhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhC--CCceEEEEEehh-
Confidence 99999998 7765 788999999863 3222334444332 12344555766544333 332 23333333
Q ss_pred HHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 192 VVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQ-----------------ITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 192 ~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n-----------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
.+.++++|+..+. +++.++.-...|.|++.| .....+..++.|+..++++.|++++++.++
T Consensus 161 -~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l 239 (335)
T 1z82_A 161 -SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGL 239 (335)
T ss_dssp -HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTST
T ss_pred -HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhccc
Confidence 7889999998888 666666544455554444 444556789999999999999999876543
Q ss_pred HhcCC----CCchhhhh--hhhhcccCCCCC------ccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC
Q 018694 254 ISTGA----AGSKSLDL--HGSRILKRDFEP------GFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGE 321 (351)
Q Consensus 254 ~~~~~----~~s~~~~~--~~~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~ 321 (351)
...+. ..++.... ..+.+.++ +.. .+......+|.+.++++++++|+++|+++.++++++.
T Consensus 240 ~~~~~~~~t~~s~~~~n~~~~~~~~~g-~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~------ 312 (335)
T 1z82_A 240 AGIGDLMVTCNSRYSRNRRFGELIARG-FNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYE------ 312 (335)
T ss_dssp TTHHHHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS------
T ss_pred ccccceeeeccCccCcHHHHHHHHhCC-CCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC------
Confidence 10000 00000000 11222221 111 1222345799999999999999999999999988743
Q ss_pred CCCChHHHHHHHH
Q 018694 322 GNLGTQALILALE 334 (351)
Q Consensus 322 ~~~d~~~~~~~~~ 334 (351)
..+..++++.+.
T Consensus 313 -~~~~~~~~~~l~ 324 (335)
T 1z82_A 313 -GKPPLQSMRDLM 324 (335)
T ss_dssp -CCCHHHHHHHHH
T ss_pred -CCCHHHHHHHHH
Confidence 245666666554
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=186.99 Aligned_cols=249 Identities=15% Similarity=0.161 Sum_probs=183.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.||||+|||+|.||..++..|.+.|++|.+|||++++.+.+.+. |+..+.++++++.++|+||+|+ ++..+++++.
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v-~~~~~~~v~~-- 78 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGI-KPQLFETVLK-- 78 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECS-CGGGHHHHHT--
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEe-CcHhHHHHHH--
Confidence 46899999999999999999999999999999999988888765 8888889999999999999999 4888888887
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhC
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMG 204 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g 204 (351)
++. +++++++++++... +.+.+.+. .+..+++ ++.+.+.....|...++.++ +++..+.++++|+.+|
T Consensus 79 --~l~----~~~~vv~~~~~~~~--~~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G 148 (259)
T 2ahr_A 79 --PLH----FKQPIISMAAGISL--QRLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG 148 (259)
T ss_dssp --TSC----CCSCEEECCTTCCH--HHHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE
T ss_pred --Hhc----cCCEEEEeCCCCCH--HHHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC
Confidence 653 77899999765442 34555554 3556766 34444444445555555665 8889999999999999
Q ss_pred ceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCch-hhhhhh--hhcc-cCCCCCc
Q 018694 205 KVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSK-SLDLHG--SRIL-KRDFEPG 279 (351)
Q Consensus 205 ~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~--~~~~-~~~~~~~ 279 (351)
.++++++.......++..+... +...+.+++. .+++.|++.+++.+++..+..+++ ++..+. +.+. +..++|+
T Consensus 149 ~~~~~~~~~~d~~~al~g~~~~--~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~ 226 (259)
T 2ahr_A 149 STFDISEKDFDTFTALAGSSPA--YIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPG 226 (259)
T ss_dssp EEEECCGGGHHHHHHHHTTHHH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTT
T ss_pred CEEEecHHHccHHHHHhccHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCC
Confidence 8888887666666665422211 1222334433 588999999999999988776665 333332 4444 3446788
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 280 FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 280 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
+++....||+ ++.|++..+.+++.+.++++.+
T Consensus 227 ~~~~~~~~~l-------~~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 227 GTTIAGLMEL-------ERLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp SHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH-------HHCChHHHHHHHHHHHHHHHhc
Confidence 8887655554 5789999999999998888765
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=201.10 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=179.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+|+||.++|..|.++|++|++|+|++++++.+.+.+ +...+++++++.++|+||+|| +
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav-~ 94 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI-P 94 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC-C
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECC-C
Confidence 3999999999999999999999999999999998888877653 344567888888999999999 6
Q ss_pred hhHHHHHhhCCCCC----cccCCCC-CcEEEecCCCC-hhHHHHHHHHHhcC-C---CcEEeccCCCCchhhccCceeEE
Q 018694 116 PSDVRHVLLHPSSG----ALSGLRP-GGIIVDMTTSE-PSLASELSAAASSK-N---CSAIDAPVSGGDRGAKTGTLAIF 185 (351)
Q Consensus 116 ~~~~~~v~~~~~~~----i~~~l~~-~~~ii~~s~~~-~~~~~~l~~~~~~~-~---~~~v~~pv~~~~~~~~~g~~~~~ 185 (351)
+.++++++. + +.+.+.+ +++||+++++. +...+.+.+.+.+. + ..+...|..............++
T Consensus 95 ~~~~~~v~~----~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~ 170 (366)
T 1evy_A 95 TQFLRGFFE----KSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSI 170 (366)
T ss_dssp HHHHHHHHH----HHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred hHHHHHHHH----HhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEE
Confidence 789999998 7 7777777 89999999753 32223344444322 2 23455566654333323333455
Q ss_pred ecCCHHHHHHHHHHHHhh--Cc-eEEcCCccHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC
Q 018694 186 AGGDESVVQKLNPLFALM--GK-VNYMGGSGKGQFAKLA-----------------NQITIATTMVGLVEGMVYAHKAGL 245 (351)
Q Consensus 186 ~~g~~~~~~~v~~ll~~~--g~-~~~~g~~g~a~~~kl~-----------------~n~~~~~~~~~~~Ea~~la~~~Gi 245 (351)
.+++++..+.++++|+.. +. +++.++.....|.|++ +|........++.|+..++++.|+
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi 250 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGG 250 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 566888899999999998 76 6666765555565554 444555678999999999999999
Q ss_pred CHHHHHHHHhcCC----CCchhhhh--hhhhcccCC-CC----CccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018694 246 NVELFLNAISTGA----AGSKSLDL--HGSRILKRD-FE----PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYL 314 (351)
Q Consensus 246 ~~~~~~~~~~~~~----~~s~~~~~--~~~~~~~~~-~~----~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~ 314 (351)
+++++.++...+. ..+..... ..+.+.++. +. ..+......+|.+.++++++++|+++|+++.++++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~ 330 (366)
T 1evy_A 251 DGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY 330 (366)
T ss_dssp CCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9865533200000 00011010 112222211 00 0112224568999999999999999999999998876
Q ss_pred H
Q 018694 315 S 315 (351)
Q Consensus 315 ~ 315 (351)
.
T Consensus 331 ~ 331 (366)
T 1evy_A 331 K 331 (366)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=196.68 Aligned_cols=259 Identities=13% Similarity=0.106 Sum_probs=182.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC-------CeEEEEeCCcc-----cchhHHhc--------------CCcccCCHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG-------YTVTVFNRTLS-----KAQPLLDI--------------GAHLADSPHS 101 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~~~~ 101 (351)
+||||+|||+|+||+++|..|+++| ++|++|+|+++ +.+.+++. ++..++++++
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 4679999999999999999999999 99999999988 77776653 2345667888
Q ss_pred hhcCCCEEEEecCChhHHHHHhhCCCCCccc----CCCCCcEEEecCCCChh-------HHHHHHHHHhcCCCcEEeccC
Q 018694 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALS----GLRPGGIIVDMTTSEPS-------LASELSAAASSKNCSAIDAPV 170 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~----~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~~~~~~v~~pv 170 (351)
++.++|+||+|| +++.+++++. ++.+ .+.++++||+++++... ..+.+.+.+. ....+...|.
T Consensus 100 a~~~aDvVilav-~~~~~~~vl~----~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~ 173 (375)
T 1yj8_A 100 VINDADLLIFIV-PCQYLESVLA----SIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN-IPCSALSGAN 173 (375)
T ss_dssp HHTTCSEEEECC-CHHHHHHHHH----HHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS-SCEEEEECSC
T ss_pred HHcCCCEEEEcC-CHHHHHHHHH----HHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC-CCEEEEeCCc
Confidence 888999999999 7899999998 8888 88889999999986432 1222333222 2334455676
Q ss_pred CCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHH-----------------HHHHHHHHHH
Q 018694 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAN-----------------QITIATTMVG 232 (351)
Q Consensus 171 ~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~-----------------n~~~~~~~~~ 232 (351)
.............++.+++++..+.++++|+..+. +++.++.....|.|++. |.....+..+
T Consensus 174 ~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~ 253 (375)
T 1yj8_A 174 IAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNG 253 (375)
T ss_dssp CHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Confidence 65444433334445566788889999999999887 77777766666666654 4455668899
Q ss_pred HHHHHHHHHHc--CCCHHHHHHH------HhcCCCCchhhhhhhhhccc-CC-CC--C------ccchhhHHHHHHHHHH
Q 018694 233 LVEGMVYAHKA--GLNVELFLNA------ISTGAAGSKSLDLHGSRILK-RD-FE--P------GFFVNHFVKDLGICLK 294 (351)
Q Consensus 233 ~~Ea~~la~~~--Gi~~~~~~~~------~~~~~~~s~~~~~~~~~~~~-~~-~~--~------~~~~~~~~kd~~~~~~ 294 (351)
+.|+..++++. |++++++.++ +..... +... ...+.+.+ ++ +. . ++...+..++.+.+.+
T Consensus 254 ~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~-~~~~-~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~ 331 (375)
T 1yj8_A 254 INEMILFGKVFFQKFNENILLESCGFADIITSFLA-GRNA-KCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYH 331 (375)
T ss_dssp HHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS-SSHH-HHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcchhhccccccceeEeeeC-CccH-HHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHH
Confidence 99999999999 6987665432 111111 0000 01122222 10 11 0 0234456889999999
Q ss_pred HHHhcCC--CCcHHHHHHHHHH
Q 018694 295 ECQNMGL--ALPGLALAQQLYL 314 (351)
Q Consensus 295 ~a~~~gv--~~p~~~~~~~l~~ 314 (351)
+++++|+ ++|+++.+++++.
T Consensus 332 ~a~~~gv~~~~P~~~~v~~~~~ 353 (375)
T 1yj8_A 332 MIKEKNMTNEFPLFTVLHKISF 353 (375)
T ss_dssp HHHHTTCGGGCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHh
Confidence 9999999 9999999988875
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=190.20 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=186.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC---eEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+|||+|||+|+||.+++..|.++|+ +|++|||++++.+.+.+. |+....+..+++.++|+||+|| +++.+++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav-~p~~~~~vl~ 81 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV-KPHQIKMVCE 81 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS-CGGGHHHHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe-CHHHHHHHHH
Confidence 5899999999999999999999999 999999999999998886 8888889999999999999999 7899999999
Q ss_pred CCCCCcccC-CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC---CHHHHHHHHHH
Q 018694 125 HPSSGALSG-LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPL 199 (351)
Q Consensus 125 ~~~~~i~~~-l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~l 199 (351)
++.+. +.++++||+++++.+ ...+.+.+. .+..++.. |+.+...+ .+. ..++.+ +++..+.++++
T Consensus 82 ----~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~-~~~~vvr~mPn~p~~v~--~g~-~~l~~~~~~~~~~~~~v~~l 151 (280)
T 3tri_A 82 ----ELKDILSETKILVISLAVGVT--TPLIEKWLG-KASRIVRAMPNTPSSVR--AGA-TGLFANETVDKDQKNLAESI 151 (280)
T ss_dssp ----HHHHHHHTTTCEEEECCTTCC--HHHHHHHHT-CCSSEEEEECCGGGGGT--CEE-EEEECCTTSCHHHHHHHHHH
T ss_pred ----HHHhhccCCCeEEEEecCCCC--HHHHHHHcC-CCCeEEEEecCChHHhc--Ccc-EEEEeCCCCCHHHHHHHHHH
Confidence 88887 778889999888765 356777665 34566665 66544332 233 333333 68899999999
Q ss_pred HHhhCceEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhhh----hhhhccc
Q 018694 200 FALMGKVNYMGG-SGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLDL----HGSRILK 273 (351)
Q Consensus 200 l~~~g~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~~----~~~~~~~ 273 (351)
|+.+|.++++.+ ........+.... -.+...+.|++. .+.+.|++++++.+++..+..++..+-. +...+.+
T Consensus 152 ~~~iG~~~~v~~E~~~d~~talsgsg--pa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~ 229 (280)
T 3tri_A 152 MRAVGLVIWVSSEDQIEKIAALSGSG--PAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQ 229 (280)
T ss_dssp HGGGEEEEECSSHHHHHHHHHHTTSH--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHCCCeEEECCHHHhhHHHHHhccH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999777743 2111111111111 114455566665 5789999999999998887655444321 1223334
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 274 RDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 274 ~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
...+||.++.. .++..++.|++..+.+++.+..+++++.+
T Consensus 230 ~v~spgGtT~~-------~l~~le~~g~~~~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 230 FVTSPGGTTEQ-------AIKVLESGNLRELFIKALTAAVNRAKELS 269 (280)
T ss_dssp HHCCTTSHHHH-------HHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 45667666543 56788999999999999999999998765
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=192.73 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=180.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeC--CcccchhHHhcCC-----------cccC--CHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR--TLSKAQPLLDIGA-----------HLAD--SPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr--~~~~~~~~~~~g~-----------~~~~--~~~~~~~~~DiIi~~vp 114 (351)
|||+|||+|.||..+|..|.++|++|++|+| ++++.+.+.+.|. ...+ ++.+.+.++|+||+|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v- 79 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV- 79 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS-
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcC-
Confidence 6899999999999999999999999999999 9888888877664 3344 6677788999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCC----hhHHHHHHHHHhcC-CC----cEEeccCCCCchhhccCceeEE
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSE----PSLASELSAAASSK-NC----SAIDAPVSGGDRGAKTGTLAIF 185 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~----~~~~~~l~~~~~~~-~~----~~v~~pv~~~~~~~~~g~~~~~ 185 (351)
++..+++++. ++.+ +.++++||+++|+. +++.+.+.+.+.+. +. .+...|..............++
T Consensus 80 ~~~~~~~v~~----~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 80 STDGVLPVMS----RILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp CGGGHHHHHH----HHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred ChHHHHHHHH----HHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEE
Confidence 7778999998 8888 88899999999875 24445666666542 32 2233354432222111123344
Q ss_pred ecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHH-----------------HHH-----HHHHHHHHHHHHHHHHHHHHH
Q 018694 186 AGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFA-----------------KLA-----NQITIATTMVGLVEGMVYAHK 242 (351)
Q Consensus 186 ~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~-----------------kl~-----~n~~~~~~~~~~~Ea~~la~~ 242 (351)
.+.+++..+.++++|+..+. +++.++.....|. |+. .|.....+..++.|+..++++
T Consensus 155 ~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~ 234 (335)
T 1txg_A 155 SSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEI 234 (335)
T ss_dssp ECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55578888999999998887 7777777666665 555 666666778899999999999
Q ss_pred cCCCHHHHH------HHHhcCCCCchhhhhhhhhcccCCCCC-------c--c-chhhHHHHHHHHHHHHHhcCCCCcHH
Q 018694 243 AGLNVELFL------NAISTGAAGSKSLDLHGSRILKRDFEP-------G--F-FVNHFVKDLGICLKECQNMGLALPGL 306 (351)
Q Consensus 243 ~Gi~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~-------~--~-~~~~~~kd~~~~~~~a~~~gv~~p~~ 306 (351)
.|++++++. +.+..... +... .....+ ...+.. + + ...+..+|.+.++++++++|+++|++
T Consensus 235 ~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~ 311 (335)
T 1txg_A 235 LGGDRETAFGLSGFGDLIATFRG-GRNG-MLGELL-GKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLL 311 (335)
T ss_dssp HTSCGGGGGSTTTHHHHHHTTTC-HHHH-HHHHHH-HTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HCCCcchhhcccchhheeecccc-CccH-HHHHHH-hCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHH
Confidence 999987654 33332221 1110 011111 111110 0 0 12234589999999999999999999
Q ss_pred HHHHHHHHH
Q 018694 307 ALAQQLYLS 315 (351)
Q Consensus 307 ~~~~~l~~~ 315 (351)
+.++++++.
T Consensus 312 ~~~~~~~~~ 320 (335)
T 1txg_A 312 DSIYRVLYE 320 (335)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999988764
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=192.81 Aligned_cols=263 Identities=17% Similarity=0.156 Sum_probs=198.0
Q ss_pred CCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------------CCcccCCHHH
Q 018694 42 TDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------------GAHLADSPHS 101 (351)
Q Consensus 42 ~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~~ 101 (351)
..|..+.|.+|+|||+|.+|..+|..|++.||+|+++|.++++++.+++. .+.++++.++
T Consensus 14 ~~p~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ 93 (444)
T 3vtf_A 14 LVPRGSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEE 93 (444)
T ss_dssp CCCTTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHH
T ss_pred cCCCCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHH
Confidence 35555678899999999999999999999999999999999988776432 2456778889
Q ss_pred hhcCCCEEEEecCChh---------HHHHHhhCCCCCcccCCC---CCcEEEecCCCChhHHHHHHHHH-hcC----CCc
Q 018694 102 LASQSDVVFSIVGYPS---------DVRHVLLHPSSGALSGLR---PGGIIVDMTTSEPSLASELSAAA-SSK----NCS 164 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~---------~~~~v~~~~~~~i~~~l~---~~~~ii~~s~~~~~~~~~l~~~~-~~~----~~~ 164 (351)
++.++|++|+|||.|. .++++.+ .+.+++. ++++||.-||..|++++++...+ .+. ...
T Consensus 94 ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~----~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~ 169 (444)
T 3vtf_A 94 AVAATDATFIAVGTPPAPDGSADLRYVEAAAR----AVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFS 169 (444)
T ss_dssp HHHTSSEEEECCCCCBCTTSSBCCHHHHHHHH----HHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCE
T ss_pred HHhcCCceEEEecCCCCCCCCCCcHHHHHHHH----HHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCce
Confidence 8999999999997652 4666666 6666653 67899999999999988765433 221 234
Q ss_pred EEeccCCCCch---h-hccCceeEEecCCHHHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 165 AIDAPVSGGDR---G-AKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYA 240 (351)
Q Consensus 165 ~v~~pv~~~~~---~-~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la 240 (351)
+..+|-+-.+- . .....-.++.+.+++..+.+.++++.+.....+.+...|...|++.|.+....+++++|...+|
T Consensus 170 v~~~PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ic 249 (444)
T 3vtf_A 170 VASNPEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFANEVGLLA 249 (444)
T ss_dssp EEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCcccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667553321 1 1112223334457778888888888877744456778999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 241 HKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 241 ~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
++.|++..++.+.+....... .++++ ..+|+.-.++.||..++...++++|++.++++++.+.-+...
T Consensus 250 e~~GiDv~eV~~a~~~d~rig-------~~~l~--PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~~ 317 (444)
T 3vtf_A 250 KRLGVDTYRVFEAVGLDKRIG-------RHYFG--AGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYMP 317 (444)
T ss_dssp HHTTCCHHHHHHHHHTSTTSC-------STTCC--CSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhccCCCCC-------CCCCC--CCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHHH
Confidence 999999999999987543211 11111 124555677899999999999999999999988877666543
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=185.06 Aligned_cols=255 Identities=15% Similarity=0.125 Sum_probs=173.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--------------cCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--------------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--------------~~~~~~~~~~~DiIi~~vp 114 (351)
+|||+|||+|+||+++|..|.++|++|++|+|++ .+.+++.|+.. +++.++ +.++|+||+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilav- 77 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGL- 77 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECC-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEec-
Confidence 4899999999999999999999999999999986 36676665422 244544 57899999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC----CcEEeccCCCCchhhccCceeEEec---
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN----CSAIDAPVSGGDRGAKTGTLAIFAG--- 187 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~----~~~v~~pv~~~~~~~~~g~~~~~~~--- 187 (351)
|++++++++. .+.+.+.++++||++.||. +..+.+.+.++... +.+..+-..+.......+.-.+..+
T Consensus 78 k~~~~~~~l~----~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~ 152 (312)
T 3hn2_A 78 KTFANSRYEE----LIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFL 152 (312)
T ss_dssp CGGGGGGHHH----HHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESS
T ss_pred CCCCcHHHHH----HHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCC
Confidence 9999999999 8989999999999999984 33456777765321 1222221221111111111122222
Q ss_pred -CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC
Q 018694 188 -GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAG 244 (351)
Q Consensus 188 -g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~G 244 (351)
.+.+..+.+.++|+..+. +.+..+.-...|.|++.|...+. +..++.|+..++++.|
T Consensus 153 ~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G 232 (312)
T 3hn2_A 153 PRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQG 232 (312)
T ss_dssp CCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcC
Confidence 245667888999998888 66677799999999999987553 5577889999999999
Q ss_pred --CCHH-----HHHHHHhcCCC-CchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 245 --LNVE-----LFLNAISTGAA-GSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 245 --i~~~-----~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
++.+ .+.+....... .+.++ ..+.++.. .+++.+. ++++++++++|+++|+++.++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~sSM~----qD~~~gr~---tEid~i~---G~vv~~a~~~gv~~P~~~~l~~ll~~~ 302 (312)
T 3hn2_A 233 LATFIADGYVDDMLEFTDAMGEYKPSME----IDREEGRP---LEIAAIF---RTPLAYGAREGIAMPRVEMLATLLEQA 302 (312)
T ss_dssp CSSCCCTTHHHHHHHHHTTSCSCCCHHH----HHHHTTCC---CCHHHHT---HHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHhcCCCCCchHH----HHHHhCCC---ccHHHHh---hHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6532 22222222211 11111 11222221 1344333 799999999999999999999999988
Q ss_pred HHcCCC
Q 018694 317 KAHGEG 322 (351)
Q Consensus 317 ~~~g~~ 322 (351)
...|+-
T Consensus 303 ~~~~~~ 308 (312)
T 3hn2_A 303 TGEGHH 308 (312)
T ss_dssp TTC---
T ss_pred Hhcccc
Confidence 877753
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-23 Score=191.55 Aligned_cols=259 Identities=10% Similarity=0.049 Sum_probs=180.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-------CeEEEEeCCcc-----cchhHHhc--------------CCcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-------YTVTVFNRTLS-----KAQPLLDI--------------GAHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~~~~~ 102 (351)
+|||+|||+|+||.++|..|+++| ++|++|+|+++ +.+.+.+. ++...++++++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 479999999999999999999999 99999999988 66666542 13345678888
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh---h----HHHHHHHHHhcCCCcEEeccCCCCch
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP---S----LASELSAAASSKNCSAIDAPVSGGDR 175 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~---~----~~~~l~~~~~~~~~~~v~~pv~~~~~ 175 (351)
+.++|+||+|| +++.+++++. ++.+.+.++++||+++++.. . ..+.+.+.+. ....+...|......
T Consensus 88 ~~~aD~Vilav-~~~~~~~v~~----~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a~~v 161 (354)
T 1x0v_A 88 AEDADILIFVV-PHQFIGKICD----QLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANIASEV 161 (354)
T ss_dssp HTTCSEEEECC-CGGGHHHHHH----HHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCCHHHH
T ss_pred HcCCCEEEEeC-CHHHHHHHHH----HHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCcHHHH
Confidence 88999999999 6788999998 88888889999999998643 1 1223333332 223445556654433
Q ss_pred hhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Q 018694 176 GAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLA-----------------NQITIATTMVGLVEGM 237 (351)
Q Consensus 176 ~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~-----------------~n~~~~~~~~~~~Ea~ 237 (351)
.........+.+++++..+.++++|+..+. +++.++.....|.|++ .|.....+..++.|+.
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~ 241 (354)
T 1x0v_A 162 ADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMI 241 (354)
T ss_dssp HTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 322223344556688888999999999888 6667776666777766 4555566889999999
Q ss_pred HHHHHcCC---CHHHHHH------HHhcCCCCchhhhhhhhhcccCCCCC--------ccchhhHHHHHHHHHHHHHhcC
Q 018694 238 VYAHKAGL---NVELFLN------AISTGAAGSKSLDLHGSRILKRDFEP--------GFFVNHFVKDLGICLKECQNMG 300 (351)
Q Consensus 238 ~la~~~Gi---~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~kd~~~~~~~a~~~g 300 (351)
.++++.|+ +++++.+ .+..... +... ...+.+.++.+.. .+...+..++.+.++++++++|
T Consensus 242 ~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~g 319 (354)
T 1x0v_A 242 AFAKLFCSGPVSSATFLESCGVADLITTCYG-GRNR-KVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKG 319 (354)
T ss_dssp HHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHHH-HHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcccccccchHHHHHHhhcc-cccH-HHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhC
Confidence 99999999 7765432 1111000 1110 1122222101110 1233445789999999999999
Q ss_pred C--CCcHHHHHHHHHHH
Q 018694 301 L--ALPGLALAQQLYLS 315 (351)
Q Consensus 301 v--~~p~~~~~~~l~~~ 315 (351)
+ ++|+++.+++++..
T Consensus 320 v~~~~P~~~~v~~~~~~ 336 (354)
T 1x0v_A 320 LVDKFPLFMAVYKVCYE 336 (354)
T ss_dssp CGGGSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhC
Confidence 9 99999999988753
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=177.53 Aligned_cols=224 Identities=15% Similarity=0.208 Sum_probs=153.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
+|||+|||+|+||.+++..|.++|+ +|++|||++++.+.+.+. |+....++.+++.++|+||+|+ +++.+++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav-~~~~~~~v~ 80 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSI-KPDLYASII 80 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECS-CTTTHHHHC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEe-CHHHHHHHH
Confidence 5899999999999999999999998 999999999999888764 8888889999999999999999 889999999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEe--cCCHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFA--GGDESVVQKLNPLF 200 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~--~g~~~~~~~v~~ll 200 (351)
. ++.+.+.++++||+++++.. .+.+.+.+. .+..++.. |..+... ..|...++. +++++..+.++++|
T Consensus 81 ~----~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~-~~~~~v~~~p~~p~~~--~~g~~~~~~~~~~~~~~~~~~~~l~ 151 (247)
T 3gt0_A 81 N----EIKEIIKNDAIIVTIAAGKS--IESTENAFN-KKVKVVRVMPNTPALV--GEGMSALCPNEMVTEKDLEDVLNIF 151 (247)
T ss_dssp -------CCSSCTTCEEEECSCCSC--HHHHHHHHC-SCCEEEEEECCGGGGG--TCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred H----HHHhhcCCCCEEEEecCCCC--HHHHHHHhC-CCCcEEEEeCChHHHH--cCceEEEEeCCCCCHHHHHHHHHHH
Confidence 8 88888889999998887755 345666554 34455544 4332222 224434444 25889999999999
Q ss_pred HhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhcCCCCchhhhh----hhhhcccCC
Q 018694 201 ALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVY-AHKAGLNVELFLNAISTGAAGSKSLDL----HGSRILKRD 275 (351)
Q Consensus 201 ~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~ 275 (351)
+.+|.++++++........+.... ..+...+.|++.. +++.|++++++.+++..+..+++.+-. +...+.+..
T Consensus 152 ~~~G~~~~~~e~~~d~~~a~~g~g--pa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v 229 (247)
T 3gt0_A 152 NSFGQTEIVSEKLMDVVTSVSGSS--PAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMV 229 (247)
T ss_dssp GGGEEEEECCGGGHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred HhCCCEEEeCHHHccHHHHHhccH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence 999997777653332222222222 2356677888874 899999999999999888766665431 233444555
Q ss_pred CCCccchhh
Q 018694 276 FEPGFFVNH 284 (351)
Q Consensus 276 ~~~~~~~~~ 284 (351)
.+||.+...
T Consensus 230 ~spgG~t~~ 238 (247)
T 3gt0_A 230 CSPGGTTIE 238 (247)
T ss_dssp ---------
T ss_pred CCCCchHHH
Confidence 667766543
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=179.22 Aligned_cols=247 Identities=16% Similarity=0.238 Sum_probs=174.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc-------------ccCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH-------------LADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~~~~~~~DiIi~~vp 114 (351)
.+|||+|||+|+||+++|..|+++|++|++| +++++++.+++.|+. ..++.++ +.++|+||+||
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav- 94 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV- 94 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC-
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc-
Confidence 3589999999999999999999999999999 888888888876533 2345544 57899999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC----cEE----eccCCCCchhhccCceeEEe
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC----SAI----DAPVSGGDRGAKTGTLAIFA 186 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~----~~v----~~pv~~~~~~~~~g~~~~~~ 186 (351)
|+.++++++. ++.+.+.++++||+++|+.. ..+.+.+.++ ..+ .+. ..|......+ .+. +..
T Consensus 95 k~~~~~~~l~----~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~-~~vl~g~~~~~a~~~gP~~~~~~~--~g~--~~i 164 (318)
T 3hwr_A 95 KSTDTQSAAL----AMKPALAKSALVLSLQNGVE-NADTLRSLLE-QEVAAAVVYVATEMAGPGHVRHHG--RGE--LVI 164 (318)
T ss_dssp CGGGHHHHHH----HHTTTSCTTCEEEEECSSSS-HHHHHHHHCC-SEEEEEEEEEEEEEEETTEEEEEE--EEE--EEE
T ss_pred ccccHHHHHH----HHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC-CcEEEEEEEEeEEEcCCeEEEEcC--Cce--EEE
Confidence 7789999999 89999999999999999843 3456777664 211 111 1233222221 222 223
Q ss_pred cCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC
Q 018694 187 GGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAG 244 (351)
Q Consensus 187 ~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~G 244 (351)
+. .+..+.+.++|+..+. +.+..++-...|.|++.|...+. +..++.|+..++++.|
T Consensus 165 g~-~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G 243 (318)
T 3hwr_A 165 EP-TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEG 243 (318)
T ss_dssp CC-CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cC-CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcC
Confidence 33 3445788899998888 77777789999999999986654 4577889999999999
Q ss_pred CCHH-----HHHHHHhcCC-CCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 245 LNVE-----LFLNAISTGA-AGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 245 i~~~-----~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
++.+ .+.+...... ..+.|+ ..+.++... +++.+. +++++.++++|+++|+++.++++++....
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~sSM~----qD~~~gr~t---Eid~i~---G~vv~~a~~~gv~tP~~~~l~~ll~~~e~ 313 (318)
T 3hwr_A 244 VKLPDDVALAIRRIAETMPRQSSSTA----QDLARGKRS---EIDHLN---GLIVRRGDALGIPVPANRVLHALVRLIED 313 (318)
T ss_dssp CCCCTTHHHHHHHHHHHSTTCCCHHH----HHHHTTCCC---SGGGTH---HHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhcCCCCcHHH----HHHHcCChh---HHHHHH---HHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence 7752 2233333222 111111 112222222 444444 88999999999999999999999987654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=183.03 Aligned_cols=249 Identities=16% Similarity=0.119 Sum_probs=174.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC---------------cccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA---------------HLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~---------------~~~~~~~~~~~~~DiIi~~v 113 (351)
+|||+|||+|+||+.+|..|.++|++|++|+|++ .+.+++.|+ ..+++++++..++|+||+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilav 79 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCI 79 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEec
Confidence 4899999999999999999999999999999986 366665543 23356666666899999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC-------CchhhccCceeEEe
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG-------GDRGAKTGTLAIFA 186 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~-------~~~~~~~g~~~~~~ 186 (351)
|+.++++++. .+.+.+.++++||+++|+.. ..+.+.+.++.. .++.++++. +.+... +...+..
T Consensus 80 -K~~~~~~~l~----~l~~~l~~~t~Iv~~~nGi~-~~~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~-~~~~~~i 150 (320)
T 3i83_A 80 -KVVEGADRVG----LLRDAVAPDTGIVLISNGID-IEPEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQ-AYGRLML 150 (320)
T ss_dssp -CCCTTCCHHH----HHTTSCCTTCEEEEECSSSS-CSHHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEE-EEEEEEE
T ss_pred -CCCChHHHHH----HHHhhcCCCCEEEEeCCCCC-hHHHHHHHCCCC--cEEEEEEEeceEEcCCCEEEEC-CCCEEEE
Confidence 8888888998 88888999999999999843 335677766543 455544332 221111 1112223
Q ss_pred c----CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q 018694 187 G----GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT--------------------TMVGLVEGMVYAH 241 (351)
Q Consensus 187 ~----g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~--------------------~~~~~~Ea~~la~ 241 (351)
| .+.+..+.+.++|+..+. +.+..++-...|.|++.|...+. +..++.|+..+++
T Consensus 151 g~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~ 230 (320)
T 3i83_A 151 GNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAA 230 (320)
T ss_dssp EESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 2 345677889999998887 77777899999999999875442 4567889999999
Q ss_pred HcCCCHH-----HHHHHHhcCCC-CchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018694 242 KAGLNVE-----LFLNAISTGAA-GSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLS 315 (351)
Q Consensus 242 ~~Gi~~~-----~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~ 315 (351)
+.|++.+ .+.+....... .+.++ ..+.++.. .+++.+. ++++++++++|+++|+++.++++++.
T Consensus 231 a~G~~l~~~~~~~~~~~~~~~~~~~sSM~----qD~~~gr~---tEid~i~---G~vv~~a~~~gv~~P~~~~l~~~l~~ 300 (320)
T 3i83_A 231 ANGHPLPEDIVEKNVASTYKMPPYKTSML----VDFEAGQP---METEVIL---GNAVRAGRRTRVAIPHLESVYALMKL 300 (320)
T ss_dssp HTTCCCCTTHHHHHHHHHHHSCCCCCHHH----HHHHHTCC---CCHHHHT---HHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HcCCCCChHHHHHHHHHHhcCCCCCCcHH----HHHHhCCC---chHHHHc---cHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9998753 22222222221 11111 11222221 1344333 78999999999999999999999987
Q ss_pred HHH
Q 018694 316 LKA 318 (351)
Q Consensus 316 ~~~ 318 (351)
...
T Consensus 301 ~e~ 303 (320)
T 3i83_A 301 LEL 303 (320)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=182.72 Aligned_cols=251 Identities=18% Similarity=0.238 Sum_probs=172.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------------cCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------------ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------------~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|+||+++|..|+++|++|++|+|+ ++.+.+++.|+.. .+++++ +.++|+||+|| |
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilav-k 79 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAV-K 79 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECC-C
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeC-C
Confidence 589999999999999999999999999999996 6677777766532 356666 57899999999 8
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh------------------hHHHHHHHHHhcCCCcEEec------cCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP------------------SLASELSAAASSKNCSAIDA------PVS 171 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~------------------~~~~~l~~~~~~~~~~~v~~------pv~ 171 (351)
+.++++++. ++.+.+.++++||+++|+.+ +..+.+.+.++.. .++.+ ...
T Consensus 80 ~~~~~~~~~----~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~--~v~~gv~~~~a~~~ 153 (335)
T 3ghy_A 80 APALESVAA----GIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTR--HVLGCVVHLTCATV 153 (335)
T ss_dssp HHHHHHHHG----GGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGG--GEEEEEECCCEEES
T ss_pred chhHHHHHH----HHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcc--cEEEEEEEEEEEEc
Confidence 889999999 89999999999999999942 3344566666532 22221 111
Q ss_pred CCchhhccCceeEEec----CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHH-------------------
Q 018694 172 GGDRGAKTGTLAIFAG----GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIA------------------- 227 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~----g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~------------------- 227 (351)
+.......+.-.+..| .+.+..+.+.++|+..+. +.+..++-...|.|++.|...+
T Consensus 154 ~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~ 233 (335)
T 3ghy_A 154 SPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLV 233 (335)
T ss_dssp STTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHH
T ss_pred CCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHH
Confidence 1111111111122233 245667888999998888 6677778899999988665433
Q ss_pred --HHHHHHHHHHHHHHHcCCCHH----HHHHHHhcCCCCchhhhhhhhhcccCCCCCcc---chhhHHHHHHHHHHHHHh
Q 018694 228 --TTMVGLVEGMVYAHKAGLNVE----LFLNAISTGAAGSKSLDLHGSRILKRDFEPGF---FVNHFVKDLGICLKECQN 298 (351)
Q Consensus 228 --~~~~~~~Ea~~la~~~Gi~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~kd~~~~~~~a~~ 298 (351)
.+..++.|+..++++.|++++ ...+....... ..+.|. .|+..|. +++.+ .+++++++++
T Consensus 234 ~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~-------~~sSM~-qD~~~gr~~tEid~i---~G~vv~~a~~ 302 (335)
T 3ghy_A 234 SAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGA-------FKTSML-QDAEAGRGPLEIDAL---VASVREIGLH 302 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCS-------CCCTTT-C-----CCCCCHHHH---THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCC-------CCcHHH-HHHHcCCCCchHHHH---hhHHHHHHHH
Confidence 366788999999999997753 22333322211 111122 2333333 34443 3899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHc
Q 018694 299 MGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 299 ~gv~~p~~~~~~~l~~~~~~~ 319 (351)
+|+++|+++.++++++...+.
T Consensus 303 ~gv~~P~~~~l~~li~~~e~~ 323 (335)
T 3ghy_A 303 VGVPTPQIDTLLGLVRLHAQT 323 (335)
T ss_dssp HTCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999987653
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-23 Score=182.17 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=138.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--------------chhHHhc-CCcccCCHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--------------AQPLLDI-GAHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--------------~~~~~~~-g~~~~~~~~~~~~~~DiIi~~ 112 (351)
..|||+|||+|.||.++|..|.++|++|++|||++++ .+.+.+. +.....++.+++.++|+||+|
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVila 97 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNA 97 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEc
Confidence 3589999999999999999999999999999999886 4444433 455567888999999999999
Q ss_pred cCChhHHHHHhhCCCCCc-ccCCCCCcEEEecCCCC-----------h----hHHHHHHHHHhc----CCCcEEeccCCC
Q 018694 113 VGYPSDVRHVLLHPSSGA-LSGLRPGGIIVDMTTSE-----------P----SLASELSAAASS----KNCSAIDAPVSG 172 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~-----------~----~~~~~l~~~~~~----~~~~~v~~pv~~ 172 (351)
| ++....+++. ++ .+.+ ++++||+++++. | ...+.+.+.++. +++.++++|+.+
T Consensus 98 v-p~~~~~~~~~----~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~ 171 (245)
T 3dtt_A 98 T-EGASSIAALT----AAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMV 171 (245)
T ss_dssp S-CGGGHHHHHH----HHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHH
T ss_pred c-CcHHHHHHHH----Hhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhc
Confidence 9 6666667777 66 5555 899999999542 2 234555555542 256677778888
Q ss_pred CchhhccCceeEEecC-CHHHHHHHHHHHHhhCc--eEEcCCccHHHHHHHHHHHHHHHH
Q 018694 173 GDRGAKTGTLAIFAGG-DESVVQKLNPLFALMGK--VNYMGGSGKGQFAKLANQITIATT 229 (351)
Q Consensus 173 ~~~~~~~g~~~~~~~g-~~~~~~~v~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~ 229 (351)
++..+..+.+.++++| +++..+.++++|+.+|. ++++|+.|.+..+|+++|++....
T Consensus 172 ~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 172 DPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp CGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred CccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 8776666666666655 68999999999999996 689999999999999999988764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=175.91 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=155.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
+|||+|||+|.||..++..|.+.|++ |.+|||++++.+.+.+. |+....++++++.++|+||+|+ ++..+++++.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av-~~~~~~~v~~-- 86 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSL-KDSAFAELLQ-- 86 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECC-CHHHHHHHHH--
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEec-CHHHHHHHHH--
Confidence 47999999999999999999999998 89999999998888776 8888888989889999999999 5567788988
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.++++|++++++.+.. .+.+.+...+..+..+|+.+.......+...++.+++++..+.++++|+.+|.
T Consensus 87 --~l~~~~~~~~ivv~~s~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~g~~ 162 (266)
T 3d1l_A 87 --GIVEGKREEALMVHTAGSIPMN--VWEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNR 162 (266)
T ss_dssp --HHHTTCCTTCEEEECCTTSCGG--GSTTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTTCSC
T ss_pred --HHHhhcCCCcEEEECCCCCchH--HHHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHHhcCCc
Confidence 7877788999999999987643 34444433244555666655433222223233347789999999999999997
Q ss_pred eEEcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCc
Q 018694 206 VNYMGGSG---KGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGS 261 (351)
Q Consensus 206 ~~~~g~~g---~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s 261 (351)
++++++.+ ...+.|+++|... +...+.|+ ++++.|++.+.+.+++..+..++
T Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~ 217 (266)
T 3d1l_A 163 VYDADSEQRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETARKV 217 (266)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHH
Confidence 88888764 5678899999853 45666675 67899999999988887765433
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=177.05 Aligned_cols=204 Identities=13% Similarity=0.156 Sum_probs=162.2
Q ss_pred CCCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 45 VCPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 45 ~~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|.++||||+|||+ |.||..++..|.+.|++|++|||++++.+.+.+.|+... +..+.+.++|+||+|+ ++..+++++
T Consensus 7 ~~~mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av-~~~~~~~v~ 84 (286)
T 3c24_A 7 NDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLAL-PDNIIEKVA 84 (286)
T ss_dssp CSCCCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECS-CHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcC-CchHHHHHH
Confidence 4455789999999 999999999999999999999999988888877776554 6777888999999999 667789999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCc------hhhccCc-------eeE--Eec
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGD------RGAKTGT-------LAI--FAG 187 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~------~~~~~g~-------~~~--~~~ 187 (351)
. ++.+.+.++++|++++++.+ ...+.+ . ..+..|+ ..|+++.. .....+. ..+ ..+
T Consensus 85 ~----~l~~~l~~~~ivv~~s~~~~--~~~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~ 156 (286)
T 3c24_A 85 E----DIVPRVRPGTIVLILDAAAP--YAGVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQ 156 (286)
T ss_dssp H----HHGGGSCTTCEEEESCSHHH--HHTCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEE
T ss_pred H----HHHHhCCCCCEEEECCCCch--hHHHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccC
Confidence 8 88888888999999887643 223333 2 2367788 66988876 3334452 222 245
Q ss_pred CCHHHHHHHHHHHHhhCc----eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCC
Q 018694 188 GDESVVQKLNPLFALMGK----VNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~----~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~ 258 (351)
++++..+.++++|+.+|. ++++++.+.+.+.|.+.|.....+...+.|++. .+++.|++.+++.+++..+.
T Consensus 157 ~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~ 232 (286)
T 3c24_A 157 GPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL 232 (286)
T ss_dssp SCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788999999999999997 778887777777688998888888999999888 56666999999998877654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-21 Score=171.15 Aligned_cols=243 Identities=17% Similarity=0.229 Sum_probs=168.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+|||+|||+|.||.+++..|.++| ++|++|||++++ .|+...+++.+.+.++|+||+|+ ++..+++++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v-~~~~~~~v~~ 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAV-KPDIAGSVLN 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECS-CTTTHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEe-CHHHHHHHHH
Confidence 479999999999999999999999 799999999876 47777888888888999999999 5788999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC---CHHHHHHHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPLF 200 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~ll 200 (351)
++.+.+ +++++|+.+++... +.+.+.++. +..++.. |... .....+ .++++++ +++..+.++++|
T Consensus 77 ----~l~~~l-~~~~vv~~~~gi~~--~~l~~~~~~-~~~~v~~~p~~p--~~~~~g-~~~~~~~~~~~~~~~~~~~~ll 145 (262)
T 2rcy_A 77 ----NIKPYL-SSKLLISICGGLNI--GKLEEMVGS-ENKIVWVMPNTP--CLVGEG-SFIYCSNKNVNSTDKKYVNDIF 145 (262)
T ss_dssp ----HSGGGC-TTCEEEECCSSCCH--HHHHHHHCT-TSEEEEEECCGG--GGGTCE-EEEEEECTTCCHHHHHHHHHHH
T ss_pred ----HHHHhc-CCCEEEEECCCCCH--HHHHHHhCC-CCcEEEECCChH--HHHcCC-eEEEEeCCCCCHHHHHHHHHHH
Confidence 888777 66777777666443 355555543 3233322 2221 112234 4555544 688899999999
Q ss_pred HhhCceEEcCCccHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhh---hhhhhcccC
Q 018694 201 ALMGKVNYMGGSGKGQFAKLA--NQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLD---LHGSRILKR 274 (351)
Q Consensus 201 ~~~g~~~~~g~~g~a~~~kl~--~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~ 274 (351)
+.+|.++++++.......++. .|.+. ..+.|++. .+++.|++.+.+.+++..+..++..+. ...+.+..+
T Consensus 146 ~~~G~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 221 (262)
T 2rcy_A 146 NSCGIIHEIKEKDMDIATAISGCGPAYV----YLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKD 221 (262)
T ss_dssp HTSEEEEECCGGGHHHHHHHTTSHHHHH----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HhCCCEEEeCHHHccHHHHHHccHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999987778765444444433 23333 33444444 478999999998888876554433222 223444444
Q ss_pred CC-CCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 275 DF-EPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 275 ~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
.+ .++++.. ..++..++.|++.++.+++.+.++++.+.+
T Consensus 222 ~~~~~~~t~~-------~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 222 NIVSPGGITA-------VGLYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp HHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 33 3455443 345666777999999999999999988754
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=172.36 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=167.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC---cccCCHHHhh-cCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA---HLADSPHSLA-SQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~---~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+|||+|||+|+||++++..|.++|++|++|+|+++.++.....|. ....+..+.+ .++|+||+|| |+.++++++.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilav-k~~~~~~~l~ 80 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAV-KTHQLDAVIP 80 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECS-CGGGHHHHGG
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeC-CccCHHHHHH
Confidence 589999999999999999999999999999999876654333342 1222344444 7899999999 9999999999
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCC-CchhhccCceeEEecCCHHHHHHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSG-GDRGAKTGTLAIFAGGDESVVQKLNPL 199 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~-~~~~~~~g~~~~~~~g~~~~~~~v~~l 199 (351)
.+.+.+.++++||++.||..... . ++.. ++.+..+-..+ +... .+...+.. ++.+..+.+.++
T Consensus 81 ----~l~~~l~~~~~iv~~~nGi~~~~-~----~~~~~v~~g~~~~~a~~~~pg~v~--~~~~~~~~-~~~~~~~~l~~~ 148 (294)
T 3g17_A 81 ----HLTYLAHEDTLIILAQNGYGQLE-H----IPFKNVCQAVVYISGQKKGDVVTH--FRDYQLRI-QDNALTRQFRDL 148 (294)
T ss_dssp ----GHHHHEEEEEEEEECCSSCCCGG-G----CCCSCEEECEEEEEEEEETTEEEE--EEEEEEEE-ECSHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEEeccCcccHh-h----CCCCcEEEEEEEEEEEEcCCCEEE--ECCCEEec-CccHHHHHHHHH
Confidence 89888888999999999854322 1 3322 22222221111 1111 11112222 345666788888
Q ss_pred HHhhCc-eEEcCCccHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCH--HHHHHHHhc
Q 018694 200 FALMGK-VNYMGGSGKGQFAKLANQITIAT--------------------TMVGLVEGMVYAHKAGLNV--ELFLNAIST 256 (351)
Q Consensus 200 l~~~g~-~~~~g~~g~a~~~kl~~n~~~~~--------------------~~~~~~Ea~~la~~~Gi~~--~~~~~~~~~ 256 (351)
|+..+. +.+..++-...|.|++.|...+. +..++.|+..++++.|++. +.+.+.+..
T Consensus 149 l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~ 228 (294)
T 3g17_A 149 VQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTI 228 (294)
T ss_dssp TTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888777 77777899999999999985431 5577889999999999764 333333321
Q ss_pred ---C-C-CCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH-cCC
Q 018694 257 ---G-A-AGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA-HGE 321 (351)
Q Consensus 257 ---~-~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~-~g~ 321 (351)
. . ..+.++ +.+.++... +++.+. +++++.++++|+++|+++.++++++...+ .|+
T Consensus 229 ~~~~~~~~~sSM~----qD~~~gr~t---Eid~i~---G~vv~~a~~~gv~~P~~~~l~~ll~~~e~~~~~ 289 (294)
T 3g17_A 229 YQGYPDEMGTSMY----YDIVHQQPL---EVEAIQ---GFIYRRAREHNLDTPYLDTIYSFLRAYQQNEGH 289 (294)
T ss_dssp HHTSCTTCCCHHH----HHHHTTCCC---SGGGTH---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCCCcHH----HHHHcCCCc---cHHHhh---hHHHHHHHHhCCCCChHHHHHHHHHHHHhcccc
Confidence 1 1 111111 112222222 344444 88999999999999999999999998864 443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=171.07 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=164.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CC--------------cccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GA--------------HLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~--------------~~~~~~~~~~~~~DiIi~~v 113 (351)
+|||+|||+|.||..++..|.+.|++|++|+|++++.+.+.+. ++ ...+++++++.++|+||+|+
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 83 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 83 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence 4799999999999999999999999999999999888888766 32 24567888888999999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC---CcEEe---ccCCCCchhhc-------cC
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN---CSAID---APVSGGDRGAK-------TG 180 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~---~~~v~---~pv~~~~~~~~-------~g 180 (351)
+....++++. ++.+.+.++++||++.+..+++. ++.+.+...+ +.|++ .|+.+...+.. .+
T Consensus 84 -~~~~~~~~~~----~l~~~l~~~~~vv~~~~~~~~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~ 157 (359)
T 1bg6_A 84 -PAIHHASIAA----NIASYISEGQLIILNPGATGGAL-EFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKG 157 (359)
T ss_dssp -CGGGHHHHHH----HHGGGCCTTCEEEESSCCSSHHH-HHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECS
T ss_pred -CchHHHHHHH----HHHHhCCCCCEEEEcCCCchHHH-HHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeec
Confidence 6667788888 88888889999998855334433 3444444332 44554 34433211110 01
Q ss_pred ceeEEe---cCCHHHHHHHHHHHHhhCceEEcCCccHHHHHHHH--------------------------------HHHH
Q 018694 181 TLAIFA---GGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLA--------------------------------NQIT 225 (351)
Q Consensus 181 ~~~~~~---~g~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~--------------------------------~n~~ 225 (351)
.+.+-. +++++..+.++++|..+. ...+ .|.|+. .+..
T Consensus 158 ~~~~g~~~~~~~~~~~~~l~~~~~~~~---~~~d----i~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (359)
T 1bg6_A 158 AMDFACLPAAKAGWALEQIGSVLPQYV---AVEN----VLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSV 230 (359)
T ss_dssp CEEEEEESGGGHHHHHHHHTTTCTTEE---ECSC----HHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHH
T ss_pred ceEEEeccccccHHHHHHHHHHhhhcE---EcCC----hHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHH
Confidence 111111 234445556666664431 1121 122222 1122
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchh--hhh-hhhhcccCCCCCccchh--hHHHHH----HHHHHHH
Q 018694 226 IATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKS--LDL-HGSRILKRDFEPGFFVN--HFVKDL----GICLKEC 296 (351)
Q Consensus 226 ~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~--~~~-~~~~~~~~~~~~~~~~~--~~~kd~----~~~~~~a 296 (351)
...+..++.|+..++++.|++.+.+.+.+......++. .+. ....+.++...| ..++ .+.+|+ +.+++++
T Consensus 231 ~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~-~e~~~~~~~~D~~~~~g~~~~~a 309 (359)
T 1bg6_A 231 GSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGP-INLNTRYFFEDVSTGLVPLSELG 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCC-SSSCCHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCC-CCCCccceecCcCccHHHHHHHH
Confidence 35567788999999999999987776665443321111 000 112233322222 2344 678887 7999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHc
Q 018694 297 QNMGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 297 ~~~gv~~p~~~~~~~l~~~~~~~ 319 (351)
+++|+++|+++.++++++.....
T Consensus 310 ~~~gv~~P~~~~l~~~~~~~~~~ 332 (359)
T 1bg6_A 310 RAVNVPTPLIDAVLDLISSLIDT 332 (359)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCchHHHHHHHHHHHHHCC
Confidence 99999999999999999876544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-20 Score=168.22 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=140.5
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCC--cccCCHHH-hhcCCCEEEEecCChhHHH
Q 018694 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGA--HLADSPHS-LASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~--~~~~~~~~-~~~~~DiIi~~vp~~~~~~ 120 (351)
++++|||+|||+|.||.+++..|.+.|+ +|++|||++++.+.+.+.|+ ...+++++ ++.++|+||+|| ++..+.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-p~~~~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-PVRTFR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-CGGGHH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-CHHHHH
Confidence 3456899999999999999999999999 99999999998888888776 45678888 899999999999 666788
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch----hh----ccCceeEEec---C
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR----GA----KTGTLAIFAG---G 188 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~----~~----~~g~~~~~~~---g 188 (351)
+++. ++.+.+.++++|+|++++.....+.+.+.++. .|+.+ |+.|... .+ ..+..++++. +
T Consensus 109 ~vl~----~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~ 181 (314)
T 3ggo_A 109 EIAK----KLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 181 (314)
T ss_dssp HHHH----HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTS
T ss_pred HHHH----HHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCC
Confidence 8888 88888899999999998877767777777653 78874 8887532 11 1455566664 4
Q ss_pred CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH
Q 018694 189 DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228 (351)
Q Consensus 189 ~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~ 228 (351)
+++..+.++++|+.+|. ++++++........++.......
T Consensus 182 ~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~ 222 (314)
T 3ggo_A 182 DKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAV 222 (314)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998 78888777777766666544433
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-21 Score=176.13 Aligned_cols=249 Identities=17% Similarity=0.080 Sum_probs=157.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCH----------HHhhcCCCEEEEecCChh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSP----------HSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~----------~~~~~~~DiIi~~vp~~~ 117 (351)
|+|||+|||+|+||+.++..|. +|++|++|+|++++.+.+++.|+....+. ++...++|+||+|| |++
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-K~~ 78 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV-KQH 78 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC-CGG
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe-CHH
Confidence 3589999999999999999999 99999999999888888888776543211 23456899999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec------cC-CCCch-hhccCceeEEe-cC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA------PV-SGGDR-GAKTGTLAIFA-GG 188 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~------pv-~~~~~-~~~~g~~~~~~-~g 188 (351)
++++++. .+.+. .+++ ||++.||.. ..+.+.+.++.. .++.+ -. .++.+ ....+.+.+-. .+
T Consensus 79 ~~~~~l~----~l~~~-~~~~-ivs~~nGi~-~~e~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~ 149 (307)
T 3ego_A 79 QLQSVFS----SLERI-GKTN-ILFLQNGMG-HIHDLKDWHVGH--SIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDD 149 (307)
T ss_dssp GHHHHHH----HTTSS-CCCE-EEECCSSSH-HHHHHHTCCCSC--EEEEEEECCEEEECSSSEEEEEECCCEEEEECTT
T ss_pred HHHHHHH----HhhcC-CCCe-EEEecCCcc-HHHHHHHhCCCC--cEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCC
Confidence 9999998 77664 5566 999999954 334555544422 22222 11 11111 11123322211 11
Q ss_pred CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCC
Q 018694 189 DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGLN 246 (351)
Q Consensus 189 ~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi~ 246 (351)
..+..+.+.+.|+..+. +.+..++-...|.|++.|...+. +..++.|+..++++.+
T Consensus 150 ~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~~-- 227 (307)
T 3ego_A 150 AEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLEN-- 227 (307)
T ss_dssp CCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCSC--
T ss_pred CcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhccC--
Confidence 22333334444444455 66777899999999999987664 3456677777766542
Q ss_pred HHHHHHHH----hcCC-CCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 018694 247 VELFLNAI----STGA-AGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 247 ~~~~~~~~----~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~ 319 (351)
++...+.+ .... ..+.++ ..+.++... +++.+. +++++.++++|+++|+++.++++++...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~sSM~----qD~~~gr~t---Eid~i~---G~vv~~a~~~gv~tP~~~~l~~li~~~e~~ 295 (307)
T 3ego_A 228 EEKAWERVQAVCGQTKENRSSML----VDVIGGRQT---EADAII---GYLLKEASLQGLDAVHLEFLYGSIKALERN 295 (307)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHH----HHHHHTCCC---SHHHHH---HHHHHHHHHTTCCCHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHhcCCCCchHH----HHHHcCCcc---cHHHhh---hHHHHHHHHcCCCCcHHHHHHHHHHHHHhh
Confidence 33333222 2111 111111 112222222 444444 899999999999999999999999876543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=170.68 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=141.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------CCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------GAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
+||+|||+|.||..||..|+ +|++|++||+++++++.+.+. ++...+++++ +.+||+||.|+|...++++.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~ 90 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVE 90 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHH
T ss_pred CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHH
Confidence 78999999999999999999 999999999999988887776 6777788876 78999999999999998887
Q ss_pred hhCCCCCcccCCCCCcEEE-ecCCCChhHHHHHHHHHh----cCCCcEEeccCCCCchhhccCceeEEecC---CHHHHH
Q 018694 123 LLHPSSGALSGLRPGGIIV-DMTTSEPSLASELSAAAS----SKNCSAIDAPVSGGDRGAKTGTLAIFAGG---DESVVQ 194 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii-~~s~~~~~~~~~l~~~~~----~~~~~~v~~pv~~~~~~~~~g~~~~~~~g---~~~~~~ 194 (351)
+.+ ++. .+ ++++++ ++|+..+. .+.+.+. ..|.+|++ |+.. +.++.++.+ ++++++
T Consensus 91 l~~---~l~-~~-~~~IlasntSti~~~---~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~ 154 (293)
T 1zej_A 91 VLR---EVE-RL-TNAPLCSNTSVISVD---DIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVA 154 (293)
T ss_dssp HHH---HHH-TT-CCSCEEECCSSSCHH---HHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHH
T ss_pred HHH---HHh-cC-CCCEEEEECCCcCHH---HHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHH
Confidence 762 343 34 888885 55666553 3333222 12556665 4432 344555544 899999
Q ss_pred HHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 195 KLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
++.++++.+|+ ++++++. +++|+++. ..++|++.++++ |++++++.+++..+.+.
T Consensus 155 ~~~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~ 210 (293)
T 1zej_A 155 FVEGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGL 210 (293)
T ss_dssp HHHHHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCC
Confidence 99999999999 8888864 67777765 469999999999 88999999999876543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=161.23 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=137.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCCc--ccCCHHHhhc-CCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGAH--LADSPHSLAS-QSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~~--~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~ 123 (351)
||||+|||+|.||.+++..|.+.|+ +|++|||++++.+.+.+.|+. ..+++++.+. ++|+||+|+ ++..+.+++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilav-p~~~~~~v~ 79 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-PVRTFREIA 79 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-CHHHHHHHH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcC-CHHHHHHHH
Confidence 5799999999999999999999999 999999999888887777764 3567888888 999999999 777888888
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCc----hhh----ccCceeEEe---cCCHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGD----RGA----KTGTLAIFA---GGDES 191 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~----~~~----~~g~~~~~~---~g~~~ 191 (351)
. ++.+.+.++++|++++++.....+.+.+.++. + ++.. |+.+.. ..+ ..+..++++ +++++
T Consensus 80 ~----~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~--~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~ 152 (281)
T 2g5c_A 80 K----KLSYILSEDATVTDQGSVKGKLVYDLENILGK-R--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKK 152 (281)
T ss_dssp H----HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-G--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHH
T ss_pred H----HHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-c--ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHH
Confidence 8 78777888999999998877666777777754 2 6653 655432 111 145545555 56888
Q ss_pred HHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH
Q 018694 192 VVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228 (351)
Q Consensus 192 ~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~ 228 (351)
..+.++++|+.+|. ++++++.....+.|++.|.....
T Consensus 153 ~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~ 190 (281)
T 2g5c_A 153 RLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAV 190 (281)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 77788777788999998887654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=156.19 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=142.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+|||+|.||.+++..|.+.|++|++|||++++.+.+.+.|+. ...+++++ .++|+||+|+ ++..+.+++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av-~~~~~~~~~~--- 75 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCT-PIQLILPTLE--- 75 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECS-CHHHHHHHHH---
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEEC-CHHHHHHHHH---
Confidence 689999999999999999999999999999999988888777763 46678888 8999999999 7788899998
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch----hh----ccCceeEEec---CCHHHHHH
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR----GA----KTGTLAIFAG---GDESVVQK 195 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~----~~----~~g~~~~~~~---g~~~~~~~ 195 (351)
++.+.+.++++|+++++......+.+.+.+. .++.. |+.+... .. ..+..+++.. ++++..+.
T Consensus 76 -~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~ 150 (279)
T 2f1k_A 76 -KLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (279)
T ss_dssp -HHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred -HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHH
Confidence 8888888899999998776655555555432 56655 6654321 11 1343444442 47888999
Q ss_pred HHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHH
Q 018694 196 LNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLN--VELFLNAI 254 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~--~~~~~~~~ 254 (351)
++++|+.+|. ++++++.....+.+++.|....... ++.+ .+...|++ .+....++
T Consensus 151 v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~---~~~~~~~~~~~~~~~~l~ 208 (279)
T 2f1k_A 151 LRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQ---ACAGEKDGDILKLAQNLA 208 (279)
T ss_dssp HHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHH---HHHTCSCHHHHHHHHHHC
T ss_pred HHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHH---HHHhcccccchhHHHhhc
Confidence 9999999997 8888888888999999887555433 2333 23455655 44444443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=151.08 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=127.1
Q ss_pred CCCCCCeEEEEccChhhHHHHHHHHHCCCeEEE-EeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTV-FNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 45 ~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~-~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
+..+||||+|||+|+||.+++..|.+.|++|++ |+|++++.+.+.+. |+....+..+.+.++|+||+|+ ++..++++
T Consensus 19 ~~m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilav-p~~~~~~v 97 (220)
T 4huj_A 19 YFQSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAV-PYDSIADI 97 (220)
T ss_dssp TGGGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEES-CGGGHHHH
T ss_pred hhhcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeC-ChHHHHHH
Confidence 334578999999999999999999999999999 99999998887665 7666666667788999999999 78899999
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCCh------------hHHHHHHHHHhcCCCcEEec-cCCCCchhh------ccCcee
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEP------------SLASELSAAASSKNCSAIDA-PVSGGDRGA------KTGTLA 183 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~------------~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~------~~g~~~ 183 (351)
+. ++.+ + ++++||+++++.+ ...+.+.+.++ +..++.+ |+....... ..+...
T Consensus 98 ~~----~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~~v~~~g~~~~~~~~~v 169 (220)
T 4huj_A 98 VT----QVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP--GAKVVKAFNTLPAAVLAADPDKGTGSRVL 169 (220)
T ss_dssp HT----TCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST--TCEEEEESCSSCHHHHTSCSBCSSCEEEE
T ss_pred HH----Hhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC--CCCEEECCCCCCHHHhhhCcccCCCCeeE
Confidence 98 7776 4 6889999998752 15667777775 3445544 333222211 112334
Q ss_pred EEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHH
Q 018694 184 IFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFA 218 (351)
Q Consensus 184 ~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~ 218 (351)
++.+.+++..+.++++|+.+|+ ++++|+.+.+.++
T Consensus 170 ~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 170 FLSGNHSDANRQVAELISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence 5566688999999999999999 9999998887664
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=156.06 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=122.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCC--cccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||||+|||+|.||.+++..|.+. |++|++|||++++.+.+.+.|. ....++++++.++|+||+|| ++...++++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-p~~~~~~v~~ 84 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-PIKKTIDFIK 84 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-CHHHHHHHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-CHHHHHHHHH
Confidence 58999999999999999999987 6799999999998888877776 35667888888999999999 7777788998
Q ss_pred CCCCCcccC-CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC----chhhc----cCceeEEe---cCCHH
Q 018694 125 HPSSGALSG-LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG----DRGAK----TGTLAIFA---GGDES 191 (351)
Q Consensus 125 ~~~~~i~~~-l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~----~~~~~----~g~~~~~~---~g~~~ 191 (351)
++.+. +.++++|++++++.+...+.+.+.++..+++++.. |+.+. +.... .+..+++. +++++
T Consensus 85 ----~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~ 160 (290)
T 3b1f_A 85 ----ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPN 160 (290)
T ss_dssp ----HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTT
T ss_pred ----HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHH
Confidence 88887 88899999998886666677777776446778874 77542 21111 34434433 35788
Q ss_pred HHHHHHHHHHhhCc-eEEcCC
Q 018694 192 VVQKLNPLFALMGK-VNYMGG 211 (351)
Q Consensus 192 ~~~~v~~ll~~~g~-~~~~g~ 211 (351)
..+.++++|+.+|. ++++++
T Consensus 161 ~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 161 TIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp HHHHHHHHTGGGCCEEEECCH
T ss_pred HHHHHHHHHHHcCCEEEEcCH
Confidence 89999999999998 666664
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=151.85 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=136.0
Q ss_pred CCCCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 46 CPTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 46 ~~~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+++++||+||| +|.||.+++..|.+.|++|++|+|+++. +..+.+.++|+||+|| ++..+.+++.
T Consensus 18 ~~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilav-p~~~~~~vl~ 83 (298)
T 2pv7_A 18 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSV-PINLTLETIE 83 (298)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECS-CGGGHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeC-CHHHHHHHHH
Confidence 34567999999 9999999999999999999999998642 5667788999999999 7777999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC-CHHHHHHHHHHHHh
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG-DESVVQKLNPLFAL 202 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g-~~~~~~~v~~ll~~ 202 (351)
++.+.+.++++|++++++.....+.+.+.. +..++.. |+++.......+..++++.+ +++..+.++++|+.
T Consensus 84 ----~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~ 156 (298)
T 2pv7_A 84 ----RLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQI 156 (298)
T ss_dssp ----HHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHH
T ss_pred ----HHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 888888899999999887665555555543 3567775 87776544444554555443 78888999999999
Q ss_pred hCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 203 MGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 203 ~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
+|. ++++++.....+.+++.+...... ..+.+++ ...|++.++..++
T Consensus 157 ~G~~~~~~~~~~~d~~~a~~~~~p~~~a-~~l~~~l---~~~g~~~~~~~~l 204 (298)
T 2pv7_A 157 WGAKIYQTNATEHDHNMTYIQALRHFST-FANGLHL---SKQPINLANLLAL 204 (298)
T ss_dssp TTCEEEECCHHHHHHHHHHHTHHHHHHH-HHHHHHH---TTSSCCHHHHHHT
T ss_pred cCCEEEECCHHHHHHHHHHHHHHHHHHH-HHHHHHH---HhcCCCHHHHHhh
Confidence 998 677776666777777777654332 2333332 2377877655544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=152.70 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=137.6
Q ss_pred CCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH-----------hcC------------------Cc
Q 018694 44 PVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-----------DIG------------------AH 94 (351)
Q Consensus 44 ~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~-----------~~g------------------~~ 94 (351)
.|...|+||+|||+|.||..||..|+++|++|++||+++++++... +.| +.
T Consensus 10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp --CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 3444568999999999999999999999999999999988766532 122 34
Q ss_pred ccCCHHHhhcCCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCC
Q 018694 95 LADSPHSLASQSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSG 172 (351)
Q Consensus 95 ~~~~~~~~~~~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~ 172 (351)
..+++++.+.++|+||+|+|...++ +.++. ++.+.+.++++|++.+++.+. .++.+.+.. ..+++.. |+.+
T Consensus 90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~----~l~~~~~~~~iv~s~ts~i~~--~~l~~~~~~-~~~~~g~h~~~P 162 (302)
T 1f0y_A 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFK----RLDKFAAEHTIFASNTSSLQI--TSIANATTR-QDRFAGLHFFNP 162 (302)
T ss_dssp EESCHHHHTTSCSEEEECCCSCHHHHHHHHH----HHTTTSCTTCEEEECCSSSCH--HHHHTTSSC-GGGEEEEEECSS
T ss_pred EecCHHHhhcCCCEEEEcCcCcHHHHHHHHH----HHHhhCCCCeEEEECCCCCCH--HHHHHhcCC-cccEEEEecCCC
Confidence 5678887889999999999776554 45666 777778888888877665442 244443321 2234433 2222
Q ss_pred CchhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018694 173 GDRGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNV 247 (351)
Q Consensus 173 ~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 247 (351)
.. .+....++++ +++..+.+.++++.+|+ ++++++ .| ++++|++. .+++|++.++++.|+++
T Consensus 163 ~~----~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~i~nr~l~----~~~~Ea~~l~~~g~~~~ 229 (302)
T 1f0y_A 163 VP----VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----FIVNRLLV----PYLMEAIRLYERGDASK 229 (302)
T ss_dssp TT----TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----TTHHHHHH----HHHHHHHHHHHTTSSCH
T ss_pred cc----cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----ccHHHHHH----HHHHHHHHHHHcCCCCH
Confidence 11 1233445555 88999999999999998 777765 33 35555543 45899999999999999
Q ss_pred HHHHHHHhcC
Q 018694 248 ELFLNAISTG 257 (351)
Q Consensus 248 ~~~~~~~~~~ 257 (351)
+++..++..+
T Consensus 230 ~~id~~~~~g 239 (302)
T 1f0y_A 230 EDIDTAMKLG 239 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9988887543
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=162.95 Aligned_cols=255 Identities=11% Similarity=0.009 Sum_probs=175.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--------eEEEEeCCcccc-----hhHHhc--------------CCcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--------TVTVFNRTLSKA-----QPLLDI--------------GAHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--------~V~~~dr~~~~~-----~~~~~~--------------g~~~~~~~~~ 101 (351)
+.||+|||+|+||+++|..|+++|+ +|.+|.|+++.. +.++.. .+..++++++
T Consensus 34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~ 113 (391)
T 4fgw_A 34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID 113 (391)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence 4599999999999999999998875 599999987642 222221 2456788999
Q ss_pred hhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-------hHHHHHHHHHhcCCCcEEeccCCCCc
Q 018694 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-------SLASELSAAASSKNCSAIDAPVSGGD 174 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-------~~~~~l~~~~~~~~~~~v~~pv~~~~ 174 (351)
+++++|+||+++ +.+.+++++. ++.+++.++..+|++++|.. -.++.+.+.+. ..+.++.+|.+...
T Consensus 114 al~~ad~ii~av-Ps~~~r~~l~----~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~E 187 (391)
T 4fgw_A 114 SVKDVDIIVFNI-PHQFLPRICS----QLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIATE 187 (391)
T ss_dssp HHTTCSEEEECS-CGGGHHHHHH----HHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHHH
T ss_pred HHhcCCEEEEEC-ChhhhHHHHH----HhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHHH
Confidence 999999999999 8999999999 99999999999999999743 12344444443 34567888999888
Q ss_pred hhhccCceeEEecCCHH---------HHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHH
Q 018694 175 RGAKTGTLAIFAGGDES---------VVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIA 227 (351)
Q Consensus 175 ~~~~~g~~~~~~~g~~~---------~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~ 227 (351)
+.....+...+.+.+.. ..+.++.+|..-.+ ++...|. |....+++..|.-.+
T Consensus 188 Va~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAA 267 (391)
T 4fgw_A 188 VAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAA 267 (391)
T ss_dssp HHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 88766665555544322 24567777776555 4443342 667777788899999
Q ss_pred HHHHHHHHHHHHHHHc---CCCHHHHHHHHhcCCCCchhhhhhhhhcccCCC----C-Cccchhh------------HHH
Q 018694 228 TTMVGLVEGMVYAHKA---GLNVELFLNAISTGAAGSKSLDLHGSRILKRDF----E-PGFFVNH------------FVK 287 (351)
Q Consensus 228 ~~~~~~~Ea~~la~~~---Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~----~-~~~~~~~------------~~k 287 (351)
.+..++.|+..++++. |-++.++......++ ....+++. .|+.+ . .|.+.+. ...
T Consensus 268 LitrGl~Em~rlg~al~~~g~~~tt~~glaGlGD---Li~Tc~sS--RNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ 342 (391)
T 4fgw_A 268 IQRVGLGEIIRFGQMFFPESREETYYQESAGVAD---LITTCAGG--RNVKVARLMATSGKDAWECEKELLNGQSAQGLI 342 (391)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHH---HHHHHHSS--HHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeecCCCcccc---eeEEecCC--ccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHH
Confidence 9999999999999987 444333322211111 11222210 01100 0 1222222 234
Q ss_pred HHHHHHHHHHhcCC--CCcHHHHHHHHHH
Q 018694 288 DLGICLKECQNMGL--ALPGLALAQQLYL 314 (351)
Q Consensus 288 d~~~~~~~a~~~gv--~~p~~~~~~~l~~ 314 (351)
....+.++++++|+ ++|+++++|+++.
T Consensus 343 ta~~v~~l~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 343 TCKEVHEWLETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp HHHHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 44578889999999 8999999999886
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=148.72 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=134.9
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-C-------CcccCCHHHhhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-G-------AHLADSPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g-------~~~~~~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
|||+||| +|.||..++..|.+.|++|++++|++++.+.+.+. + +. ..+.+++++++|+||+|+ ++..++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~-~~~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTI-PWEHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECS-CHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeC-ChhhHH
Confidence 6899999 99999999999999999999999998887766543 2 33 356778888999999999 677788
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCCh------------hHHHHHHHHHhcCCCcEEec--cCCCCchhh--ccCceeE
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEP------------SLASELSAAASSKNCSAIDA--PVSGGDRGA--KTGTLAI 184 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~------------~~~~~l~~~~~~~~~~~v~~--pv~~~~~~~--~~g~~~~ 184 (351)
+++. ++.+.+ +++++++++++.. ...+++.+.++ +..++++ |+.+..... ..+.+.+
T Consensus 79 ~~~~----~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (212)
T 1jay_A 79 DTAR----DLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDV 151 (212)
T ss_dssp HHHH----HTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEE
T ss_pred HHHH----HHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccE
Confidence 8888 776666 5889999998543 23567777775 4678887 444333322 3455666
Q ss_pred EecCC-HHHHHHHHHHHHhh-Cc-eEEcCCccHHHHHHHHHHHHHHH
Q 018694 185 FAGGD-ESVVQKLNPLFALM-GK-VNYMGGSGKGQFAKLANQITIAT 228 (351)
Q Consensus 185 ~~~g~-~~~~~~v~~ll~~~-g~-~~~~g~~g~a~~~kl~~n~~~~~ 228 (351)
+++++ ++..+.++++|+.+ |. ++++++.+.+.++|.+.|++...
T Consensus 152 ~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~ 198 (212)
T 1jay_A 152 PVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNI 198 (212)
T ss_dssp EEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHH
Confidence 76674 88999999999999 98 78899999999999999988765
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=149.10 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=141.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----------C--------------CcccCCHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----------G--------------AHLADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----------g--------------~~~~~~~~~~~ 103 (351)
++||+|||+|.||..||..|+++|++|++||+++++++.+.+. | +...+++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 5799999999999999999999999999999999887665543 2 45677888888
Q ss_pred cCCCEEEEecCChh-HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCc
Q 018694 104 SQSDVVFSIVGYPS-DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGT 181 (351)
Q Consensus 104 ~~~DiIi~~vp~~~-~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~ 181 (351)
.++|+||+|+|... ....++. ++.+.+.+++++++.+++.+ ..++.+.+.. ..+++.. +..+. ..+.
T Consensus 84 ~~aDlVi~av~~~~~~~~~v~~----~l~~~~~~~~il~s~tS~~~--~~~la~~~~~-~~~~ig~h~~~p~----~~~~ 152 (283)
T 4e12_A 84 KDADLVIEAVPESLDLKRDIYT----KLGELAPAKTIFATNSSTLL--PSDLVGYTGR-GDKFLALHFANHV----WVNN 152 (283)
T ss_dssp TTCSEEEECCCSCHHHHHHHHH----HHHHHSCTTCEEEECCSSSC--HHHHHHHHSC-GGGEEEEEECSST----TTSC
T ss_pred ccCCEEEEeccCcHHHHHHHHH----HHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CcceEEEccCCCc----ccCc
Confidence 99999999997654 4455666 77777889999998776654 3456665542 3344443 22211 1234
Q ss_pred eeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 018694 182 LAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTG 257 (351)
Q Consensus 182 ~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~ 257 (351)
++.++++ +++..+.+.++++.+|+ +++++....+. ++++++. ..+.|++.++++.+.+++++.+++..+
T Consensus 153 lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~~----~~~~ea~~l~~~g~~~~~~id~~~~~~ 225 (283)
T 4e12_A 153 TAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY---VLNSLLV----PLLDAAAELLVDGIADPETIDKTWRIG 225 (283)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT---THHHHHH----HHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE---EehHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 4555555 78999999999999999 77774433332 3444443 468999999999999999999988654
Q ss_pred C
Q 018694 258 A 258 (351)
Q Consensus 258 ~ 258 (351)
.
T Consensus 226 ~ 226 (283)
T 4e12_A 226 T 226 (283)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=153.81 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=135.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch--------hHHhcC-------------CcccCCHHHhhcCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ--------PLLDIG-------------AHLADSPHSLASQS 106 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~--------~~~~~g-------------~~~~~~~~~~~~~~ 106 (351)
.++||+|||+|.||..||..|+++|++|++||+++++.. .+.++| +..+++++ .+++|
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a 131 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNC 131 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence 468999999999999999999999999999999987421 222333 24566775 67899
Q ss_pred CEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeE
Q 018694 107 DVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAI 184 (351)
Q Consensus 107 DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~ 184 (351)
|+||+|||...+++ +++. ++.+.+.++++|++.+++.+. .++++.+.. ..+++.. ++.+.. ...++.
T Consensus 132 DlVIeAVpe~~~vk~~v~~----~l~~~~~~~aIlasnTSsl~i--~~ia~~~~~-p~r~iG~HffnPv~----~m~LvE 200 (460)
T 3k6j_A 132 DLIVESVIEDMKLKKELFA----NLENICKSTCIFGTNTSSLDL--NEISSVLRD-PSNLVGIHFFNPAN----VIRLVE 200 (460)
T ss_dssp SEEEECCCSCHHHHHHHHH----HHHTTSCTTCEEEECCSSSCH--HHHHTTSSS-GGGEEEEECCSSTT----TCCEEE
T ss_pred CEEEEcCCCCHHHHHHHHH----HHHhhCCCCCEEEecCCChhH--HHHHHhccC-CcceEEEEecchhh----hCCEEE
Confidence 99999998766655 5555 787888899999876665442 355554432 2234433 222211 134455
Q ss_pred EecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 185 FAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 185 ~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
++.+ ++++.+.+.++++.+|+ ++++++ +.+. ++|+++. ..+.|++.++++.|++++++.+++.
T Consensus 201 Iv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~----~~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 201 IIYGSHTSSQAIATAFQACESIKKLPVLVGN-CKSF---VFNRLLH----VYFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp EECCSSCCHHHHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHH----HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5554 89999999999999999 788886 3332 4555555 3589999999999999999999876
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=153.63 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=136.6
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc----CCCEEEEecCChhHHHHH
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS----QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~----~~DiIi~~vp~~~~~~~v 122 (351)
+.++||+|||+|.||.+|+..|.+.|++|++|||++++.+.+.+.|+....++++++. ++|+||+|| ++..+.++
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilav-P~~~~~~v 84 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAV-PMTAIDSL 84 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECS-CHHHHHHH
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeC-CHHHHHHH
Confidence 3458999999999999999999999999999999999888888888887788888765 479999999 57788889
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCc-hhh-------ccCceeEEecC---CH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGD-RGA-------KTGTLAIFAGG---DE 190 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~-~~~-------~~g~~~~~~~g---~~ 190 (351)
+. ++.+. .++++|+|+++......+.+.+.+. +..|+.. |+.|+. .+. ..+..++++++ ++
T Consensus 85 l~----~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~ 157 (341)
T 3ktd_A 85 LD----AVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDG 157 (341)
T ss_dssp HH----HHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSS
T ss_pred HH----HHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCCh
Confidence 98 77765 7889999999887776666666543 5789885 888865 222 13444566554 45
Q ss_pred H--------HHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH
Q 018694 191 S--------VVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228 (351)
Q Consensus 191 ~--------~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~ 228 (351)
+ .++.++++|+.+|. +++++.........++.......
T Consensus 158 e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~i 204 (341)
T 3ktd_A 158 TDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHIL 204 (341)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHH
Confidence 6 78999999999997 88888766666666666655533
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=159.18 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=139.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------cC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------IG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 104 (351)
++||+|||+|.||..||..|+++|++|++||+++++++.+.+ +| +...++++ .+.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 579999999999999999999999999999999988776543 22 23456665 578
Q ss_pred CCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCce
Q 018694 105 QSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTL 182 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~ 182 (351)
++|+||+|+|...++ ++++. ++.+.+.+++++++.+++.+. ..+.+.+.. ...++.. ++.+.+. ..+
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~----~l~~~~~~~~IlasntSti~i--~~ia~~~~~-p~~~ig~hf~~Pa~v----~~L 152 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFA----QLAEVCPPQTLLTTNTSSISI--TAIAAEIKN-PERVAGLHFFNPAPV----MKL 152 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHH----HHHHHSCTTCEEEECCSSSCH--HHHTTTSSS-GGGEEEEEECSSTTT----CCE
T ss_pred CCCEEEEcCCCcHHHHHHHHH----HHHHhhccCcEEEecCCCCCH--HHHHHHccC-ccceEEeeecChhhh----CCe
Confidence 999999999877666 45666 777778889988654443332 244444322 2234433 2222222 245
Q ss_pred eEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 183 AIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 183 ~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
+.++++ +++..+.+.++++.+|+ ++++++.. + +++|+++.. +++|++.++++.+.+++++.+++..+.
T Consensus 153 vevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~~~ 224 (483)
T 3mog_A 153 VEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRDGA 224 (483)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHHTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhcC
Confidence 666666 89999999999999999 77777632 1 677777665 589999999999999999999998654
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=144.18 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=118.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.+|||+|||+|.||.+++..|.++|++|++|+|+++ .+.++|+||+|+ ++..+++++.
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av-~~~~~~~v~~--- 75 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAV-PYPALAALAK--- 75 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECS-CHHHHHHHHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcC-CcHHHHHHHH---
Confidence 358999999999999999999999999999999864 356899999999 5888999998
Q ss_pred CCcccCCCCCcEEEecCCCCh--h-------H----HHHHHHHHhcCCCcEEec------cCCCCchhhccCceeEEecC
Q 018694 128 SGALSGLRPGGIIVDMTTSEP--S-------L----ASELSAAASSKNCSAIDA------PVSGGDRGAKTGTLAIFAGG 188 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~--~-------~----~~~l~~~~~~~~~~~v~~------pv~~~~~~~~~g~~~~~~~g 188 (351)
++.+.+. ++++++++++.+ . . .+.+.+.++ +..++++ |..+.......+...+++++
T Consensus 76 -~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g 151 (209)
T 2raf_A 76 -QYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG 151 (209)
T ss_dssp -HTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEEE
T ss_pred -HHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEcC
Confidence 7877776 899999999643 1 1 456666654 4567773 33332222111233444444
Q ss_pred -CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH
Q 018694 189 -DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228 (351)
Q Consensus 189 -~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~ 228 (351)
+++..+.++++|+.+|. ++++++.+.+.+.|.+.|.+...
T Consensus 152 ~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~~~ 193 (209)
T 2raf_A 152 NDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQMTL 193 (209)
T ss_dssp SCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHHHH
Confidence 67889999999999997 88999999999999988877543
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-18 Score=152.02 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=121.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeE-EEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTV-TVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V-~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
||||+|||+|.||..++..|.++ ++| .+|||++++.+.+.+. |. .+.++++++.++|+||+|+ ++....+++.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav-~~~~~~~v~~-- 76 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIV-PDRYIKTVAN-- 76 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECS-CTTTHHHHHT--
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeC-ChHHHHHHHH--
Confidence 58999999999999999999888 999 5999999988877654 66 6677788888999999999 6666888887
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhc-cCceeEEecCCHHHHHHHHHHHHhhCc
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAK-TGTLAIFAGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~-~g~~~~~~~g~~~~~~~v~~ll~~~g~ 205 (351)
++. .++++||+++++.+.. .+.+. ..+..+...++.+.+.... ...+.++.+++++..+.++++|+.+|.
T Consensus 77 --~l~---~~~~ivi~~s~~~~~~--~l~~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~ 147 (276)
T 2i76_A 77 --HLN---LGDAVLVHCSGFLSSE--IFKKS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 147 (276)
T ss_dssp --TTC---CSSCCEEECCSSSCGG--GGCSS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCS
T ss_pred --Hhc---cCCCEEEECCCCCcHH--HHHHh--hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCC
Confidence 665 5788999998765532 12111 0111122234444333322 233456667777889999999999996
Q ss_pred -eEEcCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018694 206 -VNYMGGSGK---GQFAKLANQITIATTMVGLVEGMVYAHKAGLNVE 248 (351)
Q Consensus 206 -~~~~g~~g~---a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 248 (351)
++++++.+. ....+++.|.+. ..+.|+..++++.|++.+
T Consensus 148 ~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~ 190 (276)
T 2i76_A 148 KYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEP 190 (276)
T ss_dssp CEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCH
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChH
Confidence 888886432 233355555443 456777788999999987
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=139.71 Aligned_cols=164 Identities=19% Similarity=0.305 Sum_probs=118.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.+|||+|||+|.||..++..|.+.|++|++++|++++.+.+.+.|+... +.++++.++|+||+|+ ++.++++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av-~~~~~~~v~---- 100 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAV-FREHYSSLC---- 100 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECS-CGGGSGGGG----
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECC-ChHHHHHHH----
Confidence 4689999999999999999999999999999999988887776677665 7788888999999999 456555544
Q ss_pred CCcccCCCCCcEEEecCCCChhHH--------HHHHHHHhcCCCcEEeccCCCCch----hhccCc-eeEEecCCHHHHH
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLA--------SELSAAASSKNCSAIDAPVSGGDR----GAKTGT-LAIFAGGDESVVQ 194 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~--------~~l~~~~~~~~~~~v~~pv~~~~~----~~~~g~-~~~~~~g~~~~~~ 194 (351)
++.+.+ +++++|+++++.+... +.+.+.++ +..++.+.+..... ....+. ..++.+++++..+
T Consensus 101 -~l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~--~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 176 (215)
T 2vns_A 101 -SLSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP--TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKR 176 (215)
T ss_dssp -GGHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT--TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHH
T ss_pred -HHHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC--CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHH
Confidence 333344 7899999999876432 12223333 33444431111100 011122 3566777999999
Q ss_pred HHHHHHHhhCc-eEEcCCccHHHHHHHH
Q 018694 195 KLNPLFALMGK-VNYMGGSGKGQFAKLA 221 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g~a~~~kl~ 221 (351)
.++++|+.+|. ++++++.+.+.+++..
T Consensus 177 ~v~~ll~~~G~~~~~~g~~~~~~~~e~~ 204 (215)
T 2vns_A 177 AVSEMALAMGFMPVDMGSLASAWEVEAM 204 (215)
T ss_dssp HHHHHHHHTTCEEEECCSGGGHHHHHHS
T ss_pred HHHHHHHHcCCceEeecchhhhhHhhhh
Confidence 99999999999 8899999999987643
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-19 Score=151.64 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=118.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.|||+|||+|+||..++..|.+.|++|++|+|+++ .+.+...|+... +.++++.++|+||+|+ +++++++++
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav-~~~~~~~v~----- 90 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAV-HREHYDFLA----- 90 (201)
Confidence 47899999999999999999999999999999977 555555566655 7778888999999999 556777665
Q ss_pred CcccCCCCCcEEEecCCCChh------HHHHHHHHHhcCCCcEEec-cCCCCchhhccCc-----eeEEecCCHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPS------LASELSAAASSKNCSAIDA-PVSGGDRGAKTGT-----LAIFAGGDESVVQKL 196 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~------~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~-----~~~~~~g~~~~~~~v 196 (351)
++.+ ..++++||+++++.+. ..+.+.+.+.. ..++.+ |+.+..... .|. ..++++++++.++.+
T Consensus 91 ~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~--~~vvra~~n~~a~~~~-~g~l~g~~~~~~~g~~~~~~~~v 166 (201)
T 2yjz_A 91 ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG--AHVVKAFNTISAWALQ-SGTLDASRQVFVCGNDSKAKDRV 166 (201)
Confidence 2333 3468899999998762 23445444432 234444 333322211 122 156677788889999
Q ss_pred HHHHHhhCc-eEEcCCccHHHHHHHH
Q 018694 197 NPLFALMGK-VNYMGGSGKGQFAKLA 221 (351)
Q Consensus 197 ~~ll~~~g~-~~~~g~~g~a~~~kl~ 221 (351)
+++|+.+|. ++++|+.+.+.++|.+
T Consensus 167 ~~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 167 MDIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 999999999 9999999999998754
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=153.09 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=130.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------cC-------------CcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------IG-------------AHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~ 103 (351)
.|+||+|||+|.||..||..|+++|++|++||++++.++...+ .| +...+++ +.+
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 389 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESF 389 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence 4679999999999999999999999999999999887655321 12 2345566 567
Q ss_pred cCCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCCCchhhc
Q 018694 104 SQSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSGGDRGAK 178 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~~~~~~~ 178 (351)
.+||+||+|||...+++ +++. ++.+.+.+++++++.+++.+. .++.+.+... +.+|++ |+..
T Consensus 390 ~~aDlVIeaVpe~~~vk~~v~~----~l~~~~~~~~IlasntStl~i--~~la~~~~~p~~~iG~hf~~-P~~~------ 456 (725)
T 2wtb_A 390 RDVDMVIEAVIENISLKQQIFA----DLEKYCPQHCILASNTSTIDL--NKIGERTKSQDRIVGAHFFS-PAHI------ 456 (725)
T ss_dssp TTCSEEEECCCSCHHHHHHHHH----HHHHHSCTTCEEEECCSSSCH--HHHTTTCSCTTTEEEEEECS-STTT------
T ss_pred CCCCEEEEcCcCCHHHHHHHHH----HHHhhCCCCcEEEeCCCCCCH--HHHHHHhcCCCCEEEecCCC-Cccc------
Confidence 89999999998777665 4555 677778888888776655443 2444433221 233332 3321
Q ss_pred cCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 179 TGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 179 ~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
..++.++.| ++++.+.+.++++.+|+ ++++++ .|. ++|+++. ..++|++.++++ |++++++.++
T Consensus 457 -~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~e~id~~ 525 (725)
T 2wtb_A 457 -MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AVNRMFF----PYTQAAMFLVEC-GADPYLIDRA 525 (725)
T ss_dssp -CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHH
T ss_pred -CceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHHHHHHHC-CCCHHHHHHH
Confidence 234444444 89999999999999999 778877 443 3444443 458999999887 9999999988
Q ss_pred H
Q 018694 254 I 254 (351)
Q Consensus 254 ~ 254 (351)
+
T Consensus 526 ~ 526 (725)
T 2wtb_A 526 I 526 (725)
T ss_dssp H
T ss_pred H
Confidence 8
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=145.28 Aligned_cols=183 Identities=16% Similarity=0.226 Sum_probs=128.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------cC-----------CcccCCHHHhhcC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------IG-----------AHLADSPHSLASQ 105 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~g-----------~~~~~~~~~~~~~ 105 (351)
.++||+|||+|.||..||..|+++|++|++||+++++++...+ .| ....+++ +.+.+
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 114 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST 114 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence 4679999999999999999999999999999999887655432 11 1234566 56789
Q ss_pred CCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCCCchhhccC
Q 018694 106 SDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSGGDRGAKTG 180 (351)
Q Consensus 106 ~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~~~~~~~~g 180 (351)
+|+||+|||...++ .+++. ++.+.+.++++|++.+ +.+... .+.+.+... +.+|. .|.. ..
T Consensus 115 aDlVIeaVpe~~~~k~~v~~----~l~~~~~~~~ii~snT-s~~~~~-~la~~~~~~~~~ig~hf~-~P~~-------~~ 180 (463)
T 1zcj_A 115 VDLVVEAVFEDMNLKKKVFA----ELSALCKPGAFLCTNT-SALNVD-DIASSTDRPQLVIGTHFF-SPAH-------VM 180 (463)
T ss_dssp CSEEEECCCSCHHHHHHHHH----HHHHHSCTTCEEEECC-SSSCHH-HHHTTSSCGGGEEEEEEC-SSTT-------TC
T ss_pred CCEEEEcCCCCHHHHHHHHH----HHHhhCCCCeEEEeCC-CCcCHH-HHHHHhcCCcceEEeecC-CCcc-------cc
Confidence 99999999776544 45555 6777788899988744 334443 555544321 23333 2332 12
Q ss_pred ceeEEec---CCHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 181 TLAIFAG---GDESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 181 ~~~~~~~---g~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
.++.++. ++++..+.+.++++.+|+ ++++++ .|. ++++++.. .+.|++.+++. |++++++.+++.
T Consensus 181 ~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gf-----i~Nrll~~----~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF-----VGNRMLAP----YYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTT-----THHHHHHH----HHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred eeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHHH----HHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3344444 388999999999999998 788886 443 33443332 35899888776 899999988876
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=151.90 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=131.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~ 103 (351)
.++||+|||+|.||..||..|+++|++|++||+++++++.. .++| +...+++ +.+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence 35799999999999999999999999999999998876652 2233 3345566 667
Q ss_pred cCCCEEEEecCChhHHHH-HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCc
Q 018694 104 SQSDVVFSIVGYPSDVRH-VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGT 181 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~-v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~ 181 (351)
.+||+||+|||...+++. ++. ++.+.+.+++++++.+++.+. .++.+.+. ...+++.. +..+.. .+.
T Consensus 392 ~~aDlVIeaV~e~~~vk~~v~~----~l~~~~~~~~IlasntStl~i--~~la~~~~-~~~~~ig~hf~~P~~----~~~ 460 (715)
T 1wdk_A 392 GNVDLVVEAVVENPKVKQAVLA----EVENHVREDAILASNTSTISI--SLLAKALK-RPENFVGMHFFNPVH----MMP 460 (715)
T ss_dssp GGCSEEEECCCSCHHHHHHHHH----HHHTTSCTTCEEEECCSSSCH--HHHGGGCS-CGGGEEEEECCSSTT----TCC
T ss_pred CCCCEEEEcCCCCHHHHHHHHH----HHHhhCCCCeEEEeCCCCCCH--HHHHHHhc-CccceEEEEccCCcc----cCc
Confidence 899999999987776654 555 677778889988876655442 24444432 11233332 222111 123
Q ss_pred eeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 182 LAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 182 ~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
++.++.+ +++..+.+.++++.+|+ ++++++ .|. ++|+++. ..++|++.+++. |++++++.+++
T Consensus 461 lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 461 LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LVNRVLF----PYFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hhhHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3444444 89999999999999999 777777 443 3455443 458999999886 99999998887
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-14 Score=136.10 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=76.4
Q ss_pred CCeEEEEccChhhHHHHHHHHH-CCCeEEEEe---CCcccchhH-HhcC------------------C-cccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN-AGYTVTVFN---RTLSKAQPL-LDIG------------------A-HLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~-~g~~V~~~d---r~~~~~~~~-~~~g------------------~-~~~~~~~~~~~ 104 (351)
||||+|||+|+||+++|..|++ +|++|++|+ |++++++.+ .+.| + ..++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 5899999999999999999988 599999999 877777663 3322 1 14567788888
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++|+||+|| ++...++++. ++.+.+.++++|+++.++
T Consensus 82 ~aD~Vilav-~~~~~~~v~~----~l~~~l~~~~ivv~~~~~ 118 (404)
T 3c7a_A 82 GADVVILTV-PAFAHEGYFQ----AMAPYVQDSALIVGLPSQ 118 (404)
T ss_dssp TCSEEEECS-CGGGHHHHHH----HHTTTCCTTCEEEETTCC
T ss_pred CCCEEEEeC-chHHHHHHHH----HHHhhCCCCcEEEEcCCC
Confidence 999999999 7788899998 898888889999986443
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=127.01 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=114.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
+..|||+|||+|.||++|+..|.++|++|++|++. ++ +.++| |+|| ++..+.+++.
T Consensus 4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilav-P~~ai~~vl~-- 59 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVI-DAHGVEGYVE-- 59 (232)
T ss_dssp CCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEE-CSSCHHHHHH--
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEE-cHHHHHHHHH--
Confidence 34589999999999999999999999999999983 12 46788 9999 5558899998
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~ 205 (351)
++.+.+.++++|+|++.+.+. .+.+.+...++.|+.. |+.+. ...+.+++++..+.++++++.+|.
T Consensus 60 --~l~~~l~~g~ivvd~sgs~~~---~vl~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~ 126 (232)
T 3dfu_A 60 --KLSAFARRGQMFLHTSLTHGI---TVMDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGG 126 (232)
T ss_dssp --HHHTTCCTTCEEEECCSSCCG---GGGHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTC
T ss_pred --HHHHhcCCCCEEEEECCcCHH---HHHHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCC
Confidence 888888999999998754332 2222233467888864 87643 245556688889999999999998
Q ss_pred -eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 206 -VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK 242 (351)
Q Consensus 206 -~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~ 242 (351)
++++++.....+. +.-...+-...+..++..+.+.
T Consensus 127 ~vv~~~~~~hd~~~--AAvsh~nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 127 SIVEIADDKRAQLA--AALTYAGFLSTLQRDASYFLDE 162 (232)
T ss_dssp EECCCCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765444442 2222344555667777775543
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=132.00 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=124.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.|||+|||+|.||.+++..|.+.|++|++++|++++ .+...+.|+... ++++++.++|+||+|| ++....+++..
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilav-p~~~~~~v~~~-- 91 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILT-PDEFQGRLYKE-- 91 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECS-CHHHHHHHHHH--
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeC-CcHHHHHHHHH--
Confidence 378999999999999999999999999999998765 455555687766 8888899999999999 66666777741
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchh-----hccCceeEEe---cCCHHHHHHHHH
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRG-----AKTGTLAIFA---GGDESVVQKLNP 198 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~-----~~~g~~~~~~---~g~~~~~~~v~~ 198 (351)
++.+.+.++++|++++ + ... .+.......++.++.. |..+.... ...|...+++ ..+++..+.+..
T Consensus 92 -~i~~~l~~~~ivi~~~-g-v~~--~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~ 166 (338)
T 1np3_A 92 -EIEPNLKKGATLAFAH-G-FSI--HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALS 166 (338)
T ss_dssp -HTGGGCCTTCEEEESC-C-HHH--HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHH
T ss_pred -HHHhhCCCCCEEEEcC-C-chh--HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHH
Confidence 4667788899999874 3 221 2222111235556654 63333211 1124434433 236778889999
Q ss_pred HHHhhCc----eEEcCCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 199 LFALMGK----VNYMGGSGKGQFAKLANQ-ITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 199 ll~~~g~----~~~~g~~g~a~~~kl~~n-~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
+++.+|. ++.+.............+ .+......++..++..+...|++++..
T Consensus 167 l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 167 YACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999998 444442222222223333 222223334444455556789998765
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-14 Score=127.92 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=134.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH-----------hcC--------------CcccCCHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-----------DIG--------------AHLADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~-----------~~g--------------~~~~~~~~~~~ 103 (351)
..||+|||+|.||..||..++.+|++|++||++++.++... +.| +..++++++++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 46899999999999999999999999999999987543321 111 34467888889
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCce
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTL 182 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~ 182 (351)
+++|+|+.|+|...+++.-+.. ++...+.+++++-+.+++.+. .++.+.+..+ -+++.. +..+.+. -.+
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~---~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~p-~r~ig~HffNP~~~----m~L 155 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIFA---QLDSIVDDRVVLSSSSSCLLP--SKLFTGLAHV-KQCIVAHPVNPPYY----IPL 155 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHHH---HHHTTCCSSSEEEECCSSCCH--HHHHTTCTTG-GGEEEEEECSSTTT----CCE
T ss_pred ccCcEEeeccccHHHHHHHHHH---HHHHHhhhcceeehhhhhccc--hhhhhhccCC-CcEEEecCCCCccc----cch
Confidence 9999999999988888765553 676777788777766665443 3555554432 233332 2222211 245
Q ss_pred eEEecC---CHHHHHHHHHHHHhhCc-eEEc-CC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 018694 183 AIFAGG---DESVVQKLNPLFALMGK-VNYM-GG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 183 ~~~~~g---~~~~~~~v~~ll~~~g~-~~~~-g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 256 (351)
+.++.+ ++++.+.+..+++.+|+ ++.+ .+ .|. . +|. ....++.|++.+.+..+.+++++..++..
T Consensus 156 VEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGF--i---~NR----l~~~~~~EA~~lv~eGvas~edID~~~~~ 226 (319)
T 3ado_A 156 VELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGF--V---LNR----LQYAIISEAWRLVEEGIVSPSDLDLVMSD 226 (319)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTT--T---HHH----HHHHHHHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCE--e---HHH----HHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 555555 88999999999999998 5444 44 333 2 122 24456889999999999999999988876
Q ss_pred CC
Q 018694 257 GA 258 (351)
Q Consensus 257 ~~ 258 (351)
+.
T Consensus 227 g~ 228 (319)
T 3ado_A 227 GL 228 (319)
T ss_dssp TH
T ss_pred CC
Confidence 65
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=127.42 Aligned_cols=199 Identities=18% Similarity=0.179 Sum_probs=127.6
Q ss_pred CeEEEEccChhhHHHHHHHHHC------CCeEEEEeCCcc-cchhHHhcCCcc----cCCHHHhhcCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA------GYTVTVFNRTLS-KAQPLLDIGAHL----ADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~------g~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
+||+|||+|.||.++|.+|.++ |++|++.+++.+ ..+...+.|+.. ..++.+++.++|+||+++ ++..
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV-P~~~ 133 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI-SDAA 133 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS-CHHH
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC-ChHH
Confidence 7899999999999999999998 999887776644 344455668765 268899999999999999 5565
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH--HHhcCCCcEEec-cCCCCch-------h---hccCceeEE
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA--AASSKNCSAIDA-PVSGGDR-------G---AKTGTLAIF 185 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~--~~~~~~~~~v~~-pv~~~~~-------~---~~~g~~~~~ 185 (351)
..+++. ++.+.++++++| ..+.|.. ...+.+ .....++.++.. |+.++.. + ...|....+
T Consensus 134 ~~eVl~----eI~p~LK~GaIL-s~AaGf~--I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~li 206 (525)
T 3fr7_A 134 QADNYE----KIFSHMKPNSIL-GLSHGFL--LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 206 (525)
T ss_dssp HHHHHH----HHHHHSCTTCEE-EESSSHH--HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEE
T ss_pred HHHHHH----HHHHhcCCCCeE-EEeCCCC--HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEE
Confidence 667888 888899999885 4554422 122332 122346777765 8887765 2 013443233
Q ss_pred e-cC--CHHHHHHHHHHHHhhCceEE-cCCccHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhc
Q 018694 186 A-GG--DESVVQKLNPLFALMGKVNY-MGGSGKGQFAKLA-NQITIATTMVGLVEGMV-YAHKAGLNVELFLNAIST 256 (351)
Q Consensus 186 ~-~g--~~~~~~~v~~ll~~~g~~~~-~g~~g~a~~~kl~-~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~ 256 (351)
+ .. +.+..+.+..++..+|.... -...-...-..+. ......+....+.|+.. .+.+.|++++.++.....
T Consensus 207 Av~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~q 283 (525)
T 3fr7_A 207 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVE 283 (525)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3 23 45788999999999998322 1221111111111 11112222223345554 788899999887766443
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-15 Score=139.87 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=103.2
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcccchhHH
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPLL 89 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~~ 89 (351)
....+.+++|...+...... . ++ +..++|+|||+|.||..++..|.+. |+ +|.+|||++++.+.+.
T Consensus 110 d~~~lt~~rT~a~~~la~~~---l----a~-----~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~ 177 (312)
T 2i99_A 110 DGNVITAKRTAAVSAIATKF---L----KP-----PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFA 177 (312)
T ss_dssp ECHHHHHHHHHHHHHHHHHH---H----SC-----TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHH---h----CC-----CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 56678899998776555421 1 11 1237899999999999999999875 76 8999999999988887
Q ss_pred hc-C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 90 DI-G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 90 ~~-g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+. + +..+++++++++++|+|++|+|. .+.++. . +.+.++++|+++++..|.. .++.+.+..++..|+
T Consensus 178 ~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v~~----~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~v 247 (312)
T 2i99_A 178 DTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPILF----G--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYV 247 (312)
T ss_dssp HHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCCBC----G--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEE
T ss_pred HHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcccC----H--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEE
Confidence 76 5 67788999999999999999963 233333 2 4678899999998877754 566666666688999
Q ss_pred ec
Q 018694 167 DA 168 (351)
Q Consensus 167 ~~ 168 (351)
+.
T Consensus 248 D~ 249 (312)
T 2i99_A 248 DS 249 (312)
T ss_dssp SC
T ss_pred CC
Confidence 94
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=117.68 Aligned_cols=112 Identities=16% Similarity=0.283 Sum_probs=91.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..+||||||+|.||..+|+.|...|++|++||+++++.+...+.|+... ++++++.++|+|++|+|.+..++.++..
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~-- 230 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNK-- 230 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSH--
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCH--
Confidence 3479999999999999999999999999999998876666655576665 8889999999999999877666666531
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
++.+.+++++++|+++++.+...+.+.+.+.+.++
T Consensus 231 -~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i 265 (330)
T 2gcg_A 231 -DFFQKMKETAVFINISRGDVVNQDDLYQALASGKI 265 (330)
T ss_dssp -HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred -HHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCc
Confidence 44556788999999999988777888888876444
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=115.47 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=93.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.|...|++|++|||+++..+. ....+++++++.++|+|++|+|...+++.++..
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--- 193 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMVNS--- 193 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH---
T ss_pred cchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhhhH---
Confidence 479999999999999999999999999999999765433 445668999999999999999877777776642
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
+..+.++++.++||++++.+...+.+.+.+.+.++....
T Consensus 194 ~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~ 232 (290)
T 3gvx_A 194 RLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYL 232 (290)
T ss_dssp HHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEE
T ss_pred HHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEe
Confidence 556778899999999999888889999999876555433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=121.22 Aligned_cols=114 Identities=17% Similarity=0.250 Sum_probs=97.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.|...|++|++|||++...+...+.|+...+++++++.++|+|++++|...+++.++..
T Consensus 163 ~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~-- 240 (351)
T 3jtm_A 163 EGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNK-- 240 (351)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSH--
T ss_pred cCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcH--
Confidence 347999999999999999999999999999999876666666668887789999999999999999877777766642
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+....++++.++||++.+.....+.+.+.+.+..+.
T Consensus 241 -~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 276 (351)
T 3jtm_A 241 -ELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG 276 (351)
T ss_dssp -HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred -HHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc
Confidence 555678899999999999888888999998765544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=118.09 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=91.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++|||++...+.+.. .....++++++.++|+|++|+|...+++.++..
T Consensus 136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~-- 211 (324)
T 3evt_A 136 TGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLFST-- 211 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSH--
T ss_pred cCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCH--
Confidence 3479999999999999999999999999999999766544322 123457889999999999999877777777642
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+....++++.++||++.+.+...+.+.+.+.+..+.
T Consensus 212 -~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 247 (324)
T 3evt_A 212 -ELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS 247 (324)
T ss_dssp -HHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCS
T ss_pred -HHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCce
Confidence 555678899999999999888889999999766554
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=115.23 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=94.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++|||++...+.+. +.....++++++.++|+|++++|...+++.++..
T Consensus 139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~-- 214 (324)
T 3hg7_A 139 KGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRETHHLFTA-- 214 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCT--
T ss_pred ccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHH--
Confidence 347999999999999999999999999999999875443321 1223568899999999999999878888877753
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC--cEEec
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC--SAIDA 168 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~--~~v~~ 168 (351)
+....++++.++||++.+.+...+.+.+.+.+..+ ..+|.
T Consensus 215 -~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV 256 (324)
T 3hg7_A 215 -SRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDV 256 (324)
T ss_dssp -TTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESC
T ss_pred -HHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEecc
Confidence 56677899999999999988888999999976655 34553
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-12 Score=116.39 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=92.8
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.++|||||+|.||..+|+.+. ..|++|++||+++++.+...+.|+....++++++.++|+|++|+|...+++.++..
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~-- 240 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE-- 240 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH--
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH--
Confidence 378999999999999999999 99999999999987666555557776668899999999999999877777766641
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.+++++++|+++++.+...+.+.+.+.+..+
T Consensus 241 -~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i 275 (348)
T 2w2k_A 241 -AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKL 275 (348)
T ss_dssp -HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred -HHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCc
Confidence 34556789999999999988888888888875433
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=115.68 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=91.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..+||||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .++++++.++|+|++|+|....++.++..
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~-- 224 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINE-- 224 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH--
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCH--
Confidence 3479999999999999999999999999999999876 4444556654 58889999999999999877767666631
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
++.+.+++++++|+++++.+...+.+.+.+.+..+.
T Consensus 225 -~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ 260 (334)
T 2dbq_A 225 -ERLKLMKKTAILINIARGKVVDTNALVKALKEGWIA 260 (334)
T ss_dssp -HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred -HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 445567899999999999888878888888765443
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-12 Score=115.72 Aligned_cols=109 Identities=26% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|.+|||+++.. .+.....++++++.++|+|++|+|...+++.++..
T Consensus 170 ~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~-- 242 (340)
T 4dgs_A 170 KGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDA-- 242 (340)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC----------CH--
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhH--
Confidence 34799999999999999999999999999999987652 23555678999999999999999878888877742
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+..+.++++.++|+++.+.+...+.+.+.+.+..+.
T Consensus 243 -~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~ 278 (340)
T 4dgs_A 243 -SLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIA 278 (340)
T ss_dssp -HHHHHTTTTCEEEECSCC--------------CCSS
T ss_pred -HHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence 556678899999999999888888888888765443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=119.12 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=90.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.|...|++|++||++... +...+.|+... ++++++.++|+|++|+|....++.++.
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~---- 215 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLID---- 215 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC----
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhC----
Confidence 479999999999999999999999999999998743 34445577665 889999999999999987778887776
Q ss_pred C-cccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 G-ALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~-i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+ +.+.++++++++|++++.+.....+.+.+.+..
T Consensus 216 ~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~ 250 (529)
T 1ygy_A 216 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGH 250 (529)
T ss_dssp HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSS
T ss_pred HHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCC
Confidence 4 666788999999999998888888888887543
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=110.92 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++||+++++ +...+.|+.. .++++++.++|+|++|+|...+++.++..
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~-- 216 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINE-- 216 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH--
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHHhhCCEEEEecCCChHHhhhcCH--
Confidence 3479999999999999999999999999999999876 4455557765 47889999999999999877766666631
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.++++.++|+++.+.+.....+.+.+.+..+
T Consensus 217 -~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i 251 (307)
T 1wwk_A 217 -ERLKLMKKTAILINTSRGPVVDTNALVKALKEGWI 251 (307)
T ss_dssp -HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred -HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 34556789999999999887777788888876544
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=116.83 Aligned_cols=113 Identities=20% Similarity=0.288 Sum_probs=93.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++|||++.+.+...+.|+.. .++++++.++|+|++++|...+++.++..
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~-- 220 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELFASSDFILLALPLNADTLHLVNA-- 220 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCH--
Confidence 347999999999999999999999999999999975555555556654 48999999999999999877777766642
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+....++++.++||++.+.+...+.+.+.+.+..+.
T Consensus 221 -~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~ 256 (330)
T 4e5n_A 221 -ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLG 256 (330)
T ss_dssp -HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred -HHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence 456678899999999999888888999988766554
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-12 Score=116.26 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=89.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..+||||||+|.||..+|+.|...|++|++|||+++... |.....++++++.++|+|++++|....++.++..
T Consensus 163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~-- 235 (333)
T 3ba1_A 163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHIINR-- 235 (333)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCH--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHhhH--
Confidence 347899999999999999999999999999999976532 5555678999999999999999877777777631
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.+++++++|+++++.+...+.+.+.+.+..+
T Consensus 236 -~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i 270 (333)
T 3ba1_A 236 -EVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270 (333)
T ss_dssp -HHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred -HHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCC
Confidence 34556788999999999988888889888876544
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=113.75 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=90.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++||+++++. ...+.|+.. .++++++.++|+|++|+|...+++.++..
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~-- 216 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDY-- 216 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCH--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhCH--
Confidence 34799999999999999999999999999999997663 344557664 48899999999999999877766655531
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
...+.+++++++|+++.+.+...+.+.+.+.+.++
T Consensus 217 -~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i 251 (313)
T 2ekl_A 217 -PQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKV 251 (313)
T ss_dssp -HHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCE
T ss_pred -HHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCC
Confidence 34456789999999999988888888888876443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-12 Score=115.84 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=92.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.|...|++|++||++++.. ...+.|+....++++++.++|+|++++|...+++.++..
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--- 243 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--- 243 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH---
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHH---
Confidence 4799999999999999999999999999999986542 233447766678999999999999999877777777631
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+..+.++++.++|+++++.+...+.+.+.+.+.++.
T Consensus 244 ~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~ 279 (347)
T 1mx3_A 244 FTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 279 (347)
T ss_dssp HHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred HHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc
Confidence 455678899999999999888888999988765543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-12 Score=117.69 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=94.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.+...|++|++||++.. .+...+.|+...+++++++.++|+|++++|...+++.++..
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~--- 235 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITV--- 235 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCH---
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCH---
Confidence 47999999999999999999999999999999853 34455568877779999999999999999877777766642
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+..+.++++.++|+++.+.....+.+.+.+.+..+.
T Consensus 236 ~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 271 (352)
T 3gg9_A 236 ADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPG 271 (352)
T ss_dssp HHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS
T ss_pred HHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc
Confidence 455678899999999999888888999988876554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=111.05 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=88.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.|...|++|++|||+++ +. +.....++++++.++|+|++|+|...+++.++..
T Consensus 123 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~-- 194 (303)
T 1qp8_A 123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKY-- 194 (303)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCH--
Confidence 447999999999999999999999999999999876 22 3444568899999999999999887777777642
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.+++++++||++++.+...+.+.+.+.+..+
T Consensus 195 -~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i 229 (303)
T 1qp8_A 195 -QHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 229 (303)
T ss_dssp -HHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred -HHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCc
Confidence 45567889999999999988777888888876444
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=113.22 Aligned_cols=112 Identities=15% Similarity=0.262 Sum_probs=90.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++|||++...+.+... ....++++++.++|+|++++|...+++.++..
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~-- 213 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIINS-- 213 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSH--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhccH--
Confidence 34799999999999999999999999999999997654332211 11257889999999999999878888877742
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+....++++.++|+++.+.....+.+.+.+.+..+.
T Consensus 214 -~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 249 (315)
T 3pp8_A 214 -ELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK 249 (315)
T ss_dssp -HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred -HHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc
Confidence 566778899999999999888888999988765443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=115.19 Aligned_cols=110 Identities=22% Similarity=0.323 Sum_probs=91.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.+...|++|.+|||++...+.. .|....+++++++.++|+|++++|...+++.++..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~--- 247 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDH--- 247 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCH---
T ss_pred CCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCH---
Confidence 4799999999999999999999999999999986543322 26766779999999999999999877777776642
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++||++.+.....+.+.+.+.+..+
T Consensus 248 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 282 (345)
T 4g2n_A 248 DRIAKIPEGAVVINISRGDLINDDALIEALRSKHL 282 (345)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCc
Confidence 45567889999999999988888899998876544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-12 Score=113.27 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=102.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeE-EEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTV-TVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V-~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||||||+|.||..++..|.+.|+++ .+||+++ +.+. .++++++++ .++|+|++|+|+..+.+ .+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~-~~~--- 68 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKD-YAE--- 68 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHH-HHH---
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHH-HHH---
Confidence 68999999999999999999999997 6999985 3322 577899988 68999999995554444 443
Q ss_pred CCcccCCCCCcEEEecCCCChhHH---HHHHHHHhcCCCc-EEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhh
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLA---SELSAAASSKNCS-AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM 203 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~---~~l~~~~~~~~~~-~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~ 203 (351)
. .+..|+.+++.+++..... +++.+...+.+.. +++++..++......+.. +++...+...++.++..
T Consensus 69 -~---~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 140 (236)
T 2dc1_A 69 -K---ILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQFG 140 (236)
T ss_dssp -H---HHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGTT
T ss_pred -H---HHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHcC
Confidence 2 2457888998887543322 5677766666776 678888887665554442 11111111122234445
Q ss_pred Cc-eEEcCCccHH-HHHHHHHHHHH
Q 018694 204 GK-VNYMGGSGKG-QFAKLANQITI 226 (351)
Q Consensus 204 g~-~~~~g~~g~a-~~~kl~~n~~~ 226 (351)
+. +++.|+.+.+ ...|...|...
T Consensus 141 ~~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 141 RKGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp SCEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred cceEEEeccHHHHHHHCCchHHHHH
Confidence 66 6777764333 34455555554
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=115.80 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.+...|++|++||+++...+...+.|+....++++++.++|+|++++|...+++.++..
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--- 267 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--- 267 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH---
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhH---
Confidence 47999999999999999999999999999999876655555567776678999999999999999877777766631
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+..+.++++.++|+++.+.+...+.+.+.+.+..
T Consensus 268 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 301 (393)
T 2nac_A 268 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGR 301 (393)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred HHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCC
Confidence 4556788999999999998877788988887543
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.9e-12 Score=114.88 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=90.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeC-CcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR-TLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr-~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
..++|||||+|.||..+|+.+...|++|++||+ +++. ....+.|+...+++++++.++|+|++|+|...+++.++..
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~- 222 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK- 222 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH-
Confidence 347999999999999999999999999999999 8765 3344457776668999999999999999877767766641
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
...+.+++++++|+++.+.+...+.+.+.+.+..+
T Consensus 223 --~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i 257 (320)
T 1gdh_A 223 --ATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRL 257 (320)
T ss_dssp --HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred --HHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCC
Confidence 35567889999999999877777788888875443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=111.72 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=91.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++||++++. +...+.|+.. .++++++.++|+|++|+|...+++.++..
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~-- 239 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLND-- 239 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCH--
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhCH--
Confidence 3479999999999999999999999999999998765 3444557654 48999999999999999888777777631
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.++++.++||++.+.+...+.+.+.+.+..+
T Consensus 240 -~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i 274 (335)
T 2g76_A 240 -NTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC 274 (335)
T ss_dssp -HHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE
T ss_pred -HHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCc
Confidence 45667889999999999988777888888876443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.8e-12 Score=116.49 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=94.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
..++|||||+|.||..+|+.|...|++ |++|||++...+...+.|+....++++++.++|+|++|+|....++.++..
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~- 241 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINK- 241 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCH-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCH-
Confidence 347999999999999999999999997 999999876666555667766678999999999999999887777776642
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
...+.++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 242 --~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i 276 (364)
T 2j6i_A 242 --ELLSKFKKGAWLVNTARGAICVAEDVAAALESGQL 276 (364)
T ss_dssp --HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred --HHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCC
Confidence 45567889999999999988888889998876544
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=107.38 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++|||++++.. + ...++++++.++|+|++|+|....++.++..
T Consensus 143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~-- 213 (311)
T 2cuk_A 143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNR-- 213 (311)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCH--
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCH--
Confidence 347999999999999999999999999999999976643 2 2468899999999999999877777766631
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++++.+...+.+.+.+. ..+
T Consensus 214 -~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i 247 (311)
T 2cuk_A 214 -ERLFAMKRGAILLNTARGALVDTEALVEALR-GHL 247 (311)
T ss_dssp -HHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS
T ss_pred -HHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC
Confidence 3455678999999999988777778888887 544
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-10 Score=114.15 Aligned_cols=188 Identities=15% Similarity=0.184 Sum_probs=123.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----------------------CCcccCCHHHhhcC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----------------------GAHLADSPHSLASQ 105 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----------------------g~~~~~~~~~~~~~ 105 (351)
...||+|||+|.||..||..++.+|++|+++|++++.++...+. .+...++.++ +.+
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 393 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LST 393 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGS
T ss_pred cccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-Hhh
Confidence 35799999999999999999999999999999998764332110 1233445444 679
Q ss_pred CCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEE
Q 018694 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIF 185 (351)
Q Consensus 106 ~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~ 185 (351)
||+||.||+...+++.-+.. ++...+.+++++-+.+++.+- .++.+.... .-+++..-.+..... -.++.+
T Consensus 394 aDlVIEAV~E~l~iK~~vf~---~le~~~~~~aIlASNTSsl~i--~~ia~~~~~-p~r~ig~HFfnP~~~---m~LVEv 464 (742)
T 3zwc_A 394 VDLVVEAVFEDMNLKKKVFA---ELSALCKPGAFLCTNTSALNV--DDIASSTDR-PQLVIGTHFFSPAHV---MRLLEV 464 (742)
T ss_dssp CSEEEECCCSCHHHHHHHHH---HHHHHSCTTCEEEECCSSSCH--HHHHTTSSC-GGGEEEEECCSSTTT---CCEEEE
T ss_pred CCEEEEeccccHHHHHHHHH---HHhhcCCCCceEEecCCcCCh--HHHHhhcCC-ccccccccccCCCCC---CceEEE
Confidence 99999999988888765553 677777888887776665443 355554432 223443311211111 244555
Q ss_pred ecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 186 AGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 186 ~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.+ ++++.+.+..+.+.+|+ ++.+.+ .|. . +|. ....++.|++.+.+. |.++++..+.+.
T Consensus 465 i~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pGF--i---~NR----i~~~~~~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 465 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF--V---GNR----MLAPYYNQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEECCCSTTT--T---HHH----HHHHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCCc--c---HHH----HhhHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 544 88999999999999999 666665 332 2 112 233456677766544 677776666553
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=114.14 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
..++|||||+|.||..+|+.+...|++|++|||+++. +...+.|+... ++++++.++|+|++|+|....++.++..
T Consensus 145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~-- 220 (333)
T 2d0i_A 145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINE-- 220 (333)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCH--
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCH--
Confidence 3479999999999999999999999999999999875 44444466554 7889899999999999877677766641
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
...+.++++ ++|+++++.+.....+.+.+.+..+
T Consensus 221 -~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i 254 (333)
T 2d0i_A 221 -ERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKL 254 (333)
T ss_dssp -HHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCB
T ss_pred -HHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCc
Confidence 244567789 9999999988777788888875433
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=109.87 Aligned_cols=138 Identities=18% Similarity=0.204 Sum_probs=100.0
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
+.|.+.+++|+..++...+...-. . ...+||+|||+|.||.+++..|.+.|++|++|+|++++.+.+.+.
T Consensus 102 ~~g~~~g~nTd~~G~~~~l~~~~~-----~-----~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~ 171 (275)
T 2hk9_A 102 ENGKAYGYNTDWIGFLKSLKSLIP-----E-----VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK 171 (275)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHCT-----T-----GGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT
T ss_pred eCCEEEeecCCHHHHHHHHHHhCC-----C-----cCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 567789999999998888754211 0 112689999999999999999999999999999999888777654
Q ss_pred -CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 92 -GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 92 -g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
|+...++..+.+.++|+||.|+|.+.. .++.. .+ .+.+.++++++|++. .. ..+.+...+.++.++++
T Consensus 172 ~g~~~~~~~~~~~~~aDiVi~atp~~~~-~~~~~----~i~~~~l~~g~~viDv~~-~~---t~ll~~a~~~g~~~v~g 241 (275)
T 2hk9_A 172 FPLEVVNSPEEVIDKVQVIVNTTSVGLK-DEDPE----IFNYDLIKKDHVVVDIIY-KE---TKLLKKAKEKGAKLLDG 241 (275)
T ss_dssp SCEEECSCGGGTGGGCSEEEECSSTTSS-TTCCC----SSCGGGCCTTSEEEESSS-SC---CHHHHHHHHTTCEEECS
T ss_pred cCCeeehhHHhhhcCCCEEEEeCCCCCC-CCCCC----CCCHHHcCCCCEEEEcCC-Ch---HHHHHHHHHCcCEEECC
Confidence 555666788888899999999965532 11111 12 234678999999997 22 23444444567777654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=111.34 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=90.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.+...|++|++||++. +.+...+.|+.. .++++++.++|+|++++|...+++.++..
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~--- 250 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGA--- 250 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCH---
T ss_pred CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCH---
Confidence 4799999999999999999999999999999985 334444557654 58999999999999999888888877753
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+....++++.++||++.+.....+.+.+.+.+..+.
T Consensus 251 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 286 (365)
T 4hy3_A 251 EAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV 286 (365)
T ss_dssp HHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE
T ss_pred HHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce
Confidence 566778899999999999888888999998765443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=114.38 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=87.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH----HHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD----VRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~----~~~v~~~ 125 (351)
++|||||+|.||..+|+.+...|++|.+||++.+... +.....++++++.++|+|++++|...+ ++.++..
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~ 194 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADE 194 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCH
Confidence 6899999999999999999999999999998643321 223456899999999999999987766 6666642
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+....++++.++||++.+.+...+.+.+.+.+..+.
T Consensus 195 ---~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~ 230 (381)
T 3oet_A 195 ---TLIRRLKPGAILINACRGPVVDNAALLARLNAGQPL 230 (381)
T ss_dssp ---HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCE
T ss_pred ---HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCe
Confidence 455668899999999999888888999998765543
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=110.21 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=86.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.+...|++|++||+++.... .+.....+++++++++|+|++++|...+++.++..
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~--- 228 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITE--- 228 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCBCH---
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCH---
Confidence 47999999999999999999999999999999854321 23455678999999999999999888888777642
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 229 ~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i 263 (416)
T 3k5p_A 229 AKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHL 263 (416)
T ss_dssp HHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred HHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCc
Confidence 45567889999999999998888999999876544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-11 Score=110.58 Aligned_cols=108 Identities=13% Similarity=0.196 Sum_probs=88.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.+...|++|++|||+++.. .+.+... .++++++.++|+|++++|...+++.++..
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~--- 220 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGE--- 220 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH---
T ss_pred CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhH---
Confidence 3799999999999999999999999999999987541 1223333 48999999999999999877777766642
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++||++.+.....+.+.+.+.+..+
T Consensus 221 ~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i 255 (343)
T 2yq5_A 221 KQLKEMKKSAYLINCARGELVDTGALIKALQDGEI 255 (343)
T ss_dssp HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred HHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCC
Confidence 45566889999999999988888899998876544
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-11 Score=106.40 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=98.9
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.+++.+++|+|+..++.+.+...-... ..+++.|||+|.+|.+++..|.+.|. +|++++|++++.+.+
T Consensus 88 ~~~~g~l~G~NTD~~G~~~~L~~~~~~l----------~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l 157 (277)
T 3don_A 88 LVKDGKWIGYNTDGIGYVNGLKQIYEGI----------EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNW 157 (277)
T ss_dssp EEETTEEEEECCHHHHHHHHHHHHSTTG----------GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred EecCCEEEEECChHHHHHHHHHHhCCCc----------CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 3467889999999999999886431111 12579999999999999999999999 899999999888776
Q ss_pred HhcC-CcccCCHHHhhcCCCEEEEecCChhH--HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 89 LDIG-AHLADSPHSLASQSDVVFSIVGYPSD--VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 89 ~~~g-~~~~~~~~~~~~~~DiIi~~vp~~~~--~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
.... .....+..+.+.++|+||.|+|.+.. ....+. ...+.++.+++|+... |..+ .+.+..++.|+.+
T Consensus 158 a~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~------~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~ 229 (277)
T 3don_A 158 SLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVIS------LNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPI 229 (277)
T ss_dssp CSCCEEECHHHHHHTGGGCSEEEECCC-------CCSSC------CTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCE
T ss_pred HHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCC------HHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEE
Confidence 5431 11233455667789999999965421 111111 2346788999999887 4333 4666666778877
Q ss_pred Eec
Q 018694 166 IDA 168 (351)
Q Consensus 166 v~~ 168 (351)
+++
T Consensus 230 ~~G 232 (277)
T 3don_A 230 YNG 232 (277)
T ss_dssp ECT
T ss_pred eCC
Confidence 765
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-11 Score=111.24 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=90.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.+...|++|++||+++.... .++....++++++.++|+|++++|...+++.++..
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--- 217 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--- 217 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH---
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHHhcCCEEEEccCCChHHHHHhhH---
Confidence 47999999999999999999999999999999765321 13555678999999999999999888888877742
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 218 ~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i 252 (404)
T 1sc6_A 218 KEISLMKPGSLLINASRGTVVDIPALADALASKHL 252 (404)
T ss_dssp HHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE
T ss_pred HHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCc
Confidence 45567889999999999988888889998875443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=102.65 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=97.9
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
+.+.+.+++|+..++...+.... - .... ||+|||+|.||.+++..|.+.|++|++++|++++.+.+.+.
T Consensus 90 ~~g~~~g~ntd~~g~~~~l~~~~-----~-----~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~ 158 (263)
T 2d5c_A 90 VEGRLFGFNTDAPGFLEALKAGG-----I-----PLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE 158 (263)
T ss_dssp ETTEEEEECCHHHHHHHHHHHTT-----C-----CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred cCCeEEEeCCCHHHHHHHHHHhC-----C-----CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56677899998888877765321 0 1123 79999999999999999999999999999998887777654
Q ss_pred -CCcccCCHHHhhcCCCEEEEecCChhH--HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 92 -GAHLADSPHSLASQSDVVFSIVGYPSD--VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 92 -g~~~~~~~~~~~~~~DiIi~~vp~~~~--~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+.. .++.+++ .++|+||+|+|.+.. +...+. .+.+.++++++|++.. |... .+.+.+.+.++.++++
T Consensus 159 ~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~------~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~g 228 (263)
T 2d5c_A 159 FGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP------AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQTG 228 (263)
T ss_dssp HTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC------GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred hccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC------HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEECc
Confidence 544 4677777 899999999966532 111111 2346788999999876 4332 3666666667777644
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.5e-11 Score=109.28 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=88.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.+...|++|++||+++++. +. .++...+++++++.++|+|++|+|...+++.++..
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~--- 219 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LE-KKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND--- 219 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HH-HTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH---
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HH-hhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhH---
Confidence 3789999999999999999999999999999987653 22 23444558899999999999999877777766631
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
...+.++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 220 ~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i 254 (333)
T 1j4a_A 220 ESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKI 254 (333)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCc
Confidence 34456789999999999988888899998876544
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=109.52 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=86.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH----HHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD----VRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~----~~~v~~ 124 (351)
.++|||||+|.||..+|+.|...|++|++||++++.. ..+.. ..++++++.++|+|++|+|...+ +..++.
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~ 190 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD 190 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC
Confidence 3789999999999999999999999999999875432 22332 46899999999999999987766 666653
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
. +..+.++++.++|+++++.+...+.+.+.+.+..+
T Consensus 191 ~---~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i 226 (380)
T 2o4c_A 191 E---PRLAALRPGTWLVNASRGAVVDNQALRRLLEGGAD 226 (380)
T ss_dssp H---HHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCC
T ss_pred H---HHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCC
Confidence 2 45567889999999999988888889998876543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=107.51 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.+...|++|++||+++... + +.... ..++++++.++|+|++|+|...+++.++..
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~~--- 217 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINE--- 217 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCH---
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhCH---
Confidence 3789999999999999999999999999999987643 1 12233 348899999999999999888877776631
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 218 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i 252 (333)
T 1dxy_A 218 AAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252 (333)
T ss_dssp HHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred HHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCc
Confidence 45567889999999999988888899998876443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=105.84 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=87.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.||..+|+.+...|++|++|||++++. + +.++. ..++++++.++|+|++|+|....++.++..
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~--- 218 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTR--- 218 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCH---
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCH---
Confidence 4789999999999999999999999999999987653 1 22333 448899999999999999877777666531
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+.+...+.+.+.+.+.++
T Consensus 219 ~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i 253 (331)
T 1xdw_A 219 DFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKL 253 (331)
T ss_dssp HHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCc
Confidence 45566789999999999988888899998876544
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-11 Score=109.70 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=99.9
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcccchhHH
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~~ 89 (351)
..+.+++++|+..+........ + +..++|+|||+|.||..++..|.. ...+|.+|||++++.+.+.
T Consensus 104 d~~~lT~~RTaa~s~laa~~la-------~-----~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la 171 (350)
T 1x7d_A 104 ELTIATALRTAATSLMAAQALA-------R-----PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLI 171 (350)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHS-------C-----TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred cCCEEEeehhhHHHHHHHHHhc-------c-----ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 6677899999877766555221 1 113689999999999999998764 3458999999999988887
Q ss_pred hc-----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 90 DI-----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 90 ~~-----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+. | +..++++++++.++|+|++|+|... ...++. ...+.+++.|+++++..|. .+++...+..++
T Consensus 172 ~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-~~pvl~------~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a 243 (350)
T 1x7d_A 172 ANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-YATIIT------PDMLEPGMHLNAVGGDCPG-KTELHADVLRNA 243 (350)
T ss_dssp HHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-EEEEEC------GGGCCTTCEEEECSCCBTT-BEEECHHHHHTS
T ss_pred HHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-CCceec------HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcC
Confidence 65 5 3457789999999999999996542 222332 1356789999999987665 345555554556
Q ss_pred CcEEec
Q 018694 163 CSAIDA 168 (351)
Q Consensus 163 ~~~v~~ 168 (351)
..|+|.
T Consensus 244 ~v~vD~ 249 (350)
T 1x7d_A 244 RVFVEY 249 (350)
T ss_dssp EEEESS
T ss_pred cEEECC
Confidence 678876
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=88.24 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=81.5
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
.+|+|||+ |.||..++++|.+.|++|+.++++.+.+ .|...+.+++|+...+|++++|+| +..+.++++
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~- 87 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK- 87 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-
Confidence 68999999 9999999999999999966666654322 478888999999889999999995 788888887
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++.. ...+.+++..++. .+++.+.+++.|+.+++
T Consensus 88 ---~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 88 ---EAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp ---HHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEEC
T ss_pred ---HHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEc
Confidence 6554 3456677766543 46777777777888885
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=99.09 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhc----------CCcc-cCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDI----------GAHL-ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~----------g~~~-~~~~~~~~~~~DiIi~~vp~ 115 (351)
||||+|||+|.||.+++..|+++| ++|++||+++++++.+... .+.. .++. +.+.++|+||+|++.
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~ 79 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN 79 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 589999999999999999999999 7999999998877665431 1233 4566 677899999999976
Q ss_pred hhH-------------------HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PSD-------------------VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~~-------------------~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.. +++++. .+.++. ++.+++..+|.
T Consensus 80 ~~~~~~~~g~~r~~l~~~n~~i~~~i~~----~i~~~~-~~~~ii~~tNp 124 (309)
T 1hyh_A 80 IKLQQDNPTGDRFAELKFTSSMVQSVGT----NLKESG-FHGVLVVISNP 124 (309)
T ss_dssp GGGTC-------CTTHHHHHHHHHHHHH----HHHHTT-CCSEEEECSSS
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCcEEEEEcCc
Confidence 553 466776 666554 57777778875
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=95.51 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=97.0
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
.+++.+++|+||..++.+.+... + .+|+.|||+|.+|.+++..|.+.|.+|++++|++++.+.+.+
T Consensus 94 ~~~g~l~G~NTD~~Gf~~~L~~~-----~---------~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~ 159 (269)
T 3phh_A 94 LENDELVGYNTDALGFYLSLKQK-----N---------YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQR 159 (269)
T ss_dssp EETTEEEEECCHHHHHHHHCC-----------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHH
T ss_pred eeCCEEEEecChHHHHHHHHHHc-----C---------CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788999999999998887431 1 268999999999999999999999999999999999888874
Q ss_pred cCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 91 IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 91 ~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.++... +.+++ .++|+||.|+|-+..-...+.. . .+...+.++.+++|+... |.+ .+.+...+.|+.++++
T Consensus 160 ~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~~-~-~l~~~l~~~~~v~D~vY~-P~T--~ll~~A~~~G~~~~~G 230 (269)
T 3phh_A 160 LGCDCF-MEPPK-SAFDLIINATSASLHNELPLNK-E-VLKGYFKEGKLAYDLAYG-FLT--PFLSLAKELKTPFQDG 230 (269)
T ss_dssp HTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSCH-H-HHHHHHHHCSEEEESCCS-SCC--HHHHHHHHTTCCEECS
T ss_pred CCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCCh-H-HHHhhCCCCCEEEEeCCC-Cch--HHHHHHHHCcCEEECC
Confidence 454433 33343 3899999999754321101110 0 011134578899999987 433 3666666778877765
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.1e-10 Score=100.42 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=99.6
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~ 90 (351)
+.+.+.+++|+..++...+...... . ...++|.|||+|.||.+++..|.+.|. +|++++|++++.+.+.+
T Consensus 113 ~~g~l~g~nTd~~G~~~~l~~~~~~----~-----l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~ 183 (297)
T 2egg_A 113 NDGRLVGYNTDGLGYVQALEEEMNI----T-----LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVR 183 (297)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHTTC----C-----CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred cCCeEeeccCCHHHHHHHHHHhCCC----C-----CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 5677899999999999888543100 0 113689999999999999999999998 99999999998887766
Q ss_pred c-CC---ccc--CCHHHhhcCCCEEEEecCChhHH--HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 91 I-GA---HLA--DSPHSLASQSDVVFSIVGYPSDV--RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 91 ~-g~---~~~--~~~~~~~~~~DiIi~~vp~~~~~--~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
. +. ... ++..+.+.++|+||.|+|.+..- +.+.. . ...+.++.+++|++.. |..+ .+.+...+.|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i----~-~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G 256 (297)
T 2egg_A 184 EGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPL----S-LERLRPGVIVSDIIYN-PLET-KWLKEAKARG 256 (297)
T ss_dssp HSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSS----C-CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTT
T ss_pred HhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCC----C-HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCc
Confidence 5 22 221 24456677899999999655421 10110 1 1346688999999985 5443 3556666678
Q ss_pred CcEEec
Q 018694 163 CSAIDA 168 (351)
Q Consensus 163 ~~~v~~ 168 (351)
+.++++
T Consensus 257 ~~~v~G 262 (297)
T 2egg_A 257 ARVQNG 262 (297)
T ss_dssp CEEECS
T ss_pred CEEECC
Confidence 777754
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-09 Score=81.43 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=73.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcCCccc-------CCHHHhhcCCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
+++||+|+|+|.||..++..|.+.| ++|++++|++++.+.+...++... .+..+.+.++|+||.|+| ....
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~-~~~~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP-FFLT 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC-GGGH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC-chhh
Confidence 4579999999999999999999999 899999999988877765443221 233456678999999994 4444
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHH
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAA 158 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~ 158 (351)
..++. .. ...+..+++++.. ....+.+.+..
T Consensus 83 ~~~~~----~~---~~~g~~~~~~~~~-~~~~~~~~~~~ 113 (118)
T 3ic5_A 83 PIIAK----AA---KAAGAHYFDLTED-VAATNAVRALV 113 (118)
T ss_dssp HHHHH----HH---HHTTCEEECCCSC-HHHHHHHHHHH
T ss_pred HHHHH----HH---HHhCCCEEEecCc-HHHHHHHHHHH
Confidence 44554 22 2356778887765 55666665544
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=97.14 Aligned_cols=139 Identities=22% Similarity=0.243 Sum_probs=96.2
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~ 90 (351)
++|.+++|+|+..++.+.+... .. . ...+++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+.+
T Consensus 99 ~~g~l~G~NTD~~G~~~~L~~~---~~--~-----l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~ 168 (281)
T 3o8q_A 99 DDGEILGDNTDGEGLVQDLLAQ---QV--L-----LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE 168 (281)
T ss_dssp TTSCEEEECCHHHHHHHHHHHT---TC--C-----CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEecHHHHHHHHHHHh---CC--C-----ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 5788999999999999988432 11 1 112689999999999999999999996 99999999988877765
Q ss_pred c-C----CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-
Q 018694 91 I-G----AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS- 164 (351)
Q Consensus 91 ~-g----~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~- 164 (351)
. + +. ..+.+++..++|+||.|+|.+..-+.... . ...+.++.+++|+... |..+. +.+...+.|+.
T Consensus 169 ~~~~~~~~~-~~~~~~l~~~aDiIInaTp~gm~~~~~~l----~-~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~ 240 (281)
T 3o8q_A 169 LVAAYGEVK-AQAFEQLKQSYDVIINSTSASLDGELPAI----D-PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQ 240 (281)
T ss_dssp HHGGGSCEE-EEEGGGCCSCEEEEEECSCCCC----CSC----C-GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSE
T ss_pred HhhccCCee-EeeHHHhcCCCCEEEEcCcCCCCCCCCCC----C-HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCE
Confidence 4 1 12 22455555789999999976643221111 1 1235678899999876 43333 44555667876
Q ss_pred EEec
Q 018694 165 AIDA 168 (351)
Q Consensus 165 ~v~~ 168 (351)
++++
T Consensus 241 ~~~G 244 (281)
T 3o8q_A 241 AIDG 244 (281)
T ss_dssp EECT
T ss_pred EECc
Confidence 6654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-09 Score=82.47 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=63.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcc-cC---CHHH----hhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHL-AD---SPHS----LASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~-~~---~~~~----~~~~~DiIi~~vp~~~~~ 119 (351)
.|||+|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+. ++.. .. +.+. .+.++|+||+|+|.+...
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 4799999999999999999999999999999999888777654 5432 11 2222 146799999999655433
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
. .+. .+...+.++++++..+
T Consensus 84 ~-~~~----~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 84 L-MSS----LLAKSYGINKTIARIS 103 (140)
T ss_dssp H-HHH----HHHHHTTCCCEEEECS
T ss_pred H-HHH----HHHHHcCCCEEEEEec
Confidence 3 232 2333355666666543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.1e-09 Score=96.39 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=82.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
+|+||+|||+|.||..++..|.+. +++++ ++|+++++.+.+.+. |+. +++.+++++ ++|+|++|+|+..+.+.+
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 80 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI 80 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence 467999999999999999999885 67766 789999988887765 777 889999987 799999999777766655
Q ss_pred hhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+ ..++ +++.-. +..+...+++.+...+.++.+.
T Consensus 81 ~~----al----~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (331)
T 4hkt_A 81 ER----FA----RAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM 118 (331)
T ss_dssp HH----HH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HH----HH----HcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 44 22 2344 444322 3457777788887776676554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=97.01 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=82.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--cCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--ADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++|+|||+|.||..+++.+...|++|++|||++++.+.+.+.|... ..++++++.++|+|++++|....-+.
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~----- 231 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMILNQT----- 231 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHH-----
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhhCHH-----
Confidence 37899999999999999999999999999999987766665556543 35788888999999999965221122
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
....++++.++||++.+..... + +.....|+.+++.|..
T Consensus 232 ---~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~ 270 (300)
T 2rir_A 232 ---VLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGL 270 (300)
T ss_dssp ---HHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCH
T ss_pred ---HHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCC
Confidence 2234678999999998633321 2 3334457777777644
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=87.79 Aligned_cols=87 Identities=20% Similarity=0.380 Sum_probs=69.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
+||+|||+|.||..++..|...|++|++++|++++.+.+.+. +.. ..++..+.+.++|+||.|+|.+.. ++.
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~~-- 96 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IVE-- 96 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SBC--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---Eee--
Confidence 689999999999999999999999999999999988776654 433 456788888999999999965521 111
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
...+.++.++++++.
T Consensus 97 ----~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 97 ----ERSLMPGKLFIDLGN 111 (144)
T ss_dssp ----GGGCCTTCEEEECCS
T ss_pred ----HHHcCCCCEEEEccC
Confidence 134567889999875
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-09 Score=94.83 Aligned_cols=110 Identities=22% Similarity=0.246 Sum_probs=81.7
Q ss_pred CCeEEEEccChhhHH-HHHHHHH-CCCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLN-AGYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++||||||+|.||.. ++..|.+ .+++++ ++|+++++.+.+.+. |+..+++.+++++++|+|++|+|+..+.+.+..
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~ 85 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKI 85 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHH
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHH
Confidence 479999999999996 8888876 466766 889999998888765 777789999999999999999977766665443
Q ss_pred CCCCCcccCCCCCc-EEEe-cCCCChhHHHHHHHHHhcCCCcEE
Q 018694 125 HPSSGALSGLRPGG-IIVD-MTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 125 ~~~~~i~~~l~~~~-~ii~-~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+ ..|+ +++. -.+..+...+++.+...+.++.+.
T Consensus 86 ----al----~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 86 ----LL----NLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp ----HH----HTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred ----HH----HCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22 2344 4443 233456777778777766665544
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=95.52 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=96.9
Q ss_pred hh-ccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 11 LR-SRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 11 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
.+ +|.+++|+|+..++.+.+..... . ....++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+
T Consensus 98 ~~~~g~l~G~NTD~~G~~~~l~~~~~-----~-----l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l 167 (283)
T 3jyo_A 98 IDATGHTTGHNTDVSGFGRGMEEGLP-----N-----AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167 (283)
T ss_dssp ECTTSCEEEECHHHHHHHHHHHHHCT-----T-----CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred ECCCCeEEEecCCHHHHHHHHHHhCc-----C-----cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 34 78999999999999998864321 1 112579999999999999999999998 799999999887776
Q ss_pred Hhc------C--CcccC--CHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHH
Q 018694 89 LDI------G--AHLAD--SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAA 158 (351)
Q Consensus 89 ~~~------g--~~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~ 158 (351)
.+. + +...+ +.++.+.++|+||.|+|-...-..-.. --...+.++.+++|+.-....+ .+.+..
T Consensus 168 a~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~p----i~~~~l~~~~~v~DlvY~P~~T--~ll~~A 241 (283)
T 3jyo_A 168 ADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTA----FDVSCLTKDHWVGDVVYMPIET--ELLKAA 241 (283)
T ss_dssp HHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCS----SCGGGCCTTCEEEECCCSSSSC--HHHHHH
T ss_pred HHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCC----CCHHHhCCCCEEEEecCCCCCC--HHHHHH
Confidence 543 1 11222 667777889999999964321110000 0113456788999988753222 333444
Q ss_pred hcCCCcEEec
Q 018694 159 SSKNCSAIDA 168 (351)
Q Consensus 159 ~~~~~~~v~~ 168 (351)
++.|+.++++
T Consensus 242 ~~~G~~~~~G 251 (283)
T 3jyo_A 242 RALGCETLDG 251 (283)
T ss_dssp HHHTCCEECT
T ss_pred HHCcCeEeCc
Confidence 4557766654
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-09 Score=86.67 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=79.7
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCc--ccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTL--SKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~--~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|+|||+ |.||..++++|.+.|++|+.++++. +.+ .|...+.+++++...+|++++|+| +..+.+++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~ 87 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRN-SEAAWGVA 87 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSC-STHHHHHH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHH
Confidence 57999999 8999999999999999976666654 222 478888899998889999999995 67888888
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
. ++.. ...+.+++..++. .+++.+.+.+.|+.++
T Consensus 88 ~----~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 88 Q----EAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVV 121 (145)
T ss_dssp H----HHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEE
T ss_pred H----HHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEE
Confidence 7 6554 3455677765433 5678888888898888
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-09 Score=96.52 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=91.2
Q ss_pred ccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-CCc
Q 018694 17 HSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-GAH 94 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g~~ 94 (351)
++|+||..++.+.+... . . .. ||+|||+|.||.+++..|.+.|. +|++++|++++.+.+.+. +..
T Consensus 89 ~G~NTD~~G~~~~l~~~-------~---~--~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~ 155 (253)
T 3u62_A 89 KGYNTDWVGVVKSLEGV-------E---V--KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIF 155 (253)
T ss_dssp EEECCHHHHHHHHTTTC-------C---C--CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEE
T ss_pred EEEcchHHHHHHHHHhc-------C---C--CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccC
Confidence 89999999998887432 1 1 12 79999999999999999999998 899999999887776654 222
Q ss_pred ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-EEec
Q 018694 95 LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS-AIDA 168 (351)
Q Consensus 95 ~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~-~v~~ 168 (351)
...+..+.+.++|+||.|+|....-. .. .+ ...+.++.+++|+... +. .+.+...+.|+. ++++
T Consensus 156 ~~~~~~~~~~~aDiVInatp~gm~p~--~~----~i~~~~l~~~~~V~Divy~-~T---~ll~~A~~~G~~~~~~G 221 (253)
T 3u62_A 156 SLDQLDEVVKKAKSLFNTTSVGMKGE--EL----PVSDDSLKNLSLVYDVIYF-DT---PLVVKARKLGVKHIIKG 221 (253)
T ss_dssp EGGGHHHHHHTCSEEEECSSTTTTSC--CC----SCCHHHHTTCSEEEECSSS-CC---HHHHHHHHHTCSEEECT
T ss_pred CHHHHHhhhcCCCEEEECCCCCCCCC--CC----CCCHHHhCcCCEEEEeeCC-Cc---HHHHHHHHCCCcEEECC
Confidence 34566777889999999996432100 01 11 1235688999999977 32 333333445766 6644
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.1e-09 Score=95.23 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
.++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.++ |+ ..+++.+++++ ++|+|++|+|+..+.+.
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 83 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSA 83 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHH
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHH
Confidence 457999999999999999999884 66766 789999988887765 66 57889999987 79999999977766665
Q ss_pred HhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEEec
Q 018694 122 VLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+.. .+ ..|+ +++.-. +......+++.+...+.++.+..+
T Consensus 84 ~~~----al----~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 124 (330)
T 3e9m_A 84 AKL----AL----SQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEA 124 (330)
T ss_dssp HHH----HH----HTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHH----HH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 544 22 2333 444332 344677778888777667655433
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=95.58 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHC--CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNA--GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~--g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
..|+||+|||+|.||..++..|.+. +++++ ++|+++++.+.+.+. |+..+++.+++++ ++|+|++|+|+..+.+
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 90 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPT 90 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHH
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3568999999999999999999886 67755 889999988887665 8888999999986 7999999997776665
Q ss_pred HHhhCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 121 HVLLHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+.. .+ ..++.|+ .-. ..+....+++.+...+.++.+.
T Consensus 91 ~~~~----al----~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 91 QSIE----CS----EAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp HHHH----HH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHH----HH----HCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 4443 22 2444443 221 3446667777777766665554
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=94.75 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=83.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
.|+||+|||+|.||..++..|.+. +++|+ ++|+++++.+.+.+. |...+++.+++++ ++|+|++|+|+..+.+.+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 82 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI 82 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH
Confidence 357999999999999999999885 66766 789999988887665 7788899999998 799999999777666654
Q ss_pred hhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+ ..++ +++.-. +..+...+++.+...+.++.+.
T Consensus 83 ~~----al----~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (344)
T 3euw_A 83 TR----AV----ERGIPALCEKPIDLDIEMVRACKEKIGDGASKVM 120 (344)
T ss_dssp HH----HH----HTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEE
T ss_pred HH----HH----HcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 44 22 2333 444432 3446777788887776665544
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.5e-09 Score=94.59 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=79.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
++|+|||+|.||..+++.+...|++|++|||++++.+.+.+.|.... .+.++.+.++|+|++|+|....-++.+
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~l---- 231 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVL---- 231 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBCHHHH----
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhCHHHH----
Confidence 68999999999999999999999999999999877666655566543 467788899999999996532112222
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..++++.++||++.+.... .+ +.....|+.++..|..
T Consensus 232 ----~~mk~~~~lin~ar~~~~~--~~-~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 232 ----AEMPSHTFVIDLASKPGGT--DF-RYAEKRGIKALLVPGL 268 (293)
T ss_dssp ----HHSCTTCEEEECSSTTCSB--CH-HHHHHHTCEEEECCCH
T ss_pred ----HhcCCCCEEEEecCCCCCC--CH-HHHHHCCCEEEECCCC
Confidence 2456899999999753332 12 2333346666655444
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=94.41 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=73.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHH----h------c--CCcccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLL----D------I--GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~----~------~--g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|.||..++..|+.+|+ +|++||+++++++... . . .+..+++. +.+.++|+||+|++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4799999999999999999999999 9999999987765531 0 0 13334566 678899999999932
Q ss_pred ---------------hhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH
Q 018694 116 ---------------PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA 156 (351)
Q Consensus 116 ---------------~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~ 156 (351)
....++++. ++.++. ++.+++..+|........+.+
T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~----~i~~~~-~~~iii~~sNp~~~~~~~~~~ 133 (317)
T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAE----GVKKYC-PNAFVICITNPLDVMVSHFQK 133 (317)
T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHH----HHHHHC-TTSEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHhhHHHHHHHHH----HHHHHC-CCcEEEEeCChHHHHHHHHHH
Confidence 123566776 666654 688898888853333333443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-09 Score=94.64 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHC-CCeE-EEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNA-GYTV-TVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~-g~~V-~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
+.++||+|||+|.||..++..|.+. ++++ .++|+++++.+.+.+. +..+++.+++++ ++|+|++|+|+..+.+.+
T Consensus 8 ~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 86 (315)
T 3c1a_A 8 NSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEIT 86 (315)
T ss_dssp -CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred CCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence 4468999999999999999999885 5664 5889999887776655 667788999885 799999999666655544
Q ss_pred hhCCCCCcccCCCCCc-EEEe-cCCCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGALSGLRPGG-IIVD-MTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~-~ii~-~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. . +..|+ ++++ -...+....+++.+...+.++.+.
T Consensus 87 ~~-----a---l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~ 124 (315)
T 3c1a_A 87 LA-----A---IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVW 124 (315)
T ss_dssp HH-----H---HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred HH-----H---HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 43 2 23454 4554 233456667777777766565544
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-08 Score=93.95 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=82.6
Q ss_pred CCCCeEEEEccChhhH-HHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 47 PTNTRIGWIGTGVMGR-SMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~-~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
+.++||||||+|.||. .++..|.+. +++|+ ++|+++++.+.+.++ |+..+++.+++++ +.|+|++|+|+..+.+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 104 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE 104 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3457999999999998 789999876 67765 889999988887765 8888899999986 5899999997777766
Q ss_pred HHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 121 HVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+.. .+ ..|+ +++.-- +......+++.+...+.++.+.
T Consensus 105 ~~~~----al----~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 105 WIDR----AL----RAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp HHHH----HH----HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHH----HH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 5554 22 2444 444322 3446777788887776666554
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-09 Score=95.21 Aligned_cols=101 Identities=16% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchh--HH-hcCC------cc--cCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP--LL-DIGA------HL--ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~--~~-~~g~------~~--~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|.||..++..|+..|+ +|+++|+++++++. +. ..+. .+ .++ .+.+.++|+||+|++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~ 85 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGP 85 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCC
Confidence 5899999999999999999999999 99999999876652 21 2222 11 123 3567799999999942
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA 156 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~ 156 (351)
+ ..+++++. .+.++ .++++|+.++|+ .+....+..
T Consensus 86 ~~~~g~~r~~~~~~n~~~~~~~~~----~i~~~-~~~~~vi~~~Np-~~~~~~~~~ 135 (319)
T 1lld_A 86 RQKPGQSRLELVGATVNILKAIMP----NLVKV-APNAIYMLITNP-VDIATHVAQ 135 (319)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH----HHHHH-CTTSEEEECCSS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCceEEEecCc-hHHHHHHHH
Confidence 2 12335666 56554 678899999887 444444444
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-09 Score=97.91 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=92.4
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcccchhHH
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~~ 89 (351)
....+++++|...+........ + +..++|+|||+|.||..++..|.. ...+|.+|||++++.+.+.
T Consensus 100 d~~~lt~~RTaa~s~laa~~la-------~-----~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la 167 (322)
T 1omo_A 100 DATYTTSLRTGAAGGIAAKYLA-------R-----KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFV 167 (322)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHS-------C-----TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhcc-------C-----CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence 5667889999766554443211 1 112689999999999999999987 3458999999999988887
Q ss_pred hc------CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 90 DI------GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 90 ~~------g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+. .+. ++++++++ ++|+|++|+|... .++. ...+.+++.|+++++..|. ..++...+...+.
T Consensus 168 ~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~---pv~~------~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~ 235 (322)
T 1omo_A 168 SYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK---PVVK------AEWVEEGTHINAIGADGPG-KQELDVEILKKAK 235 (322)
T ss_dssp HHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---CCBC------GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEE
T ss_pred HHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---ceec------HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCe
Confidence 64 134 67889999 9999999996532 2221 2456789999999776565 3344333333444
Q ss_pred cEEec
Q 018694 164 SAIDA 168 (351)
Q Consensus 164 ~~v~~ 168 (351)
.|+|.
T Consensus 236 v~vD~ 240 (322)
T 1omo_A 236 IVVDD 240 (322)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 66664
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=91.80 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=95.7
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.+++.+++|+|+..++.+.++... .. . ....++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+
T Consensus 90 ~~~~g~l~G~NTD~~G~~~~lL~~~--~~--~-----l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~l 160 (272)
T 3pwz_A 90 KFEDGRIVAENFDGIGLLRDIEENL--GE--P-----LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALAL 160 (272)
T ss_dssp EEETTEEEEECCHHHHHHHHHHTTS--CC--C-----CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH
T ss_pred EccCCeEEEecCCHHHHHHHHHHHc--CC--C-----ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 4467889999999999999844321 11 1 123689999999999999999999996 999999999988877
Q ss_pred Hhc-C---CcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 89 LDI-G---AHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 89 ~~~-g---~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
.+. + +.. .+.+++. .++|+||.|+|-+..-. . . .+ ...+.++.+++|+... |..+ .+.+..++.|
T Consensus 161 a~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm~~~-~-~----~i~~~~l~~~~~V~DlvY~-P~~T-~ll~~A~~~G 231 (272)
T 3pwz_A 161 RNELDHSRLRI-SRYEALEGQSFDIVVNATSASLTAD-L-P----PLPADVLGEAALAYELAYG-KGLT-PFLRLAREQG 231 (272)
T ss_dssp HHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGGGTC-C-C----CCCGGGGTTCSEEEESSCS-CCSC-HHHHHHHHHS
T ss_pred HHHhccCCeeE-eeHHHhcccCCCEEEECCCCCCCCC-C-C----CCCHHHhCcCCEEEEeecC-CCCC-HHHHHHHHCC
Confidence 665 2 122 2333332 68999999996554311 0 0 11 1245688999999876 4322 3444555567
Q ss_pred Cc-EEec
Q 018694 163 CS-AIDA 168 (351)
Q Consensus 163 ~~-~v~~ 168 (351)
+. ++++
T Consensus 232 ~~~~~~G 238 (272)
T 3pwz_A 232 QARLADG 238 (272)
T ss_dssp CCEEECT
T ss_pred CCEEECC
Confidence 66 5544
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=94.13 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=81.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
||+||+|||+|.||..++..|.+. +++++ ++|+++++.+.+.+. |+ ..+++.+++++ ++|+|++|+|+..+.+.
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 80 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSEL 80 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHH
Confidence 357999999999999999999874 56765 789999988877665 65 47889999987 79999999977666654
Q ss_pred HhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 122 VLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+.. .+ ..++ +++.-. +.++...+++.+...+.++.+.
T Consensus 81 ~~~----al----~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 81 VIA----CA----KAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp HHH----HH----HTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHH----HH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 443 22 2344 444432 3456777788877766565444
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-08 Score=90.96 Aligned_cols=112 Identities=27% Similarity=0.288 Sum_probs=81.0
Q ss_pred CCCeEEEEccChhhHH-HHHHHHH-CCCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHLLN-AGYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.++||+|||+|.||.. ++..|.+ .+++++ ++|+++++.+.+.+. |+..+++.+++..++|+|++|+|+..+.+.+.
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~ 83 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS 83 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH
Confidence 3579999999999996 8888876 467766 889999988877665 77777888877668999999997766655444
Q ss_pred hCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcEEe
Q 018694 124 LHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
. . +..|+ +++.- .+.+....+++.+...+.++.+..
T Consensus 84 ~----a----l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 84 T----L----LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp H----H----HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred H----H----HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 3 2 23454 45542 334566777888877766765554
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=94.30 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=80.4
Q ss_pred CCCeEEEEccChhhHHHHHHHH-H-CCCeEE-EEeCCcccchhHHhc-C--CcccCCHHHhhc--CCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLL-N-AGYTVT-VFNRTLSKAQPLLDI-G--AHLADSPHSLAS--QSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~-~-~g~~V~-~~dr~~~~~~~~~~~-g--~~~~~~~~~~~~--~~DiIi~~vp~~~~~ 119 (351)
+++||||||+|.||..++..|. + .+++++ ++|+++++.+.+.++ | ...+++.+++++ +.|+|++|+|+..+.
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 101 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHA 101 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 3469999999999999999998 4 467765 789999998887765 6 678899999987 489999999777776
Q ss_pred HHHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
+.+.. .+ ..|+ +++.-- +......+++.+...+.++.+
T Consensus 102 ~~~~~----al----~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 102 DVAVA----AL----NANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp HHHHH----HH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHH----HH----HCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 65554 22 2344 444322 344667777777776656533
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=93.35 Aligned_cols=91 Identities=24% Similarity=0.344 Sum_probs=67.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---C------Ccc-cCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---G------AHL-ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---g------~~~-~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|||+|.||.+++..|+..|+ +|+++|+++++++.+... + ..+ .++ .+.+.++|+||+|+|.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 689999999999999999999999 999999998876654321 1 112 134 456789999999996533
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++. .+.++ .++.++|..+|.
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~----~i~~~-~~~~~ii~~tNp 118 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVMKEIAR----NVSKY-APDSIVIVVTNP 118 (319)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH----HHHHH-CTTCEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHH----HHHhh-CCCeEEEEeCCc
Confidence 2456666 66555 467788878776
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=92.56 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=72.0
Q ss_pred CCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 45 ~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
|...+|||+|||+|.||..+|..|+..|+ +|++||+++++++..... .+..++++++.++++|+||+
T Consensus 5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~ 84 (331)
T 1pzg_A 5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 84 (331)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence 44455899999999999999999999998 999999998776552110 13335788878899999999
Q ss_pred ec--CCh-h-----------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 112 IV--GYP-S-----------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 112 ~v--p~~-~-----------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++ |.. . ..++++. ++..+. ++.+++..+|-
T Consensus 85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~----~i~~~~-p~a~vi~~tNP 134 (331)
T 1pzg_A 85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQ----NIKKYC-PKTFIIVVTNP 134 (331)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHH----HHHHHC-TTCEEEECCSS
T ss_pred ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCcEEEEEcCc
Confidence 98 421 1 1556666 665554 77788877764
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=93.61 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=82.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhh--cCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLA--SQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~--~~~DiIi~~vp~~~~~~~v~ 123 (351)
++||+|||+|.||..++..|.+. +++|+ ++|+++++.+.+.+. |+..+++.++++ .++|+|++|+|+..+.+.+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 84 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIE 84 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHH
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 46999999999999999999876 67755 889999988887665 888889999998 46999999998877766555
Q ss_pred hCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
. .+ ..++ +++.-. +.+....+++.+...+.++.+.
T Consensus 85 ~----al----~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 85 Q----CA----RSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp H----HH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred H----HH----HcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4 22 2344 444322 3446677778777766665444
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-08 Score=93.36 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=80.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~ 124 (351)
++||+|||+|.||..++..|.+. +++|+ ++|+++++.+...+.|+..+++.+++++ +.|+|++|+|+..+.+.+..
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~ 84 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAIS 84 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 46899999999999999999876 66765 7799998877655568888999999987 78999999977776665554
Q ss_pred CCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcE
Q 018694 125 HPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 125 ~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
.+ ..|+ +++.- .+.+....+++.+...+.++.+
T Consensus 85 ----al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (359)
T 3e18_A 85 ----AL----EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF 119 (359)
T ss_dssp ----HH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred ----HH----HCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 22 2444 44432 1334667777777776656544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=83.70 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=75.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCccc----CCH---HHh--hcCCCEEEEecCChhH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLA----DSP---HSL--ASQSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~~----~~~---~~~--~~~~DiIi~~vp~~~~ 118 (351)
.++|.|+|+|.||..+++.|.+. |++|+++|+++++.+.+.+.|.... ++. .++ +.++|+||+|+|....
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~ 118 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG 118 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH
Confidence 46899999999999999999998 9999999999999888887776532 122 233 5679999999976666
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
...++. .+. .+.+...++..++. +...+ .+...|+.++..
T Consensus 119 ~~~~~~----~~~-~~~~~~~ii~~~~~-~~~~~----~l~~~G~~~vi~ 158 (183)
T 3c85_A 119 NQTALE----QLQ-RRNYKGQIAAIAEY-PDQLE----GLLESGVDAAFN 158 (183)
T ss_dssp HHHHHH----HHH-HTTCCSEEEEEESS-HHHHH----HHHHHTCSEEEE
T ss_pred HHHHHH----HHH-HHCCCCEEEEEECC-HHHHH----HHHHcCCCEEEc
Confidence 555554 332 33444555544443 44333 233335555533
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.4e-08 Score=78.37 Aligned_cols=109 Identities=10% Similarity=0.150 Sum_probs=73.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C---CHHHh----hcCCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D---SPHSL----ASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~---~~~~~----~~~~DiIi~~vp~~~~~ 119 (351)
...+|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|+... . +.+.+ +.++|++|+++|.+...
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEA 85 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHH
Confidence 3468999999999999999999999999999999999988888776432 1 22211 35799999999776655
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
..++. .+.. +.++..+|...+. +...+ .+...|+..+
T Consensus 86 ~~~~~----~a~~-~~~~~~iiar~~~-~~~~~----~l~~~G~d~v 122 (140)
T 3fwz_A 86 GEIVA----SARA-KNPDIEIIARAHY-DDEVA----YITERGANQV 122 (140)
T ss_dssp HHHHH----HHHH-HCSSSEEEEEESS-HHHHH----HHHHTTCSEE
T ss_pred HHHHH----HHHH-HCCCCeEEEEECC-HHHHH----HHHHCCCCEE
Confidence 54444 2322 3344455544443 44333 3333455544
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-09 Score=93.72 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=94.0
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.+++.+++|+|+..++.+.+..... + ....++.|||+|.+|.+++..|.+.|. +|++++|+.++.+.+
T Consensus 93 ~~~~g~l~G~NTD~~G~~~~L~~~~~---~-------~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L 162 (282)
T 3fbt_A 93 KFSREGISGFNTDYIGFGKMLSKFRV---E-------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI 162 (282)
T ss_dssp EECSSCEEEECCHHHHHHHHHHHTTC---C-------CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred EeeCCEEEeeCCcHHHHHHHHHHcCC---C-------ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 34578899999999999998864311 0 112689999999999999999999998 899999999988777
Q ss_pred HhcC-CcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 89 LDIG-AHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 89 ~~~g-~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+.- .....+.++ + ++|+||.|+|-...-. +-.. --...+.++.+++|+.-....+ .+.+..++.|+.++
T Consensus 163 a~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~p----i~~~~l~~~~~v~DlvY~P~~T--~ll~~A~~~G~~~~ 234 (282)
T 3fbt_A 163 YGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESP----VDKEVVAKFSSAVDLIYNPVET--LFLKYARESGVKAV 234 (282)
T ss_dssp CTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCS----SCHHHHTTCSEEEESCCSSSSC--HHHHHHHHTTCEEE
T ss_pred HHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCC----CCHHHcCCCCEEEEEeeCCCCC--HHHHHHHHCcCeEe
Confidence 6531 111222333 4 8999999996532110 0000 0012345788999988653222 44444555677776
Q ss_pred ec
Q 018694 167 DA 168 (351)
Q Consensus 167 ~~ 168 (351)
++
T Consensus 235 ~G 236 (282)
T 3fbt_A 235 NG 236 (282)
T ss_dssp CS
T ss_pred Cc
Confidence 55
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.6e-09 Score=92.20 Aligned_cols=139 Identities=16% Similarity=0.242 Sum_probs=96.6
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHH
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLL 89 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~ 89 (351)
.+.+.+++++|+..++..++... ... ...++.|||+|.+|.+++..|.+.|. +|++++|+.++.+.+.
T Consensus 92 ~~~g~l~g~NTD~~G~~~~l~~~---~~~--------~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la 160 (271)
T 1npy_A 92 NDNGFLRAYNTDYIAIVKLIEKY---HLN--------KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA 160 (271)
T ss_dssp EETTEEEEECHHHHHHHHHHHHT---TCC--------TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred CcCCEEEeecCCHHHHHHHHHHh---CCC--------CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 45678999999999999988542 111 12579999999999999999999997 7999999999888876
Q ss_pred hc-CCcccCCHHHhhcCCCEEEEecCChhHHH---HHhhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 90 DI-GAHLADSPHSLASQSDVVFSIVGYPSDVR---HVLLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 90 ~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~---~v~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+. +.....+.. ..++|+||.|+|.+..-. +.. .+. ..+.++.+++|+... |..+ .+.+...+.|+.
T Consensus 161 ~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~-----~~~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~ 231 (271)
T 1npy_A 161 ALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL-----AFPKAFIDNASVAFDVVAM-PVET-PFIRYAQARGKQ 231 (271)
T ss_dssp HHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC-----SSCHHHHHHCSEEEECCCS-SSSC-HHHHHHHHTTCE
T ss_pred HHcCCccchhhh--cccCCEEEECCCCCccCccccCCC-----CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCCCE
Confidence 54 433222222 467999999996543211 000 111 224467899999875 4333 555566667887
Q ss_pred EEecc
Q 018694 165 AIDAP 169 (351)
Q Consensus 165 ~v~~p 169 (351)
++++.
T Consensus 232 ~i~Gl 236 (271)
T 1npy_A 232 TISGA 236 (271)
T ss_dssp EECHH
T ss_pred EECCH
Confidence 77653
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=93.95 Aligned_cols=109 Identities=21% Similarity=0.275 Sum_probs=89.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+++||||+|.+|..+|+.+..-|.+|.+||+... +...+.+.. ..+++++++++|+|++++|-..+++.++..
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~--~~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~--- 214 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR--EDLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMINE--- 214 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCH---
T ss_pred CcEEEEECcchHHHHHHHhhcccCceeeecCCccc--hhhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcCH---
Confidence 36899999999999999999999999999998743 233444554 458999999999999999988888777764
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.|..-..+.+.+.+.+..+
T Consensus 215 ~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i 249 (334)
T 3kb6_A 215 ERISLMKDGVYLINTARGKVVDTDALYRAYQRGKF 249 (334)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCE
T ss_pred HHHhhcCCCeEEEecCccccccHHHHHHHHHhCCc
Confidence 45567889999999999988888889998875443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.5e-08 Score=79.72 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=65.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH-hcCCccc-C---CHH---Hh-hcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLA-D---SPH---SL-ASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~-~~g~~~~-~---~~~---~~-~~~~DiIi~~vp~~~~~ 119 (351)
.++|.|+|+|.+|..++..|.+.|++|+++++++++.+.+. ..|.... . +.+ +. +.++|+||+|++.+...
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~ 98 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTN 98 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHH
Confidence 37899999999999999999999999999999999887776 4554322 1 222 22 46799999999665544
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..++. +...+.+...++...+.
T Consensus 99 ~~~~~-----~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 99 FFISM-----NARYMFNVENVIARVYD 120 (155)
T ss_dssp HHHHH-----HHHHTSCCSEEEEECSS
T ss_pred HHHHH-----HHHHHCCCCeEEEEECC
Confidence 44433 33333344555555554
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=92.22 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=79.9
Q ss_pred CCeEEEEccChhhHHHHHHHH-H-CCCeEE-EEeCCcccchhHHhc-C--CcccCCHHHhhcC--CCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-N-AGYTVT-VFNRTLSKAQPLLDI-G--AHLADSPHSLASQ--SDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~-~g~~V~-~~dr~~~~~~~~~~~-g--~~~~~~~~~~~~~--~DiIi~~vp~~~~~~ 120 (351)
|+||+|||+|.||..++..|. + .+++++ ++|+++++.+.+.++ | ...+++.++++++ +|+|++|+|+..+.+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES 81 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence 579999999999999999998 4 466755 789999988887765 6 5778999999876 899999997776666
Q ss_pred HHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 121 HVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
.+.. . +..|+ +++.-. +......+++.+...+.++.+
T Consensus 82 ~~~~----a----l~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 82 SVLK----A----IKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp HHHH----H----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred HHHH----H----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 5544 2 23444 344322 344667777777776656544
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-08 Score=90.42 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=76.2
Q ss_pred CCeEEEEccChhhH-HHHHHHHHC-CCeEEEEeCCcccchhHHhc-CCcc-cCCHHHhh-cCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGR-SMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GAHL-ADSPHSLA-SQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~-~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~~~-~~~~~~~~-~~~DiIi~~vp~~~~~~~v~ 123 (351)
|+||+|||+|.||. .++..|.+. +++|+++|+++++.+.+.++ |+.. +.+..+.+ .++|+|++|+|+..+.+.+.
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~ 81 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA 81 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH
Confidence 57999999999998 599988764 67877999999988877665 6553 44445555 68999999996665555443
Q ss_pred hCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
. .+ ..|+ ++++- ...+....+++.+...+.++.+.
T Consensus 82 ~----al----~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (323)
T 1xea_A 82 F----FL----HLGIPTFVDKPLAASAQECENLYELAEKHHQPLY 118 (323)
T ss_dssp H----HH----HTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred H----HH----HCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEE
Confidence 3 22 2344 45542 23346667778777776666554
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-08 Score=89.11 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=78.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCc-ccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAH-LADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~-~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
.++||||||+|.||..++..|.+. +.+++ ++|+++++.+.+.++ |+. .+++.+++++ ++|+|++|+|+..+.+.
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 83 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKV 83 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 457999999999999999998865 45544 789999998888766 664 7889999997 78999999977766665
Q ss_pred HhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEEe
Q 018694 122 VLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
+.. .+ ..|+ +++.-- +.+....+++.+...+.++.+..
T Consensus 84 ~~~----al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 84 AKA----AL----LAGKHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp HHH----HH----HTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHH----HH----HCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 444 22 2444 444322 34466777788777766765543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-08 Score=89.19 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=79.4
Q ss_pred CeEEEEccChhhHHH-HHHHHHCCCeEE-EEeCCcccchhHHhc-CCc-ccCCHHHhhc--CCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSM-CAHLLNAGYTVT-VFNRTLSKAQPLLDI-GAH-LADSPHSLAS--QSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~i-a~~L~~~g~~V~-~~dr~~~~~~~~~~~-g~~-~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~ 123 (351)
+||+|||+|.||..+ +..|.+.+++++ ++|+++++.+.+.++ |+. .+++.+++++ ++|+|++|+|+..+.+.+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 589999999999998 888877778865 889999888777665 663 6788999886 4999999996666555444
Q ss_pred hCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcEEec
Q 018694 124 LHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
. . +..|+ +++.- .+.+....+++.+...+.++.+..+
T Consensus 81 ~-----a---l~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~ 119 (332)
T 2glx_A 81 A-----A---IRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTN 119 (332)
T ss_dssp H-----H---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred H-----H---HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3 2 23455 44432 2345666777877776666655543
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=82.19 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
||||+|+|+|.||..+++.+.+.+++++ ++|++++. ..|+.++++++++. ++|++|-++ .+..+.+.+
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft-~p~a~~~~~---- 71 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS-NPNLLFPLL---- 71 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS-CHHHHHHHH----
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC-ChHHHHHHH----
Confidence 7999999999999999999998877755 46887652 35788888999988 999999888 666555444
Q ss_pred CCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEEeccCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
. +..+..+|..+++... ..+++.+.. +...++-+|++.
T Consensus 72 -~----l~~g~~vVigTTG~s~e~~~~l~~aa--~~~~v~~a~N~S 110 (243)
T 3qy9_A 72 -D----EDFHLPLVVATTGEKEKLLNKLDELS--QNMPVFFSANMS 110 (243)
T ss_dssp -T----SCCCCCEEECCCSSHHHHHHHHHHHT--TTSEEEECSSCC
T ss_pred -H----HhcCCceEeCCCCCCHHHHHHHHHHH--hcCCEEEECCcc
Confidence 2 4466666767766432 222333333 235667777773
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-08 Score=88.91 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=67.7
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHh---cC---------CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLD---IG---------AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~---~g---------~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+|.||..++..|+.. |++|++||+++++++.... .. +..+++.++ +.++|+||+|+|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 6999999999999999999985 7899999999887665421 11 233466666 8899999999964
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
+. .++++.. .+.++ .++..++..+|. ++.
T Consensus 80 p~~~g~~r~dl~~~n~~i~~~i~~----~i~~~-~~~~~viv~tNP-~~~ 123 (310)
T 1guz_A 80 PRKPGMTREDLLMKNAGIVKEVTD----NIMKH-SKNPIIIVVSNP-LDI 123 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH----HHHHH-CSSCEEEECCSS-HHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCcEEEEEcCc-hHH
Confidence 31 2245555 55555 467777777764 444
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-08 Score=89.73 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|.||..+|..|+..|+ +|++||+++++++..... .+..+++. +.++++|+||++++.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~ 92 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV 92 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence 4799999999999999999999999 999999998876542110 13344666 678899999999833
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ...++++. ++..+. ++.+++..+|-
T Consensus 93 p~k~g~tr~dl~~~n~~i~~~i~~----~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 93 PRKPNMTRSDLLTVNAKIVGSVAE----NVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CCCTTCCSGGGHHHHHHHHHHHHH----HHHHHC-TTCEEEECCSS
T ss_pred CCCCCCchhhHHhhhHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 2 12455665 565554 77787777774
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-07 Score=85.68 Aligned_cols=135 Identities=21% Similarity=0.179 Sum_probs=91.9
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
+.|.+++++|+..++...+..... . ...+++.|+|+|.+|.+++..|.+.|.+|++++|++++.+.+.+.
T Consensus 92 ~~g~l~G~ntD~~G~~~~L~~~~~-----~-----l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~ 161 (271)
T 1nyt_A 92 EDGRLLGDNTDGVGLLSDLERLSF-----I-----RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKL 161 (271)
T ss_dssp TTSCEEEECCHHHHHHHHHHHHTC-----C-----CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred CCCeEEEeCCCHHHHHHHHHhcCc-----C-----cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 567899999999999998854211 1 112689999999999999999999999999999999887776543
Q ss_pred -CC--c-ccCCHHHhh-cCCCEEEEecCChhHHHHHhhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 92 -GA--H-LADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 92 -g~--~-~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
+. . ...+.+++. ..+|+||.|+|.+.. ..+ . .+. ..+.++.+++|+... |..+. +.+...+.|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~-~----~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 162 FAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDI-P----AIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSK 232 (271)
T ss_dssp TGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCC-C----CCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCC
T ss_pred hhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCC-C----CCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCC
Confidence 11 1 112333433 489999999965543 111 1 121 234678899999886 43332 34445556665
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.8e-08 Score=77.34 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=57.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc----CCHHHh----hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA----DSPHSL----ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~----~~~~~~----~~~~DiIi~~vp~~~~~~ 120 (351)
|++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.|.... .+.+.+ +.++|+||+++|......
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n~ 85 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFNL 85 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHHH
Confidence 578999999999999999999999999999999999888877765421 122221 357999999996554433
Q ss_pred HHh
Q 018694 121 HVL 123 (351)
Q Consensus 121 ~v~ 123 (351)
.++
T Consensus 86 ~~~ 88 (141)
T 3llv_A 86 KIL 88 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-08 Score=89.28 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred CCCeEEEEccChhhHHHHHHHH-H-CCCeE-EEEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLL-N-AGYTV-TVFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~-~-~g~~V-~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
.++||+|||+|.||..++..|. + .++++ .++|+++++.+.+.+. |+ ..+++.+++++ ++|+|++|+|+..+.+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~ 86 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE 86 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH
Confidence 4579999999999999999998 4 46774 5789999988777665 66 56789999886 6999999997766665
Q ss_pred HHhhCCCCCcccCCCCCcE-EEec-CCCChhHHHHHHHHHhcC-CCcEE
Q 018694 121 HVLLHPSSGALSGLRPGGI-IVDM-TTSEPSLASELSAAASSK-NCSAI 166 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~-ii~~-s~~~~~~~~~l~~~~~~~-~~~~v 166 (351)
.+.. . +..|+. ++.- .+......+++.+...+. ++.+.
T Consensus 87 ~~~~----a----l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~ 127 (346)
T 3cea_A 87 MTIY----A----MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ 127 (346)
T ss_dssp HHHH----H----HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred HHHH----H----HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 5443 2 234554 4431 223455666777776665 65554
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=89.57 Aligned_cols=139 Identities=21% Similarity=0.150 Sum_probs=91.7
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
+.|.+++++|+..++...+.... . . ...+++.|+|+|.||.+++..|.+.|.+|++++|++++.+.+.+.
T Consensus 92 ~~g~l~g~NTD~~G~~~~L~~~~---~--~-----~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~ 161 (272)
T 1p77_A 92 DDGKLYADNTDGIGLVTDLQRLN---W--L-----RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAER 161 (272)
T ss_dssp TTSCEEEECCHHHHHHHHHHHTT---C--C-----CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred cCCEEEEecCCHHHHHHHHHHhC---C--C-----cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 67889999999999999885421 1 1 112689999999999999999999999999999999888777643
Q ss_pred -CC--cc-cCCHHHhhc-CCCEEEEecCChhHHHHHhhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-
Q 018694 92 -GA--HL-ADSPHSLAS-QSDVVFSIVGYPSDVRHVLLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCS- 164 (351)
Q Consensus 92 -g~--~~-~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~- 164 (351)
+. .. ..+.+++.. ++|+||.|+|.+..- .+ . .+. ..+.++.+++|+......... +.+...+.|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~-~~-~----~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~ 234 (272)
T 1p77_A 162 FQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG-GT-A----SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTN 234 (272)
T ss_dssp HGGGSCEEEEEGGGCCCSCCSEEEECCCC-------------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCC
T ss_pred ccccCCeEEeeHHHhccCCCCEEEECCCCCCCC-CC-C----CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCE
Confidence 11 11 123344333 899999999655431 21 1 121 123467899999886333022 44445556765
Q ss_pred EEe
Q 018694 165 AID 167 (351)
Q Consensus 165 ~v~ 167 (351)
+++
T Consensus 235 ~v~ 237 (272)
T 1p77_A 235 VSD 237 (272)
T ss_dssp EEC
T ss_pred eeC
Confidence 664
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-08 Score=88.94 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=95.1
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC---cccch
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT---LSKAQ 86 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~---~~~~~ 86 (351)
.+++.+++|+|+..++.+.+..... . ....++.|+|+|.+|.+++..|++.|. +|++++|+ .++++
T Consensus 126 ~~~g~l~G~NTD~~Gf~~~L~~~~~-----~-----l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~ 195 (315)
T 3tnl_A 126 NDDGVLTGHITDGTGYMRALKEAGH-----D-----IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAE 195 (315)
T ss_dssp EETTEEEEECCHHHHHHHHHHHTTC-----C-----CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH
T ss_pred ecCCEEEEeCCCHHHHHHHHHHcCC-----C-----ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHH
Confidence 4678899999999999998864211 0 112579999999999999999999998 89999999 77776
Q ss_pred hHHhc-----CC--cc--cCC---HHHhhcCCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHH
Q 018694 87 PLLDI-----GA--HL--ADS---PHSLASQSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASE 153 (351)
Q Consensus 87 ~~~~~-----g~--~~--~~~---~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~ 153 (351)
.+.+. +. .. .++ +.+.+.++|+||.|+|-...-. +... . .....+.++.+++|+.-....+ .
T Consensus 196 ~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p--~-~~~~~l~~~~~V~DlvY~P~~T--~ 270 (315)
T 3tnl_A 196 KTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETL--L-PSADMLRPELIVSDVVYKPTKT--R 270 (315)
T ss_dssp HHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCS--C-CCGGGCCTTCEEEESCCSSSSC--H
T ss_pred HHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCC--C-CcHHHcCCCCEEEEeccCCCCC--H
Confidence 66543 21 11 222 3455678999999996442211 0000 0 0123456788999998763333 4
Q ss_pred HHHHHhcCCCcEEec
Q 018694 154 LSAAASSKNCSAIDA 168 (351)
Q Consensus 154 l~~~~~~~~~~~v~~ 168 (351)
+.+..++.|+.++++
T Consensus 271 ll~~A~~~G~~~~~G 285 (315)
T 3tnl_A 271 LLEIAEEQGCQTLNG 285 (315)
T ss_dssp HHHHHHHTTCEEECS
T ss_pred HHHHHHHCCCeEeCc
Confidence 444455567766654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-08 Score=89.44 Aligned_cols=91 Identities=19% Similarity=0.309 Sum_probs=64.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---C------Cccc-CCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---G------AHLA-DSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---g------~~~~-~~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|||+|.||..++..|+..|+ +|+++|+++++++..... + ..+. ++ .+.+.++|+||++++.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence 699999999999999999999999 999999998765432221 1 1222 33 456789999999995443
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++. ++.++ .++.+++..+|.
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~----~i~~~-~p~~~vi~~tNP 118 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVP----QITRA-APDAVLLVTSNP 118 (304)
T ss_dssp --------CHHHHHHHHHHHHH----HHHHH-CSSSEEEECSSS
T ss_pred CCCCcHHHHHHhHHHHHHHHHH----HHHHh-CCCeEEEEecCc
Confidence 2355665 56555 577788877775
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=88.27 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC---Ce-EEEEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG---YT-VTVFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g---~~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~~~~ 119 (351)
||+||||||+|.||..++..|.+.+ ++ |.++|+++++.+.+.++ |+ ..+++.+++++ +.|+|++|+|+..+.
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 80 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHK 80 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 3579999999999999999998654 34 55789999988887765 66 57889999987 599999999877776
Q ss_pred HHHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 120 RHVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+.+.. .+ ..|+ +++.-- +.+....+++.+...+.++.+.
T Consensus 81 ~~~~~----al----~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 81 AAVML----CL----AAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp HHHHH----HH----HTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHH----HH----hcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 65554 22 2444 444421 3446677778777776665444
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=86.41 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=82.0
Q ss_pred CCeEEEEccChhhH-HHHHHHHHCCCeE-EEEeCCcccchhHHhc--CCcccCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTGVMGR-SMCAHLLNAGYTV-TVFNRTLSKAQPLLDI--GAHLADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~-~ia~~L~~~g~~V-~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
++||||||+|.+|. .++..|...+++| .++|+++++.+.+.++ +...+++.+++++ +.|+|++|+|+..+.+.+
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 83 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA 83 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH
Confidence 57999999999996 6788887778885 5889999999888776 5778899999986 589999999877776655
Q ss_pred hhCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+ ..|+ ++++- .+.+....+++.+...+.++.+.
T Consensus 84 ~~----al----~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 84 LR----TL----DAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp HH----HH----HTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred HH----HH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 54 22 3455 45542 23446677778777766565444
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-08 Score=88.20 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=95.6
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC---cccch
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT---LSKAQ 86 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~---~~~~~ 86 (351)
.+++.+++|+||..++.+.+.... . .....++.|+|+|.+|.+++..|.+.|. +|++++|+ .++++
T Consensus 120 ~~~g~l~G~NTD~~Gf~~~L~~~~------~----~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~ 189 (312)
T 3t4e_A 120 NDDGYLRGYNTDGTGHIRAIKESG------F----DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAV 189 (312)
T ss_dssp EETTEEEEECHHHHHHHHHHHHTT------C----CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHH
T ss_pred ecCCEEEEeCCcHHHHHHHHHhcC------C----CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHH
Confidence 467889999999999999886531 1 0112579999999999999999999998 89999999 77776
Q ss_pred hHHhc-----CC--cc--cCCH---HHhhcCCCEEEEecCChhHHHHHhhCCCCCc---ccCCCCCcEEEecCCCChhHH
Q 018694 87 PLLDI-----GA--HL--ADSP---HSLASQSDVVFSIVGYPSDVRHVLLHPSSGA---LSGLRPGGIIVDMTTSEPSLA 151 (351)
Q Consensus 87 ~~~~~-----g~--~~--~~~~---~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i---~~~l~~~~~ii~~s~~~~~~~ 151 (351)
.+.++ +. .. ..+. .+.+.++|+||.|+|-...-..- . .+ ...+.++.+++|+.-....+
T Consensus 190 ~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~-~----~~~~~~~~l~~~~~v~D~vY~P~~T- 263 (312)
T 3t4e_A 190 AFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLEN-E----SLIGDVSLLRPELLVTECVYNPHMT- 263 (312)
T ss_dssp HHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTT-C----CSCCCGGGSCTTCEEEECCCSSSSC-
T ss_pred HHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCC-C----cccCCHHHcCCCCEEEEeccCCCCC-
Confidence 66542 21 11 2232 45567899999999654311000 0 11 13456788999988763232
Q ss_pred HHHHHHHhcCCCcEEec
Q 018694 152 SELSAAASSKNCSAIDA 168 (351)
Q Consensus 152 ~~l~~~~~~~~~~~v~~ 168 (351)
.+.+..++.|+.++++
T Consensus 264 -~ll~~A~~~G~~~~~G 279 (312)
T 3t4e_A 264 -KLLQQAQQAGCKTIDG 279 (312)
T ss_dssp -HHHHHHHHTTCEEECH
T ss_pred -HHHHHHHHCCCeEECc
Confidence 4444455567776654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-08 Score=89.69 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=80.9
Q ss_pred hccccccccchhh-HHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSLSVS-SLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~ 88 (351)
-...++++||... .+...++.+. ...+|+|||+|.||..++..|... ..+|.+|||+ +.+.+
T Consensus 96 d~~~lT~~RTaA~s~laa~~La~~-------------~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~l 160 (313)
T 3hdj_A 96 DAGTLTRKRTAACTVLAAGALARP-------------RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEI 160 (313)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSCT-------------TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHH
T ss_pred cCchhhhHHHHHHHHHHHHhhccC-------------CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHH
Confidence 5566788888544 4444333221 125899999999999999999863 3589999999 66666
Q ss_pred Hhc-----CC--cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI-----GA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~-----g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.++ |+ ..+ ++++++.++|+||.|+|... .++. .+.+.++++|+++++..|.
T Consensus 161 a~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~---pvl~------~~~l~~G~~V~~vGs~~p~ 218 (313)
T 3hdj_A 161 LERIGRRCGVPARMA-APADIAAQADIVVTATRSTT---PLFA------GQALRAGAFVGAIGSSLPH 218 (313)
T ss_dssp HHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS---CSSC------GGGCCTTCEEEECCCSSTT
T ss_pred HHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC---cccC------HHHcCCCcEEEECCCCCCc
Confidence 543 54 345 89999999999999996531 2222 2457899999999887664
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=89.26 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=77.7
Q ss_pred CCeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhc--CCcccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDI--GAHLADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~--g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
++||||||+|.||.. ++..|.+. +.+|+ ++|+++++.+.+.++ +...+++.+++++ +.|+|++|+|+..+.+-
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 84 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEM 84 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 479999999999995 88888775 66765 889999998888776 5677899999987 45999999976666654
Q ss_pred HhhCCCCCcccCCCCCcE-EEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 122 VLLHPSSGALSGLRPGGI-IVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~-ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
+.. . +..|+. ++.-- ..+....+++.+...+.++.+
T Consensus 85 ~~~----a----l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 85 GLL----A----MSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HHH----H----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHH----H----HHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 443 2 224443 33321 234566677777766555433
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=85.21 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=67.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc----------C--CcccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI----------G--AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~----------g--~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|.||..++..|+..|+ +|+++|+++++++..... . +..+++. +.++++|+||++++.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~ 82 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF 82 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4799999999999999999999998 999999998766432111 1 3334566 778999999999832
Q ss_pred h--------------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P--------------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~--------------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ...++++. ++..+. ++.+++..+|-
T Consensus 83 p~k~g~~~qe~~r~dl~~~n~~i~~~i~~----~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 83 TKAPGKSDKEWNRDDLLPLNNKIMIEIGG----HIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp SSCTTCCSTTCCGGGGHHHHHHHHHHHHH----HHHHHC-TTSEEEECSSS
T ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCC
Confidence 2 13455555 555554 77787777774
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=84.79 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc----------C--CcccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI----------G--AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~----------g--~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|.||..++..|+..|+ +|+++|+++++++..... . +..+++. +.++++|+||++++.
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 80 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence 4799999999999999999999997 999999998766442111 1 2233566 678899999999844
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. ..+++.. .+..+. ++.+++..+|-
T Consensus 81 p~~~g~~r~dl~~~n~~i~~~i~~----~i~~~~-p~a~vi~~tNP 121 (309)
T 1ur5_A 81 PRKPGMSREDLIKVNADITRACIS----QAAPLS-PNAVIIMVNNP 121 (309)
T ss_dssp --------CHHHHHHHHHHHHHHH----HHGGGC-TTCEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHhhC-CCeEEEEcCCc
Confidence 32 2344555 555543 77787777763
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-07 Score=86.36 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=80.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeE-EEEeCCcccchhHHhc-C----CcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTV-TVFNRTLSKAQPLLDI-G----AHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V-~~~dr~~~~~~~~~~~-g----~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.++||+|||+|.||..++..|.+. ++++ .++|+++++.+.+.++ | ...+++.+++++ ++|+|++|+|+..+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 84 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 84 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH
Confidence 357999999999999999999875 5665 5889999888777665 5 356789999886 58999999976666
Q ss_pred HHHHhhCCCCCcccCCCCCcEE-Eec-CCCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 VRHVLLHPSSGALSGLRPGGII-VDM-TTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~i-i~~-s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+-+.. . +..|+.| +.- .+.+....+++.+...+.++.+..+
T Consensus 85 ~~~~~~-----a---l~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 85 VEWAIK-----A---AEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp HHHHHH-----H---HTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHH-----H---HHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 554443 2 2345544 432 2344666778888877777766644
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.6e-08 Score=94.02 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=77.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|+|||+|.||..+|+.+...|.+|++||+++.+.......|+.. .++++++.++|+|++|+ .... ++..
T Consensus 257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~-~t~~---lI~~--- 328 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCT-GNVD---VIKL--- 328 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECC-SSSS---SBCH---
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECC-Chhh---hcCH---
Confidence 36899999999999999999999999999999987654444556654 58999999999999997 3222 2210
Q ss_pred CcccCCCCCcEEEecCCCCh-hHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEP-SLASELSA 156 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~-~~~~~l~~ 156 (351)
+....++++.++||++.+.. -....+.+
T Consensus 329 ~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 329 EHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred HHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 22345678999999999877 36667766
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=87.44 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCeEEEEccChhhHH-HHHHH-HH-CCCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcC--CCEEEEecCChhHHH
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHL-LN-AGYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQ--SDVVFSIVGYPSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L-~~-~g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~ 120 (351)
+|+||||||+|.||.. .+..+ .. .+++|+ ++|+++++.+...+. ++..+++.++++++ .|+|++|+|+..+.+
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 80 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence 3579999999999986 44423 32 366766 889998876554443 67788999999876 899999997777766
Q ss_pred HHhhCCCCCcccCCCCCcEEEecC--CCChhHHHHHHHHHhcCCCcEE
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMT--TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s--~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+.. . +..|+.|+.-- +.+....+++.+...+.++.+.
T Consensus 81 ~~~~----a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 81 YAKR----A----LEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp HHHH----H----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHH----H----HHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 5554 2 23455554321 2346677777777766665444
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-07 Score=89.30 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=73.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .++++++.++|+|+++..... ++.. +
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~----iI~~---e 283 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD----IITS---E 283 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC----SBCT---T
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC----ccCH---H
Confidence 6899999999999999999999999999999987665555667654 489999999999998763222 2221 3
Q ss_pred cccCCCCCcEEEecCCCChh
Q 018694 130 ALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~ 149 (351)
....++++.+|++++.+.+.
T Consensus 284 ~l~~MK~gAIVINvgRg~vE 303 (436)
T 3h9u_A 284 HFPRMRDDAIVCNIGHFDTE 303 (436)
T ss_dssp TGGGCCTTEEEEECSSSGGG
T ss_pred HHhhcCCCcEEEEeCCCCCc
Confidence 44567899999999988653
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-07 Score=86.32 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=77.8
Q ss_pred CCCCeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCChhHH
Q 018694 47 PTNTRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYPSDV 119 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~~~~ 119 (351)
..|+||||||+|.||.. ++..+.+. +.+|+ ++|+++++++.++++ |+ ..+++.+++++ +.|+|++|+|+..+.
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~ 100 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHI 100 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHH
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhH
Confidence 46789999999999975 56677664 56765 789999998888776 65 47899999985 489999999887777
Q ss_pred HHHhhCCCCCcccCCCCCcE-EEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 120 RHVLLHPSSGALSGLRPGGI-IVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~-ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+-+.. .+ ..|+. ++.-- +.+....+++.+...+.++.+.
T Consensus 101 ~~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 101 EWSIK----AA----DAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp HHHHH----HH----HTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred HHHHH----HH----hcCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 65554 22 23433 33211 1235566777777665555443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.5e-08 Score=93.32 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=75.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|+|||+|.||..+|+.+...|.+|++||+++.+.......|... .++++++.++|+|++++ .... ++..
T Consensus 277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~-~t~~---lI~~--- 348 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTAT-GNYH---VINH--- 348 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECS-SSSC---SBCH---
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECC-Cccc---ccCH---
Confidence 37899999999999999999999999999999987643334446654 47999999999999998 3221 1210
Q ss_pred CcccCCCCCcEEEecCCCChh-HHHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPS-LASELSAAA 158 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~ 158 (351)
+....++++.++||++.+... ....+ +.+
T Consensus 349 ~~l~~MK~gAilINvgrg~veID~~aL-~AL 378 (494)
T 3d64_A 349 DHMKAMRHNAIVCNIGHFDSEIDVAST-RQY 378 (494)
T ss_dssp HHHHHCCTTEEEEECSSSSCSBCCGGG-TTS
T ss_pred HHHhhCCCCcEEEEcCCCcchhchHHH-Hhh
Confidence 233456789999999998663 44455 444
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=84.80 Aligned_cols=110 Identities=21% Similarity=0.198 Sum_probs=76.4
Q ss_pred CCCeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
.++||||||+|.||.. .+..+.+. +++|+ ++|+++++++. ...+...+++.+++++ +.|+|++|+|+..+.+.+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~ 84 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA 84 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 4579999999999996 67777654 66765 78999876542 1126778899999987 689999999777776655
Q ss_pred hhCCCCCcccCCCCCcEEEecC--CCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGALSGLRPGGIIVDMT--TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s--~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+ ..|+.|+.-- +......+++.+...+.++.+.
T Consensus 85 ~~----al----~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 85 RL----AL----NAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp HH----HH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HH----HH----HCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 54 22 3455444322 2446667778777776665544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-07 Score=87.88 Aligned_cols=111 Identities=12% Similarity=0.166 Sum_probs=78.9
Q ss_pred CCCeEEEEccChhhH-HHHHHHHHC-CCeE-EEEeCCcccchhHHhc-CCc-----ccCCHHHhhc--CCCEEEEecCCh
Q 018694 48 TNTRIGWIGTGVMGR-SMCAHLLNA-GYTV-TVFNRTLSKAQPLLDI-GAH-----LADSPHSLAS--QSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~-~ia~~L~~~-g~~V-~~~dr~~~~~~~~~~~-g~~-----~~~~~~~~~~--~~DiIi~~vp~~ 116 (351)
.++||+|||+|.||. .++..|.+. ++++ .++|+++++.+.+.++ |+. .+++.+++++ ++|+|++|+|+.
T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~ 161 (433)
T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 161 (433)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCch
Confidence 357999999999997 899988764 4565 5889999888777665 554 5788999887 689999999777
Q ss_pred hHHHHHhhCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 117 SDVRHVLLHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+.+.+.. . +..|+ +++.- ........+++.+...+.++.+.
T Consensus 162 ~h~~~~~~----a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 205 (433)
T 1h6d_A 162 LHAEFAIR----A----FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLM 205 (433)
T ss_dssp GHHHHHHH----H----HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHH----H----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 66665544 2 23444 44442 23346666777777766565554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.6e-07 Score=82.65 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=63.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---C------CcccCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---G------AHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---g------~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.+|||+|||+|.+|..++..|+..|+ +|+++|+++++++..... + ..+..+..+.++++|+||++++.+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p 85 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 85 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 35899999999999999999999988 999999998776542221 1 122223356688999999999654
Q ss_pred hH---------------HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SD---------------VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~---------------~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. ++++.. .+..+ .++.+++..+|-
T Consensus 86 ~k~g~~r~dl~~~n~~i~~~i~~----~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 86 RKPGETRLDLAKKNVMIAKEVTQ----NIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHH----HHHHH-CCSCEEEECSSS
T ss_pred CCCCcCHHHHHHhhHHHHHHHHH----HHHHh-CCCcEEEEecCc
Confidence 31 455555 55555 477777777663
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-07 Score=74.60 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=77.4
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|+|||+ |.+|..+++.|.+.|++ +|++|+.+ .+.+ .|...+.+++|+....|++++|+ ++..+.++++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~v-p~~~~~~v~~ 88 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFR-PPSALMDHLP 88 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECS-CHHHHTTTHH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEe-CHHHHHHHHH
Confidence 57999999 89999999999999997 66777764 2222 37888889999888999999999 6677777776
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++... ..+.+++..+.. .+++.+.+++.|++++.
T Consensus 89 ----~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 89 ----EVLAL-RPGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp ----HHHHH-CCSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred ----HHHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 55442 233566543322 36777777778888874
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.2e-07 Score=84.28 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=66.8
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchh----HHh------cCCc--ccCCHHHhhcCCCEEEEec
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQP----LLD------IGAH--LADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~----~~~------~g~~--~~~~~~~~~~~~DiIi~~v 113 (351)
..++||+|||+|.||.+++..|+..|+ +|+++|+++++++. +.+ .... .+++. +.++++|+||++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence 345899999999999999999999999 99999999887542 111 1222 23555 7789999999997
Q ss_pred CCh---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 114 GYP---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 114 p~~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+ ..++++.. .+..+ .++.+++..+|-
T Consensus 84 g~p~k~G~~R~dl~~~N~~i~~~i~~----~i~~~-~p~a~iivvtNP 126 (324)
T 3gvi_A 84 GVPRKPGMSRDDLLGINLKVMEQVGA----GIKKY-APEAFVICITNP 126 (324)
T ss_dssp SCCCC-----CHHHHHHHHHHHHHHH----HHHHH-CTTCEEEECCSS
T ss_pred CcCCCCCCCHHHHHHhhHHHHHHHHH----HHHHH-CCCeEEEecCCC
Confidence 532 12344444 44444 377788888873
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.8e-07 Score=86.31 Aligned_cols=110 Identities=20% Similarity=0.169 Sum_probs=79.1
Q ss_pred CCeEEEEccCh---hhHHHHHHHHHCC-CeEE--EEeCCcccchhHHhc-CC---cccCCHHHhhcC-------CCEEEE
Q 018694 49 NTRIGWIGTGV---MGRSMCAHLLNAG-YTVT--VFNRTLSKAQPLLDI-GA---HLADSPHSLASQ-------SDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG~G~---mG~~ia~~L~~~g-~~V~--~~dr~~~~~~~~~~~-g~---~~~~~~~~~~~~-------~DiIi~ 111 (351)
++||||||+|. ||...+..+...+ ++++ ++|+++++.+.+.++ |+ ..+++.++++++ .|+|++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence 46999999999 9999988887765 5765 679999998887765 76 578999999865 899999
Q ss_pred ecCChhHHHHHhhCCCCCcccCCCCCcE-EEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 112 IVGYPSDVRHVLLHPSSGALSGLRPGGI-IVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 112 ~vp~~~~~~~v~~~~~~~i~~~l~~~~~-ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
|+|+..+.+-+.. . +..|+. ++.-- ..+....+++.+...+.++.+.
T Consensus 117 ~tp~~~H~~~~~~----a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 117 VTPNHVHYAAAKE----F----LKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp CSCTTSHHHHHHH----H----HTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred CCCcHHHHHHHHH----H----HhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 9988777665554 2 234544 44322 2346677777777766665443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=74.09 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=52.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc----CCHHH---h-hcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA----DSPHS---L-ASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~----~~~~~---~-~~~~DiIi~~vp~~ 116 (351)
|++|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+.+.... .+.+. + ..++|+||.|++.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 457999999999999999999999999999999887766655554321 12222 2 45799999999654
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-07 Score=83.62 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=64.2
Q ss_pred CCeEEEEccChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHHhcCCcc--cCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLLDIGAHL--ADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~g~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++||+|||+|.||..++..|.+ .+++++ ++|+++++.+. .|+.. .+++.+. .++|+|++|+|...+.+.+..
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~~ 84 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTALE 84 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHHH
Confidence 4799999999999999999987 466776 78999887654 45432 3444444 689999999966665554433
Q ss_pred CCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCCCc
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~~~ 164 (351)
. +..|+.+++.... .+...+++.+...+.++.
T Consensus 85 -----a---l~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~ 119 (304)
T 3bio_A 85 -----I---LKKGICTADSFDIHDGILALRRSLGDAAGKSGAA 119 (304)
T ss_dssp -----H---HTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred -----H---HHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 2 3457777765321 233445666665555543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-07 Score=83.53 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=66.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHhc------C--CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLDI------G--AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~~------g--~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+|.||.+++..|+..|+ +|++||+++++++. +... . +...++ .+.++++|+||++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 799999999999999999999998 99999999887642 1111 1 223345 7788999999999854
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.. .+..+ .++.+++..+|-
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~----~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIAK----KIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHH----HHHTT-STTCEEEECSSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH----HHHhh-CCCeEEEEeCCc
Confidence 31 2344554 55555 578888888863
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-07 Score=88.62 Aligned_cols=93 Identities=22% Similarity=0.346 Sum_probs=69.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC-------------------------CHHHhhc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD-------------------------SPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~-------------------------~~~~~~~ 104 (351)
.||+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|..... ++++.+.
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 689999999999999999999999999999999988888776654322 4567788
Q ss_pred CCCEEEEecCChh-HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 105 QSDVVFSIVGYPS-DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 105 ~~DiIi~~vp~~~-~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
++|+||.|+.-+. ....++.. +....++++.+|||++.
T Consensus 265 ~aDIVI~tv~iPg~~ap~Lvt~---emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 KFDIVITTALVPGRPAPRLVTA---AAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TCSEEEECCCCTTSCCCCCBCH---HHHHTSCTTCEEEETTG
T ss_pred cCCEEEECCCCCCcccceeecH---HHHhcCCCCcEEEEEeC
Confidence 9999999862211 11111110 33345678999999984
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=79.06 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=54.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcc-c---CC---HHHh-hcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHL-A---DS---PHSL-ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~-~---~~---~~~~-~~~~DiIi~~vp~~~~~~ 120 (351)
|||.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+. |... . .+ +.++ +.++|+||++++.+....
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~ 80 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL 80 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence 689999999999999999999999999999999988877653 4322 1 12 2222 568999999996554433
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-07 Score=84.18 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHhc------CCcccCCHHHhhcCCCEEEEec
Q 018694 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLDI------GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~~------g~~~~~~~~~~~~~~DiIi~~v 113 (351)
++.+|||+|||+|.||.+++..|+..|+ +|+++|+++++++. +... ++...++..+.++++|+||++.
T Consensus 2 ~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~a 81 (326)
T 3pqe_A 2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICA 81 (326)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEec
Confidence 3446899999999999999999999887 89999999887655 3321 2233334456788999999998
Q ss_pred CChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 114 GYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 114 p~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+. .++++.. .+..+ .++.+++..+|-
T Consensus 82 g~p~kpG~~R~dL~~~N~~Iv~~i~~----~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 82 GANQKPGETRLELVEKNLKIFKGIVS----EVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHT-TCCSEEEECSSS
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHH----HHHHh-cCCeEEEEcCCh
Confidence 5331 1344444 44444 467788888873
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=88.33 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=74.5
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC----Ccc--cCCHHHhhcCCCEEEEecCChhHHH
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG----AHL--ADSPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g----~~~--~~~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
...|||.|||+|.+|..++..|.+ .++|+++|++.++++.+.+.. +.+ ..++.++++++|+||.|+|+..+ .
T Consensus 14 g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~ 91 (365)
T 3abi_A 14 GRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-F 91 (365)
T ss_dssp --CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-H
T ss_pred CCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-c
Confidence 345899999999999999999875 589999999988877765542 111 12345667899999999965543 3
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
.+++ . .+..++.++|++-.. ....++.+...+.|+.++.
T Consensus 92 ~v~~----~---~~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~ 130 (365)
T 3abi_A 92 KSIK----A---AIKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVF 130 (365)
T ss_dssp HHHH----H---HHHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEEC
T ss_pred hHHH----H---HHhcCcceEeeeccc-hhhhhhhhhhccCCceeee
Confidence 3444 2 234667788877543 3334555555556666654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=87.90 Aligned_cols=93 Identities=19% Similarity=0.342 Sum_probs=68.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-----------------------------CCHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-----------------------------DSPH 100 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-----------------------------~~~~ 100 (351)
.||+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.|.... .+++
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~ 270 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA 270 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence 68999999999999999999999999999999988877776665321 1456
Q ss_pred HhhcCCCEEEEecCChh-HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 101 SLASQSDVVFSIVGYPS-DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 101 ~~~~~~DiIi~~vp~~~-~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.+.++|+||.|+.-+. ....++.. +....++++.+|||++.
T Consensus 271 e~l~~aDVVI~tvlipg~~ap~Lvt~---emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 271 EHIAKQDIVITTALIPGRPAPRLVTR---EMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHTCSEEEECCCCSSSCCCCCBCH---HHHTTSCTTCEEEETTG
T ss_pred HHhcCCCEEEECCcCCCCCCCEEecH---HHHhcCCCCCEEEEEeC
Confidence 77889999999862121 11111110 34445679999999984
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=81.71 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~ 123 (351)
++||||||+|.||.. .+..+.+. +++|+ ++|+++++.+. ...+...+++.++++++ .|+|++|+|+..+.+.+.
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~ 85 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQ 85 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 479999999999997 77777765 66765 78999877652 11267788999999875 899999998877776555
Q ss_pred hCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
. .+ ..|+ +++.-- +......+++.+...+.++.+.
T Consensus 86 ~----al----~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 86 S----AL----AAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp H----HH----HTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred H----HH----HCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 4 22 2444 444432 3446677778777776665443
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-07 Score=84.39 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=80.1
Q ss_pred CCeEEEEccCh---hhHHHHHHHHHCC-CeEE--EEeCCcccchhHHhc-CC---cccCCHHHhhcC-------CCEEEE
Q 018694 49 NTRIGWIGTGV---MGRSMCAHLLNAG-YTVT--VFNRTLSKAQPLLDI-GA---HLADSPHSLASQ-------SDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG~G~---mG~~ia~~L~~~g-~~V~--~~dr~~~~~~~~~~~-g~---~~~~~~~~~~~~-------~DiIi~ 111 (351)
++||||||+|. ||...+..+...+ ++++ ++|+++++.+.+.++ |+ ..+++.++++++ .|+|++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 47999999999 9999999887665 5765 579999998887765 76 678999999864 899999
Q ss_pred ecCChhHHHHHhhCCCCCcccCCCCCcEEEe-c-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVD-M-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 112 ~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~-~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
|+|+..+.+-+.. .+ ..|+.|+. - .+.+....+++.+...+.++.+.
T Consensus 92 ~tp~~~H~~~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 92 ATPNGTHYSITKA----AL----EAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp ESCGGGHHHHHHH----HH----HTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHHH----HH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9987777665554 22 24444442 1 12346677788877776665444
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=86.54 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCeEEEEcc----ChhhHHHHHHHHHC--CCeE-EEEeCCcccchhHHhc-CCc---ccCCHHHhhc--CCCEEEEecCC
Q 018694 49 NTRIGWIGT----GVMGRSMCAHLLNA--GYTV-TVFNRTLSKAQPLLDI-GAH---LADSPHSLAS--QSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~----G~mG~~ia~~L~~~--g~~V-~~~dr~~~~~~~~~~~-g~~---~~~~~~~~~~--~~DiIi~~vp~ 115 (351)
++||||||+ |.||..++..|.+. +++| .++|+++++.+.+.++ |+. .+++.+++++ +.|+|++|+|+
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 99 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV 99 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence 469999999 99999999999886 6675 5889999988877765 554 7889999986 58999999977
Q ss_pred hhHHHHHhhCCCCCcccC--C-CCCcEEEec-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 116 PSDVRHVLLHPSSGALSG--L-RPGGIIVDM-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~--l-~~~~~ii~~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
..+.+.+.. .+... . ....+++.- .+......+++.+...+.++.+.
T Consensus 100 ~~H~~~~~~----al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 100 ASHYEVVMP----LLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp HHHHHHHHH----HHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHH----HHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 766665554 22221 0 003466652 33446777788877766665443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.8e-07 Score=84.00 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=80.1
Q ss_pred CCeEEEEccC-hhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTG-VMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G-~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
++||||||+| .||..++..|.+. +++++ ++|+++++.+.+.++ |+..+++.+++++ +.|+|++|+|+..+.+.+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~ 81 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHV 81 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHH
Confidence 5799999999 9999999999875 55654 789999888777665 8888999999986 499999999777666654
Q ss_pred hhCCCCCcccCCCCCcEE-EecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGALSGLRPGGII-VDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~i-i~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+ ..++.| +.-- ..+....+++.+...+.++.+.
T Consensus 82 ~~----al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 119 (387)
T 3moi_A 82 VQ----AS----EQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLV 119 (387)
T ss_dssp HH----HH----HTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred HH----HH----HCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEE
Confidence 44 22 234433 3321 2346667777777766665544
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=81.70 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=79.3
Q ss_pred CCCeEEEEccC-hhhHHHHHHHHHC--CCeE-EEEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTG-VMGRSMCAHLLNA--GYTV-TVFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G-~mG~~ia~~L~~~--g~~V-~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~~~~ 119 (351)
.++||||||+| .+|..++..|.+. +.++ .++|+++++.+.+.++ |+ ..+++.+++++ +.|+|++|+|+..+.
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 96 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL 96 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHH
Confidence 34799999999 8999999999875 4565 5889999988887765 65 67899999986 589999999777666
Q ss_pred HHHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 120 RHVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+-+.. .+ ..|+ +++.-- +.+....+++.+...+.++.+.
T Consensus 97 ~~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 97 PFIEK----AL----RKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp HHHHH----HH----HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHH----HH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 54444 22 2444 444321 2346666777777766565443
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.41 E-value=9.5e-07 Score=82.22 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCCeEEEEccChhhH-HHHHHHHHC-CCeEE-EEeCCcccchhHHhc----CCcccCCHHHhhcC--CCEEEEecCChhH
Q 018694 48 TNTRIGWIGTGVMGR-SMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI----GAHLADSPHSLASQ--SDVVFSIVGYPSD 118 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~-~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~----g~~~~~~~~~~~~~--~DiIi~~vp~~~~ 118 (351)
||+||+|||+|.||. ..+..+.+. +++|+ ++|++ +.+.+.++ ++..+++.++++++ .|+|++|+|+..+
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 78 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH 78 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence 357999999999998 566666554 56765 77888 45555443 67788999999875 8999999977777
Q ss_pred HHHHhhCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+-+.. .+ ..|+.|+ .-- ..+....+++.+...+.++.+.
T Consensus 79 ~~~~~~----al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 79 YDLAKQ----AI----LAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp HHHHHH----HH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHH----HH----HcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 665554 22 2444443 321 2346667777777776665544
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.2e-05 Score=65.31 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=84.4
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec---
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA--- 168 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~--- 168 (351)
|+++++|..|+++++|++|+.+|.+.....+++ .+.+++.+|.+|-+.++.++...-.+.+.+.++.+.+.+.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iak----kii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa 203 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIK----KFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG 203 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHH----HHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHHH----HHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC
Confidence 688899999999999999999999998888999 9999999999999999998877666666666666655543
Q ss_pred cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEc
Q 018694 169 PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 169 pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+.+. .|+ .+..-+ +++..+.+.++.+..++ ++.+
T Consensus 204 aVPgt-----~Gq-~~~g~~yAtEEqIeklveLaksa~k~ay~v 241 (358)
T 2b0j_A 204 CVPEM-----KGQ-VYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (358)
T ss_dssp SCTTT-----CCC-EEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCCC-----CCc-cccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence 23333 344 333333 88999999999999988 4443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.8e-07 Score=82.85 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=75.4
Q ss_pred CCCeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcC--CCEEEEecCChhHHHH
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQ--SDVVFSIVGYPSDVRH 121 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~ 121 (351)
.++||||||+|.||.. .+..+.+. +++|+ ++|++++++.. .. +...+++.++++++ .|+|++|+|+..+.+.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 81 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE--RYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEY 81 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT--TCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH--hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 4579999999999997 77777665 66765 78999876332 22 67788999999876 8999999987777665
Q ss_pred HhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 122 VLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+.. .+ ..|+ +++.-- +.+....+++.+...+.++.+.
T Consensus 82 ~~~----al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 82 AGM----AL----EAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp HHH----HH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHH----HH----HCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 554 22 2344 444322 3346667777777765565443
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=70.60 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=75.1
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
.+|+|||+ |.+|..+++.|.+.|++ +|++++.. +.+ .|+..+.+++++...+|++++|+ ++..+.++++
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~v-p~~~~~~vv~- 95 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFV-KPKLTMEYVE- 95 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECS-CHHHHHHHHH-
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEe-CHHHHHHHHH-
Confidence 57999999 79999999999999998 55666553 222 37888889999888999999999 6677777776
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
++... ..+.+++. .+.. .+++.+.+++.|++++
T Consensus 96 ---~~~~~-gi~~i~~~--~g~~--~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 96 ---QAIKK-GAKVVWFQ--YNTY--NREASKKADEAGLIIV 128 (144)
T ss_dssp ---HHHHH-TCSEEEEC--TTCC--CHHHHHHHHHTTCEEE
T ss_pred ---HHHHc-CCCEEEEC--CCch--HHHHHHHHHHcCCEEE
Confidence 55442 22345443 3322 4677777777888877
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-07 Score=87.25 Aligned_cols=107 Identities=20% Similarity=0.318 Sum_probs=77.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhH------
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSD------ 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~------ 118 (351)
..||+|||+| +|...+..+.+. +++++ ++|+++++.+.+.++ |+..+++.++++++.|++++|+|+..+
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~ 85 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQ 85 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHH
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHH
Confidence 3699999999 899888888764 56755 779999998888776 899999999999999999999977654
Q ss_pred -HHHHhhCCCCCcccCCCCCcE-EEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 -VRHVLLHPSSGALSGLRPGGI-IVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 -~~~v~~~~~~~i~~~l~~~~~-ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
...++. .|+- ++.-- ......+++.+...+.|+.+.-+
T Consensus 86 ~a~~al~-----------aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~~v~ 125 (372)
T 4gmf_A 86 LARHFLA-----------RGVHVIQEHP-LHPDDISSLQTLAQEQGCCYWIN 125 (372)
T ss_dssp HHHHHHH-----------TTCEEEEESC-CCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHH-----------cCCcEEEecC-CCHHHHHHHHHHHHHcCCEEEEc
Confidence 233333 3332 22221 23667777877777778766543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=85.50 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=81.3
Q ss_pred CCeEEEEcc----ChhhHHHHHHHHHC--CCeE-EEEeCCcccchhHHhc-CCc---ccCCHHHhhc--CCCEEEEecCC
Q 018694 49 NTRIGWIGT----GVMGRSMCAHLLNA--GYTV-TVFNRTLSKAQPLLDI-GAH---LADSPHSLAS--QSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~----G~mG~~ia~~L~~~--g~~V-~~~dr~~~~~~~~~~~-g~~---~~~~~~~~~~--~~DiIi~~vp~ 115 (351)
++||||||+ |.||..++..|.+. +++| .++|+++++.+.+.++ |+. .+++.+++++ +.|+|++|+|+
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~ 118 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV 118 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence 479999999 99999999999885 6675 4889999988887765 654 7889999985 68999999977
Q ss_pred hhHHHHHhhCCCCCcccCCC---CCcEEEec-CCCChhHHHHHHHHHhcCC-CcEE
Q 018694 116 PSDVRHVLLHPSSGALSGLR---PGGIIVDM-TTSEPSLASELSAAASSKN-CSAI 166 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~---~~~~ii~~-s~~~~~~~~~l~~~~~~~~-~~~v 166 (351)
..+.+.+.. .+..... ...++++- .+......+++.+...+.+ +.+.
T Consensus 119 ~~H~~~~~~----al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 119 PEHYEVVKN----ILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTI 170 (479)
T ss_dssp HHHHHHHHH----HHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred HHHHHHHHH----HHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 776665554 2222100 02366664 2344667778887776656 5443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-07 Score=82.93 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=90.3
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
+.+.+++++|+..++.+.+..... . ...+++.|+|+|.+|.+++..|++.| +|++++|+.++.+.+.+.
T Consensus 101 ~~g~l~g~nTd~~G~~~~L~~~~~-----~-----l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~ 169 (287)
T 1nvt_A 101 EDGKAIGYNTDGIGARMALEEEIG-----R-----VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKE 169 (287)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHHC-----C-----CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHH
T ss_pred eCCEEEEecCCHHHHHHHHHHhCC-----C-----cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHH
Confidence 466788999999999998864311 1 11257999999999999999999999 999999998877666433
Q ss_pred -C----------CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCc--ccCCCCCcEEEecCCCChhHHHHHHHHH
Q 018694 92 -G----------AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA--LSGLRPGGIIVDMTTSEPSLASELSAAA 158 (351)
Q Consensus 92 -g----------~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i--~~~l~~~~~ii~~s~~~~~~~~~l~~~~ 158 (351)
+ +.. .+..+.+.++|+||.|+|....-. . .. . .+ ...+.++.+++|+... |... .+.+..
T Consensus 170 ~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~ag~~~~~~-~-~~-~-~~~~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a 242 (287)
T 1nvt_A 170 IAEKLNKKFGEEVKF-SGLDVDLDGVDIIINATPIGMYPN-I-DV-E-PIVKAEKLREDMVVMDLIYN-PLET-VLLKEA 242 (287)
T ss_dssp HHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECSCTTCTTC-C-SS-C-CSSCSTTCCSSSEEEECCCS-SSSC-HHHHHH
T ss_pred HhhhcccccceeEEE-eeHHHhhCCCCEEEECCCCCCCCC-C-CC-C-CCCCHHHcCCCCEEEEeeeC-CccC-HHHHHH
Confidence 0 011 122445678999999996543210 0 00 0 11 2345678899999874 4322 344445
Q ss_pred hcCCCcEE
Q 018694 159 SSKNCSAI 166 (351)
Q Consensus 159 ~~~~~~~v 166 (351)
...|+.++
T Consensus 243 ~~~G~~~~ 250 (287)
T 1nvt_A 243 KKVNAKTI 250 (287)
T ss_dssp HTTTCEEE
T ss_pred HHCCCEEe
Confidence 55566554
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-07 Score=86.57 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=73.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~ 128 (351)
++|+|||+|.+|..+++.+...|.+|+++|+++.+.+...+.|+.. .+.++++..+|+||.|++....+. +.+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~~~~l----- 348 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIMLEHI----- 348 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBCHHHH-----
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHHHHHH-----
Confidence 6899999999999999999999999999999998877777778764 578888899999999995444332 233
Q ss_pred CcccCCCCCcEEEecCCCCh
Q 018694 129 GALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~ 148 (351)
..++++.++++++.+..
T Consensus 349 ---~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 349 ---KAMKDHAILGNIGHFDN 365 (494)
T ss_dssp ---HHSCTTCEEEECSSSGG
T ss_pred ---HhcCCCcEEEEeCCCCC
Confidence 34578999999988643
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-07 Score=85.38 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=74.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhhc-CCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLAS-QSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
++|+|+|+|+||..+|+.|.+.|.+|+++|+++++++.+.++ |.... +.+++.. +||+++.|.....-..+.+.
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~~I~~~~~~--- 249 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAVLNDFTIP--- 249 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCCBSTTHHH---
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHHHhCHHHHH---
Confidence 689999999999999999999999999999999888776665 65544 4455544 89999988722211111222
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
.+ ..++|++.+++ |.+.++..+.+.+.|+.|+.
T Consensus 250 -----~l-g~~iV~e~An~-p~t~~ea~~~L~~~Gi~~~P 282 (364)
T 1leh_A 250 -----QL-KAKVIAGSADN-QLKDPRHGKYLHELGIVYAP 282 (364)
T ss_dssp -----HC-CCSEECCSCSC-CBSSHHHHHHHHHHTCEECC
T ss_pred -----hC-CCcEEEeCCCC-CcccHHHHHHHHhCCCEEec
Confidence 22 34577777766 44444456666667776654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=80.07 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=64.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhH----Hhc------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPL----LDI------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~----~~~------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.++||+|||+|.||.+++..|+..|. +|+++|+++++.+.. .+. ...+..+..+.+.++|+||+|++.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~ 84 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence 45799999999999999999988775 899999998754432 111 122223445678899999999754
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. ...+++. .+..+ .++.+++..+|-
T Consensus 85 ~~~~g~~r~dl~~~n~~i~~~i~~----~i~~~-~p~a~~iv~tNP 125 (316)
T 1ldn_A 85 NQKPGETRLDLVDKNIAIFRSIVE----SVMAS-GFQGLFLVATNP 125 (316)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHH----HHHHH-TCCSEEEECSSS
T ss_pred CCCCCCCHHHHHHcChHHHHHHHH----HHHHH-CCCCEEEEeCCc
Confidence 42 2344444 44444 366677777763
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.35 E-value=9e-07 Score=80.93 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=65.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHh------cCCccc-CCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLD------IGAHLA-DSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~------~g~~~~-~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.||..++..|+..|+ +|+++|+++++++. +.+ ....+. ++..+.+.++|+||++.+.+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 799999999999999999998887 89999999876542 221 123333 34567788999999998544
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. .+..+ .++.+++..+|-
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~----~i~~~-~p~a~vivvtNP 120 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVTE----QFVEG-SPDSTIIVVANP 120 (314)
T ss_dssp ------CHHHHHHHHHHHHHHHH----HHHTT-CTTCEEEECCSS
T ss_pred CCCCCCHHHHHHhhHHHHHHHHH----HHHHh-CCCcEEEecCCc
Confidence 2 1344444 44444 577788888873
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=9.9e-07 Score=81.10 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=62.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCe-EEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYT-VTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
++||+|||+|+||..++..+.+. +.+ |.++|+++++ .+. .|+..+++.++++.++|+||+|+|+..+.+.+..
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~~-- 77 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAP-- 77 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHH--
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHHH--
Confidence 47999999999999999999876 456 4588998655 222 4566667888877789999999976656665554
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
. +..++.++....
T Consensus 78 --a----l~aG~~Vv~ekp 90 (320)
T 1f06_A 78 --K----FAQFACTVDTYD 90 (320)
T ss_dssp --H----HTTTSEEECCCC
T ss_pred --H----HHCCCEEEECCC
Confidence 2 234666665443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-06 Score=79.74 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=77.1
Q ss_pred CeEEEEccChhhH-HHHHHHHHCCCeEE-EEeCCcccchhHHhc-C-CcccCCHHHhhcC--CCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGR-SMCAHLLNAGYTVT-VFNRTLSKAQPLLDI-G-AHLADSPHSLASQ--SDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~-~ia~~L~~~g~~V~-~~dr~~~~~~~~~~~-g-~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~ 123 (351)
+||||||+|.+|. .++..+...+.+|+ ++|+++++.+.+.++ | ...+++.++++++ .|+|++|+|+..+.+-+.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~ 106 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAI 106 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 6899999999995 57777777888854 789999998888766 4 6778999999875 899999997776666555
Q ss_pred hCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCc
Q 018694 124 LHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~ 164 (351)
. .+ ..|+ +++.-- +.+....+++.+...+.++.
T Consensus 107 ~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 141 (361)
T 3u3x_A 107 R----AM----QHGKDVLVDKPGMTSFDQLAKLRRVQAETGRI 141 (361)
T ss_dssp H----HH----HTTCEEEEESCSCSSHHHHHHHHHHHHTTCCC
T ss_pred H----HH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 4 22 2344 444322 23466677777777655543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=81.88 Aligned_cols=190 Identities=13% Similarity=0.095 Sum_probs=113.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc------ccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL------SKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~------~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
+||+|||+|+.|.+.|.+|.++|.+|++--|.. ...+...+.|..+. +.+|++..+|+|++.+ ++..-.+++
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~-PD~~q~~vy 115 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLT-PDKQHSDVV 115 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECS-CGGGHHHHH
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeC-ChhhHHHHH
Confidence 789999999999999999999999999887732 23455566688765 7899999999999999 555566678
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEE-ec--C--CHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIF-AG--G--DESV 192 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~-~~--g--~~~~ 192 (351)
+ .+.+.+++|+++. .+.+-.-+ .....+..++.++ -+|-.+++.- ...|...++ +. . +..+
T Consensus 116 ~----~I~p~lk~G~~L~-faHGFnI~---~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a 187 (491)
T 3ulk_A 116 R----TVQPLMKDGAALG-YSHGFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 187 (491)
T ss_dssp H----HHGGGSCTTCEEE-ESSCHHHH---TTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCH
T ss_pred H----HHHhhCCCCCEEE-ecCccccc---ccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhH
Confidence 8 8999999998877 55442111 1111123455554 3455443321 111222222 21 1 2345
Q ss_pred HHHHHHHHHhhCc----eEEcCCccHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 193 VQKLNPLFALMGK----VNYMGGSGKGQFAKLA-NQI-TIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 193 ~~~v~~ll~~~g~----~~~~g~~g~a~~~kl~-~n~-~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
.+.......++|. ++.+. .....-..+. ... +..+...++.-.+......|.+++.+
T Consensus 188 ~~~AlayA~aiG~~raGvieTT-F~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a 250 (491)
T 3ulk_A 188 MAIAKAWAAATGGHRAGVLESS-FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYA 250 (491)
T ss_dssp HHHHHHHHHHHTGGGTCEEECC-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhcCCCcCceeecc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5666677777774 33322 1111111111 111 22223333444455677788887544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=80.47 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=65.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchh----HHh------cCCcc--cCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQP----LLD------IGAHL--ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~----~~~------~g~~~--~~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||+|||+|.||.+++..|+..|+ +|+++|+++++++. +.+ ....+ .++ .+.++++|+||++.+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCCc
Confidence 4799999999999999999999888 99999999877542 211 12233 234 4678899999999743
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..++++.. .+..+. ++.+++..+|-
T Consensus 84 p~k~G~~R~dl~~~N~~i~~~i~~----~i~~~~-p~a~vivvtNP 124 (321)
T 3p7m_A 84 PRKPGMSRDDLLGINIKVMQTVGE----GIKHNC-PNAFVICITNP 124 (321)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH----HHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCHHHHHHHhHHHHHHHHH----HHHHHC-CCcEEEEecCc
Confidence 3 12344554 454444 77787777763
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.8e-07 Score=80.69 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccc---hhHHhc---CCcccCCHHHhhcCCCEEEEecCCh----
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKA---QPLLDI---GAHLADSPHSLASQSDVVFSIVGYP---- 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~---~~~~~~---g~~~~~~~~~~~~~~DiIi~~vp~~---- 116 (351)
|+||+|||+|.||..++..++..|+ +|+++|++++.. ..+... .+..+.+. +.++++|+||++...+
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence 5899999999999999999999999 999999997521 112111 24445676 6688999999996221
Q ss_pred ----------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 ----------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ----------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
...++++. ++..+. ++.+++..+|-
T Consensus 93 tR~dl~~~n~~i~~~i~~----~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 93 SYLDVVQSNVDMFRALVP----ALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp CHHHHHHHHHHHHHHHHH----HHHHHT-TTCEEEECSSS
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHhC-CCeEEEEcCCh
Confidence 12455665 555554 78888888884
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=82.78 Aligned_cols=111 Identities=12% Similarity=0.172 Sum_probs=78.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC-CCeE-EEEeCCcccchhHHh----cC---CcccC----CHHHhhc--CCCEEEEe
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA-GYTV-TVFNRTLSKAQPLLD----IG---AHLAD----SPHSLAS--QSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~-g~~V-~~~dr~~~~~~~~~~----~g---~~~~~----~~~~~~~--~~DiIi~~ 112 (351)
.++||+|||+|.||...+..|.+. +++| .++|+++++.+.+.+ .| ...++ +.+++++ +.|+|++|
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~ 98 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVS 98 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEEC
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEc
Confidence 357999999999999999998874 5675 588999998877654 24 45677 8999987 58999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcE-EEec-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGI-IVDM-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~-ii~~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+|+..+.+.+.. .+ ..|+. ++.- ...+....+++.+...+.++.+.
T Consensus 99 tp~~~h~~~~~~----al----~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 99 SPWEWHHEHGVA----AM----KAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CCGGGHHHHHHH----HH----HTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CCcHHHHHHHHH----HH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 987777665554 22 34553 4332 12346667777777766565543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=76.91 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeE-EEEeCCcccchhHHhc--CCcccCCHHHhh----------cCCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTV-TVFNRTLSKAQPLLDI--GAHLADSPHSLA----------SQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V-~~~dr~~~~~~~~~~~--g~~~~~~~~~~~----------~~~DiIi~~vp 114 (351)
|+||||||+ |.+|...+..+.+.+.++ .++|+++++. .+.+. +...+++.++++ .+.|+|++|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 689999999 789999999999888874 5779998773 33333 567788999887 56899999998
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+..+.+-+.. .+ ..|+.|+ .-- ..+....+++.+...+.++.+.
T Consensus 82 ~~~H~~~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 82 NHLHYPQIRM----AL----RLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp GGGHHHHHHH----HH----HTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred chhhHHHHHH----HH----HCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 7777665554 22 2444444 311 2346667777777766665443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=81.23 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
.++||||||+|.||.. .+..+.+. +++|+ ++|+++++.. ... +...+++.+++++ +.|+|++|+|+..+.+.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 81 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEH 81 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHH
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 3579999999999997 67777654 66764 7799986632 122 6778899999987 68999999988777765
Q ss_pred HhhCCCCCcccCCCCCcE-EEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 122 VLLHPSSGALSGLRPGGI-IVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~-ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+.. .+ ..|+. ++.-- +.+....+++.+...+.++.+.
T Consensus 82 ~~~----al----~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 82 TMA----CI----QAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp HHH----HH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHH----HH----HcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 554 22 24444 44321 2346667777777766555443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=83.25 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHH-HHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDV-RHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~-~~v~~~~~~ 128 (351)
++|+|||+|.+|..+|+.+...|.+|+++++++.+.......|... .++++++.++|+|+.|++....+ ++.
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~lI~~e~------ 320 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKDVITIDH------ 320 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSSSBCHHH------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCccccCHHH------
Confidence 6899999999999999999999999999999986654444557665 47899999999999987432221 222
Q ss_pred CcccCCCCCcEEEecCCCCh
Q 018694 129 GALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~ 148 (351)
...++++.++|+++.+..
T Consensus 321 --l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 321 --MRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --HHHSCTTEEEEECSSSTT
T ss_pred --HhcCCCCeEEEEcCCCCc
Confidence 234679999999998754
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=79.98 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC--cccchhHH----h------cC--CcccCCHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT--LSKAQPLL----D------IG--AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~--~~~~~~~~----~------~g--~~~~~~~~~~~~~~DiIi~~ 112 (351)
.++||+|||+|.||..++..|+..|+ +|+++|++ +++.+... + .. +...++ .+.++++|+||++
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia 85 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT 85 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence 34699999999999999999999999 99999999 44432211 1 11 222334 4567899999999
Q ss_pred cCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 113 VGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 113 vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.+. .++++.. .+..+ .++.+++..+|-
T Consensus 86 ag~p~kpg~~R~dl~~~N~~i~~~i~~----~i~~~-~p~a~vlvvsNP 129 (315)
T 3tl2_A 86 AGIARKPGMSRDDLVATNSKIMKSITR----DIAKH-SPNAIIVVLTNP 129 (315)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHH-CTTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEECCCh
Confidence 84331 2344444 45444 477788888873
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=9.1e-07 Score=81.18 Aligned_cols=93 Identities=11% Similarity=0.086 Sum_probs=67.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHH----hc-------CCcccCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLL----DI-------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~----~~-------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
..+||+|||+|.||..++..|+..|+ +|+++|+++++++... +. .+...++.++ ++++|+||++.+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 35899999999999999999999887 8999999987654421 11 1233456665 889999999974
Q ss_pred Ch---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 115 YP---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 115 ~~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+ ..++++.. ++..+ .++.+++..+|-
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~----~I~k~-~P~a~ilvvtNP 140 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIP----NIVKH-SPDCLKELHPEL 140 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHH----HHHHH-CTTCEEEECSSS
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHH----HHHhh-CCCceEEeCCCc
Confidence 43 12455555 55555 678888888874
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.8e-07 Score=84.67 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=53.1
Q ss_pred CCeEEEEccChh--hHHHHHHHHH----CCCeEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVM--GRSMCAHLLN----AGYTVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~m--G~~ia~~L~~----~g~~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.|||+|||+|.| |..++..|+. .| +|++||+++++++..... .+..+++.+++++++|+||+++
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~ai 83 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISI 83 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEecc
Confidence 479999999996 6889998886 56 999999998776544321 2556788999999999999999
Q ss_pred CC
Q 018694 114 GY 115 (351)
Q Consensus 114 p~ 115 (351)
+.
T Consensus 84 rv 85 (450)
T 3fef_A 84 LP 85 (450)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-06 Score=77.44 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhH----Hh------cCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPL----LD------IGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~----~~------~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+|||+|||+|.+|..++..|+..|. +|.++|+++++++.. .+ ....+..+..+.++++|+||++++.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 4799999999999999999998885 899999998665431 11 12233334567789999999999544
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. .+..+ .++.+++..+|-
T Consensus 86 ~~~g~~r~dl~~~n~~i~~~i~~----~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 86 QKPGETRLDLVSKNLKIFKSIVG----EVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH----HHHHT-TCCSEEEECSSS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH----HHHHh-CCCcEEEEecCc
Confidence 2 2445555 55555 577788877763
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-06 Score=81.92 Aligned_cols=90 Identities=23% Similarity=0.251 Sum_probs=70.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~ 128 (351)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+.......|... .++++++..+|+|++|......+. +.+
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~lI~~e~l----- 294 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKNVVTREHL----- 294 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCHHHH-----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCcccCCHHHH-----
Confidence 6899999999999999999999999999999986655555556544 578999999999999853222222 233
Q ss_pred CcccCCCCCcEEEecCCCCh
Q 018694 129 GALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~ 148 (351)
..++++.++++++.+.+
T Consensus 295 ---~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 295 ---DRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp ---HHSCTTEEEEECSSTTT
T ss_pred ---HhcCCCcEEEEecCCCc
Confidence 34568999999998755
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.3e-06 Score=77.98 Aligned_cols=109 Identities=18% Similarity=0.135 Sum_probs=74.7
Q ss_pred CeEEEEccChhhHHHHHHHHH--------CCCe-EEEEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN--------AGYT-VTVFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~--------~g~~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~ 116 (351)
-||||||+|.||...+..+.. .+.+ |.++|+++++++.+.++ |+ ..+++.+++++ +.|+|++|+|+.
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~ 105 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQ 105 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGG
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChH
Confidence 389999999999988877643 2456 44789999999888776 65 47889999986 479999999888
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEE-EecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGII-VDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~i-i~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.+.+-+.. .+. .|+.| +.-- +.+....+++.+...+.++.+.
T Consensus 106 ~H~~~a~~----al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 106 FHAEMAIA----ALE----AGKHVWCEKPMAPAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp GHHHHHHH----HHH----TTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHH----HHh----cCCeEEEccCCcccHHHHHHhhhhHHhcCCccc
Confidence 87776665 332 34433 3211 1335667777777766665443
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.7e-06 Score=75.47 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=76.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeE-EEEeCCcccchhHHhc--CCcccCCHHHhh-----------cCCCEEEEec
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTV-TVFNRTLSKAQPLLDI--GAHLADSPHSLA-----------SQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V-~~~dr~~~~~~~~~~~--g~~~~~~~~~~~-----------~~~DiIi~~v 113 (351)
|+||||||+ |.||...+..|.+.+.++ .++|+++++. .+.+. +...+++.++++ .+.|+|++|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t 81 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS 81 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence 689999999 789999999999888874 5779998763 33333 567788999886 4689999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
|+..+.+.+.. .+ ..|+ +++.-- ..+....+++.+...+.++.+.
T Consensus 82 P~~~H~~~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 82 PNYLHYPHIAA----GL----RLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp CGGGHHHHHHH----HH----HTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHH----HH----HCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 87777665554 22 2344 333321 2346667777777766565444
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=82.41 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=77.8
Q ss_pred CeEEEEccChhhHHHHHHHHHC---------CCeEE-EEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA---------GYTVT-VFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~---------g~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~ 115 (351)
+||||||+|.||...+..+.+. +.+|+ ++|+++++++.+.++ |+ ..+++.+++++ +.|+|++|+|+
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999988764 34544 779999998888776 55 57889999986 58999999988
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcE-EEecC-CCChhHHHHHHHHHhcCCCcEE
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGI-IVDMT-TSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~-ii~~s-~~~~~~~~~l~~~~~~~~~~~v 166 (351)
..+.+-+.. .+ ..|+. ++.-- ..+....+++.+...+.++.+.
T Consensus 107 ~~H~~~~~~----al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 151 (412)
T 4gqa_A 107 HLHYTMAMA----AI----AAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM 151 (412)
T ss_dssp GGHHHHHHH----HH----HTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHH----HH----HcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence 877776655 33 23443 33321 1335666777776665555443
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=78.48 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHh---------cCCcccCCHHHhhcCCCEEEEecCC
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLD---------IGAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~---------~g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
...+||+|||+|.||.+++..|+..|+ +++++|+++++++.... ......++..+.+.++|+||++.+.
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 345899999999999999999998887 89999999876653211 1233444556678899999999853
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.. .+..+ .++.+++..+|-
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~----~i~~~-~p~a~ilvvtNP 127 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVD----PIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp C----------------CHHHHHH----HHHTT-TCCSEEEECSSS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHH----HHHhc-CCceEEEEccCc
Confidence 32 1233333 34443 467777877763
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-06 Score=75.70 Aligned_cols=115 Identities=24% Similarity=0.272 Sum_probs=74.7
Q ss_pred CCCCeEEEEc-cChhhHHHHHHHHHC-CCeEEE-EeCCcccc-----hhHH--hcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 47 PTNTRIGWIG-TGVMGRSMCAHLLNA-GYTVTV-FNRTLSKA-----QPLL--DIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 47 ~~~~kI~iIG-~G~mG~~ia~~L~~~-g~~V~~-~dr~~~~~-----~~~~--~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+.|+||+|+| +|.||..+++.+.+. +++++. ++++.... ..+. ..|+.+++++++++.++|+||.++ .+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT-~p 83 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFT-LP 83 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECS-CH
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcC-CH
Confidence 3468999999 899999999998764 567664 68874321 1111 126777889999998999999999 66
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEEeccCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v~~pv~ 171 (351)
....+.+. .. +..+.-+|..+++.... .+++.+... ...++-+|++
T Consensus 84 ~a~~~~~~----~a---l~~G~~vVigTTG~s~~~~~~L~~aa~--~~~vv~a~N~ 130 (272)
T 4f3y_A 84 EGTLVHLD----AA---LRHDVKLVIGTTGFSEPQKAQLRAAGE--KIALVFSANM 130 (272)
T ss_dssp HHHHHHHH----HH---HHHTCEEEECCCCCCHHHHHHHHHHTT--TSEEEECSCC
T ss_pred HHHHHHHH----HH---HHcCCCEEEECCCCCHHHHHHHHHHhc--cCCEEEECCC
Confidence 66555554 33 33566677666664322 233443332 3455666666
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=81.57 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=67.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcc------cCCHHHhhcCCCEEEEecCChhH-HH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHL------ADSPHSLASQSDVVFSIVGYPSD-VR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~------~~~~~~~~~~~DiIi~~vp~~~~-~~ 120 (351)
..+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+. |... ..+.++.+..+|+||.|++.+.. ..
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~ 247 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAP 247 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCc
Confidence 3789999999999999999999999999999999887776653 4432 23456677789999999853432 11
Q ss_pred HHhhCCCCCcccCCCCCcEEEecC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.++.. +....++++.+||+++
T Consensus 248 ~li~~---~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 248 KLVSN---SLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCBCH---HHHTTSCTTCEEEEGG
T ss_pred ceecH---HHHhcCCCCcEEEEEe
Confidence 11100 2233456889999988
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-06 Score=82.06 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=51.6
Q ss_pred CCeEEEEccChh--hHHHHHHHHHC----CCeEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEE
Q 018694 49 NTRIGWIGTGVM--GRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~m--G~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi 110 (351)
+|||+|||+|.| |.+++..|+.. |++|++||+++++++..... .+..+++..+++++||+||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 479999999997 57778888754 88999999999876543221 1344567778889999999
Q ss_pred EecCC
Q 018694 111 SIVGY 115 (351)
Q Consensus 111 ~~vp~ 115 (351)
+++|.
T Consensus 83 iaagv 87 (480)
T 1obb_A 83 NTAMV 87 (480)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99953
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.9e-06 Score=76.27 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=65.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecCChh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp~~~- 117 (351)
|||+|||+|.+|..++..|...+. +|+++|+++++++..... ...+..+..+.+.++|+||++.+.+.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~ 85 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK 85 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 799999999999999999998776 899999998776542111 22333355677899999999985442
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.. .+..+ .++..++..+|-
T Consensus 86 ~g~~R~dl~~~n~~i~~~i~~----~i~~~-~p~a~iiv~tNP 123 (318)
T 1ez4_A 86 PGESRLDLVNKNLNILSSIVK----PVVDS-GFDGIFLVAANP 123 (318)
T ss_dssp -------CHHHHHHHHHHHHH----HHHHT-TCCSEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEeCCc
Confidence 2344444 44444 577777777763
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=76.22 Aligned_cols=171 Identities=23% Similarity=0.335 Sum_probs=99.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCe-EEEEeCCcccchhHHhc--C----------------------CcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYT-VTVFNRTLSKAQPLLDI--G----------------------AHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~-V~~~dr~~~~~~~~~~~--g----------------------~~~~~~~~~~ 102 (351)
+.||||||+|.||..++..+.+. +.+ +.++|+++++.+.+.++ | ...+++.+++
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 37999999999999999988753 455 45779999887766432 3 3467899998
Q ss_pred hc--CCCEEEEecCChh-HHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEEeccCCCCchhhc
Q 018694 103 AS--QSDVVFSIVGYPS-DVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAIDAPVSGGDRGAK 178 (351)
Q Consensus 103 ~~--~~DiIi~~vp~~~-~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~ 178 (351)
++ +.|+|++|+|.+. +.+.+.. ++..|+.|+..... .......+.+...+.|+.+
T Consensus 103 L~d~dIDaVviaTp~p~~H~e~a~~--------AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl------------- 161 (446)
T 3upl_A 103 LSNPLIDVIIDATGIPEVGAETGIA--------AIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIY------------- 161 (446)
T ss_dssp HTCTTCCEEEECSCCHHHHHHHHHH--------HHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE-------------
T ss_pred hcCCCCCEEEEcCCChHHHHHHHHH--------HHHcCCcEEecCcccCHHHHHHHHHHHHHhCCee-------------
Confidence 86 4899999997654 3443333 33467777744321 0112234444444444433
Q ss_pred cCceeEEecCC-HHHHHHHHHHHHhhCc-eEEcCC---------ccHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 018694 179 TGTLAIFAGGD-ESVVQKLNPLFALMGK-VNYMGG---------SGKGQF----------AKLANQITIATTMVGLVEGM 237 (351)
Q Consensus 179 ~g~~~~~~~g~-~~~~~~v~~ll~~~g~-~~~~g~---------~g~a~~----------~kl~~n~~~~~~~~~~~Ea~ 237 (351)
.+..|+ +.....+-++.+.+|. ++.+|. .....+ .+|++.. ..+ ...+.|+.
T Consensus 162 -----~~~~gdqp~~~~eLv~~a~~~G~~~v~~Gkg~~~~~~~~~t~~~~~~~a~~~~~~~~m~~sf-~dg-tk~~~Em~ 234 (446)
T 3upl_A 162 -----SLGAGDEPSSCMELIEFVSALGYEVVSAGKGKNNPLNFDATPDDYRQEADRRNMNVRLLVEF-IDG-SKTMVEMA 234 (446)
T ss_dssp -----EECTTSHHHHHHHHHHHHHHTTCEEEEEEEEESSCCCTTCCHHHHHHHHHHTTCCHHHHHHH-HTS-HHHHHHHH
T ss_pred -----eecCCcchHHHHHHHHHHHhCCCeEEEeccCcCCcccCCCChhHHHHHHHHCCCChHHhhhh-ccc-cHHHHHHH
Confidence 223343 3334455556666666 444431 111111 1222221 111 23367888
Q ss_pred HHHHHcCCCH
Q 018694 238 VYAHKAGLNV 247 (351)
Q Consensus 238 ~la~~~Gi~~ 247 (351)
.+|.+.|+.+
T Consensus 235 ~vaNatGl~p 244 (446)
T 3upl_A 235 AIANATGLVP 244 (446)
T ss_dssp HHHHHHCCBC
T ss_pred HHHhhcCCCC
Confidence 8888888766
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.9e-06 Score=79.02 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=77.5
Q ss_pred CCCeEEEEc-cChhhHH-HH----HHHHHCC-CeE----------EEEeCCcccchhHHhc-CC-cccCCHHHhhcC--C
Q 018694 48 TNTRIGWIG-TGVMGRS-MC----AHLLNAG-YTV----------TVFNRTLSKAQPLLDI-GA-HLADSPHSLASQ--S 106 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~-ia----~~L~~~g-~~V----------~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~~--~ 106 (351)
.++||+||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+.+.++ |+ ..+++.++++++ .
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~i 84 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKND 84 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSC
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCC
Confidence 347899999 9999998 77 7776544 222 4899999998888765 66 468899999865 8
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEe-c-CCCChhHHHHHHHHHhcCCCcEE
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVD-M-TTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~-~-s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
|+|++|+|+..+.+-+.. . +..|+.|+. - ........+++.+...+.++.+.
T Consensus 85 D~V~i~tp~~~h~~~~~~----a----l~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 85 TMFFDAATTQARPGLLTQ----A----INAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp CEEEECSCSSSSHHHHHH----H----HTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEECCCchHHHHHHHH----H----HHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 999999987776665444 2 234554442 1 12346667777777766665443
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=82.40 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=51.3
Q ss_pred CeEEEEccChh-hHHHHHHHHHC-----CCeEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNA-----GYTVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~-----g~~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|.+ |.+++..|... +.+|++||+++++++..... .+..+++..++++++|+||+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVi 108 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA 108 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEE
Confidence 49999999998 66688888877 66899999999876553221 13345678888999999999
Q ss_pred ecCC
Q 018694 112 IVGY 115 (351)
Q Consensus 112 ~vp~ 115 (351)
++|.
T Consensus 109 aag~ 112 (472)
T 1u8x_X 109 HIRV 112 (472)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 9965
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.1e-06 Score=79.39 Aligned_cols=108 Identities=8% Similarity=0.011 Sum_probs=72.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCc-ccchhHHhc----C--CcccCCHHHhhc--CCCEEEEecCChh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTL-SKAQPLLDI----G--AHLADSPHSLAS--QSDVVFSIVGYPS 117 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~-~~~~~~~~~----g--~~~~~~~~~~~~--~~DiIi~~vp~~~ 117 (351)
||+||||||+|.+|..++..| ..+.+|+ ++|+++ ++.+.+.+. | ...+++.+++++ +.|+|++|+|+..
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL 79 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred CceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence 468999999999999888877 6677765 679987 455555432 4 467899999986 4899999997776
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCc
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~ 164 (351)
+.+-+.. .+ ..|+.|+ .-- ..+....+++.+...+.++.
T Consensus 80 H~~~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 80 NGKILLE----AL----ERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHH----HH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH----HH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 6655444 22 2344333 211 13355667777776655543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=66.34 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=50.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc-ccchhHH---hcCCccc----CC---HHHh-hcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL-SKAQPLL---DIGAHLA----DS---PHSL-ASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~~~~~---~~g~~~~----~~---~~~~-~~~~DiIi~~vp~~~ 117 (351)
++|.|+|+|.+|..+++.|.+.|++|+++++++ ++.+.+. ..|+.+. .+ +.++ +.++|+||+|++...
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChH
Confidence 579999999999999999999999999999984 5444443 2243221 12 2233 678999999996554
Q ss_pred HHH
Q 018694 118 DVR 120 (351)
Q Consensus 118 ~~~ 120 (351)
...
T Consensus 84 ~n~ 86 (153)
T 1id1_A 84 DNA 86 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8e-06 Score=75.11 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=65.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.|||+|||+|.+|..++..|+..+. +|+++|+++++++..... .+.+..+..+.+.++|+||++.+.+.
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~ 88 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3899999999999999999988776 899999998776442221 22233355677889999999985442
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.. .+..+ .++..++..+|-
T Consensus 89 k~g~~R~dl~~~n~~i~~~i~~----~i~~~-~p~a~iiv~tNP 127 (326)
T 2zqz_A 89 KPGETRLDLVNKNLKILKSIVD----PIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp ----CHHHHHHHHHHHHHHHHH----HHHHH-TCCSEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCeEEEEeCCc
Confidence 2334444 44444 477777777764
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-06 Score=81.63 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=77.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-CCcc----cC---CHHHhhcCCCEEEEecCChh
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GAHL----AD---SPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~~~----~~---~~~~~~~~~DiIi~~vp~~~ 117 (351)
..++||.|+|+|.+|.+++..|.+. |++|++++|++++++.+.+. ++.. .. +..+++.++|+||.|+|...
T Consensus 21 l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~ 100 (467)
T 2axq_A 21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTF 100 (467)
T ss_dssp --CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG
T ss_pred CCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhh
Confidence 3457899999999999999999987 78999999999888777654 3321 11 33456678999999996543
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
. ..+.. . .+..+..+++.+...+.. ..+.+...+.|+.++.+
T Consensus 101 ~-~~v~~----a---~l~~g~~vvd~~~~~p~~-~~Ll~~Ak~aGv~~i~g 142 (467)
T 2axq_A 101 H-PNVVK----S---AIRTKTDVVTSSYISPAL-RELEPEIVKAGITVMNE 142 (467)
T ss_dssp H-HHHHH----H---HHHHTCEEEECSCCCHHH-HHHHHHHHHHTCEEECS
T ss_pred h-HHHHH----H---HHhcCCEEEEeecCCHHH-HHHHHHHHHcCCEEEec
Confidence 3 22333 1 123567788876544543 45555555667777655
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.15 E-value=7e-06 Score=73.76 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHH-CCCeEE-EEeCCccc-----chhHH---hcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLN-AGYTVT-VFNRTLSK-----AQPLL---DIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~-----~~~~~---~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.|+||+|+| +|.||..+++.+.+ .+++++ ++|+++.. +..+. ..|+.+++++++++.++|+||-++ .+
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT-~p 98 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS-QP 98 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS-CH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC-CH
Confidence 457999999 99999999999875 456755 55886432 11221 236788899999999999999999 56
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
..+.+.+. .. +..+.-+|..+++-.. ..+++.+... .+.++-+|++.
T Consensus 99 ~a~~~~~~----~~---l~~Gv~vViGTTG~~~e~~~~L~~aa~--~~~~~~a~N~S 146 (288)
T 3ijp_A 99 QASVLYAN----YA---AQKSLIHIIGTTGFSKTEEAQIADFAK--YTTIVKSGNMS 146 (288)
T ss_dssp HHHHHHHH----HH---HHHTCEEEECCCCCCHHHHHHHHHHHT--TSEEEECSCCC
T ss_pred HHHHHHHH----HH---HHcCCCEEEECCCCCHHHHHHHHHHhC--cCCEEEECCCc
Confidence 55554444 22 3456667777776433 3334444433 35567777773
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-06 Score=81.96 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=66.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC---------------------------CHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD---------------------------SPHSL 102 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~---------------------------~~~~~ 102 (351)
.||+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|..... ++.+.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~ 252 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQ 252 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999887777666655332 24566
Q ss_pred hcCCCEEEEe--cCC--h-hH-HHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 103 ASQSDVVFSI--VGY--P-SD-VRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 103 ~~~~DiIi~~--vp~--~-~~-~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+..+|+||.| +|. . .- .++.+. .++++.+||+++.
T Consensus 253 ~~~aDvVI~~~~~pg~~ap~li~~~~l~--------~mk~g~vIVdva~ 293 (401)
T 1x13_A 253 AKEVDIIVTTALIPGKPAPKLITREMVD--------SMKAGSVIVDLAA 293 (401)
T ss_dssp HHHCSEEEECCCCTTSCCCCCBCHHHHH--------TSCTTCEEEETTG
T ss_pred hCCCCEEEECCccCCCCCCeeeCHHHHh--------cCCCCcEEEEEcC
Confidence 7789999999 431 1 11 123333 4568999999884
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.5e-06 Score=77.75 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=59.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCC--------Ce-EEEEeCCcccchhHHhc-CC-cccCCHHHhhc--CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG--------YT-VTVFNRTLSKAQPLLDI-GA-HLADSPHSLAS--QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g--------~~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~--~~DiIi~~vp~~ 116 (351)
-||||||+|.||...+..+.... .+ |.++|+++++++.+.++ |+ ..+++.+++++ +.|+|++|+|+.
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 37999999999999888876532 25 44789999998888766 54 56889999986 489999999888
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
.+.+-+..
T Consensus 87 ~H~~~~~~ 94 (390)
T 4h3v_A 87 SHAEIAIA 94 (390)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776665
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-06 Score=80.69 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=64.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-cCCcc------cCCHHHhhcCCCEEEEecCChhH-HHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHL------ADSPHSLASQSDVVFSIVGYPSD-VRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-~g~~~------~~~~~~~~~~~DiIi~~vp~~~~-~~~ 121 (351)
++|+|+|+|.+|..+++.+...|++|+++|+++++.+.+.+ .|... ..+.++.+..+|+||.|++.+.. ...
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~ 246 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPK 246 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------C
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccch
Confidence 78999999999999999999999999999999988776655 34321 22455667789999999964431 111
Q ss_pred H-hhCCCCCcccCCCCCcEEEecCC
Q 018694 122 V-LLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v-~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+ .. ...+.++++..||+++.
T Consensus 247 li~~----~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 247 LVTR----DMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp CSCH----HHHTTSCTTCEEEECC-
T ss_pred hHHH----HHHHhhcCCCEEEEEec
Confidence 1 11 23344567889998884
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=73.07 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=73.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHH----CCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLN----AGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~----~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
.++||+|||+|.||...+..+.. .+.+++ ++|++... + ..|+. ..+.+++++ +.|+|++|+|+..+.+
T Consensus 6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-~---~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~ 80 (294)
T 1lc0_A 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-S---LDEVR-QISLEDALRSQEIDVAYICSESSSHED 80 (294)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-E---ETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH
T ss_pred CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-H---HcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH
Confidence 45799999999999999998864 355654 67876421 1 12444 478999886 6899999998777766
Q ss_pred HHhhCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcEEec
Q 018694 121 HVLLHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+.. .+ ..|+ ++++- .+.+....+++.+...+.++.+..+
T Consensus 81 ~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~ 122 (294)
T 1lc0_A 81 YIRQ----FL----QAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEE 122 (294)
T ss_dssp HHHH----HH----HTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHH----HH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 5554 22 3455 45542 2344677778888877777766544
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.11 E-value=7.2e-06 Score=74.93 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=64.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecCChh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp~~~- 117 (351)
|||+|||+|.+|.+++..|+..+ .+|+++|+++++++..... ...+..+..+.++++|+||++.+.+.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 69999999999999999999877 4899999998766542111 12233334667889999999985442
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.. .+..+ .++..++..+|-
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~----~i~~~-~p~a~iiv~tNP 118 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVVP----RVLEA-APEAVLLVATNP 118 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH----HHHHH-CTTCEEEECSSS
T ss_pred CCcCHHHHHHhhHHHHHHHHH----HHHHH-CCCcEEEEecCc
Confidence 2344444 44444 567777777763
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.10 E-value=5.7e-06 Score=76.07 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=66.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhH----Hhc-------CCcccCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPL----LDI-------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~----~~~-------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
..+||+|||+|.||..++..|+..|+ +|+++|+++++++.. ..- .+....+.+ .++++|+||++..
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG 96 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAG 96 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccC
Confidence 35899999999999999999999888 899999998765442 211 112244555 5889999999974
Q ss_pred Chh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 115 YPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 115 ~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+. .++++.. .+..+ .++..++..+|-
T Consensus 97 ~~~kpG~tR~dL~~~N~~I~~~i~~----~i~~~-~p~a~vlvvtNP 138 (331)
T 4aj2_A 97 ARQQEGESRLNLVQRNVNIFKFIIP----NVVKY-SPQCKLLIVSNP 138 (331)
T ss_dssp CCCCTTCCGGGGHHHHHHHHHHHHH----HHHHH-CTTCEEEECSSS
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHH----HHHHH-CCCeEEEEecCh
Confidence 321 2344454 45554 577888888874
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=72.66 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc-hhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+||+|+|+ |.||..+++.+.+.|++ .++..++.+. +. ..|+..+.+.+++.. ++|++++|+|+ ....+++.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~~ 82 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSIL 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHHH
Confidence 379999998 99999999999988888 4455555432 11 247888999999987 89999999955 44444554
Q ss_pred CCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEeccCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
+.... .-+.+|..+.+.+ ...+++.+..++.++.++ +|+.
T Consensus 83 ----ea~~~--Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li-GPNc 123 (288)
T 2nu8_A 83 ----EAIDA--GIKLIITITEGIPTLDMLTVKVKLDEAGVRMI-GPNT 123 (288)
T ss_dssp ----HHHHT--TCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE-CSSC
T ss_pred ----HHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE-ecCC
Confidence 33321 1234455665543 334467777666676554 3443
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=70.84 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=73.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeE-EEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTV-TVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V-~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-|||+++|+|+||..+++. . ++++ .+|+ ++...+ |+..+++.++++.++|+|+.|. ....+++...
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A-~~~av~e~~~--- 78 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECA-SPEAVKEYSL--- 78 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECS-CHHHHHHHHH---
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECC-CHHHHHHHHH---
Confidence 3899999999999999998 4 7885 4566 455544 7777888999888999999999 7777776554
Q ss_pred CCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCCCcE
Q 018694 128 SGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKNCSA 165 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~~~~ 165 (351)
.+ +..|.-++.+|.+ .+...+++.+...+.+..+
T Consensus 79 -~i---L~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l 115 (253)
T 1j5p_A 79 -QI---LKNPVNYIIISTSAFADEVFRERFFSELKNSPARV 115 (253)
T ss_dssp -HH---TTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred -HH---HHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence 33 4577778877764 3444456666665555543
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-06 Score=79.88 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=51.5
Q ss_pred CCeEEEEccChh-hHHHHHHHHHC-----CCeEEEEeCCc--ccchhHHh--------cC----CcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGTGVM-GRSMCAHLLNA-----GYTVTVFNRTL--SKAQPLLD--------IG----AHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~m-G~~ia~~L~~~-----g~~V~~~dr~~--~~~~~~~~--------~g----~~~~~~~~~~~~~~Di 108 (351)
.|||+|||+|.+ |.+++..|... +.+|++||+++ ++++.... .+ +..+++..++++++|+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 479999999999 88888888873 56899999998 76554211 11 3335677788999999
Q ss_pred EEEecCC
Q 018694 109 VFSIVGY 115 (351)
Q Consensus 109 Ii~~vp~ 115 (351)
||+++|.
T Consensus 87 VVitagv 93 (450)
T 1s6y_A 87 VTTQFRV 93 (450)
T ss_dssp EEECCCT
T ss_pred EEEcCCC
Confidence 9999964
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.1e-06 Score=75.81 Aligned_cols=66 Identities=9% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHhc-----CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLDI-----GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~~-----g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
++||+|||+ |.+|..+|..+...|. +|+++|+++++++. +... .+...++..+.++++|+||++..
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 579999997 9999999999998884 89999999876554 2221 23445677788899999999974
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-06 Score=80.00 Aligned_cols=69 Identities=30% Similarity=0.412 Sum_probs=55.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-CCcc--cCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-GAHL--ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.++|+|||+|.||..+++.+...|. +|++++|++++.+.+.+. |... ..+..+.+..+|+||.|+|.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence 3689999999999999999999998 899999998887555443 5443 2456677789999999996543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.6e-06 Score=76.16 Aligned_cols=90 Identities=21% Similarity=0.187 Sum_probs=64.5
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc----------C--CcccCCHHHhhcCCCEEEEecCChh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI----------G--AHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~----------g--~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
||+|||+|.||..++..++..|+ +|+++|+++++++..... . +..+.+. +.++++|+||++.+.+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 69999999999999999988888 799999998765442111 2 2223455 67889999999975432
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++. ++..+. ++..+|..+|-
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~~----~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLAE----KIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHHH----HHHHHC-TTCEEEECCSS
T ss_pred CCCCcHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEeCCc
Confidence 2555665 555553 77777777773
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=74.20 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=72.9
Q ss_pred CCeEEEEccChhhH-HHHHHHHHC-CCeE-EEEeCCcccchhHHhcCCcccCCHHHhhcC---CCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTGVMGR-SMCAHLLNA-GYTV-TVFNRTLSKAQPLLDIGAHLADSPHSLASQ---SDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~-~ia~~L~~~-g~~V-~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v 122 (351)
++||||||+|.||. .++..|.+. +.+| .++|+++++ .|+..+++.++++++ .|+|++|+|+..+.+-+
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~ 98 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAA 98 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence 46999999999998 788888875 5665 477988654 367788999998864 89999999766665544
Q ss_pred hhCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCcEEec
Q 018694 123 LLHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.. . +..|+.|+ .-- .......+++.+...+.++.+..+
T Consensus 99 ~~----a----l~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~ 138 (330)
T 4ew6_A 99 YK----A----LVAGKHVFLEKPPGATLSEVADLEALANKQGASLFAS 138 (330)
T ss_dssp HH----H----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred HH----H----HHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 43 2 23444444 321 233566677777776666655433
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=7.5e-06 Score=73.38 Aligned_cols=113 Identities=21% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHH-CCCeEE-EEeCCcccc--hhH------HhcCCcccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLN-AGYTVT-VFNRTLSKA--QPL------LDIGAHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~--~~~------~~~g~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
+|||+|+|+ |.||..+++.+.+ .|++++ ++|+++++. +.+ ...++...+++++++.++|+||-++ .+.
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft-~p~ 83 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RPE 83 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC-ChH
Confidence 479999998 9999999998774 577876 778876431 111 1124556778888888899999888 555
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEEeccCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
...+.+. .. +..+.-+|..+++. ....+.+.+.. +...++-+|++
T Consensus 84 ~~~~~~~----~a---~~~G~~vVigTtG~~~e~~~~L~~~a--~~~~vv~a~N~ 129 (273)
T 1dih_A 84 GTLNHLA----FC---RQHGKGMVIGTTGFDEAGKQAIRDAA--ADIAIVFAANF 129 (273)
T ss_dssp HHHHHHH----HH---HHTTCEEEECCCCCCHHHHHHHHHHT--TTSCEEECSCC
T ss_pred HHHHHHH----HH---HhCCCCEEEECCCCCHHHHHHHHHhc--CCCCEEEEecC
Confidence 5555554 22 23555566555443 22223333332 23445555555
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.7e-06 Score=78.57 Aligned_cols=88 Identities=17% Similarity=0.300 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CC---------------------------H
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DS---------------------------P 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~---------------------------~ 99 (351)
..||+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|.... +. .
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l 251 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 251 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHH
Confidence 368999999999999999999999999999999988777766665433 11 5
Q ss_pred HHhhcCCCEEEEec--CCh-h--H-HHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 100 HSLASQSDVVFSIV--GYP-S--D-VRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 100 ~~~~~~~DiIi~~v--p~~-~--~-~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.+.+..+|+||.|+ |.. . . .++.+ ..++++.+|++++
T Consensus 252 ~~~~~~aDvVi~~~~~pg~~~~~li~~~~l--------~~mk~g~vivdva 294 (384)
T 1l7d_A 252 LKELVKTDIAITTALIPGKPAPVLITEEMV--------TKMKPGSVIIDLA 294 (384)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCSCHHHH--------TTSCTTCEEEETT
T ss_pred HHHhCCCCEEEECCccCCCCCCeeeCHHHH--------hcCCCCCEEEEEe
Confidence 56677899999988 311 1 1 13333 3456889999988
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=75.62 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C---CHH---Hh-hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D---SPH---SL-ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~---~~~---~~-~~~~DiIi~~vp~~~~~~ 120 (351)
.++|.|+|+|.+|..+++.|.+.|++|+++|+++++++.++..|..+. . +.+ ++ +.++|+||+|++.+....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 368999999999999999999999999999999999998888775432 1 221 22 468999999997766555
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.++. .+ ..+.++..||...+. +.....+ ...|+..+
T Consensus 84 ~i~~----~a-r~~~p~~~Iiara~~-~~~~~~L----~~~Gad~V 119 (413)
T 3l9w_A 84 QLTE----MV-KEHFPHLQIIARARD-VDHYIRL----RQAGVEKP 119 (413)
T ss_dssp HHHH----HH-HHHCTTCEEEEEESS-HHHHHHH----HHTTCSSC
T ss_pred HHHH----HH-HHhCCCCeEEEEECC-HHHHHHH----HHCCCCEE
Confidence 5554 33 334455444544443 4433333 33455544
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.2e-06 Score=76.32 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHC---------CCeEE-EEeCCcccchh------HHhc--CCcccC--CHHHhhc--CC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA---------GYTVT-VFNRTLSKAQP------LLDI--GAHLAD--SPHSLAS--QS 106 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~---------g~~V~-~~dr~~~~~~~------~~~~--g~~~~~--~~~~~~~--~~ 106 (351)
|+||+|||+|.||..+++.|.+. +.+|+ ++|+++++.+. +... ....++ +.+++++ +.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i 81 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY 81 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence 68999999999999999999875 44544 66888766442 1111 233444 8888875 58
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh--HHHHHHHHHhcCCCcEE
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS--LASELSAAASSKNCSAI 166 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~--~~~~l~~~~~~~~~~~v 166 (351)
|+|+.|+|+..+-.+... .+..++..|+.|+..++. |- ..+++.+...+.++.+.
T Consensus 82 DvVv~~tp~~~h~~~a~~----~~~~aL~aGkhVv~~NKk-pla~~~~eL~~~A~~~g~~~~ 138 (327)
T 3do5_A 82 DVLIEASVTRVDGGEGVN----YIREALKRGKHVVTSNKG-PLVAEFHGLMSLAERNGVRLM 138 (327)
T ss_dssp SEEEECCCCC----CHHH----HHHHHHTTTCEEEECCSH-HHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEECCCCcccchhHHH----HHHHHHHCCCeEEecCch-hhHHHHHHHHHHHHhhCCcEE
Confidence 999999976544111111 222345678888866543 32 34566666666677655
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.03 E-value=8e-06 Score=78.54 Aligned_cols=111 Identities=23% Similarity=0.325 Sum_probs=74.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--CCcc----cC---CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--GAHL----AD---SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--g~~~----~~---~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
+++|.|+|+|.+|..++..|.+.|++|++++|++++.+.+.+. ++.. .. +..+++.++|+||.|+|...+.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~ 82 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 82 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence 4789999999999999999999999999999998877665443 1111 12 3345677899999999654332
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+.. .. +..++.+++.+...+. ...+.+...+.|+.++.+
T Consensus 83 -~i~~----a~---l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~g 122 (450)
T 1ff9_A 83 -TVIK----SA---IRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMNE 122 (450)
T ss_dssp -HHHH----HH---HHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEECS
T ss_pred -HHHH----HH---HhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEeC
Confidence 2222 11 2345667776654444 345666666677777654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.3e-06 Score=79.40 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=51.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC---eEEEEeCCcccchhHHhc-------CCcc-------cCCHHHhhcC--CCEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRTLSKAQPLLDI-------GAHL-------ADSPHSLASQ--SDVV 109 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~~~~~~~~~~~-------g~~~-------~~~~~~~~~~--~DiI 109 (351)
|+||+|+|+|.+|..++..|++.|. +|++++|+.++.+.+.+. .+.. ..+.++++++ +|+|
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence 5799999999999999999999883 899999999887766543 1211 1234455655 8999
Q ss_pred EEecCChh
Q 018694 110 FSIVGYPS 117 (351)
Q Consensus 110 i~~vp~~~ 117 (351)
|.|+|+..
T Consensus 81 in~ag~~~ 88 (405)
T 4ina_A 81 LNIALPYQ 88 (405)
T ss_dssp EECSCGGG
T ss_pred EECCCccc
Confidence 99996543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=72.00 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=62.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCC--CeEEEEeCCcccc--hhHHhcC----Ccc---cCCHHHhhcCCCEEEEecCCh-
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAG--YTVTVFNRTLSKA--QPLLDIG----AHL---ADSPHSLASQSDVVFSIVGYP- 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g--~~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~~~DiIi~~vp~~- 116 (351)
|||+|||+ |.+|..++..|+..| ++|+++|+++... ..+.+.. +.. .++.+++++++|+||++.+.+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 69999998 999999999999888 6899999986211 1111111 222 146777899999999998433
Q ss_pred --------------hHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 117 --------------SDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 117 --------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
..++++.+ .+..+. ++..++..+|
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~~----~i~~~~-p~a~viv~sN 118 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLTA----ACAQHC-PDAMICIISN 118 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHH----HHHHHC-TTSEEEECSS
T ss_pred CCCCcHHHHHHHHHHHHHHHHH----HHHhhC-CCeEEEEECC
Confidence 23455555 454444 6667776766
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=74.35 Aligned_cols=89 Identities=18% Similarity=0.330 Sum_probs=66.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc---c----CCHHHhhcCCCEEEEecCChhH----
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL---A----DSPHSLASQSDVVFSIVGYPSD---- 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~---~----~~~~~~~~~~DiIi~~vp~~~~---- 118 (351)
.+|.|+|+|.+|..++..+...|.+|+++||++++.+.+.+.+... . .+..+.+..+|+||.|++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~ 247 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI 247 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCe
Confidence 6899999999999999999999999999999999887776553221 1 1334556789999999954331
Q ss_pred --HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 119 --VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 119 --~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+..+ ..+.++..+++++..
T Consensus 248 li~~~~~--------~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 248 LVPASLV--------EQMRTGSVIVDVAVD 269 (361)
T ss_dssp CBCHHHH--------TTSCTTCEEEETTCT
T ss_pred ecCHHHH--------hhCCCCCEEEEEecC
Confidence 22222 345678899998753
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=72.70 Aligned_cols=74 Identities=11% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeE-EEEeCCcccchhHHhc-C------------------CcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTV-TVFNRTLSKAQPLLDI-G------------------AHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V-~~~dr~~~~~~~~~~~-g------------------~~~~~~~~~~~~~~D 107 (351)
|+||||+|+|.||..+++.|.+. +.+| .++|++++....+.+. | +.+..+.++++.++|
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD 81 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD 81 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence 56999999999999999999875 3465 4668876665444322 2 245568888888999
Q ss_pred EEEEecCChhHHHHH
Q 018694 108 VVFSIVGYPSDVRHV 122 (351)
Q Consensus 108 iIi~~vp~~~~~~~v 122 (351)
+|++|+|...+.+..
T Consensus 82 vV~~aTp~~~h~~~a 96 (334)
T 2czc_A 82 IIVDATPGGIGAKNK 96 (334)
T ss_dssp EEEECCSTTHHHHHH
T ss_pred EEEECCCccccHHHH
Confidence 999999776655433
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.8e-06 Score=72.22 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCCCeEEEEc-cChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 47 PTNTRIGWIG-TGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 47 ~~~~kI~iIG-~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
.+|++|.|.| .|.+|..+++.|.+.| ++|++++|++++.+.+...++.. ..+.+++++.+|+||.+.+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~ 97 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT 97 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence 3456788887 6999999999999999 89999999987765543322211 1233455678888888774
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0001 Score=64.82 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=63.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhcCCcccCCHHHhhc-CCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLAS-QSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|||+|+|+ |.||..+++.+.+. +++++ ++|++ +++++++. ++|+||-++ .+..+.+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT-~p~a~~~~~~- 63 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFT-HPDVVMGNLE- 63 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECS-CTTTHHHHHH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEcc-ChHHHHHHHH-
Confidence 68999996 99999999998865 88876 55654 23455443 789999899 5555555554
Q ss_pred CCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcC-CCcEEeccCC
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSK-NCSAIDAPVS 171 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~-~~~~v~~pv~ 171 (351)
.. +..+.-+|..+++.. ...+.+.+...+. ++.++-+|++
T Consensus 64 ---~a---~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~ 105 (245)
T 1p9l_A 64 ---FL---IDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF 105 (245)
T ss_dssp ---HH---HHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred ---HH---HHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 22 235555665666533 3233444444433 5666666666
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=73.15 Aligned_cols=93 Identities=11% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCC--CeEEEEeCCccc--chhHHhcCC--cc-----cCCHHHhhcCCCEEEEecCC
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAG--YTVTVFNRTLSK--AQPLLDIGA--HL-----ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g--~~V~~~dr~~~~--~~~~~~~g~--~~-----~~~~~~~~~~~DiIi~~vp~ 115 (351)
.+|||+|+| +|.+|..++..|...| ++|+++|++++. ...+.+... .+ .++..++++++|+||++.+.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 358999999 7999999999999988 799999988761 111222111 11 22556778999999999853
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+ ..++++++ .+..+ .++..++..+|
T Consensus 87 ~~~~g~~r~dl~~~N~~~~~~i~~----~i~~~-~p~~~viv~SN 126 (326)
T 1smk_A 87 PRKPGMTRDDLFKINAGIVKTLCE----GIAKC-CPRAIVNLISN 126 (326)
T ss_dssp CCCSSCCCSHHHHHHHHHHHHHHH----HHHHH-CTTSEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHhh-CCCeEEEEECC
Confidence 3 22444554 44443 35666666655
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.5e-05 Score=70.60 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=62.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHhc----C----CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLDI----G----AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~~----g----~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+|.+|..+|..|...+. ++.++|+++++.+. +.+- + +....+. +.++++|+||++...
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecCC
Confidence 799999999999999999987765 89999999765432 2110 1 1122344 457899999998843
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.. ++..+ .++.+++..+|-
T Consensus 80 prkpGmtR~dLl~~Na~I~~~i~~----~i~~~-~p~aivlvvsNP 120 (294)
T 2x0j_A 80 ARKPGMTRLDLAHKNAGIIKDIAK----KIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHH----HHHTT-STTCEEEECSSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHHH----HHHhc-CCceEEEEecCc
Confidence 21 2445555 55554 467777778773
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=4.9e-05 Score=68.60 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~ 125 (351)
.+||+|+|+ |.||..+++.+.+.|++ .++..++.+... ...|+.++.+++++.. ++|++++++ ++....+++.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~v-p~~~~~~~~~- 82 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFV-PAPAAADAAL- 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECC-CHHHHHHHHH-
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEec-CHHHHHHHHH-
Confidence 378999998 99999999999988998 444555543111 1247888999999988 899999999 6666666666
Q ss_pred CCCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v 166 (351)
+.... . -+.+|..+.+.+.. .+++.+..++.++.++
T Consensus 83 ---ea~~~-G-i~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi 119 (288)
T 1oi7_A 83 ---EAAHA-G-IPLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (288)
T ss_dssp ---HHHHT-T-CSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred ---HHHHC-C-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 44432 1 12345466665443 3466666666676554
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.1e-05 Score=73.49 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=69.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
++++|+|+|.+|..+|+.|+..|.+|+++|+++.+.......|..+ .+.+++...+|+++.+......+...
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~e------- 337 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIMLD------- 337 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCHH-------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhHH-------
Confidence 6899999999999999999999999999999988777666666643 57788888999999988543333221
Q ss_pred cccCCCCCcEEEecCCC
Q 018694 130 ALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~ 146 (351)
....++++.+|++.+..
T Consensus 338 ~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 338 HMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp HHTTSCTTEEEEESSST
T ss_pred HHHhcCCCeEEEEcCCC
Confidence 22345688899998865
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=6e-05 Score=70.08 Aligned_cols=167 Identities=15% Similarity=0.129 Sum_probs=87.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC----CeEE-EEeCCcccchhHHhc--CCcccCCHHHhhcCC--------------
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG----YTVT-VFNRTLSKAQPLLDI--GAHLADSPHSLASQS-------------- 106 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g----~~V~-~~dr~~~~~~~~~~~--g~~~~~~~~~~~~~~-------------- 106 (351)
.++||+|||+|.||..++..|.+.. .+|+ ++|+... .+.+. |+..+++.++++.+.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~---~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS---LISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBE---EECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChh---hhccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 3579999999999999999998853 3543 5565432 22233 454445566555432
Q ss_pred ------CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC----ChhHHHHHHHHHhcCCCcEEe-ccCCCCch
Q 018694 107 ------DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS----EPSLASELSAAASSKNCSAID-APVSGGDR 175 (351)
Q Consensus 107 ------DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~----~~~~~~~l~~~~~~~~~~~v~-~pv~~~~~ 175 (351)
|+|+.|+|...+.+.. ..++..|+.||..+.. .....+++. ...+.++.|.- +.+.
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~--------~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg---- 146 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFY--------TKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVG---- 146 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTH--------HHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTT----
T ss_pred hhccCCcEEEEcCCChHHHHHH--------HHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccc----
Confidence 6888888655433322 2344567777754332 113334444 33334444321 1111
Q ss_pred hhccCceeEEecCCHHHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCCCH
Q 018694 176 GAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTM------VGLVEGMVYAHKAGLNV 247 (351)
Q Consensus 176 ~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~------~~~~Ea~~la~~~Gi~~ 247 (351)
++- ...+.++++++.-+.+..+..+-++.. |++..-+. ..|.|++.-|++.|+..
T Consensus 147 -----------~gi-Pii~~l~~~l~~G~~I~~I~GIlnGT~-----nyil~~m~~~~~~g~~f~~~l~eAq~~GyaE 207 (358)
T 1ebf_A 147 -----------AGL-PIISFLREIIQTGDEVEKIEGIFSGTL-----SYIFNEFSTSQANDVKFSDVVKVAKKLGYTE 207 (358)
T ss_dssp -----------TTS-SCHHHHHHHHHHTCCEEEEEEECCHHH-----HHHHHHHSCSSCCCCCHHHHHHHHHHHTCSC
T ss_pred -----------cCC-cHHHHHHHHHHcCCCeEEEEEEEeecc-----eeeecccccccccCCCHHHHHHHHHHcCCCC
Confidence 111 245677777754334444432212221 22222221 34677777788888554
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-05 Score=70.62 Aligned_cols=107 Identities=12% Similarity=0.068 Sum_probs=71.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc-CCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS-QSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|+|+|+|++|...++.+...|..|+++|+++++.+...+.+.... +.+++.. +||+++-|--...-..+.+.
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~---- 250 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR---- 250 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH----
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh----
Confidence 68999999999999999999999999999998765222223355544 5667666 89999876522121222222
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
.+ +.++|++.+|+.....+. .+.+.+.++.++.
T Consensus 251 ~l-----k~~iVie~AN~p~t~~eA-~~~L~~~gIlv~P 283 (355)
T 1c1d_A 251 TL-----DCSVVAGAANNVIADEAA-SDILHARGILYAP 283 (355)
T ss_dssp HC-----CCSEECCSCTTCBCSHHH-HHHHHHTTCEECC
T ss_pred hC-----CCCEEEECCCCCCCCHHH-HHHHHhCCEEEEC
Confidence 22 357899999874322233 4666667776664
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=71.61 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=59.8
Q ss_pred CCeEEEEccChhhHHHHHHHHH--CCCe-EEEEeCCccc-chhHH-hcCCcc-cCCHHHhhc-----CCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN--AGYT-VTVFNRTLSK-AQPLL-DIGAHL-ADSPHSLAS-----QSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~--~g~~-V~~~dr~~~~-~~~~~-~~g~~~-~~~~~~~~~-----~~DiIi~~vp~~~ 117 (351)
++||+|||+|.+|..++..+.+ .+.+ +.++|+++++ .+.+. ..|... .++.+++++ +.|+||+|+|...
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~ 83 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA 83 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHH
Confidence 4799999999999999999965 3455 4577999877 44543 336543 455666654 4799999996444
Q ss_pred HHHHHhhCCCCCcccCCCC--CcEEEecCC
Q 018694 118 DVRHVLLHPSSGALSGLRP--GGIIVDMTT 145 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~--~~~ii~~s~ 145 (351)
+.+.+.. . +.. |+.|++.+.
T Consensus 84 h~~~a~~-----a---l~a~~Gk~Vi~ekp 105 (312)
T 1nvm_B 84 HVQNEAL-----L---RQAKPGIRLIDLTP 105 (312)
T ss_dssp HHHHHHH-----H---HHHCTTCEEEECST
T ss_pred HHHHHHH-----H---HHhCCCCEEEEcCc
Confidence 4443332 2 234 777887553
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-05 Score=71.78 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=64.7
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCC----cccchh----HHhc------CCcccCCHHHhhcC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRT----LSKAQP----LLDI------GAHLADSPHSLASQ 105 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~----~~~~~~----~~~~------g~~~~~~~~~~~~~ 105 (351)
..|||+|+|+ |.+|..++..|...|+ +|.++|++ +++.+. +.+. .+...++..+++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 3479999997 9999999999998885 89999998 443332 2221 12334677888999
Q ss_pred CCEEEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 106 SDVVFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 106 ~DiIi~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+|+||++...+. .+++++. .+..+..++..+|..||
T Consensus 84 aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~----~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 84 ADVALLVGARPRGPGMERKDLLEANAQIFTVQGK----AIDAVASRNIKVLVVGN 134 (329)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHHSCTTCEEEECSS
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhcCCCeEEEEccC
Confidence 999999874221 1344554 44444336667777776
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=73.66 Aligned_cols=108 Identities=23% Similarity=0.334 Sum_probs=71.8
Q ss_pred CeEEEEccChhhHHHHHHHHH----------CCCeE-EEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCC-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN----------AGYTV-TVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGY- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~----------~g~~V-~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~- 115 (351)
+||+|||+|.+|..+++.|.+ .+.+| .++|+++++.+.+. .+...+++.+++++ +.|+|++|+|.
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~~ 89 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGGL 89 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence 489999999999999987764 24454 46799987766653 35677889999986 47999999975
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEE
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v 166 (351)
..+.+-+.. ++..|+.|+..... .....+++.+...+.++.+.
T Consensus 90 ~~h~~~~~~--------AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~ 133 (444)
T 3mtj_A 90 EPARELVMQ--------AIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVT 133 (444)
T ss_dssp TTHHHHHHH--------HHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHH--------HHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEE
Confidence 344332322 23467777754421 11233456666666677764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.8e-05 Score=69.61 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc----CCHHHhhcCCCEEEEecCC
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA----DSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~----~~~~~~~~~~DiIi~~vp~ 115 (351)
+|||||.|.|+|.+|..++..|.+.|++|++.+|++++.+.+...++... .+++ +.++|+||.|...
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 45789999999999999999999999999999999887766665543321 1222 6789999999854
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.8e-05 Score=68.22 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=48.6
Q ss_pred CeEEEEccChhhHHHHHH--HHHCCCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAH--LLNAGYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~--L~~~g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||+|||+|++|..+++. +...|++++ ++|.++++....... .+...+++++++++.|++++|+ ++....+++.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAv-Ps~~~~ei~~ 163 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTV-PAVAAQSITD 163 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECS-CHHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEec-CchhHHHHHH
Confidence 679999999999999994 445577654 779998876553321 2334567788776669999999 4443344444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.1e-05 Score=75.78 Aligned_cols=69 Identities=16% Similarity=0.336 Sum_probs=53.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcc-cC---C---HHHh-hcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHL-AD---S---PHSL-ASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~-~~---~---~~~~-~~~~DiIi~~vp~~ 116 (351)
+.|||-|+|+|.+|..+|+.|.+.||+|+++|.++++++.+.+. ++.. .. + +.++ ++++|+++.+++.+
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 45899999999999999999999999999999999999888765 4322 11 2 2222 46899988888443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00015 Score=65.58 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=75.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc-hhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~ 125 (351)
.++.|+|+ |.||..+.+.+.+.|++ .++..++.+. +.+ .|+..+.+.+++.. ++|++++++ ++....+++.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~Dv~ii~v-p~~~~~~~v~- 88 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNV--HGVPVFDTVKEAVKETDANASVIFV-PAPFAKDAVF- 88 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEE--TTEEEESSHHHHHHHHCCCEEEECC-CHHHHHHHHH-
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCEEEEcc-CHHHHHHHHH-
Confidence 57999999 99999999999999998 5666666542 111 47888999999988 899999999 6666666665
Q ss_pred CCCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v 166 (351)
+.... .-+.+|..+.+.+. ..+++.+..++.++.++
T Consensus 89 ---ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 89 ---EAIDA--GIELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (294)
T ss_dssp ---HHHHT--TCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred ---HHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 44431 12234556666443 34566666666676554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.69 E-value=3.2e-05 Score=67.49 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc----CCHH---Hh-hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA----DSPH---SL-ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~----~~~~---~~-~~~~DiIi~~vp~~~~~~ 120 (351)
.++|.|+|+|.+|..+++.|.+.|+ |+++++++++++.+. .|+.+. ++.+ ++ +.++|.||++++.+....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~ 86 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI 86 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH
Confidence 3689999999999999999999999 999999998887776 554321 1222 22 568999999996654433
Q ss_pred HHhhCCCCCcccCCCCC-cEEEecC
Q 018694 121 HVLLHPSSGALSGLRPG-GIIVDMT 144 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~-~~ii~~s 144 (351)
.++. ....+.++ .++..+.
T Consensus 87 ~~~~-----~a~~~~~~~~iia~~~ 106 (234)
T 2aef_A 87 HCIL-----GIRKIDESVRIIAEAE 106 (234)
T ss_dssp HHHH-----HHHHHCSSSEEEEECS
T ss_pred HHHH-----HHHHHCCCCeEEEEEC
Confidence 3332 22233455 5555544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.3e-05 Score=71.38 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCeEEEEccChh-hHHHHHHHHHCCCeEEEEeCCcccc----hhHHhcCCcc-----c--CCHHHhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVM-GRSMCAHLLNAGYTVTVFNRTLSKA----QPLLDIGAHL-----A--DSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~m-G~~ia~~L~~~g~~V~~~dr~~~~~----~~~~~~g~~~-----~--~~~~~~~~~~DiIi~~vp~~ 116 (351)
..++.|||.|.| |..+|..|...|..|++++|+..+. +.+...-... + .++++.+.++|+||.+++.+
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p 256 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE 256 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCC
Confidence 368999999976 9999999999999999999984432 2222111111 1 46778889999999999653
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.- ++. ...++++.++||++..
T Consensus 257 ~~---vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 257 NY---KFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp TC---CBC------TTTSCTTEEEEECSSS
T ss_pred cc---eeC------HHHcCCCeEEEEcCCC
Confidence 31 122 1235789999999853
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=57.37 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=76.1
Q ss_pred CCCeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 48 TNTRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 48 ~~~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+.+|+|||+ +..|..+.+.|.+.|++|+-++...+.+ .|...+.++.++-. .|++++++ ++..+.+++
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~-p~~~v~~~v 75 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYI-NPQNQLSEY 75 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECS-CHHHHGGGH
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEe-CHHHHHHHH
Confidence 3568999998 5689999999999999988888654333 36777888888877 99999999 778887777
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+ ++... ..+.+++ +.+.. .+++.+.+++.|++++
T Consensus 76 ~----e~~~~-g~k~v~~--~~G~~--~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 76 N----YILSL-KPKRVIF--NPGTE--NEELEEILSENGIEPV 109 (122)
T ss_dssp H----HHHHH-CCSEEEE--CTTCC--CHHHHHHHHHTTCEEE
T ss_pred H----HHHhc-CCCEEEE--CCCCC--hHHHHHHHHHcCCeEE
Confidence 7 55542 2234444 44432 3577777777888887
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=67.40 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=69.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC----ccc----chh----HHhc--CCcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT----LSK----AQP----LLDI--GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~----~~~----~~~----~~~~--g~~~~~~~~~~~~~~DiIi~~v 113 (351)
..||.|+|+|.+|..+++.|...|. +|+++||+ .++ +.. +... ......++++++..+|++|-+.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~S 271 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS 271 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeC
Confidence 3789999999999999999999998 79999998 555 222 2222 1223567999999999999988
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~ 148 (351)
.+.-..+++++ .+ .++.+|++++|-.|
T Consensus 272 ap~l~t~emVk----~M----a~~pIIfalSNPt~ 298 (388)
T 1vl6_A 272 RGNILKPEWIK----KM----SRKPVIFALANPVP 298 (388)
T ss_dssp CSSCSCHHHHT----TS----CSSCEEEECCSSSC
T ss_pred CCCccCHHHHH----hc----CCCCEEEEcCCCCC
Confidence 54444566666 43 36779999998654
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.7e-05 Score=68.70 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=68.9
Q ss_pred CeEEEEccChhhHHHHHHHHHC--------CCeE-EEEeCCcccchh-H-----Hh----cCCc-ccC---CHHHhh-cC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--------GYTV-TVFNRTLSKAQP-L-----LD----IGAH-LAD---SPHSLA-SQ 105 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--------g~~V-~~~dr~~~~~~~-~-----~~----~g~~-~~~---~~~~~~-~~ 105 (351)
+||+|||+|.||..++..|.+. +.+| .++|+++++.+. + .+ .++. .++ +.++++ .+
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 6899999999999999998764 2454 467898876654 2 11 1332 344 788877 35
Q ss_pred CCEEEEecCCh---hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEE
Q 018694 106 SDVVFSIVGYP---SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAI 166 (351)
Q Consensus 106 ~DiIi~~vp~~---~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v 166 (351)
.|+|+.|+|.. ....+.+. .++..|+.|+..+... ....+++.+...+.++.+.
T Consensus 87 iDvVv~~t~~~~~~~~~~~~~~-------~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~ 144 (331)
T 3c8m_A 87 FDIVVDATPASADGKKELAFYK-------ETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIR 144 (331)
T ss_dssp CSEEEECSCCCSSSHHHHHHHH-------HHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEECCCCCCccchHHHHHH-------HHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEE
Confidence 89999999764 22222222 2345788888654421 2334455555555566543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=6.9e-05 Score=64.44 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=48.0
Q ss_pred CCCe-EEEEc-cChhhHHHHHHHH-HCCCeEEEEeCCcc-cchhHHhc--CCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 48 TNTR-IGWIG-TGVMGRSMCAHLL-NAGYTVTVFNRTLS-KAQPLLDI--GAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~k-I~iIG-~G~mG~~ia~~L~-~~g~~V~~~dr~~~-~~~~~~~~--g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
+||| |.|.| .|.+|..+++.|. +.|++|++.+|+++ +.+.+... ++.. ..+..++++.+|+||.+..
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence 3455 99998 5999999999999 89999999999988 77666322 1111 1123345567777777774
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=65.56 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=61.9
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCC--eEEEEeC--CcccchhH----Hhc-----CCcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGY--TVTVFNR--TLSKAQPL----LDI-----GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~--~V~~~dr--~~~~~~~~----~~~-----g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|+| +|.+|..++..|...|+ ++.++|+ ++++++.. .+. ...+..+..+.++++|+||++.+.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 6999999 99999999999998876 7999999 76554321 111 122222336678899999999853
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++++ .+..+ .++..++..+|-
T Consensus 81 ~~~~g~~r~dl~~~N~~i~~~i~~----~i~~~-~p~~~viv~SNP 121 (303)
T 1o6z_A 81 PRQPGQTRIDLAGDNAPIMEDIQS----SLDEH-NDDYISLTTSNP 121 (303)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH----HHHTT-CSCCEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCcEEEEeCCh
Confidence 31 3445555 44444 466677766653
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=6e-05 Score=69.55 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCeEEEEccChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHH-------------------hcCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLL-------------------DIGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~D 107 (351)
|+||||+|+|.+|..+++.|.+ .+++++ +.+++++...... ..++.+..+.+++..++|
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD 80 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD 80 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCC
Confidence 5799999999999999999987 345654 4576644332222 123333346677777899
Q ss_pred EEEEecCChhHHH
Q 018694 108 VVFSIVGYPSDVR 120 (351)
Q Consensus 108 iIi~~vp~~~~~~ 120 (351)
+||.|+|.....+
T Consensus 81 vV~~atp~~~~~~ 93 (337)
T 1cf2_P 81 IVIDCTPEGIGAK 93 (337)
T ss_dssp EEEECCSTTHHHH
T ss_pred EEEECCCchhhHH
Confidence 9999996654433
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=70.86 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC---------CeE-EEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG---------YTV-TVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g---------~~V-~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
++||+|||+|.||..+++.+.+.. .+| .++|++.++.+.+. ....+++.++++ +.|+|+.|+|....
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~ 79 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEA 79 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHH
Confidence 378999999999999999998753 454 46788876554331 123567888888 99999999976544
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhc
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASS 160 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~ 160 (351)
..+.+. ..+..|+.|+..+.. .....+++.+...+
T Consensus 80 a~~~~~-------~AL~aGKhVVtaNkkpla~~~~eL~~~A~~ 115 (332)
T 2ejw_A 80 PLRLVL-------PALEAGIPLITANKALLAEAWESLRPFAEE 115 (332)
T ss_dssp HHHHHH-------HHHHTTCCEEECCHHHHHHSHHHHHHHHHT
T ss_pred HHHHHH-------HHHHcCCeEEECCchhHHHHHHHHHHHHHh
Confidence 443433 233467777754322 01233455554443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=62.88 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC-cc-----cCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA-HL-----ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~-~~-----~~~~~~~~~~~DiIi~~vp 114 (351)
..|||.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+...++ .. ..+..+.+..+|+||.+..
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 3479999987 999999999999999999999999988777665444 22 1344566677888887774
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=67.22 Aligned_cols=117 Identities=18% Similarity=0.053 Sum_probs=74.2
Q ss_pred CCCCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc--cchhHHhcCCccc--CCHHHhh-cCCCEEEEec--CC-hh
Q 018694 47 PTNTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS--KAQPLLDIGAHLA--DSPHSLA-SQSDVVFSIV--GY-PS 117 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~--~~~~~~~~g~~~~--~~~~~~~-~~~DiIi~~v--p~-~~ 117 (351)
+.|+||.|||.|.+|.+ +|..|.+.|++|+++|+.+. ..+.+.+.|+.+. .+.+++. .++|+||..- |+ ..
T Consensus 2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p 81 (326)
T 3eag_A 2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMD 81 (326)
T ss_dssp -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCH
T ss_pred CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCH
Confidence 35789999999999995 99999999999999998743 3456777787654 3445554 4789998853 22 22
Q ss_pred HHHHHhhCCC-----CCcc-cCCCC--CcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 118 DVRHVLLHPS-----SGAL-SGLRP--GGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 118 ~~~~v~~~~~-----~~i~-~~l~~--~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.+..+..... .++. ..+.+ ..+-|.-++|...++.-+...+...|.
T Consensus 82 ~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 82 VVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp HHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 3333322100 0011 11222 336677777877776667777765553
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00026 Score=64.09 Aligned_cols=107 Identities=20% Similarity=0.147 Sum_probs=73.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc-hhHHhcCCcccCCHHHhhc--C-CCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLAS--Q-SDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~~~~g~~~~~~~~~~~~--~-~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.|+|+ |.||..+.+.+.+.|++ .++..+|.+. +. -.|+..+.+++++.. . +|++++++ ++..+.+++.
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~v-p~~~~~~~v~ 89 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFV-PAPFAPDAVY 89 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECC-CGGGHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEec-CHHHHHHHHH
Confidence 67899998 99999999999988998 5566666542 11 147888999999886 5 99999999 5555565665
Q ss_pred CCCCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEE
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAI 166 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v 166 (351)
+.... .-+.+|..+++.+. ..+++.+..++.++.++
T Consensus 90 ----ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 90 ----EAVDA--GIRLVVVITEGIPVHDTMRFVNYARQKGATII 126 (297)
T ss_dssp ----HHHHT--TCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred ----HHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 44431 12234546666544 34466666666676544
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.60 E-value=5.6e-05 Score=69.31 Aligned_cols=114 Identities=15% Similarity=0.032 Sum_probs=67.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-------CCeEE-EEeCCcccch------h----HHhcC-Ccc-cCCHHHhhc--CC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-------GYTVT-VFNRTLSKAQ------P----LLDIG-AHL-ADSPHSLAS--QS 106 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-------g~~V~-~~dr~~~~~~------~----~~~~g-~~~-~~~~~~~~~--~~ 106 (351)
+.||+|||+|.||+.+++.|.+. +.+|+ ++|++.+... . ..+.| +.. .-+.++++. +.
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~i 83 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAA 83 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCC
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCC
Confidence 36899999999999999999873 33544 5577765321 1 11223 211 115566664 58
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEE
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAI 166 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v 166 (351)
|+|+.|+|.....+.... .+..++..|+.||..+.... ...+++.+...+.++.+.
T Consensus 84 DvVVe~T~~~~~~~pa~~----~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~ 140 (325)
T 3ing_A 84 DLLVDCTPASRDGVREYS----LYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIR 140 (325)
T ss_dssp SEEEECCCCCSSSHHHHH----HHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEECCCCccccchHHH----HHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEE
Confidence 999999965433222122 22234457888887665311 234456666555676554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=64.70 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=31.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +|+++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 589999999999999999999998 899999986
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00013 Score=64.65 Aligned_cols=73 Identities=26% Similarity=0.460 Sum_probs=59.0
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||.|. +|..+|..|...|..|+++++. +.++++.+.++|+||.+++.+. ++.
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~----~I~---- 208 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPG----FLN---- 208 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTT----CBC----
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCc----ccc----
Confidence 6899999986 8999999999999999999864 2567888899999999997644 222
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..+++++.+|||++..
T Consensus 209 --~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 209 --REMVTPGSVVIDVGIN 224 (276)
T ss_dssp --GGGCCTTCEEEECCCE
T ss_pred --HhhccCCcEEEEeccC
Confidence 1345789999998843
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00016 Score=66.55 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=58.3
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHH-CCCeEEEEeCCc---ccchhHH-------hc-CCcccC--CHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLN-AGYTVTVFNRTL---SKAQPLL-------DI-GAHLAD--SPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~-~g~~V~~~dr~~---~~~~~~~-------~~-g~~~~~--~~~~~~~~~DiIi~~ 112 (351)
-|+||+|+| .|.+|..+.+.|.+ ..+++..+..+. ..-+.+. .. ...+.. +.+++..++|+||+|
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a 82 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLA 82 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEEC
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEEC
Confidence 368999999 59999999999988 445776553322 2112222 11 223322 445554789999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ +.....+... .+ +..|..+||+|+-
T Consensus 83 ~-p~~~s~~~~~----~~---~~~g~~vIDlSa~ 108 (337)
T 3dr3_A 83 T-AHEVSHDLAP----QF---LEAGCVVFDLSGA 108 (337)
T ss_dssp S-CHHHHHHHHH----HH---HHTTCEEEECSST
T ss_pred C-ChHHHHHHHH----HH---HHCCCEEEEcCCc
Confidence 9 4444454554 33 3468899999974
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=66.25 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEE-EEeCCcccchhHHh-cCC-----------------cccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVT-VFNRTLSKAQPLLD-IGA-----------------HLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~-~~dr~~~~~~~~~~-~g~-----------------~~~~~~~~~~~~~Di 108 (351)
|+||||+|+|.||..+++.|.+.. .+|+ +.|++++....... .|+ .+..+.+++..++|+
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDv 80 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI 80 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCE
Confidence 469999999999999999998653 4654 56777554322222 133 233344555567999
Q ss_pred EEEecCChhH
Q 018694 109 VFSIVGYPSD 118 (351)
Q Consensus 109 Ii~~vp~~~~ 118 (351)
||.|+|....
T Consensus 81 V~~aTp~~~s 90 (340)
T 1b7g_O 81 VVDTTPNGVG 90 (340)
T ss_dssp EEECCSTTHH
T ss_pred EEECCCCchh
Confidence 9999966543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=64.41 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=61.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHC-C--CeEEEEeCCcccch----hHHhcCC--ccc----CCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNA-G--YTVTVFNRTLSKAQ----PLLDIGA--HLA----DSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~-g--~~V~~~dr~~~~~~----~~~~~g~--~~~----~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+||| +|.+|..++..|... + .+++++|+++ +.+ .+..... .+. ++..+.++++|+||++.+.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 7999999 899999999999875 4 4899999986 322 2222211 222 2456778899999999843
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.. .+..+ .++.+++..+|-
T Consensus 80 ~rkpG~~R~dll~~N~~I~~~i~~----~i~~~-~p~a~vlvvtNP 120 (312)
T 3hhp_A 80 ARKPGMDRSDLFNVNAGIVKNLVQ----QVAKT-CPKACIGIITNP 120 (312)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHH----HHHHH-CTTSEEEECSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCcEEEEecCc
Confidence 32 1334444 44444 467788888763
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=63.37 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=49.8
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.||||.|.| +|.+|..+++.|.+.|++|++.+|++++.+.+... .+.-..+..++++++|+||.|...
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 368999998 59999999999999999999999998776543211 111112334566788988888743
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00038 Score=59.36 Aligned_cols=65 Identities=29% Similarity=0.317 Sum_probs=49.4
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----cCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||.|.| +|.+|..+++.|.+.|++|++++|++++.+.+. .++.. .+...+.+..+|+||.|...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 6899998 599999999999999999999999987765543 22221 11111567789999998844
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00017 Score=64.77 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=57.4
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHH--HhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPH--SLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~--~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++.|||.|. +|..++..|...|..|+++++... +++ +.+.++|+||.+++.+.. +.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I~-- 225 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----VK-- 225 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----BC--
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----Cc--
Confidence 6899999987 799999999999999999987421 344 778999999999976432 22
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
..+++++.+|||++.
T Consensus 226 ----~~~vk~GavVIDvgi 240 (300)
T 4a26_A 226 ----GEWIKEGAAVVDVGT 240 (300)
T ss_dssp ----GGGSCTTCEEEECCC
T ss_pred ----HHhcCCCcEEEEEec
Confidence 134578999999884
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00052 Score=62.29 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=75.7
Q ss_pred CeEEEE-cc-ChhhHHHHHHHHHCCCeEEEEeCCcccch-hHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWI-GT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-PLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iI-G~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+++|| |+ |.+|..+++.|.+.|++ .+++.+|.+.. . -.|+.++.+++|+.. .+|++++++ ++....++++
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~v-P~~~~~~~~~ 89 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYV-PPPFAAAAIN 89 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECC-CHHHHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEec-CHHHHHHHHH
Confidence 458888 98 99999999999999999 45666665421 1 247888999999988 899999999 6666666666
Q ss_pred CCCCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcC-CCcEE
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSK-NCSAI 166 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~-~~~~v 166 (351)
++... .- +.++.++.+.+. ..+++.+..++. ++.++
T Consensus 90 ----e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li 127 (305)
T 2fp4_A 90 ----EAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127 (305)
T ss_dssp ----HHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred ----HHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence 44432 11 345556766543 233677777777 77765
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0005 Score=63.44 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=48.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccch---------------------hHHhcCCcccCCHHHhhcC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQ---------------------PLLDIGAHLADSPHSLASQ 105 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~---------------------~~~~~g~~~~~~~~~~~~~ 105 (351)
|+||||+|+|.+|..+++.|.+. +++|+ +.|++++... .+...++.+..+.+++..+
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 56999999999999999999876 46755 4454433221 1222234444455666678
Q ss_pred CCEEEEecCChhHHH
Q 018694 106 SDVVFSIVGYPSDVR 120 (351)
Q Consensus 106 ~DiIi~~vp~~~~~~ 120 (351)
+|+||.|+|.....+
T Consensus 82 vDiV~eatg~~~s~~ 96 (343)
T 2yyy_A 82 ADIVVDGAPKKIGKQ 96 (343)
T ss_dssp CSEEEECCCTTHHHH
T ss_pred CCEEEECCCccccHH
Confidence 999999996554344
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00031 Score=64.95 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=55.4
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh--------cCCcccCCHHHhhcCCCEEEEecCChhH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD--------IGAHLADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~--------~g~~~~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|+||+|+| .|.+|..+.+.|.+... +++.+.+....-+.+.+ ..+.. .+.++ ..++|+||+|+|....
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~~vDvV~~a~g~~~s 81 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-LEPADILVLALPHGVF 81 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-CCCCSEEEECCCTTHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-hcCCCEEEEcCCcHHH
Confidence 57999999 69999999999987654 76655443222122211 11222 23334 4789999999965543
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+... .. +..|..+||+++-
T Consensus 82 -~~~a~----~~---~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 82 -AREFD----RY---SALAPVLVDLSAD 101 (345)
T ss_dssp -HHTHH----HH---HTTCSEEEECSST
T ss_pred -HHHHH----HH---HHCCCEEEEcCcc
Confidence 33443 22 3467789999873
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00032 Score=62.47 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=58.1
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||.|. +|..++..|...|..|+++++. +.++++.+.++|+||.+++.+.. +.
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~---- 219 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----IT---- 219 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC----
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----CC----
Confidence 6899999988 7999999999999999999864 23677888999999999965432 22
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
...++++.+|||+..
T Consensus 220 --~~~vk~GavVIDvgi 234 (285)
T 3l07_A 220 --ADMVKEGAVVIDVGI 234 (285)
T ss_dssp --GGGSCTTCEEEECCC
T ss_pred --HHHcCCCcEEEEecc
Confidence 134578999999874
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00035 Score=62.27 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=58.5
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||.|. +|..+|..|...|..|+++++.. .++.+.+.++|+||.+++.+. ++.
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI~---- 217 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FIP---- 217 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CBC----
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cCC----
Confidence 6899999997 69999999999999999997543 467888899999999996554 232
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
...++++.+|||++.
T Consensus 218 --~~~vk~GavVIDVgi 232 (288)
T 1b0a_A 218 --GDWIKEGAIVIDVGI 232 (288)
T ss_dssp --TTTSCTTCEEEECCC
T ss_pred --HHHcCCCcEEEEccC
Confidence 123578999999884
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00052 Score=65.20 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=78.7
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC---eEEEEe----CC--c
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY---TVTVFN----RT--L 82 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~d----r~--~ 82 (351)
.++.+++ +|+..++.+.+.... .. ....||.|+|+|.+|.+++..|.+.|. +|+++| |+ .
T Consensus 160 dD~~gtg-ntd~aG~~~AL~~~g-----~~-----l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~ 228 (439)
T 2dvm_A 160 DDQQGTA-AVVLAGLLNALKVVG-----KK-----ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRIL 228 (439)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHT-----CC-----TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEEC
T ss_pred CCCcEEe-ehHHHHHHHHHHHhC-----CC-----ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCcc
Confidence 4566777 889999888875431 11 112579999999999999999999998 799999 87 2
Q ss_pred ccchh---HHh-------c-CCc-ccCCHHHhhcCCCEEEEecCC--hhHHHHHhhCCCCCcccCCCCCcEEEecCCCC
Q 018694 83 SKAQP---LLD-------I-GAH-LADSPHSLASQSDVVFSIVGY--PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 83 ~~~~~---~~~-------~-g~~-~~~~~~~~~~~~DiIi~~vp~--~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~ 147 (351)
.+.+. +.+ . +.. ...++.+.+.++|++|-|+|. ....++.+. . +.++.+|+++++-.
T Consensus 229 ~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~----~----m~~~~iVfDLynP~ 299 (439)
T 2dvm_A 229 TSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIE----K----MNEDAIVFPLANPV 299 (439)
T ss_dssp CTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHT----T----SCTTCEEEECCSSS
T ss_pred ccccchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHH----h----cCCCCEEEECCCCC
Confidence 22212 211 1 111 245678888999999999965 222223333 2 34677999996643
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00036 Score=62.64 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=59.4
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||.|. +|..+|..|...|..|+++++. +.++.+.+.++|+||.+++.+.. +.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~---- 223 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----VK---- 223 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC----
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----CC----
Confidence 6899999996 7999999999999999999754 34778888999999999976542 22
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
...++++.+|||++.-
T Consensus 224 --~~~vk~GavVIDVgi~ 239 (301)
T 1a4i_A 224 --GEWIKPGAIVIDCGIN 239 (301)
T ss_dssp --GGGSCTTCEEEECCCB
T ss_pred --HHHcCCCcEEEEccCC
Confidence 1235689999999864
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00038 Score=62.02 Aligned_cols=72 Identities=29% Similarity=0.365 Sum_probs=58.4
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||.|. +|..++..|...|..|+++++. +.++++.+.++|+||.+++.+.. +.
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~---- 218 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNL----LR---- 218 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEECSSCTTC----BC----
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhhcCCEEEECCCCCCc----CC----
Confidence 6899999987 6999999999999999999864 24677888999999999975432 22
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
..+++++.+|||+..
T Consensus 219 --~~~vk~GavVIDVgi 233 (285)
T 3p2o_A 219 --SDMVKEGVIVVDVGI 233 (285)
T ss_dssp --GGGSCTTEEEEECCC
T ss_pred --HHHcCCCeEEEEecc
Confidence 134578999999874
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00031 Score=62.42 Aligned_cols=72 Identities=29% Similarity=0.414 Sum_probs=58.0
Q ss_pred CeEEEEccChh-hHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++.|||.|.+ |..++..|... |..|+++++.. .++.+.+.++|+||.+++.+.. +.
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I~-- 218 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----LT-- 218 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----BC--
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----cC--
Confidence 68999999985 99999999998 88999997653 4778888999999999976542 22
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
...++++.+|||++.
T Consensus 219 ----~~~vk~GavVIDVgi 233 (281)
T 2c2x_A 219 ----ADMVRPGAAVIDVGV 233 (281)
T ss_dssp ----GGGSCTTCEEEECCE
T ss_pred ----HHHcCCCcEEEEccC
Confidence 123568999999884
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00032 Score=63.12 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=50.8
Q ss_pred cccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 16 AHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
..+++|+..++.+.+...... . ...+++.|+| +|.+|.+++..|++.|.+|++++|++++.+.+.
T Consensus 95 ~~G~nTd~~g~~~~l~~~~~~----~-----l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~ 160 (287)
T 1lu9_A 95 SNGSNTTAAAGVALVVKAAGG----S-----VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 160 (287)
T ss_dssp STTHHHHHHHHHHHHHHHTTS----C-----CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCcCCchHHHHHHHHHHhhcc----C-----CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 478999999988887643100 0 1125799999 999999999999999999999999987766554
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00028 Score=65.33 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCC-----C-eEEEEe-C-Cccc-chh----HHh-cCCcccC-CHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAG-----Y-TVTVFN-R-TLSK-AQP----LLD-IGAHLAD-SPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g-----~-~V~~~d-r-~~~~-~~~----~~~-~g~~~~~-~~~~~~~~~DiIi~~ 112 (351)
||||+|+| .|.+|..+.+.|.+.+ + +++.+. + +..+ +.. +.. ..+...+ +.+ ...++|+||+|
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~-~~~~~DvVf~a 87 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAA-VLGGHDAVFLA 87 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHH-HHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHH-HhcCCCEEEEC
Confidence 57999999 8999999999999877 3 666554 2 2222 221 111 1122221 333 34589999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCC
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~ 147 (351)
+|.. ...+.+. .+ ..|..+||+|+-.
T Consensus 88 lg~~-~s~~~~~----~~----~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 88 LPHG-HSAVLAQ----QL----SPETLIIDCGADF 113 (352)
T ss_dssp CTTS-CCHHHHH----HS----CTTSEEEECSSTT
T ss_pred CCCc-chHHHHH----HH----hCCCEEEEECCCc
Confidence 9554 3444554 33 3578899998753
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00077 Score=62.67 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=55.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh-----cC-----CcccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD-----IG-----AHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~-----~g-----~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
+||+|+| .|.+|..+.+.|.+... +++.+....+.-+.+.. .+ +... + ++...++|+||+|+|...
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGGCSEEEECCCTTT
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcCCCEEEEcCCchh
Confidence 6999999 89999999999987654 66655433222222221 11 1121 2 344467999999996655
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..+ ... . + ..|..+||++.-
T Consensus 95 s~~-~a~----~---~-~aG~~VId~sa~ 114 (359)
T 1xyg_A 95 TQE-IIK----E---L-PTALKIVDLSAD 114 (359)
T ss_dssp HHH-HHH----T---S-CTTCEEEECSST
T ss_pred HHH-HHH----H---H-hCCCEEEECCcc
Confidence 544 333 2 2 467789999874
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00035 Score=64.88 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=55.8
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCC-CeEEEEeCCcc-cchhHHh--------------cCCccc-CCHHHhhc-CCCEE
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAG-YTVTVFNRTLS-KAQPLLD--------------IGAHLA-DSPHSLAS-QSDVV 109 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g-~~V~~~dr~~~-~~~~~~~--------------~g~~~~-~~~~~~~~-~~DiI 109 (351)
|+||+|+| .|.+|..+.+.|.+.+ ++|+.+.+++. .-+.+.+ ..+... .++++..+ ++|+|
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 87 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIV 87 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEE
Confidence 47999999 8999999999998754 47766643321 1111211 111111 24555556 89999
Q ss_pred EEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 110 i~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
|+|+| .....+... .+ +..|..|||++..
T Consensus 88 ~~atp-~~~~~~~a~----~~---~~aG~~VId~s~~ 116 (354)
T 1ys4_A 88 FSALP-SDLAKKFEP----EF---AKEGKLIFSNASA 116 (354)
T ss_dssp EECCC-HHHHHHHHH----HH---HHTTCEEEECCST
T ss_pred EECCC-chHHHHHHH----HH---HHCCCEEEECCch
Confidence 99994 444444444 33 2367779998864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00041 Score=59.40 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=50.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----cCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+...++.. .+...+.+..+|+||.|...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 68999987 99999999999999999999999987766554333322 11111566789999998844
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00059 Score=60.77 Aligned_cols=73 Identities=27% Similarity=0.360 Sum_probs=58.4
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||.|. +|..++..|...|..|+++++.. .++++.+.++|+||.+++.+.. +.
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~----I~---- 219 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL----VK---- 219 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC----BC----
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC----CC----
Confidence 6899999876 89999999999999999997632 3677888999999999975432 22
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..+++++.+|||+...
T Consensus 220 --~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 220 --GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp --GGGSCTTCEEEECCSC
T ss_pred --HHHcCCCeEEEEeccc
Confidence 1345789999998853
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=62.30 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=50.1
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeE-EEEeCCcccchhHHhc-CCcccCCHHHhhc-CCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTV-TVFNRTLSKAQPLLDI-GAHLADSPHSLAS-QSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V-~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||+|||+|.+|..+++.+.. .|+++ .++|.++++....... .+...++++++++ +.|+|++|+|. ....++..
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps-~~~~ei~~ 158 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR-EAAQKAAD 158 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH-HHHHHHHH
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc-hhHHHHHH
Confidence 689999999999999996322 26764 4779998876543321 2333567777765 58999999954 33334443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=70.45 Aligned_cols=64 Identities=8% Similarity=0.170 Sum_probs=45.9
Q ss_pred CeEEEEccChhhHH--HHHHHHH----C--CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRS--MCAHLLN----A--GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~--ia~~L~~----~--g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|+.|.. +...++. . +.+|+++|+++++++.... .| +..+++..++++++|+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 79999999998754 3333432 1 2479999999887644211 12 34567889999999999
Q ss_pred EEec
Q 018694 110 FSIV 113 (351)
Q Consensus 110 i~~v 113 (351)
|++.
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9986
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00034 Score=62.55 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=46.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh---cCCcccCCHHHhhcC-CCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD---IGAHLADSPHSLASQ-SDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~---~g~~~~~~~~~~~~~-~DiIi~~v 113 (351)
||||.|.|+|.+|..++..|.+.|++|++.+|+++....-.. ..+.-..+..++++. +|+||.+.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 579999999999999999999999999999998765321000 011111223344444 99999887
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00081 Score=62.00 Aligned_cols=94 Identities=9% Similarity=0.110 Sum_probs=63.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chh----HHhc------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQP----LLDI------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~----~~~~------g~~~~~~~~~~~~~~Di 108 (351)
.-||+|+|+ |.+|..++..|+.... ++.++|+++.. ++. +..- .+...++..+.++++|+
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~adv 103 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAI 103 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCE
Confidence 359999996 9999999999987643 79999997642 121 2211 23456678888999999
Q ss_pred EEEecCCh---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 109 VFSIVGYP---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 109 Ii~~vp~~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
||++-..+ ..++++.. .+..+..++..|+-.+|-
T Consensus 104 Vvi~aG~prkpGmtR~DLl~~Na~I~~~~~~----~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 104 AIMCGAFPRKAGMERKDLLEMNARIFKEQGE----AIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHHSCTTCEEEECSSS
T ss_pred EEECCCCCCCCCCCHHHHHHHhHHHHHHHHH----HHHhhccCceEEEEeCCC
Confidence 99987322 12344444 455555577777767763
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0003 Score=60.28 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=46.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcc-cCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHL-ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~-~~~~~~~~~~~DiIi~~vp 114 (351)
|||.|.| +|.+|..+++.|.+.|++|++.+|++++.+.+..- .+.- ..+..++++++|+||.|..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 6899997 79999999999999999999999998765443100 1111 1123344566788877773
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00027 Score=65.17 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=53.5
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCC---CeEEEEe-C-CcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAG---YTVTVFN-R-TLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g---~~V~~~d-r-~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
|+||+|+| .|.+|..+.+.|.+.+ ++++.+. + +..+.-.+....+.+.+...+...++|+||+|+|. ....+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~-~~s~~~ 81 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGG-ELSAKW 81 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCH-HHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCc-hHHHHH
Confidence 68999999 9999999999998874 3555554 2 22121111111122211111233579999999944 434444
Q ss_pred hhCCCCCcccCCCCCcEEEecCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. .. +..|..+||.+.-
T Consensus 82 a~----~~---~~~G~~vId~s~~ 98 (336)
T 2r00_A 82 AP----IA---AEAGVVVIDNTSH 98 (336)
T ss_dssp HH----HH---HHTTCEEEECSST
T ss_pred HH----HH---HHcCCEEEEcCCc
Confidence 44 22 3467789998854
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00045 Score=63.77 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC---eEEEE-eCC-cccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY---TVTVF-NRT-LSKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~---~V~~~-dr~-~~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
+|||+|+| .|.+|..+.+.|.+++| +++.+ ++. ..+.-.+....+...+ +.++ ...+|+||+|+| .....+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~~~DvV~~a~g-~~~s~~ 83 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FSSVGLAFFAAA-AEVSRA 83 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GGGCSEEEECSC-HHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hcCCCEEEEcCC-cHHHHH
Confidence 47999999 79999999999987766 44444 432 2221111111111111 2222 467999999994 444444
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
... .. +..|..+|+++.-
T Consensus 84 ~a~----~~---~~aG~kvId~Sa~ 101 (340)
T 2hjs_A 84 HAE----RA---RAAGCSVIDLSGA 101 (340)
T ss_dssp HHH----HH---HHTTCEEEETTCT
T ss_pred HHH----HH---HHCCCEEEEeCCC
Confidence 444 22 2356778888754
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00036 Score=64.24 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=55.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc----CCH---HHh-hcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA----DSP---HSL-ASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~----~~~---~~~-~~~~DiIi~~vp~~~~~~~ 121 (351)
++|.|+|+|.+|..+++.|.+.|+ |+++|+++++.+ +.+.+.... ++. .++ ++++|.++++++++.....
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~ 193 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH 193 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHHH
Confidence 589999999999999999999999 999999999988 776664331 122 222 4689999999965544443
Q ss_pred Hhh
Q 018694 122 VLL 124 (351)
Q Consensus 122 v~~ 124 (351)
++.
T Consensus 194 ~~~ 196 (336)
T 1lnq_A 194 CIL 196 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00099 Score=62.27 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=70.3
Q ss_pred CeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcccchhHHhcC------------------CcccC----CHHHhhcCC
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSKAQPLLDIG------------------AHLAD----SPHSLASQS 106 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~~~~~~~~g------------------~~~~~----~~~~~~~~~ 106 (351)
||+..+|+|++|+. ++..|.++|++|++.|+++..++.++++| +.... ..-+.+.++
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a 80 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV 80 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence 79999999999966 66677889999999999998888887763 11111 123456789
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCC--------CCCcEEEecCCCChhHHHHHHHH
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGL--------RPGGIIVDMTTSEPSLASELSAA 157 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l--------~~~~~ii~~s~~~~~~~~~l~~~ 157 (351)
|+|..++ .+..++++.. .+...+ .++-.|++|-|. +.....+.+.
T Consensus 81 dlitT~v-G~~~l~~i~~----~l~~~L~~R~~~~~~~pltilsCeN~-~~ng~~lk~~ 133 (382)
T 3h2z_A 81 DLVTTAV-GPVVLERIAP----AIAKGLVKRKEQGNESPLNIIACENM-VRGTTQLKGH 133 (382)
T ss_dssp SEEEECC-CHHHHHHTHH----HHHHHHHHHHHHTCCSCEEEEECCSS-TTHHHHHHHH
T ss_pred CEEEECC-CcccHHHHHH----HHHHHHHHHHHcCCCCCcEEEECCCc-cchHHHHHHH
Confidence 9999999 6666555554 333222 244568888886 4444555443
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00087 Score=61.67 Aligned_cols=89 Identities=16% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEEEE-eC--CcccchhHHhc----C-------------------Ccc--cCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVTVF-NR--TLSKAQPLLDI----G-------------------AHL--ADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~-dr--~~~~~~~~~~~----g-------------------~~~--~~~~ 99 (351)
|+||||+|+|.+|..+++.|.+. +.+|+.+ |+ +++....+.+. | +.+ ..++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998764 4676644 53 44433322221 0 011 1255
Q ss_pred HHhh---cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 100 HSLA---SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 100 ~~~~---~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+++. .++|+||.|+|.....+.+-. ++..|..+|+++.
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~--------~l~aGak~V~iSa 123 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTMEKAGA--------HLQGGAKRVIISA 123 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGG--------GGGGTCSEEEESS
T ss_pred HHCccccCCCCEEEECCCchhhHHHHHH--------HHhCCCeEEEecc
Confidence 5542 478999999976655443222 2334544555554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00075 Score=64.43 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=58.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-C---eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-Y---TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~---~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+||.|||+|.||+.++..+++.+ + +|++.|.+....+.....| ..++-..+ ....+++++.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g-------------~~~~~~~V-dadnv~~~l~ 78 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYG-------------VSFKLQQI-TPQNYLEVIG 78 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHT-------------CEEEECCC-CTTTHHHHTG
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcC-------------CceeEEec-cchhHHHHHH
Confidence 478999999999999999998754 4 6898887754422211112 23333444 4455554444
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv 170 (351)
.+. .++.++|+++- +-....+.+.+.+.|++|+|..+
T Consensus 79 ----aLl---~~~DvVIN~s~--~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 79 ----STL---EENDFLIDVSI--GISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp ----GGC---CTTCEEEECCS--SSCHHHHHHHHHHHTCEEEESSC
T ss_pred ----HHh---cCCCEEEECCc--cccCHHHHHHHHHcCCCEEECCC
Confidence 332 23466666442 22334555555556777777643
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00044 Score=64.29 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=54.5
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCe---EEEEe-C-CcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYT---VTVFN-R-TLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~---V~~~d-r-~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
++||+||| .|..|..+.+.|.+.+|+ +.... + +..+.-.+......+.....+...++|+||+|+ +.....+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~-~~~~s~~~ 80 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSA-GSSTSAKY 80 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECS-CHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECC-ChHhHHHH
Confidence 57999999 699999999999987663 34333 2 221111111111222111123357899999999 44444545
Q ss_pred hhCCCCCcccCCCCCcEEEecCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. .+ +..|..+||++.-
T Consensus 81 a~----~~---~~~G~~vIDlSa~ 97 (366)
T 3pwk_A 81 AP----YA---VKAGVVVVDNTSY 97 (366)
T ss_dssp HH----HH---HHTTCEEEECSST
T ss_pred HH----HH---HHCCCEEEEcCCc
Confidence 54 33 3467889999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0022 Score=61.53 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc----cchhHHhcCCcccC--CHHHhhcC-CCEEEEec--CCh-hH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS----KAQPLLDIGAHLAD--SPHSLASQ-SDVVFSIV--GYP-SD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~----~~~~~~~~g~~~~~--~~~~~~~~-~DiIi~~v--p~~-~~ 118 (351)
.+||.|||.|..|.+.|+.|.+.|++|+++|+++. ..+.+.+.|+.+.. ..++...+ +|+||+.. |+. ..
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChh
Confidence 36899999999999999999999999999998643 23556666776532 33445566 89998864 221 22
Q ss_pred HHHHhhCCCCCcc------c-CCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 119 VRHVLLHPSSGAL------S-GLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 119 ~~~v~~~~~~~i~------~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+........ .+. . ......+-|.-++|...++.-+...+...+.
T Consensus 89 ~~~a~~~gi-~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 139 (451)
T 3lk7_A 89 VKKALEKQI-PVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ 139 (451)
T ss_dssp HHHHHHTTC-CEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCC-cEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 222222100 111 1 1122345666667766666666666665554
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00069 Score=61.25 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=47.2
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----cCCcccCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----IGAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----~g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
|||||.|.| +|.+|..++..|.+.|++|++.+|++...+ +.. ..+. ..+..++++++|+||.|..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 368999998 699999999999999999999999854433 221 0233 3445667788999998873
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00067 Score=57.05 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=44.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~v 113 (351)
|||.|.|+ |.+|..+++.|.+.|++|++++|++++.+.....++.. .++..++++.+|+||.+.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence 78999987 99999999999999999999999987654321112211 112234455667766666
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0014 Score=62.08 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCeEEEEccChh-hHHHHHHHHH--C---CCeEEEEeCCcccchhHHhc-------C--CcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVM-GRSMCAHLLN--A---GYTVTVFNRTLSKAQPLLDI-------G--AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~m-G~~ia~~L~~--~---g~~V~~~dr~~~~~~~~~~~-------g--~~~~~~~~~~~~~~DiIi~~v 113 (351)
+|||+|||+|.. +..+...|.. . +.+|+++|+++++++..... . +..+++..++++++|+||++.
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence 489999999985 1122233444 2 45899999998875432111 1 223457778889999999999
Q ss_pred CC
Q 018694 114 GY 115 (351)
Q Consensus 114 p~ 115 (351)
..
T Consensus 82 gv 83 (417)
T 1up7_A 82 RP 83 (417)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00068 Score=62.32 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=48.3
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC--e-----EEEEeCCcc--cch----hHHhc------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY--T-----VTVFNRTLS--KAQ----PLLDI------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~--~-----V~~~dr~~~--~~~----~~~~~------g~~~~~~~~~~~~~~Di 108 (351)
.+||+|+| +|.+|..++..|+..|. + +.++|+++. +++ .+.+- ++...++..+.++++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 47999999 79999999999998776 5 999999742 222 22221 13345566778899999
Q ss_pred EEEec
Q 018694 109 VFSIV 113 (351)
Q Consensus 109 Ii~~v 113 (351)
||++.
T Consensus 83 VvitA 87 (333)
T 5mdh_A 83 AILVG 87 (333)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99986
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=60.80 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=49.5
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
.+|||.|.| +|.+|..+++.|.+.|++|++++|++++.+.+...++.. ..+..++++.+|+||.|..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 357999998 599999999999999999999999987765554333321 1123456678999998874
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=60.11 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=50.0
Q ss_pred CeEEEEccChhhHHHHHHH--HHCCCeE-EEEeCCcc-cchh-HHhcCCcc--cCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHL--LNAGYTV-TVFNRTLS-KAQP-LLDIGAHL--ADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L--~~~g~~V-~~~dr~~~-~~~~-~~~~g~~~--~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
.+|+|+|+|++|.+++..+ ...|+++ .++|.+++ +... .. .|+.+ .+++++.++ +.|.+++|+|. ....
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs-~~aq 162 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPS-TEAQ 162 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCG-GGHH
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCc-hhHH
Confidence 6899999999999999984 3456764 47799988 6644 22 35544 345666665 58999999944 4444
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
++.+
T Consensus 163 ~v~d 166 (212)
T 3keo_A 163 EVAD 166 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=60.52 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=53.9
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCC-CeEEEEe-CCcccchhHHh--------------cCCcccC-CHHHhhcCCCEE
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAG-YTVTVFN-RTLSKAQPLLD--------------IGAHLAD-SPHSLASQSDVV 109 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g-~~V~~~d-r~~~~~~~~~~--------------~g~~~~~-~~~~~~~~~DiI 109 (351)
.|+||+|+| +|.+|..+.+.|.+.. .+++.+. .+...-+.+.+ ..+.+.+ ++++ ..++|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvV 81 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVV 81 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEE
Confidence 357999999 7999999999987654 3666553 22122122211 1122222 3344 3689999
Q ss_pred EEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 110 i~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
|+|+|... ..+... .. +..|..+||.+..
T Consensus 82 f~atp~~~-s~~~a~----~~---~~aG~~VId~s~~ 110 (350)
T 2ep5_A 82 LSALPNEL-AESIEL----EL---VKNGKIVVSNASP 110 (350)
T ss_dssp EECCCHHH-HHHHHH----HH---HHTTCEEEECSST
T ss_pred EECCChHH-HHHHHH----HH---HHCCCEEEECCcc
Confidence 99995443 343443 22 2457779998853
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0011 Score=58.44 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999998 799998874
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0035 Score=57.83 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=57.4
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh------cCCcccC-CHHHhhcCCCEEEEecCChhH
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD------IGAHLAD-SPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~------~g~~~~~-~~~~~~~~~DiIi~~vp~~~~ 118 (351)
.|.||+||| .|..|..+.+.|.+... ++..+.-....-+.+.+ ..+.+.. +.++...++|++|+|+ +...
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~al-p~~~ 90 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTAL-PAGA 90 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECC-STTH
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECC-CcHH
Confidence 468999996 59999999999998654 55555322111112211 2233322 4455557899999999 4455
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..+... .+ .+..|||+|+-
T Consensus 91 s~~~~~----~~-----~g~~VIDlSsd 109 (351)
T 1vkn_A 91 SYDLVR----EL-----KGVKIIDLGAD 109 (351)
T ss_dssp HHHHHT----TC-----CSCEEEESSST
T ss_pred HHHHHH----Hh-----CCCEEEECChh
Confidence 555665 43 68899999974
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.024 Score=53.27 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=70.4
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeEE-EEeC----------CcccchhHHhc-C-------CcccCCHHHhh-cCCCE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNR----------TLSKAQPLLDI-G-------AHLADSPHSLA-SQSDV 108 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~Di 108 (351)
++|+|.|.|++|...++.|.+ .|..|+ +.|. +.+.+..+.+. | .... +.+++. .+||+
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~~~DI 288 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI 288 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTCSCSE
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcCCCcE
Confidence 789999999999999999998 999877 6666 34444444443 2 1222 344543 47999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++-|........+-.. ++ +-++|+...|. |.+ .+-.+.+.++|+.|+.
T Consensus 289 liP~A~~n~i~~~~a~----~l-----~ak~V~EgAN~-p~t-~~a~~~l~~~Gi~~~P 336 (415)
T 2tmg_A 289 LVPAALEGAIHAGNAE----RI-----KAKAVVEGANG-PTT-PEADEILSRRGILVVP 336 (415)
T ss_dssp EEECSSTTSBCHHHHT----TC-----CCSEEECCSSS-CBC-HHHHHHHHHTTCEEEC
T ss_pred EEecCCcCccCcccHH----Hc-----CCeEEEeCCCc-ccC-HHHHHHHHHCCCEEEC
Confidence 9999854443344443 33 56788888887 333 3445566677887774
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0047 Score=53.03 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=63.7
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
-||.+|+|+ |.||..+.+...+.|++++ .+|+..+ +.+.++|++|=.+ .|..+.+.+.
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-----------------~~l~~~DVvIDFT-~P~a~~~~~~-- 71 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTVD-- 71 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHHH--
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-----------------ccccCCCEEEECC-CHHHHHHHHH--
Confidence 389999998 9999999887777888865 4566431 1113689999777 6666666554
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.. +..+..+|..+|+-.....+..+.+.+ .+.++-+|++.
T Consensus 72 --~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~-~~~vv~apNfS 111 (228)
T 1vm6_A 72 --LC---KKYRAGLVLGTTALKEEHLQMLRELSK-EVPVVQAYNFS 111 (228)
T ss_dssp --HH---HHHTCEEEECCCSCCHHHHHHHHHHTT-TSEEEECSCCC
T ss_pred --HH---HHcCCCEEEeCCCCCHHHHHHHHHHHh-hCCEEEecccc
Confidence 22 235666777777654433233333333 37777778774
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00099 Score=59.49 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=50.8
Q ss_pred CeEEEEc-cChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||.|.| +|.+|..+++.|.+. |++|.+.+|++++...+...++.. ..+..++++.+|+||.|.+.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 6899998 599999999999987 999999999988776655444332 12334566788999988743
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=60.91 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=67.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc-------ccchhHHhc------CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL-------SKAQPLLDI------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~-------~~~~~~~~~------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
..||.|+|+|..|.++++.+...|. +|+++|++- +++..++.. ......+++|++..+|++|=+..
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa 267 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA 267 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCC
Confidence 3699999999999999999999999 899999973 223332221 11124578999999998877764
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~ 148 (351)
+.-..+++++ .+ .++.+|+.++|-.|
T Consensus 268 pgl~T~EmVk----~M----a~~pIIfalsNPt~ 293 (398)
T 2a9f_A 268 PGVLKAEWIS----KM----AARPVIFAMANPIP 293 (398)
T ss_dssp TTCCCHHHHH----TS----CSSCEEEECCSSSC
T ss_pred CCCCCHHHHH----hh----CCCCEEEECCCCCc
Confidence 4445566666 44 48999999999665
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.016 Score=54.85 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=68.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeC----------CcccchhHHhc-C-------CcccCCHHHhh-cCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNR----------TLSKAQPLLDI-G-------AHLADSPHSLA-SQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~DiI 109 (351)
+||+|.|.|++|...++.|.+.|..|+ +.|+ +.+.+..+.+. | .... +.+++. .+||++
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~~DIl 314 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFL 314 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCCCSEE
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCCCcEE
Confidence 789999999999999999999999877 6676 33344444433 2 1222 344543 479999
Q ss_pred EEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 110 i~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
+-|........+-.. + + +-++|+...|. |.+ .+-.+.+.++|+.|+.
T Consensus 315 vPcA~~n~i~~~na~----~----l-~ak~VvEgAN~-p~t-~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 315 VPAALEKQITEQNAW----R----I-RARIVAEGANG-PTT-PAADDILLEKGVLVVP 361 (440)
T ss_dssp EECSSSSCBCTTTGG----G----C-CCSEEECCSSS-CBC-HHHHHHHHHHTCEEEC
T ss_pred EecCCcCccchhhHH----H----c-CCcEEEecCcc-ccC-HHHHHHHHHCCCEEEC
Confidence 999843322222222 2 2 56789988887 433 3445566667877774
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0013 Score=59.53 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=48.0
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcc-cchh---HHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLS-KAQP---LLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~---~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
|+||.|.|+ |.+|..++..|.+.|++|++.+|+++ +.+. +...++.. ..++.++++.+|+||.+.+
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 458999985 99999999999999999999999875 3222 22334332 1133456678999998884
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0012 Score=64.46 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=61.6
Q ss_pred ccccccccchhhHHHHHHHHhhhccccCC----CCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 13 SRTAHSYSLSVSSLVTLLLRRRSMATVAS----TDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
.+.+.+++|+..++...+... ....... .........++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+
T Consensus 325 ~gk~~g~nTD~~G~~~~l~~~-~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~l 403 (523)
T 2o7s_A 325 DGKLLGYNTDCIGSISAIEDG-LRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 403 (523)
T ss_dssp TCCEEEECCHHHHHHHHHHHH-C-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHh-hhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 678999999999988766433 1110000 00001112468999999999999999999999999999998887776
Q ss_pred Hhc-CCc--ccCCHHH-hhcCCCEEEEecC
Q 018694 89 LDI-GAH--LADSPHS-LASQSDVVFSIVG 114 (351)
Q Consensus 89 ~~~-g~~--~~~~~~~-~~~~~DiIi~~vp 114 (351)
.+. +.. ...+.++ .....|++|.+++
T Consensus 404 a~~~~~~~~~~~dl~~~~~~~~DilVN~ag 433 (523)
T 2o7s_A 404 AEAIGGKALSLTDLDNYHPEDGMVLANTTS 433 (523)
T ss_dssp HHHTTC-CEETTTTTTC--CCSEEEEECSS
T ss_pred HHHcCCceeeHHHhhhccccCceEEEECCC
Confidence 554 211 1112222 1123677777774
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=61.28 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=53.6
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC-eEEEE-eCCcccchhHHh--------------cCCcccCCHHHhhcCCCEEEE
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY-TVTVF-NRTLSKAQPLLD--------------IGAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~-dr~~~~~~~~~~--------------~g~~~~~~~~~~~~~~DiIi~ 111 (351)
++||+||| .|..|..+.+.|.+..+ ++..+ .++.. -+.+.+ ....+.....+.+.++|+||+
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~sa-Gk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~ 85 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSV-GKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFS 85 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTT-TSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhc-CCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEE
Confidence 46899999 69999999998876443 55544 33321 111211 122222212233478999999
Q ss_pred ecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 112 ~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
|+|... ..+... .+ +..|..+||+|+-
T Consensus 86 a~p~~~-s~~~a~----~~---~~~G~~vIDlSa~ 112 (359)
T 4dpl_A 86 PLPQGA-AGPVEE----QF---AKEGFPVISNSPD 112 (359)
T ss_dssp CCCTTT-HHHHHH----HH---HHTTCEEEECSST
T ss_pred CCChHH-HHHHHH----HH---HHCCCEEEEcCCC
Confidence 996544 334444 22 3468899999864
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=61.28 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC-eEEEE-eCCcccchhHHh--------------cCCcccCCHHHhhcCCCEEEE
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY-TVTVF-NRTLSKAQPLLD--------------IGAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~-dr~~~~~~~~~~--------------~g~~~~~~~~~~~~~~DiIi~ 111 (351)
++||+||| .|..|..+.+.|.+..+ ++..+ .++.. -+.+.+ ....+.....+.+.++|+||+
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~sa-Gk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~ 85 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSV-GKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFS 85 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTT-TSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhc-CCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEE
Confidence 46899999 69999999998876443 55544 33321 111211 122222212233478999999
Q ss_pred ecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 112 ~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
|+|... ..+... .+ +..|..+||+|+-
T Consensus 86 a~p~~~-s~~~a~----~~---~~~G~~vIDlSa~ 112 (359)
T 4dpk_A 86 PLPQGA-AGPVEE----QF---AKEGFPVISNSPD 112 (359)
T ss_dssp CCCTTT-HHHHHH----HH---HHTTCEEEECSST
T ss_pred CCChHH-HHHHHH----HH---HHCCCEEEEcCCC
Confidence 996544 334444 22 3468899999864
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=59.95 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=48.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCc------ccchh---HHhcCCcc-------cCCHHHhhcCCCEEE
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTL------SKAQP---LLDIGAHL-------ADSPHSLASQSDVVF 110 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~------~~~~~---~~~~g~~~-------~~~~~~~~~~~DiIi 110 (351)
+||+|.|.|+ |.+|..+++.|.+.|++|++.+|++ ++.+. +...++.. ..++.++++.+|+||
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4688999985 9999999999999999999999986 22222 22334322 113445677899999
Q ss_pred EecC
Q 018694 111 SIVG 114 (351)
Q Consensus 111 ~~vp 114 (351)
.|..
T Consensus 83 ~~a~ 86 (321)
T 3c1o_A 83 SALP 86 (321)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9884
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0018 Score=59.74 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHC-CCeEEEEe
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNA-GYTVTVFN 79 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~d 79 (351)
..|+||+|+|+|.+|..+.+.|.+. .++|+.++
T Consensus 15 ~~~ikVgI~G~G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CcceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence 3467999999999999999999876 56766554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0019 Score=58.14 Aligned_cols=118 Identities=14% Similarity=0.226 Sum_probs=65.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-------CCcccCCHHHhh--cCCCEEEEecCCh---
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-------GAHLADSPHSLA--SQSDVVFSIVGYP--- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-------g~~~~~~~~~~~--~~~DiIi~~vp~~--- 116 (351)
.||.|||+|.+|+.++..|+.+|. +++++|.+.=....+..+ |........+.+ -++++-|.+.+..
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~ 116 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITT 116 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTS
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCc
Confidence 689999999999999999999998 799999874222122111 111111111211 1456666665321
Q ss_pred -hHHHHHhhCCCCCcc--cC--CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 -SDVRHVLLHPSSGAL--SG--LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~--~~--l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
..+++.+. .+. .. ...-++||+++-. ..+-..+.+.....++.++.+.+.+
T Consensus 117 ~~~~~~~~~----~~~~~~l~~~~~~DlVid~~Dn-~~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 117 VENFQHFMD----RISNGGLEEGKPVDLVLSCVDN-FEARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp HHHHHHHHH----HHHHBSSSTTBCCSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred HHHHHHHhh----hhcccccccCCCCCEEEECCcc-hhhhhHHHHHHHHhCCCEEEeeeec
Confidence 23333332 110 00 1345688887754 4443455666656677888765543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0019 Score=60.20 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=50.3
Q ss_pred CCCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 45 VCPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 45 ~~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
++..||||.|.|+ |.+|..++..|.+.|++|++.+|++.........++.. ..+..++++.+|+||.|..
T Consensus 25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 102 (379)
T 2c5a_A 25 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 102 (379)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred ccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence 4446789999987 99999999999999999999999876543322222221 1123455678899888863
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0014 Score=56.98 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEec
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~v 113 (351)
++|+|.|.| .|.+|..+++.|.+. |++|++.+|++++.+.+ ..++.. ..+..++++.+|+||.+.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 77 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILT 77 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence 467899997 599999999999999 89999999997665433 112111 112345566788888877
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=61.15 Aligned_cols=66 Identities=15% Similarity=0.334 Sum_probs=49.5
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-CCcc--------cCCHHHhhcCCCEEEEec
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GAHL--------ADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~~~--------~~~~~~~~~~~DiIi~~v 113 (351)
+||||.|.| +|.+|..++..|.+. |++|++.+|++++...+... ++.. ..+..++++++|+||-|.
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 468999998 699999999999998 99999999998776655432 2211 112344567899999876
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0016 Score=58.54 Aligned_cols=66 Identities=32% Similarity=0.425 Sum_probs=47.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc------ch---hHHhcCCccc-------CCHHHhhcCCCEEEE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK------AQ---PLLDIGAHLA-------DSPHSLASQSDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~------~~---~~~~~g~~~~-------~~~~~~~~~~DiIi~ 111 (351)
||||.|+|+ |.+|..+++.|.+.|++|++.+|++.. .+ .+...|+... .++.++++.+|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 578999986 999999999999999999999998432 21 1222343321 123455678999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+.+
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 884
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0026 Score=54.83 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=52.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-CcccC--CHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLAD--SPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.++|.|||.|.+|..-++.|.+.|.+|++++++.. .++.+.+.+ +.... -.++.+..+|+||.|+ ....+...+.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT-~d~~~N~~I~ 109 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT-NDQAVNKFVK 109 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC-CCTHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC-CCHHHHHHHH
Confidence 37899999999999999999999999999987643 244444443 32211 1234467899999998 4444443333
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0036 Score=58.20 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=59.9
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC-----eEEEEeCCccc----chh----HHhc------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY-----TVTVFNRTLSK----AQP----LLDI------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~-----~V~~~dr~~~~----~~~----~~~~------g~~~~~~~~~~~~~~Di 108 (351)
++||+|+| +|.+|.+++..|+..+. ++.+++.+.+. ++. +..- .+...++..+.++++|+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 47999999 79999999999998765 37776654333 211 1111 12345566778899999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. .+..+..++.+++..+|
T Consensus 112 VVitag~prkpG~tR~DLl~~N~~I~k~i~~----~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 112 ALLIGAKPRGPGMERAALLDINGQIFADQGK----ALNAVASKNVKVLVVGN 159 (375)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHHSCTTCEEEECSS
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhcCCCeEEEEecC
Confidence 999763221 1333433 44444456777777776
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.043 Score=51.62 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=71.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeC----------CcccchhHHhc-C-Ccc-cCCHHHh-hcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNR----------TLSKAQPLLDI-G-AHL-ADSPHSL-ASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr----------~~~~~~~~~~~-g-~~~-~~~~~~~-~~~~DiIi~~vp 114 (351)
++|.|.|.|++|...++.|.+.|..|+ +.|+ +.+.+..+.+. + +.- .-+.+++ -.+||+.+-|..
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVliP~A~ 298 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLAAR 298 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEEeccc
Confidence 689999999999999999999999887 7787 44555555443 2 110 1122333 248999999984
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
......+... .+ +-++|+...|. |.+ .+-.+.+.++|+.|+..
T Consensus 299 ~n~i~~~~A~----~l-----~ak~V~EgAN~-p~t-~~A~~~L~~~Gi~~~PD 341 (419)
T 3aoe_E 299 EGALDGDRAR----QV-----QAQAVVEVANF-GLN-PEAEAYLLGKGALVVPD 341 (419)
T ss_dssp TTCBCHHHHT----TC-----CCSEEEECSTT-CBC-HHHHHHHHHHTCEEECH
T ss_pred ccccccchHh----hC-----CceEEEECCCC-cCC-HHHHHHHHHCCCEEECH
Confidence 4333333333 33 45689998887 433 34556667778888743
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.005 Score=56.03 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=47.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeC--Ccccchh----HHhc------CCcccC---CHHHhhcCCCEEEE
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNR--TLSKAQP----LLDI------GAHLAD---SPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr--~~~~~~~----~~~~------g~~~~~---~~~~~~~~~DiIi~ 111 (351)
|||+|+|+ |.+|..++..|...|+ ++.++|+ ++++.+. +.+. ...+.. +..++++++|+||+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 69999999 9999999999998875 7999999 6544322 1111 112222 24677899999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+..
T Consensus 81 ~Ag 83 (313)
T 1hye_A 81 TSG 83 (313)
T ss_dssp CCS
T ss_pred CCC
Confidence 974
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0014 Score=58.94 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=49.0
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCc-------ccchhH---HhcCCcc-------cCCHHHhhcCCCEEE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTL-------SKAQPL---LDIGAHL-------ADSPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~-------~~~~~~---~~~g~~~-------~~~~~~~~~~~DiIi 110 (351)
||||.|.|+ |.+|..+++.|.+.|++|++.+|++ ++.+.+ ...++.. ..+..++++.+|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999986 9999999999999999999999986 333322 2334332 112345667899999
Q ss_pred EecCC
Q 018694 111 SIVGY 115 (351)
Q Consensus 111 ~~vp~ 115 (351)
.+.+.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 98843
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=54.85 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=63.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCc---------------ccchhHHhc-C-------CcccCCHHHh-hc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTL---------------SKAQPLLDI-G-------AHLADSPHSL-AS 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~---------------~~~~~~~~~-g-------~~~~~~~~~~-~~ 104 (351)
+||+|.|.|++|...++.|.+.|..|+ +.|.++ +.+..+.+. | .... +.++. -.
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence 689999999999999999999999887 667773 223333322 2 1111 12232 23
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
+||+++-|........+-.. ++ +.++|+..+|+ |.+ .+..+.+.++|+.|++
T Consensus 292 ~~DIliP~A~~n~i~~~~A~----~l-----~ak~VvEgAN~-P~t-~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 292 EYDIIVPAALENVITGERAK----TI-----NAKLVCEAANG-PTT-PEGDKVLTERGINLTP 343 (421)
T ss_dssp ---CEEECSCSSCSCHHHHT----TC-----CCSEEECCSSS-CSC-HHHHHHHHHHTCEEEC
T ss_pred CccEEEEcCCcCcCCcccHH----Hc-----CCeEEEeCCcc-ccC-HHHHHHHHHCCCEEEC
Confidence 79999998854444444444 33 56789988887 433 3445556667877763
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0017 Score=59.65 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=48.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCc----ccch---hHHhcCCcc-------cCCHHHhhc--CCCEEEE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTL----SKAQ---PLLDIGAHL-------ADSPHSLAS--QSDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~----~~~~---~~~~~g~~~-------~~~~~~~~~--~~DiIi~ 111 (351)
+|||.|.|+ |.+|..++..|.+.|++|++.+|++ ++.+ .+...++.. ..+..++++ .+|+||.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 478999987 9999999999999999999999986 2322 222334332 123445667 8999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+.+
T Consensus 90 ~a~ 92 (346)
T 3i6i_A 90 TVG 92 (346)
T ss_dssp CCC
T ss_pred CCc
Confidence 984
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.003 Score=54.68 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=45.2
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCC-------cccCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGA-------HLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~-------~~~~~~~~~~~~~DiIi~~vp 114 (351)
|+|.|.| +|.+|..+++.|.+.|+ +|++++|++++.+.....++ .-..+..++++.+|+||.|..
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag 93 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 93 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence 6899997 69999999999999999 99999999876543322111 111223344556677777663
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0022 Score=59.95 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=53.7
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC-eEE-EE-eC-Cccc-chhH-----------HhcCCcccC-CHHHhhcCCCEEE
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY-TVT-VF-NR-TLSK-AQPL-----------LDIGAHLAD-SPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~-~~-dr-~~~~-~~~~-----------~~~g~~~~~-~~~~~~~~~DiIi 110 (351)
++||+||| .|..|..+.+.|.+..+ ++. ++ ++ +..+ +... ......+.. +.++.+.++|+||
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dvvf 98 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVF 98 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEE
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCEEE
Confidence 46899999 59999999998877543 564 33 22 2211 1110 001122221 1221457899999
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+|+ +.....+... .+ ...+..+||+|+-
T Consensus 99 ~al-p~~~s~~~~~----~~---~~~G~~VIDlSa~ 126 (381)
T 3hsk_A 99 SGL-DADVAGDIEK----SF---VEAGLAVVSNAKN 126 (381)
T ss_dssp ECC-CHHHHHHHHH----HH---HHTTCEEEECCST
T ss_pred ECC-ChhHHHHHHH----HH---HhCCCEEEEcCCc
Confidence 999 5555555554 33 2468889998864
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=57.82 Aligned_cols=66 Identities=27% Similarity=0.364 Sum_probs=47.9
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcc-----cchhH---HhcCCccc-------CCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLS-----KAQPL---LDIGAHLA-------DSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~-----~~~~~---~~~g~~~~-------~~~~~~~~~~DiIi~~ 112 (351)
||||.|.|+ |.+|..++..|.+.|++|++.+|++. +.+.+ ...++... .+..++++.+|+||.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 578999985 99999999999999999999999842 32222 22343221 1334566789999988
Q ss_pred cC
Q 018694 113 VG 114 (351)
Q Consensus 113 vp 114 (351)
.+
T Consensus 84 a~ 85 (313)
T 1qyd_A 84 LA 85 (313)
T ss_dssp CC
T ss_pred Cc
Confidence 84
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=59.95 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.1
Q ss_pred CeEEEEccChhhHHHHHHHHHC-CCeEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA-GYTVTVF 78 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~ 78 (351)
+||||+|+|.+|..+.+.|.+. +++|+.+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI 33 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAV 33 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence 5999999999999999999875 4565544
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0032 Score=56.40 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=49.2
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCC-CeEEEEeCCcccc--hhHHhcCCcc----cC---CHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAG-YTVTVFNRTLSKA--QPLLDIGAHL----AD---SPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g-~~V~~~dr~~~~~--~~~~~~g~~~----~~---~~~~~~~~~DiIi~~vp 114 (351)
+|+|.|.|+ |.+|..+++.|.+.| ++|.+.+|++++. +.+...++.. .. +..++++.+|+||.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 478999987 999999999999988 9999999997653 2333334332 11 23456778999999874
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.003 Score=57.92 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=30.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 689999999999999999999998 799999875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0026 Score=58.27 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=47.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCc--ccch----hHHhc------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTL--SKAQ----PLLDI------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~--~~~~----~~~~~------g~~~~~~~~~~~~~~Di 108 (351)
.|||.|+|+ |.+|+.++..|...|+ +|+++|+++ ++.+ .+... .+....+..++++++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 479999996 9999999999999886 899999874 2211 12111 12223466777889999
Q ss_pred EEEecC
Q 018694 109 VFSIVG 114 (351)
Q Consensus 109 Ii~~vp 114 (351)
||.+..
T Consensus 84 Vih~Ag 89 (327)
T 1y7t_A 84 ALLVGA 89 (327)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999863
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0035 Score=58.37 Aligned_cols=89 Identities=17% Similarity=0.298 Sum_probs=53.2
Q ss_pred CCeEEEEc-cChhhHHHHH-HHHHCCC---eEEEEeC-Cccc-chhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIG-TGVMGRSMCA-HLLNAGY---TVTVFNR-TLSK-AQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~-~L~~~g~---~V~~~dr-~~~~-~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
|+||+|+| .|.+|..+.+ .|.+.++ ++..... +..+ +..+....+.+.+ ++++ ..++|+||.|+ +....
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~-g~~~s 78 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQ-GGDYT 78 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECS-CHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECC-CchhH
Confidence 57999999 8999999999 5655554 3444433 3221 1112222233222 3444 46899999999 44444
Q ss_pred HHHhhCCCCCcccCCCCC--cEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPG--GIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~--~~ii~~s~~ 146 (351)
.+... .+. ..| .+|||.++.
T Consensus 79 ~~~a~----~~~---~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 79 NEIYP----KLR---ESGWQGYWIDAASS 100 (367)
T ss_dssp HHHHH----HHH---HTTCCCEEEECSST
T ss_pred HHHHH----HHH---HCCCCEEEEcCChh
Confidence 54554 332 234 389998853
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0022 Score=62.90 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=45.3
Q ss_pred ccccccccchhhHHHHHHHHhh-h-------ccccCC--CCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 13 SRTAHSYSLSVSSLVTLLLRRR-S-------MATVAS--TDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~--~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.|.+.+++|+..++..+..... . ++|.-. ..+..-...||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 281 ~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 281 QGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp TSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4557788888887666554111 1 111110 00000112689999999999999999999998 79999876
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0045 Score=57.07 Aligned_cols=89 Identities=24% Similarity=0.304 Sum_probs=66.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-CCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-DSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.... .+.+++.+..|+||-|++.+..+...+.
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~~---- 253 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLK---- 253 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHHT----
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHHH----
Confidence 58999999999999999998899999999999999888877775322 3444444478999999965546666665
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
- +.++..++.+...
T Consensus 254 ~----l~~~G~iv~~G~~ 267 (348)
T 3two_A 254 L----LTYNGDLALVGLP 267 (348)
T ss_dssp T----EEEEEEEEECCCC
T ss_pred H----HhcCCEEEEECCC
Confidence 2 3456666666543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.003 Score=61.62 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=48.7
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||||.|.| +|.+|..++..|.+.|++|++++|++.+.+.+. ....+...+.+.++|+||-|..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence 68999998 699999999999999999999999976643321 1112334556678999998874
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.014 Score=57.44 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCccc-C---CHH---H-hhcCCCEEEEecCChhH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLA-D---SPH---S-LASQSDVVFSIVGYPSD 118 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~-~---~~~---~-~~~~~DiIi~~vp~~~~ 118 (351)
..++|.|+|+|.+|..+++.|.+.|++|+++|.++++++.+.+. |.... . +.+ + -+.++|.+|+ ++.+..
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D~~ 204 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSDPD 204 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCHHH
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCcHH
Confidence 34789999999999999999999999999999999999888887 65331 1 221 1 1357999987 535443
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0022 Score=58.74 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=44.8
Q ss_pred CCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhcCCcccCCHHHhhcCCCEEEEec
Q 018694 47 PTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 47 ~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~g~~~~~~~~~~~~~~DiIi~~v 113 (351)
..+|||.|.|+ |.+|..++..|.+.|++|++.+|+++. +..+ ...+.-..+..+++.++|+||-+.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEV-VGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEE-ESCTTCHHHHHHHHTTCSEEEECC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEE-ecCcCCHHHHHHHHhCCCEEEECC
Confidence 44588999987 999999999999999999999998754 1000 001111223445667899999876
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0024 Score=58.80 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=53.6
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCe---EEEEe-CCc-ccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYT---VTVFN-RTL-SKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~---V~~~d-r~~-~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
+||+||| .|..|..+.+.|.+..|+ +..+. ++. .+.-.+......+....++...++|+||+|+ +....++..
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~-~~~~s~~~a 80 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSA-GSAMSKVQA 80 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECS-CHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECC-ChHHHHHHH
Confidence 6899999 699999999999987553 44443 221 1111121111222111123346899999999 444445455
Q ss_pred hCCCCCcccCCCCCcEEEecCCC
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .+ +..|..+||++.-
T Consensus 81 ~----~~---~~~G~~vID~Sa~ 96 (344)
T 3tz6_A 81 P----RF---AAAGVTVIDNSSA 96 (344)
T ss_dssp H----HH---HHTTCEEEECSST
T ss_pred H----HH---HhCCCEEEECCCc
Confidence 4 33 3467899999863
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0026 Score=57.09 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=43.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v 113 (351)
|||.|.|+ |-+|+.+++.|.+.||+|++..|+++..+ +.......+.+.++|.||-+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 79999987 99999999999999999999999865421 111111223456788888765
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0029 Score=57.67 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 44 PVCPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 44 ~~~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
+.....|+|.|.|+ |.+|..++..|.+.|++|++.+|+...
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~ 56 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATG 56 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 33334579999976 999999999999999999999997543
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.042 Score=51.70 Aligned_cols=107 Identities=14% Similarity=0.190 Sum_probs=69.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeCC----------cccchhHHhc-C------CcccCCHHHhh-cCCCEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRT----------LSKAQPLLDI-G------AHLADSPHSLA-SQSDVVF 110 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~----------~~~~~~~~~~-g------~~~~~~~~~~~-~~~DiIi 110 (351)
+||.|-|.|++|...++.|.+.|..|+ +.|.+ .+.+..+.++ | .... +.+++. .+||+.+
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~DIli 300 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDCDILV 300 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccccEEe
Confidence 689999999999999999999999864 66776 2333333332 2 1122 344433 5799999
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
-|.....-..+-.. . + +-++|+...|+ |.+ .+..+.+.++|+.|+..
T Consensus 301 PcA~~n~I~~~~a~----~----l-~ak~V~EgAN~-p~t-~eA~~iL~~rGI~~~PD 347 (424)
T 3k92_A 301 PAAISNQITAKNAH----N----I-QASIVVERANG-PTT-IDATKILNERGVLLVPD 347 (424)
T ss_dssp ECSCSSCBCTTTGG----G----C-CCSEEECCSSS-CBC-HHHHHHHHHTTCEEECH
T ss_pred ecCcccccChhhHh----h----c-CceEEEcCCCC-CCC-HHHHHHHHHCCCEEECc
Confidence 88833222222222 2 2 56789988888 443 34556677788888743
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0063 Score=55.34 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=34.6
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
..|+|.|.|+ |.+|..++..|.+.|++|++.+|+.++.+.
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 50 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN 50 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHH
Confidence 3478999977 999999999999999999999998765443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.021 Score=53.07 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+... .+..+.+. ..|+||-|+..+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~ 276 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA 276 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCH
Confidence 589999999999999998888998 79999999998888777675321 12222221 478888888544
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 277 ~~~~~~~~ 284 (376)
T 1e3i_A 277 QTLKAAVD 284 (376)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0042 Score=61.05 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=30.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 327 arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 689999999999999999999998 799999875
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0028 Score=56.31 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=48.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
|||.|.|+ |.+|..++..|.+. |++|++.+|++++.+.+...++.. ..+..++++.+|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57999986 99999999999998 999999999987766554444321 1123455667888888774
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.019 Score=53.37 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=55.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+... .+..+.+. ..|+||-|+..+
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~ 272 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 272 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCH
Confidence 589999999999999998888898 79999999998888777775321 12222221 478888888555
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 273 ~~~~~~~~ 280 (373)
T 1p0f_A 273 ETMMNALQ 280 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=54.72 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=55.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+... .+..+.+. ..|+||-|+..+
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~ 274 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNV 274 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCH
Confidence 579999999999999998888898 79999999999887777675431 12222221 478888888655
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 275 ~~~~~~~~ 282 (378)
T 3uko_A 275 SVMRAALE 282 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55665554
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.004 Score=56.79 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 47 PTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 47 ~~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
..||+|.|.| +|.+|..++..|.+.|++|++.+|++.
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 56 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT 56 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 3568999997 699999999999999999999999754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0035 Score=58.44 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=32.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|||.|||+|..|..+|..|++.|++|++++++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 7999999999999999999999999999998754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0044 Score=55.90 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp 114 (351)
.|||.|.|+ |.+|..++..|.+.|++|++.+|+++.-. +....+.-..+..++++ .+|+||.|..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 478999986 99999999999999999999998754311 11111222223445554 4899998873
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0072 Score=54.96 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=29.4
Q ss_pred ccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 13 SRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
-||..++...+..|..+...............|+....|+.+| |.|.+|.++++.|++.|++|++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~ 79 (317)
T 3oec_A 9 MGTLEAQTQGPGSMVDPVRRSTRVSARGQGARMNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC 79 (317)
T ss_dssp ---------------------------------CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccchhccccCCcccccHHHHhhccccccccchhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 4566666666666665555543332222233444333456666 56999999999999999999999886
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.012 Score=56.99 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=71.4
Q ss_pred CCCCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccC-CHHHhhcCCCEEEEe--cCC-hhHHH
Q 018694 47 PTNTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLAD-SPHSLASQSDVVFSI--VGY-PSDVR 120 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~--vp~-~~~~~ 120 (351)
..++||.|||.|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|+.+.. ...+.+.++|+||+. +|+ ...+.
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~ 99 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIV 99 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHH
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHH
Confidence 34579999999999996 99999999999999997643 34556667776542 222345679999875 322 12233
Q ss_pred HHhhCCC-----CCccc-CCCC-CcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 121 HVLLHPS-----SGALS-GLRP-GGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 121 ~v~~~~~-----~~i~~-~l~~-~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
.+..... .++.. .+.. ..+-|.-|+|...++.-+...+...|
T Consensus 100 ~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 148 (494)
T 4hv4_A 100 AAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG 148 (494)
T ss_dssp HHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence 2222100 00111 1122 24677777787777766777776555
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0053 Score=60.49 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=50.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--C-CcccCCHHH-hhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--G-AHLADSPHS-LASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--g-~~~~~~~~~-~~~~~DiIi~~vp~~~ 117 (351)
++|.|+|+|.+|..+++.|.+.|++|+++|.++++.+.+..- | ..-...+++ -+.++|.++++++.+.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 789999999999999999999999999999999987765310 0 111111222 2468999999995554
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.29 E-value=0.024 Score=52.69 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=53.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... .+..+.+. ..|+||-|++.+
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~ 272 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL 272 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCH
Confidence 589999999999999999888998 79999999998887777665321 11222221 467888877544
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 273 ~~~~~~~~ 280 (374)
T 2jhf_A 273 DTMVTALS 280 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0068 Score=58.15 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=72.3
Q ss_pred CCeEEEEccC----hhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTG----VMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G----~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
..+|+|||++ .+|..+.++|.+.| ..|+.++...+.+ .|+..+.+..++....|++++|+ ++..+.+++
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~v-p~~~~~~~v 81 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVV-PKRFVKDTL 81 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECS-CHHHHHHHH
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEec-CHHHHHHHH
Confidence 3679999998 88999999999885 5666665542221 37888899999888899999999 666666677
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChh-------HHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPS-------LASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~~~~~~v 166 (351)
+ ++... .- +.++..+.+.+. ..+++.+..++.|++++
T Consensus 82 ~----e~~~~-Gi-~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi 125 (457)
T 2csu_A 82 I----QCGEK-GV-KGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII 125 (457)
T ss_dssp H----HHHHH-TC-CEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred H----HHHHc-CC-CEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence 6 44432 12 244545555432 14556666665566665
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0078 Score=55.41 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=53.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-----CCHHHhh------cCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLA------SQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~------~~~DiIi~~vp~~~ 117 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... .+..+.+ ...|+||.|++.+.
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~ 248 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPK 248 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHH
Confidence 579999999999999999999999 99999999888877776664321 1222221 14688888885445
Q ss_pred HHHHHhh
Q 018694 118 DVRHVLL 124 (351)
Q Consensus 118 ~~~~v~~ 124 (351)
.+...+.
T Consensus 249 ~~~~~~~ 255 (348)
T 2d8a_A 249 ALEQGLQ 255 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.029 Score=52.09 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=54.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... .+..+.+. ..|+||-|+..+
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~ 273 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNV 273 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCH
Confidence 589999999999999999888998 79999999998888777675321 12222221 478888888554
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 274 ~~~~~~~~ 281 (374)
T 1cdo_A 274 GVMRNALE 281 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0046 Score=53.20 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=31.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
..|.|||+|.-|...|..|+++|++|+++++++.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4699999999999999999999999999998753
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0032 Score=54.78 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA 85 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~ 85 (351)
|++|.|.|+ |.+|..+++.|++.|++|++.+|++++.
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~ 38 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI 38 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc
Confidence 457888866 9999999999999999999999987654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0095 Score=54.53 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=47.4
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccch----hHHh-------cCCc-------ccCCHHHhhcCCCE
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ----PLLD-------IGAH-------LADSPHSLASQSDV 108 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~----~~~~-------~g~~-------~~~~~~~~~~~~Di 108 (351)
++|||.|.| +|.+|..++..|.+.|++|++.+|++.... .+.. .++. -..+..++++++|+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 103 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH 103 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence 458999998 599999999999999999999999754322 2211 1211 11223456678999
Q ss_pred EEEecC
Q 018694 109 VFSIVG 114 (351)
Q Consensus 109 Ii~~vp 114 (351)
||-|..
T Consensus 104 Vih~A~ 109 (351)
T 3ruf_A 104 VLHQAA 109 (351)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998874
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0085 Score=55.33 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=48.0
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc--hhHHhc-CCcc-----cCC---HHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA--QPLLDI-GAHL-----ADS---PHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~--~~~~~~-g~~~-----~~~---~~~~~~~~DiIi~~vp 114 (351)
.|+|.|.|+ |.+|..+++.|.+.|++|++.+|++++. +.+... ++.. .++ ..++++.+|+||.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 478999985 9999999999999999999999987654 333321 2211 112 3455778999998773
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0094 Score=54.25 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchh------HHh-cCC-------cccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP------LLD-IGA-------HLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~------~~~-~g~-------~~~~~~~~~~~~~DiIi~~v 113 (351)
+|||.|.| +|.+|+.++..|.+.|++|.+..|+++..+. +.. .++ .-..+..++++.+|+||-+.
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 57899997 6999999999999999999998887654321 111 111 11234456777899999876
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.06 Score=50.71 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=67.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeC----------CcccchhHHhc-CC------------cccCCHHHhh-c
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNR----------TLSKAQPLLDI-GA------------HLADSPHSLA-S 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr----------~~~~~~~~~~~-g~------------~~~~~~~~~~-~ 104 (351)
++|.|.|.|++|...++.|.+.|..|+ +.|. +.+.+..+.+. |. ....+.++.. .
T Consensus 211 k~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~ 290 (421)
T 1v9l_A 211 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL 290 (421)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcC
Confidence 689999999999999999999999877 6676 33333333222 11 1221334443 4
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+||+.+-|. -+..+ .. .-.+.+ +-++|+.-.|. |.+ .+-.+.+.++|+.|+..
T Consensus 291 ~~Dil~P~A-~~~~I----~~---~~a~~l-~ak~V~EgAN~-p~t-~~a~~~l~~~Gi~~~PD 343 (421)
T 1v9l_A 291 DVDIFVPAA-IENVI----RG---DNAGLV-KARLVVEGANG-PTT-PEAERILYERGVVVVPD 343 (421)
T ss_dssp CCSEEEECS-CSSCB----CT---TTTTTC-CCSEEECCSSS-CBC-HHHHHHHHTTTCEEECH
T ss_pred CccEEEecC-cCCcc----ch---hhHHHc-CceEEEecCCC-cCC-HHHHHHHHHCCCEEeCh
Confidence 799998888 32222 21 111222 45688888887 433 34556677788888743
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.019 Score=49.28 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=51.9
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|++|.|.| .|.+|.++++.|++.|++|++.+|++++.+.+.+.- -.+..++..=+.....++.++.
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~~--- 67 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLFE--- 67 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHHH---
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHHH---
Confidence 34566665 589999999999999999999999988776655431 1122333333335666777776
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
++.... .++|+...
T Consensus 68 -~~~~~~---d~lv~~Ag 81 (230)
T 3guy_A 68 -QLDSIP---STVVHSAG 81 (230)
T ss_dssp -SCSSCC---SEEEECCC
T ss_pred -HHhhcC---CEEEEeCC
Confidence 554322 56676554
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.026 Score=52.39 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... .+..+.+. ..|+||-|++.+
T Consensus 192 ~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~ 271 (373)
T 2fzw_A 192 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV 271 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcH
Confidence 589999999999999998888898 79999999998887776665321 12222221 478888888554
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 272 ~~~~~~~~ 279 (373)
T 2fzw_A 272 KVMRAALE 279 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.027 Score=51.83 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=59.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc------CC-HHHh---h-----cCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA------DS-PHSL---A-----SQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~------~~-~~~~---~-----~~~DiIi~~vp 114 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.... .+ .+++ . ...|+||-|++
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g 249 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG 249 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCC
Confidence 58999999999999999888899999999999988887777664321 11 1121 1 24788888885
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.+..+...+. .+.++..++.+.
T Consensus 250 ~~~~~~~~~~--------~l~~~G~iv~~G 271 (352)
T 1e3j_A 250 NEKCITIGIN--------ITRTGGTLMLVG 271 (352)
T ss_dssp CHHHHHHHHH--------HSCTTCEEEECS
T ss_pred CHHHHHHHHH--------HHhcCCEEEEEe
Confidence 5444555444 233555555554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0085 Score=52.73 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=32.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.| .|.+|.++++.|++.|++|++.+|+.++.+.+.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVE 70 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3455555 699999999999999999999999987765543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0055 Score=54.27 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=46.8
Q ss_pred eEEEEcc-ChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEec
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~v 113 (351)
||.|.|+ |.+|..+++.|.+. |++|++.+|++++.+.+...++.. ..+..++++.+|+||.+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 73 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLIS 73 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeC
Confidence 5889986 99999999999998 999999999987766554444322 112334566788888776
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.012 Score=53.84 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=52.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-----CCHHHhh----cCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLA----SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~----~~~DiIi~~vp~~~~~~ 120 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.... .+..+.+ ...|+||.|+..+..+.
T Consensus 166 ~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 245 (339)
T 1rjw_A 166 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQ 245 (339)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHHH
Confidence 58999999999999999999999999999999988877766664321 1111111 24667777664434444
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
..+.
T Consensus 246 ~~~~ 249 (339)
T 1rjw_A 246 SAYN 249 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.012 Score=55.84 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=29.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus 41 ~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D 73 (434)
T 1tt5_B 41 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 73 (434)
T ss_dssp CCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 579999999999999999999998 79999865
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.027 Score=53.66 Aligned_cols=115 Identities=11% Similarity=0.131 Sum_probs=72.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc--hhHHhcCCccc--CCHHHhhcCCCEEEEecC--C-hhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA--QPLLDIGAHLA--DSPHSLASQSDVVFSIVG--Y-PSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~--~~~~~~g~~~~--~~~~~~~~~~DiIi~~vp--~-~~~~~~v 122 (351)
+||.|||.|..|.+.++.|.+.|++|+++|...... ..+. .|+.+. ....+.+..+|+||+... + ...+..+
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~~a 84 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAA 84 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHHHH
Confidence 689999999999999999999999999999764332 3344 676653 213455568898888742 1 1223222
Q ss_pred hhCCCCCcc-------cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 123 LLHPSSGAL-------SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 123 ~~~~~~~i~-------~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
..... .+. .......+-|.-++|...++.-+...+...|....
T Consensus 85 ~~~~~-~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 134 (439)
T 2x5o_A 85 ADAGI-EIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVG 134 (439)
T ss_dssp HHTTC-EEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHCCC-cEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEE
Confidence 11100 111 11233457777777877777777777776665443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0089 Score=55.61 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=61.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc---CCH---HHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA---DSP---HSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~---~~~---~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.... .+. +++....|+||.|++.+..+...+
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~ 275 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT 275 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHHH
Confidence 58999999999999999888899999999999998887777665321 111 112235789999885544555555
Q ss_pred hCCCCCcccCCCCCcEEEecCC
Q 018694 124 LHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. - +.++..++.+..
T Consensus 276 ~----~----l~~~G~iv~~G~ 289 (369)
T 1uuf_A 276 T----L----LKRDGTMTLVGA 289 (369)
T ss_dssp T----T----EEEEEEEEECCC
T ss_pred H----H----hccCCEEEEecc
Confidence 4 2 234556665554
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.012 Score=53.58 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------CCcc-------cCCHHHhhc--CCCEEE
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------GAHL-------ADSPHSLAS--QSDVVF 110 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------g~~~-------~~~~~~~~~--~~DiIi 110 (351)
.+|+|.|.| +|.+|..+++.|.+.|++|++.+|+.+......+. ++.. ..+..++++ .+|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 347899997 59999999999999999999999987665433211 2211 112334444 789998
Q ss_pred EecC
Q 018694 111 SIVG 114 (351)
Q Consensus 111 ~~vp 114 (351)
-+..
T Consensus 84 h~A~ 87 (341)
T 3enk_A 84 HFAA 87 (341)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 8773
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.01 Score=51.99 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=53.4
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~~~v~~~ 125 (351)
.|..+| |.+.+|.++++.|++.|.+|++.+|++++.+.+.+++. ++..+. +.++.++++++.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~v~~~v~- 67 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERP-------------NLFYFHGDVADPLTLKKFVE- 67 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCT-------------TEEEEECCTTSHHHHHHHHH-
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC-------------CEEEEEecCCCHHHHHHHHH-
Confidence 455666 67899999999999999999999999877766654431 122222 235666777776
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
++...+.+=+++|+..
T Consensus 68 ---~~~~~~g~iDiLVNNA 83 (247)
T 3ged_A 68 ---YAMEKLQRIDVLVNNA 83 (247)
T ss_dssp ---HHHHHHSCCCEEEECC
T ss_pred ---HHHHHcCCCCEEEECC
Confidence 5555555555677654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.12 Score=50.05 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CCC-----Cc
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DFE-----PG 279 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~-----~~ 279 (351)
+...++|++.|.+....+.+++|.+.+.++ .+++..++.++.+.+. ..++.++...+.+.+. +.. +-
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~ 401 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKF 401 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhcCHH
Confidence 478999999999999999999999997665 7899999999999886 5677777554443322 111 11
Q ss_pred c--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 280 F--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 280 ~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
| .+.......++++..+.+.|+|+|.+.+....+..-+. +.-...+++..|...|
T Consensus 402 f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~----~~~~a~liqa~Rd~FG 458 (497)
T 2p4q_A 402 FADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRS----ERLPANLLQAQRDYFG 458 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC----SSCTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc----CCchhHHHHHHHHhcC
Confidence 2 23333335678999999999999999988886554432 2233467777776654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.022 Score=52.52 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=59.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-C-C---HHHh---h-----cCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-D-S---PHSL---A-----SQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-~-~---~~~~---~-----~~~DiIi~~vp~ 115 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... + + .++. + ...|+||.|++.
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~ 252 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 252 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCC
Confidence 589999999999999998888998 89999999988887777675321 1 1 1111 1 247888888855
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
+..+...+. .+.++..++.+.
T Consensus 253 ~~~~~~~~~--------~l~~~G~iv~~G 273 (356)
T 1pl8_A 253 EASIQAGIY--------ATRSGGTLVLVG 273 (356)
T ss_dssp HHHHHHHHH--------HSCTTCEEEECS
T ss_pred hHHHHHHHH--------HhcCCCEEEEEe
Confidence 444554444 234555555554
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0068 Score=56.87 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=32.7
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+..++|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3447999999999999999999999999999999764
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.02 Score=52.75 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=30.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 37 ~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~ 70 (346)
T 1y8q_A 37 SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ 70 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 589999999999999999999998 799998764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0086 Score=53.86 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=32.5
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
++|||.|.|+ |.+|..++..|.+.|++|++.+|++.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 4689999987 99999999999999999999999865
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=52.98 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=44.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cCC-----HHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-ADS-----PHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~~-----~~~~~~~~DiIi~~vp 114 (351)
|||.|.|+ |.+|..+++.|.+.|++|++.+|+++........++.. ..| ..+.++. |+||-+..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~ 71 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAA 71 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCC
Confidence 68999987 99999999999999999999999876544332222211 001 2333444 88887763
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0074 Score=56.05 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=50.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH-hcCCccc---CCHH---HhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-DIGAHLA---DSPH---SLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~-~~g~~~~---~~~~---~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+|.|+|+|.+|...++.+...|.+|+++++++++.+.+. +.|.... .+.+ +.....|+||.|++.+..+...
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 268 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPL 268 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHHHH
Confidence 5899999999999999999999999999999988877665 4453211 1111 1123467777776433333333
Q ss_pred h
Q 018694 123 L 123 (351)
Q Consensus 123 ~ 123 (351)
+
T Consensus 269 ~ 269 (366)
T 1yqd_A 269 F 269 (366)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0077 Score=54.57 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhc--CCCEEEEecC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLAS--QSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~--~~DiIi~~vp 114 (351)
||||.|.| +|.+|..++..|.+.|++|++.+|+..........++.. ..+..++++ .+|+||-+..
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~ 76 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAA 76 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 68999996 599999999999999999999998754322111112211 112334555 7899998874
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0032 Score=58.78 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC---eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh-----hHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY---TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP-----SDVR 120 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~---~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~-----~~~~ 120 (351)
.||.|||. |..|..-+..+...|. +|+++|+++... |... +.+.++|+||-|+.-+ --.+
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~-----~~i~~aDivIn~vlig~~aP~Lvt~ 283 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGPF-----DEIPQADIFINCIYLSKPIAPFTNM 283 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC-----THHHHSSEEEECCCCCSSCCCSCCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCch-----hhHhhCCEEEECcCcCCCCCcccCH
Confidence 68999999 9999999999999998 899999986221 2221 2356899999999421 1233
Q ss_pred HHhhCCCCCcccCC-CCCcEEEecCCC
Q 018694 121 HVLLHPSSGALSGL-RPGGIIVDMTTS 146 (351)
Q Consensus 121 ~v~~~~~~~i~~~l-~~~~~ii~~s~~ 146 (351)
+.+. .+ +++.+|||++.-
T Consensus 284 e~v~--------~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 284 EKLN--------NPNRRLRTVVDVSAD 302 (394)
T ss_dssp HHHC--------CTTCCCCEEEETTCC
T ss_pred HHHh--------cCcCCCeEEEEEecC
Confidence 3333 34 789999999853
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.014 Score=56.88 Aligned_cols=114 Identities=16% Similarity=0.021 Sum_probs=71.2
Q ss_pred CCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc--cchhHHhcCCccc--CCHHHhhcCCCEEEEe--cCC-hhHHH
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS--KAQPLLDIGAHLA--DSPHSLASQSDVVFSI--VGY-PSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~--~~~~~~~~g~~~~--~~~~~~~~~~DiIi~~--vp~-~~~~~ 120 (351)
.+||.|||.|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|+.+. .+.+.+..++|+||.. +|+ ...+.
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~ 98 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIE 98 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHH
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHH
Confidence 378999999999996 79989999999999998642 3456777787654 2344444678998875 322 22333
Q ss_pred HHhhCCC-----CCccc-CCC--CCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 121 HVLLHPS-----SGALS-GLR--PGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 121 ~v~~~~~-----~~i~~-~l~--~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
.+..... .++.. .+. ...+-|.-++|...++.-+...+...|
T Consensus 99 ~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G 148 (524)
T 3hn7_A 99 YMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG 148 (524)
T ss_dssp HHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 2222100 01111 122 234677777787776666666666544
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.014 Score=53.41 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc----chhHHh-------cCCcc-------cCCHHHhhcCCCE
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK----AQPLLD-------IGAHL-------ADSPHSLASQSDV 108 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~----~~~~~~-------~g~~~-------~~~~~~~~~~~Di 108 (351)
.||||.|.|+ |.+|..++..|.+.|++|++++|++.. ++.+.+ .++.. ..+..++++.+|+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 105 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY 105 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence 3579999987 999999999999999999999997542 222211 12211 1123455678898
Q ss_pred EEEecC
Q 018694 109 VFSIVG 114 (351)
Q Consensus 109 Ii~~vp 114 (351)
||.|..
T Consensus 106 vih~A~ 111 (352)
T 1sb8_A 106 VLHQAA 111 (352)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 888874
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.01 Score=54.52 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=47.5
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHC-CC-eEEEEeCCcccchhHHhc----CCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPLLDI----GAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~~~~----g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
.|+|.|.| +|.+|..+++.|.+. |+ +|++++|++.+...+... ++.. ..+..++++.+|+||-+..
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA 100 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence 37899997 599999999999998 97 999999997765544321 2111 1123355667899888873
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.017 Score=53.80 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=65.0
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCC--CeEEE--EeCCcccchhHHhc-CCcc--------------------------c
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAG--YTVTV--FNRTLSKAQPLLDI-GAHL--------------------------A 96 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g--~~V~~--~dr~~~~~~~~~~~-g~~~--------------------------~ 96 (351)
|.||+|+|+ |.+|+.....+.+.. ++|.. .+++.+++.....+ +... .
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~ 83 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 83 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence 578999999 999999999998753 45553 46776554333222 2211 0
Q ss_pred CCHHHhhc-CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEEe
Q 018694 97 DSPHSLAS-QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 97 ~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v~ 167 (351)
+...+++. ++|+|+.|++....++..+. ++..|+.|+..++- .......+.+...+.|+.++.
T Consensus 84 ~~~~el~~~~iDvVV~ai~G~aGl~ptla--------Ai~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~liP 148 (388)
T 1r0k_A 84 DALVEAAMMGADWTMAAIIGCAGLKATLA--------AIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLP 148 (388)
T ss_dssp HHHHHHHTSCCSEEEECCCSGGGHHHHHH--------HHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHcCCCCEEEEeCCCHHHHHHHHH--------HHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 11123332 27999999965555655554 23467777755441 112233445555556777763
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.027 Score=52.98 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=49.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-----CCHHHhh------cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLA------SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~------~~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... .+..+.+ ...|+||-|+..+
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~ 293 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVP 293 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCc
Confidence 589999999999999999888999 89999999988887777665321 1122211 1477777777544
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.018 Score=53.55 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCeEEEEcc-ChhhHHHHH-HHHHCCC---eEEEE-eCCcc-cchhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCA-HLLNAGY---TVTVF-NRTLS-KAQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~-~L~~~g~---~V~~~-dr~~~-~~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
.+||+|||+ |..|..|.+ .|.+..+ ++..+ .++.. ++..+......+.. +.++ ..++|+||+|+ +....
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~-~~~vDvvf~a~-~~~~s 81 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDD-LKKCDVIITCQ-GGDYT 81 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHH-HHTCSEEEECS-CHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCChhH-hcCCCEEEECC-ChHHH
Confidence 489999986 999999999 7777663 55544 33222 12223222222221 2333 57899999999 54444
Q ss_pred HHHhhCCCCCcccCCCCC--cEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPG--GIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~--~~ii~~s~ 145 (351)
.+... .+. ..| +.|||.++
T Consensus 82 ~~~~~----~~~---~~G~k~~VID~ss 102 (377)
T 3uw3_A 82 NDVFP----KLR---AAGWNGYWIDAAS 102 (377)
T ss_dssp HHHHH----HHH---HTTCCSEEEECSS
T ss_pred HHHHH----HHH---HCCCCEEEEeCCc
Confidence 54554 332 244 48999886
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.012 Score=53.61 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=46.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-CCc-----ccC---CHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GAH-----LAD---SPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~~-----~~~---~~~~~~~~~DiIi~~v 113 (351)
|||.|.|+ |.+|..++..|.+. |++|++.+|++++.+.+... ++. ..+ ...++++.+|+||-|.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 68999976 99999999999998 89999999987765543221 221 111 1344566789999875
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.083 Score=50.79 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CCC-----Cc
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DFE-----PG 279 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~-----~~ 279 (351)
+...++|++.|.+....+.+++|.+.+.++ .+++..++.++.+.+. ..++.++...+.+.+. +.. +-
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~ 396 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDY 396 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGGSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhcCHH
Confidence 788999999999999999999999997665 7899999999998776 5677776554433322 111 11
Q ss_pred c--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhc
Q 018694 280 F--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLN 337 (351)
Q Consensus 280 ~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~ 337 (351)
| .+.......++++..+-+.|+|+|.+.+....+..-+. +.-...+++..|...
T Consensus 397 ~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~----~~~~~~l~qa~rd~f 452 (474)
T 2iz1_A 397 FVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRS----ENLPANLIQAQRDYF 452 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC----SSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc----CCchhhHHHHHHHhc
Confidence 2 13333344678999999999999999998886555432 223346777776655
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0019 Score=57.04 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC-------cccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA-------HLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~-------~~~~~~~~~~~~~DiIi~~v 113 (351)
|+||.|.|+ |.+|..+++.|.+.|++|++.+|++++... .++ .-..+..++++.+|+||.+.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 71 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAE---AHEEIVACDLADAQAVHDLVKDCDGIIHLG 71 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCC---TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccC---CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence 468999987 999999999999999999999998754211 111 11112334556778777776
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.034 Score=53.74 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccC--CHHHhhcCCCEEEEec--CC-hhHHH
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLAD--SPHSLASQSDVVFSIV--GY-PSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~--~~~~~~~~~DiIi~~v--p~-~~~~~ 120 (351)
..+||.|||.|..|.+ +|+.|.+.|++|.++|..... .+.+.+.|+.+.. +. +.+..+|+||+.- |+ ...+.
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~p~~~ 96 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVSSAISADNPEIV 96 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECTTCCTTCHHHH
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHH
Confidence 3578999999999997 999999999999999986533 3456666766542 23 3356789888753 11 12222
Q ss_pred HHhhCCC-----C-CcccCCC-CCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 121 HVLLHPS-----S-GALSGLR-PGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 121 ~v~~~~~-----~-~i~~~l~-~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
....... . .+...+. ...+-|.-+||...++.-+...+...|
T Consensus 97 ~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 145 (491)
T 2f00_A 97 AAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAG 145 (491)
T ss_dssp HHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2111000 0 0111112 234567777787777777777776555
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0085 Score=53.77 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=44.7
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhc--CCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLAS--QSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~--~~DiIi~~vp 114 (351)
+|||.|.|+ |.+|..+++.|.+. |++|++.+|++...+ +.. ++.. ..+..++++ .+|+||.|..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~-~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 77 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VVN-SGPFEVVNALDFNQIEHLVEVHKITDIYLMAA 77 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HHH-SSCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-ccC-CCceEEecCCCHHHHHHHHhhcCCCEEEECCc
Confidence 478999987 99999999999998 899999999866532 211 1111 112234455 6888888763
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.018 Score=53.56 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=52.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-----CCHHHhhc--------CCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLAS--------QSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~~--------~~DiIi~~vp~ 115 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+..++.|+... .+..+.+. ..|+||-|+..
T Consensus 184 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 184 STVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGV 263 (370)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCC
Confidence 579999999999999999888999 89999999888877766665321 12222222 35777777744
Q ss_pred hhHHHHHhh
Q 018694 116 PSDVRHVLL 124 (351)
Q Consensus 116 ~~~~~~v~~ 124 (351)
+..+...+.
T Consensus 264 ~~~~~~~~~ 272 (370)
T 4ej6_A 264 AETVKQSTR 272 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444554443
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.029 Score=54.03 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCccc-chhHHhcCCccc--CCHHHhhcCCCEEEEec--CC-hhHHH
Q 018694 48 TNTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLA--DSPHSLASQSDVVFSIV--GY-PSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~--~~~~~~~~~~DiIi~~v--p~-~~~~~ 120 (351)
.++||.|||.|..|.+ +|+.|.+.|++|.++|..... .+.+.+.|+.+. .+. +.+..+|+||+.- |+ ...+.
T Consensus 17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~~~~~ 95 (475)
T 1p3d_A 17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVSSAIKDDNPELV 95 (475)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEECTTSCTTCHHHH
T ss_pred cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHH
Confidence 4578999999999997 999999999999999986533 345666676653 223 3456789888753 11 12222
Q ss_pred HHhhCCC-----C-CcccCCC-CCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 121 HVLLHPS-----S-GALSGLR-PGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 121 ~v~~~~~-----~-~i~~~l~-~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
....... . .+...+. ...+-|.-+||...++.-+...+...|
T Consensus 96 ~a~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 144 (475)
T 1p3d_A 96 TSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAK 144 (475)
T ss_dssp HHHHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2111000 0 0011111 234667777787777777777776555
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.018 Score=53.47 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=52.4
Q ss_pred CeEEEEcc-ChhhHHHHH-HHHHCCC---eEEEE-eCCccc-chhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGT-GVMGRSMCA-HLLNAGY---TVTVF-NRTLSK-AQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~-~L~~~g~---~V~~~-dr~~~~-~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
|||+|||+ |..|..+.+ .|.+..+ ++..+ .++..+ +..+......+.. +.++ ..++|++|+|+ +.....
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~-~~~~Dvvf~a~-~~~~s~ 78 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIES-LKQLDAVITCQ-GGSYTE 78 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHH-HTTCSEEEECS-CHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChhH-hccCCEEEECC-ChHHHH
Confidence 68999986 999999999 7777663 55544 333211 2223222222221 2333 57899999999 444444
Q ss_pred HHhhCCCCCcccCCCCC--cEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPG--GIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~--~~ii~~s~ 145 (351)
+... .+. ..| +.|||.++
T Consensus 79 ~~~~----~~~---~~G~k~~VID~ss 98 (370)
T 3pzr_A 79 KVYP----ALR---QAGWKGYWIDAAS 98 (370)
T ss_dssp HHHH----HHH---HTTCCCEEEECSS
T ss_pred HHHH----HHH---HCCCCEEEEeCCc
Confidence 4444 332 234 48999886
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.096 Score=50.44 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CCC-----Cc
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DFE-----PG 279 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~-----~~ 279 (351)
+...++|++.|.+....+.+++|.+.+.++ .+++..++.++.+.+. ..++.++...+.+.+. +.. +-
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~ 404 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPY 404 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcCHH
Confidence 778999999999999999999999997666 7899999999998776 5677776554443322 111 11
Q ss_pred c--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhc
Q 018694 280 F--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLN 337 (351)
Q Consensus 280 ~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~ 337 (351)
| .++......++++..+-+.|+|+|.+.+....+..-+.. .-...+++..|...
T Consensus 405 f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~----~~~~~l~qa~Rd~F 460 (480)
T 2zyd_A 405 FKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAA----VLPANLIQAQRDYF 460 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCS----SCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC----CchhhHHHHHHHhc
Confidence 2 233333456789999999999999999988876554422 23346777776655
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.028 Score=51.58 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=51.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc------CCHHHhhc-----CCCEEEEecCChh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA------DSPHSLAS-----QSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~------~~~~~~~~-----~~DiIi~~vp~~~ 117 (351)
.+|.|+|+ |.+|..+++.+...|.+|++.++++++.+.+.+.|.... .+..+.+. ..|++|.++....
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~ 250 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEA 250 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHH
Confidence 57999999 999999999999999999999999888766665553211 12222221 3677777774444
Q ss_pred HHHHHh
Q 018694 118 DVRHVL 123 (351)
Q Consensus 118 ~~~~v~ 123 (351)
.++..+
T Consensus 251 ~~~~~~ 256 (347)
T 2hcy_A 251 AIEAST 256 (347)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444444
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.019 Score=50.95 Aligned_cols=81 Identities=10% Similarity=0.084 Sum_probs=52.1
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCCC
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHPS 127 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~~ 127 (351)
++.|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+. + . ...++.++.+ .+...++.++.
T Consensus 23 ~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~-~------~---~~~~~~~~~~Dv~d~~~v~~~~~--- 89 (272)
T 2nwq_A 23 TLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGE-L------S---AKTRVLPLTLDVRDRAAMSAAVD--- 89 (272)
T ss_dssp EEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-H------T---TTSCEEEEECCTTCHHHHHHHHH---
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-h------h---cCCcEEEEEcCCCCHHHHHHHHH---
Confidence 44444 568999999999999999999999998766554332 0 0 0022333332 35667777777
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 90 -~~~~~~g~iD~lvnnAG 106 (272)
T 2nwq_A 90 -NLPEEFATLRGLINNAG 106 (272)
T ss_dssp -TCCGGGSSCCEEEECCC
T ss_pred -HHHHHhCCCCEEEECCC
Confidence 55554444457776654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=48.91 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=36.3
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG 92 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g 92 (351)
++|.|+| +|.+|..+++.+...|.+|++.++++++.+.+.+.|
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g 83 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 83 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 5799999 699999999999999999999999987766555434
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.012 Score=54.02 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=52.3
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHhcCCcccCCHHH------hhc---CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLDIGAHLADSPHS------LAS---QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~------~~~---~~DiIi~~vp~~~~ 118 (351)
.+|.|+|+|.+|...++.+... |.+|++.++++++.+.+++.|....-+..+ .+. ..|+||-|+..+..
T Consensus 172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~ 251 (344)
T 2h6e_A 172 PVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEET 251 (344)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChHH
Confidence 5899999999999999988888 999999999988887777666533222111 111 46777777744434
Q ss_pred HHHHhh
Q 018694 119 VRHVLL 124 (351)
Q Consensus 119 ~~~v~~ 124 (351)
+...+.
T Consensus 252 ~~~~~~ 257 (344)
T 2h6e_A 252 TYNLGK 257 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.019 Score=52.17 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=45.2
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHH---h-----c-------CCcccCCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL---D-----I-------GAHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~---~-----~-------g~~~~~~~~~~~~~~DiIi~~ 112 (351)
+++|.|.| +|.+|+.++..|.+.|++|++..|+++..+... + . .+.-..+.+++++.+|+||-+
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 84 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHV 84 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEe
Confidence 47898887 799999999999999999999888866322111 0 0 122223445667778888876
Q ss_pred c
Q 018694 113 V 113 (351)
Q Consensus 113 v 113 (351)
.
T Consensus 85 A 85 (337)
T 2c29_D 85 A 85 (337)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.02 Score=50.13 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=30.1
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccc
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKA 85 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~ 85 (351)
++|.|. |.|.+|.++++.|++.|++|++.+|++++.
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~ 58 (253)
T 2nm0_A 22 RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP 58 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh
Confidence 456666 559999999999999999999999987654
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.015 Score=53.41 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC---CeEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG---YTVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g---~~V~~~ 78 (351)
|+||||+|+|.+|..+.+.|.+.+ ++|+.+
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI 34 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI 34 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 469999999999999999998763 566544
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0026 Score=58.34 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=50.3
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEE---EE-eCCc-ccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVT---VF-NRTL-SKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~---~~-dr~~-~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
|||+|+| .|.+|..+.+.|.+++|++. .. ++.. .+.-.+....+.+.. ++++ . .+|+||.|+|. ....+.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~-~-~~DvV~~a~g~-~~s~~~ 77 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGP-L-PVDLVLASAGG-GISRAK 77 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSC-C-CCSEEEECSHH-HHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhh-c-CCCEEEECCCc-cchHHH
Confidence 6899999 99999999999997777532 22 2111 000001111122211 2223 3 79999999943 333434
Q ss_pred hhCCCCCcccCCCCCcEEEecCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. .. +..|..+||.++-
T Consensus 78 a~----~~---~~~G~~vId~s~~ 94 (331)
T 2yv3_A 78 AL----VW---AEGGALVVDNSSA 94 (331)
T ss_dssp HH----HH---HHTTCEEEECSSS
T ss_pred HH----HH---HHCCCEEEECCCc
Confidence 43 22 3467789998864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.02 Score=52.41 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=52.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-----CCHHHhh----cCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLA----SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~----~~~DiIi~~vp~~~~~~ 120 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.... .+..+.+ ...|++|.|+..+..+.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~ 247 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFS 247 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHH
Confidence 57999999999999999999999999999999998887777664321 1121111 14566666664444444
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
..+.
T Consensus 248 ~~~~ 251 (340)
T 3s2e_A 248 QAIG 251 (340)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=53.76 Aligned_cols=44 Identities=23% Similarity=0.168 Sum_probs=39.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|.
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence 58999999999999999999999999999999888877766664
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0086 Score=56.87 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=31.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
++++|.|||+|..|...|..|++.|++|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45689999999999999999999999999999865
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.03 Score=49.64 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=31.3
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
++.|. |.|.+|.++++.|++.|++|++.+|++++.+.+
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 62 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTT 62 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45555 569999999999999999999999998765443
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0052 Score=56.33 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~ 78 (351)
|+||||+|+|.+|..+.+.|.+. .++|+.+
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~~~veivai 31 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAV 31 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTCTTEEEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhCCCCeEEEEE
Confidence 57999999999999999998765 3465544
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.016 Score=50.99 Aligned_cols=83 Identities=7% Similarity=0.102 Sum_probs=56.2
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|..|++++|++++++...++ ..+. ..+++.+.+ .+..+++.++.
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~~--g~~~~~~~~Dvt~~~~v~~~~~- 76 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRGM--GKEVLGVKADVSKKKDVEEFVR- 76 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHHH-
Confidence 367777 668999999999999999999999998877665442 1111 123333332 36677777777
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 77 ---~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 77 ---RTFETYSRIDVLCNNAG 93 (254)
T ss_dssp ---HHHHHHSCCCEEEECCC
T ss_pred ---HHHHHcCCCCEEEECCc
Confidence 66555555567776553
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.013 Score=52.06 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=31.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.++|.|||+|.+|..-+..|.+.|++|++++.+.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3789999999999999999999999999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0095 Score=55.12 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=62.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC------CHHHhh-cCCCEEEEecCC--hhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD------SPHSLA-SQSDVVFSIVGY--PSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~------~~~~~~-~~~DiIi~~vp~--~~~~~ 120 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|....- +..+.+ ...|+||.|++. +..+.
T Consensus 181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 260 (360)
T 1piw_A 181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 260 (360)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHHH
Confidence 589999999999999998888899999999999888877776754211 222222 368999999954 34333
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. ....+.++..++.+..
T Consensus 261 ~--------~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 261 I--------MPKAMKVGGRIVSISI 277 (360)
T ss_dssp T--------GGGGEEEEEEEEECCC
T ss_pred H--------HHHHhcCCCEEEEecC
Confidence 3 3334456666776654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0053 Score=54.21 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~~~~~~~~~~~~~DiIi~~v 113 (351)
|++|.|.| +|.+|..++..|.+.|++|++.+|++.+....... .+.-..+..++++..|+||.+.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A 72 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLG 72 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence 35677777 69999999999999999999999997654311000 1111112334556777777765
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.017 Score=53.66 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC---CeEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG---YTVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g---~~V~~~ 78 (351)
|+||||+|+|.+|..+.+.|.+.+ ++|+.+
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaI 34 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI 34 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEE
Confidence 469999999999999999998763 566544
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.016 Score=51.60 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=50.1
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCCC
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHPS 127 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~~ 127 (351)
++.|. |.|.+|.++++.|++.|++|++.+|++++.+...+. + .+ ...++.++.+ .+..++++++.
T Consensus 26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-l------~~--~~~~~~~~~~Dv~d~~~v~~~~~--- 93 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG-L------RA--AGHDVDGSSCDVTSTDEVHAAVA--- 93 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-H------HT--TTCCEEEEECCTTCHHHHHHHHH---
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-H------Hh--cCCcEEEEECCCCCHHHHHHHHH---
Confidence 34445 569999999999999999999999998776554332 0 00 0123333333 24455666665
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=.++|+...
T Consensus 94 -~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 94 -AAVERFGPIGILVNSAG 110 (279)
T ss_dssp -HHHHHHCSCCEEEECCC
T ss_pred -HHHHHcCCCcEEEECCC
Confidence 44443334456666554
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.024 Score=48.64 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=33.2
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA 46 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 456666 5699999999999999999999999977665543
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.026 Score=50.04 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=33.8
Q ss_pred CCeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 49 NTRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 49 ~~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
..|+.+| |.|.+|.++++.|++.|++|++.+|+.++.+.+.+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA 70 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3466666 56899999999999999999999999877665543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.027 Score=49.08 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=49.2
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|.| .|.+|.++++.|++.|++|++.+|++++.+.. .-.+| +.+..+++.++.
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~--------------~~~~d-----~~d~~~v~~~~~---- 79 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH--------------SFTIK-----DSGEEEIKSVIE---- 79 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSE--------------EEECS-----CSSHHHHHHHHH----
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccc--------------ceEEE-----eCCHHHHHHHHH----
Confidence 4556665 58999999999999999999999987653210 01122 336677777777
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|++..
T Consensus 80 ~~~~~~g~iD~li~~Ag 96 (251)
T 3orf_A 80 KINSKSIKVDTFVCAAG 96 (251)
T ss_dssp HHHTTTCCEEEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 56554444456776554
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.012 Score=54.52 Aligned_cols=67 Identities=25% Similarity=0.387 Sum_probs=46.4
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCC-CeEEEEeCCcccch-hHH-hcCCcc----cCC---HHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAG-YTVTVFNRTLSKAQ-PLL-DIGAHL----ADS---PHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~-~~~-~~g~~~----~~~---~~~~~~~~DiIi~~vp 114 (351)
.||||.|.|+ |.+|..++..|.+.| ++|++++|++.... .+. ..++.. ..+ ..++++.+|+||-|..
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~ 108 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT 108 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence 3578999985 999999999999999 99999999865432 111 111111 112 3345568899998874
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.048 Score=50.34 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=31.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~ 84 (351)
.||.|||+|.+|+.++..|+.+|. +++++|.+.-.
T Consensus 119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 154 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIE 154 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCc
Confidence 589999999999999999999998 79999987533
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.037 Score=53.92 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~ 66 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ 66 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999764
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.011 Score=54.38 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=24.7
Q ss_pred CCeEEEEccChhhHHHHHHHHH---C-CCeEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN---A-GYTVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~---~-g~~V~~~ 78 (351)
++||+|+|+|.+|..+.+.|.+ . .++|+.+
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai 35 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAI 35 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEE
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEE
Confidence 4699999999999999999987 4 4566544
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.017 Score=52.73 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHC--CCeEEEEeCCc
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNA--GYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~--g~~V~~~dr~~ 82 (351)
||+|.|.| +|.+|..++..|.+. |++|++.+|++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT 40 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 68999997 599999999999988 89999999865
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.034 Score=49.74 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=57.5
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+++.|||-+ -+|..++..|.+.|..|+++... +.++.+.++++|+||.++..+..+.
T Consensus 180 k~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~--------------T~dl~~~~~~ADIvV~A~G~p~~i~-------- 237 (303)
T 4b4u_A 180 KHAVVVGRSAILGKPMAMMLLQANATVTICHSR--------------TQNLPELVKQADIIVGAVGKAELIQ-------- 237 (303)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHHTCSEEEECSCSTTCBC--------
T ss_pred CEEEEEeccccccchHHHHHHhcCCEEEEecCC--------------CCCHHHHhhcCCeEEeccCCCCccc--------
Confidence 689999975 56999999999999999998653 2367788899999999997765332
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.+++++|.++||+..
T Consensus 238 --~d~vk~GavVIDVGi 252 (303)
T 4b4u_A 238 --KDWIKQGAVVVDAGF 252 (303)
T ss_dssp --GGGSCTTCEEEECCC
T ss_pred --cccccCCCEEEEece
Confidence 135679999999874
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.016 Score=52.16 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=42.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc------CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||||.|.|+ |.+|..++..|.+.|+.|.+..++....+.+... .+.- .+..++++.+|+||-+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCC
Confidence 578999975 9999999999999995555545554333222111 1222 456677788999998773
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.033 Score=43.82 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhcCCcccC--CHHHhhc--CCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDIGAHLAD--SPHSLAS--QSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~g~~~~~--~~~~~~~--~~DiIi~~vp~ 115 (351)
..++.|||+|..|..++..+.+. |++|+ ++|.+++..... -.|+.+.. ++.+.+. ..|.|++|+|.
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~-i~g~pV~g~~~l~~~~~~~~id~viia~~~ 75 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTT-MQGITIYRPKYLERLIKKHCISTVLLAVPS 75 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCE-ETTEEEECGGGHHHHHHHHTCCEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCE-ecCeEEECHHHHHHHHHHCCCCEEEEeCCC
Confidence 46899999999999999999875 78766 446665432111 12444433 3334332 57788888853
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.019 Score=52.68 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=46.5
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcc----cCC---HHHhhcC--CCEEEEec
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHL----ADS---PHSLASQ--SDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~----~~~---~~~~~~~--~DiIi~~v 113 (351)
+|+|.|.| +|.+|..++..|.+.|++|++++|+++....+... ++.. ..+ ..++++. +|+||.|.
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 88 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMA 88 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECC
Confidence 37899997 59999999999999999999999987665443321 2211 112 2334443 79999887
Q ss_pred C
Q 018694 114 G 114 (351)
Q Consensus 114 p 114 (351)
.
T Consensus 89 ~ 89 (357)
T 1rkx_A 89 A 89 (357)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.02 Score=52.16 Aligned_cols=67 Identities=21% Similarity=0.376 Sum_probs=45.5
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCC-------CeEEEEeCCcccchhHHhc-------CCcccCCHHHhh-cCCCEEEE
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAG-------YTVTVFNRTLSKAQPLLDI-------GAHLADSPHSLA-SQSDVVFS 111 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g-------~~V~~~dr~~~~~~~~~~~-------g~~~~~~~~~~~-~~~DiIi~ 111 (351)
.+|+|.|.| +|.+|..++..|.+.| ++|++.+|+++........ .+.-..+.++++ ..+|+||-
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 92 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDVIFH 92 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCSEEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCCEEEE
Confidence 457899997 6999999999999999 8999999986543210000 111122334455 37898888
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+..
T Consensus 93 ~A~ 95 (342)
T 2hrz_A 93 LAA 95 (342)
T ss_dssp CCC
T ss_pred CCc
Confidence 874
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.051 Score=47.35 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=50.8
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
++.|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+. ..+.. ..+.++..-+ .+...+++++.
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-- 84 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASH-------INEETGRQPQWFILDLLTCTSENCQQLAQ-- 84 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHHSCCCEEEECCTTTCCHHHHHHHHH--
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhhcCCCceEEEEecccCCHHHHHHHHH--
Confidence 45555 458999999999999999999999998776554332 11111 1222222222 24556666666
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.....+=+++|+...
T Consensus 85 --~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 85 --RIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp --HHHHHCSCCSEEEECCC
T ss_pred --HHHHhCCCCCEEEECCc
Confidence 55444444456666554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.023 Score=50.12 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=32.0
Q ss_pred eEEEE-c-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 51 RIGWI-G-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 51 kI~iI-G-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
|+.+| | .|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 45 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIA 45 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 44444 5 589999999999999999999999987765544
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.016 Score=53.69 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc---ccchhHHhcCCcccC--CHHHhh----cCCCEEEEecCChhHH-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL---SKAQPLLDIGAHLAD--SPHSLA----SQSDVVFSIVGYPSDV- 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~---~~~~~~~~~g~~~~~--~~~~~~----~~~DiIi~~vp~~~~~- 119 (351)
.+|.|+|+|.+|...++.+...|.+|++.++++ ++.+.+++.|....+ +..+.+ ...|+||.|++.+..+
T Consensus 182 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 261 (366)
T 2cdc_A 182 RKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNIL 261 (366)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 589999999999999999998999999999998 777666665654331 111111 3478888888554455
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
...+. .+ .++..++.++.
T Consensus 262 ~~~~~----~l----~~~G~iv~~g~ 279 (366)
T 2cdc_A 262 GNVIP----LL----GRNGVLGLFGF 279 (366)
T ss_dssp HHHGG----GE----EEEEEEEECSC
T ss_pred HHHHH----HH----hcCCEEEEEec
Confidence 55554 22 34455555543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.023 Score=52.67 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-----CCHHHhhc-----CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLAS-----QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~~-----~~DiIi~~vp~~~~ 118 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.... .+..+.+. ..|+||-|+..+..
T Consensus 192 ~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~ 271 (371)
T 1f8f_A 192 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEI 271 (371)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHH
Confidence 589999999999999998888888 69999999988877776664321 12222111 36777777744444
Q ss_pred HHHHhh
Q 018694 119 VRHVLL 124 (351)
Q Consensus 119 ~~~v~~ 124 (351)
+...+.
T Consensus 272 ~~~~~~ 277 (371)
T 1f8f_A 272 LKQGVD 277 (371)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.40 E-value=0.024 Score=50.99 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=52.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCC------HHHhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADS------PHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~------~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+++.|....-+ ..+.+...|++|. ++. ..+...
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~~ 204 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVEES 204 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHHHH
Confidence 58999998 99999999999999999999999998888777666532211 1122246788888 743 445544
Q ss_pred hh
Q 018694 123 LL 124 (351)
Q Consensus 123 ~~ 124 (351)
+.
T Consensus 205 ~~ 206 (302)
T 1iz0_A 205 LG 206 (302)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.025 Score=49.58 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=33.4
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
+++.|.| .|.+|.++++.|++.|++|++.+|+.++.+...+
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA 50 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3466665 5999999999999999999999999877665443
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0096 Score=52.82 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=42.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp 114 (351)
|||.|.| +|.+|..++..|.+.|++|++.+|.+.. +.-..+..++++ .+|+||.|..
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D--------~~d~~~~~~~~~~~~~d~vi~~a~ 65 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLD--------ITNISQVQQVVQEIRPHIIIHCAA 65 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSC--------TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccC--------CCCHHHHHHHHHhcCCCEEEECCc
Confidence 4899998 5999999999999999999999995322 111223344454 5899998863
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.037 Score=49.58 Aligned_cols=84 Identities=14% Similarity=0.155 Sum_probs=51.4
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
.|+.+| |.|.+|.++++.|++.|++|++.+|++++.+...+. +... ...++.++.+ .+..++++++.
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-l~~~-------~~~~~~~~~~Dv~d~~~v~~~~~- 111 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAE-LGEL-------GAGNVIGVRLDVSDPGSCADAAR- 111 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-HTTS-------SSSCEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhh-------CCCcEEEEEEeCCCHHHHHHHHH-
Confidence 355555 568999999999999999999999998876655432 0000 0123333333 24455666665
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=.++|+...
T Consensus 112 ---~~~~~~g~iD~lvnnAg 128 (293)
T 3rih_A 112 ---TVVDAFGALDVVCANAG 128 (293)
T ss_dssp ---HHHHHHSCCCEEEECCC
T ss_pred ---HHHHHcCCCCEEEECCC
Confidence 44444444456666544
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.017 Score=52.77 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~ 78 (351)
|+||||+|.|.+|..+.+.|.+.. .+|+.+
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i 31 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAI 31 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCeEEEEE
Confidence 469999999999999999988753 355544
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.043 Score=49.96 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=37.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|.|+ |.+|..+++.+...|.+|++.++++++.+.+.+.|.
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF 191 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence 57999998 999999999999999999999999888776655453
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.028 Score=52.37 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=38.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|+|+|.+|...++.+...| .+|++.++++++.+.+++.|.
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 241 (380)
T 1vj0_A 197 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence 58999999999999999988899 699999999988887776664
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.01 Score=55.05 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=31.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
++|.|.|+ |.+|..++..|.+.|++|++++|+++.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~ 64 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN 64 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence 68999986 999999999999999999999998654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.29 E-value=0.034 Score=48.42 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=50.9
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+.+| |.|.+|.++++.|++.|++|++.+|+++..+.+.+. + -.....+-.=+.+..++++++.
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~---------~~~~~~~~~Dv~d~~~v~~~~~---- 75 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY-L---------GDNGKGMALNVTNPESIEAVLK---- 75 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-H---------GGGEEEEECCTTCHHHHHHHHH----
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h---------cccceEEEEeCCCHHHHHHHHH----
Confidence 45555 568999999999999999999999998776554432 0 0011111111235566666666
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 76 ~~~~~~g~iD~lv~nAg 92 (248)
T 3op4_A 76 AITDEFGGVDILVNNAG 92 (248)
T ss_dssp HHHHHHCCCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 55544444557776654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.014 Score=53.23 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=29.8
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
||||.|.| +|.+|..+++.|.+.|++|++.+|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence 57999997 6999999999999999999999885
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.038 Score=50.78 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=32.1
Q ss_pred CCCCeEEEEc-cChhhHHHHHHHHH--CCCeEEEEeCCcc
Q 018694 47 PTNTRIGWIG-TGVMGRSMCAHLLN--AGYTVTVFNRTLS 83 (351)
Q Consensus 47 ~~~~kI~iIG-~G~mG~~ia~~L~~--~g~~V~~~dr~~~ 83 (351)
..+|+|.|.| +|.+|..++..|.+ .|++|++.+|++.
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~ 47 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS 47 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence 3457899995 59999999999999 9999999999754
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.019 Score=47.14 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|.+|.|||.|..|..+|..|.+.|.+|+++++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4689999999999999999999999999999876
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.044 Score=48.43 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=51.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.|+.+| |.|.+|.++++.|++.|++|++.+|+++..+.+.+. ..+.-.+...+..=+.+..+++.++.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~~--- 97 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA-------FKQAGLEGRGAVLNVNDATAVDALVE--- 97 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHHTCCCEEEECCTTCHHHHHHHHH---
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEEeCCCHHHHHHHHH---
Confidence 356666 569999999999999999999999998766554332 11111122222222334556666665
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=.++|+...
T Consensus 98 -~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 98 -STLKEFGALNVLVNNAG 114 (270)
T ss_dssp -HHHHHHSCCCEEEECCC
T ss_pred -HHHHHcCCCCEEEECCC
Confidence 44443344456666553
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.035 Score=49.12 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=33.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
++|.|.| .|.+|.++++.|++.|++|++.+|+.++.+.+.+
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA 47 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4455554 5999999999999999999999999877666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 351 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 4e-36 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 4e-33 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 9e-28 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 1e-27 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 7e-26 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 2e-24 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 5e-23 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 8e-23 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 3e-19 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 1e-18 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 9e-14 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 3e-11 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 4e-08 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 7e-08 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 2e-07 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 8e-07 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 8e-06 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 5e-05 | |
| d1gpja2 | 159 | c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle | 8e-05 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 1e-04 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 8e-04 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 0.001 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 0.002 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 0.003 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 0.003 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 126 bits (318), Expect = 4e-36
Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+MG+ M +LL AGY++ V +R ++ GA A + ++A Q DV+
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+++ V+ V L +G + G +PG +++DM++ P + E+S A +K +DAPV
Sbjct: 62 TMLPNSPHVKEVALGE-NGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMG 210
SGG+ A GTL++ GGD+++ K L M V + G
Sbjct: 121 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 118 bits (297), Expect = 4e-33
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
+I +IG G MG M +LL AGY + VF+ S L+ GA A S +DVV
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
S++ V + L G L+ + PG ++++ +T P+ A ++ AAA + + +DAP
Sbjct: 62 ISMLPASQHVEGLYLDDD-GLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP 120
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMG 210
VSGG GA GTL GGD ++K PLF MG+ + + G
Sbjct: 121 VSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 104 bits (260), Expect = 9e-28
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++ +IG G MG M HL T+ V+NRT KA + ++ +
Sbjct: 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGS-----EAVPLERVAEA 55
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
++ + + LR G VD T+ EP + L+ K + +DAPV
Sbjct: 56 RVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPV 115
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMG 210
SGG GA+ GTL + GG E V+++ P A KV ++G
Sbjct: 116 SGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVG 155
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 103 bits (257), Expect = 1e-27
Identities = 46/129 (35%), Positives = 67/129 (51%)
Query: 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRIL 272
G G KLANQ+ +A + + E + A KAG+N +L AI G AGS LD ++
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 273 KRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILA 332
R+F+PGF ++ +KDL L +G LP A ++ +L+A G GN AL
Sbjct: 63 DRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACY 122
Query: 333 LERLNNVRL 341
E+L V +
Sbjct: 123 YEKLAKVEV 131
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 98.6 bits (245), Expect = 7e-26
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 212 SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRI 271
G GQ AK+ N +A M+G E M GL ++ + + G+ +L+++
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 272 -------LKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNL 324
RD+ GF KDLG+ + Q + P +LA LY L G
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 325 GTQALILALE 334
+ +
Sbjct: 122 DFSVVQKLFD 131
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 94.4 bits (234), Expect = 2e-24
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKS-LDLHGSRI 271
G G K N +A + EG++ K G++ E L I+ + S + +L R+
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 272 LKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALIL 331
L R F F + VKDLGI + P L LA+++Y K + +
Sbjct: 62 LTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALR 121
Query: 332 ALERLNNVRL 341
LER V +
Sbjct: 122 LLERWGGVEI 131
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 92.4 bits (228), Expect = 5e-23
Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 13/179 (7%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDV 108
+ +G +G GVMG ++ ++ G+ V VFNRT SK++ + A + + A ++
Sbjct: 1 SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETME 60
Query: 109 VFSIVGYPSDVRHVLLHPSS-------GALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161
F+ +L+ + G I+VD + + +
Sbjct: 61 AFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAA 120
Query: 162 NCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-----VNYMGGSGKG 215
+ +SGG+ GA+ G F GG SV +++ P+ + +G G
Sbjct: 121 GLRFLGMGISGGEEGARKGPA-FFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 91.1 bits (225), Expect = 8e-23
Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 12/160 (7%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
R+G+IG G + +++ + L + G V S + + ++ VV
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
S V + +G GI VD+ P S+ +DA +
Sbjct: 62 SAVTPGVALGAAR-------RAGRHVRGIYVDINNISPETVRMASSLIEKGGF--VDAAI 112
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMG 210
G R I +G D KLN + G
Sbjct: 113 MGSVRRKGADIRIIASGRDAEEFMKLNR---YGLNIEVRG 149
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 82.0 bits (201), Expect = 3e-19
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 15/173 (8%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLASQ 105
I IG VMG+++ ++ + G+ V FNRT+SK L A S + S+
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63
Query: 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165
I+ + V + L G II+D SE K
Sbjct: 64 LKKPRRIILLVKAGQAVDNFIEK-LVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122
Query: 166 IDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK--------VNYMG 210
+ + VSGG+ GA+ G ++ GG++ + +F + +++G
Sbjct: 123 VGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVG 174
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 79.3 bits (194), Expect = 1e-18
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
+ ++GTG + R L + + +R++ +A+ L ++ A + + VVF
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171
IV ++V + L+SE+ + + + S
Sbjct: 62 IVPDRYIKTVANHLN--------LGDAVLVHCS---GFLSSEIFKKSGRASIHPNFSFSS 110
Query: 172 GGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK 205
+ GDE + + + +
Sbjct: 111 LEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 144
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 66.0 bits (160), Expect = 9e-14
Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 24/164 (14%)
Query: 45 VCPTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA 103
+ +I +G G +G +L +GY +++ +R + A + +
Sbjct: 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPIN 64
Query: 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163
+ + + Y ++ D+T+ + +++ +
Sbjct: 65 LTLETIERLKPYL------------------TENMLLADLTSVKREPLAKMLEVHTGAVL 106
Query: 164 SA--IDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK 205
+ + G + L + G
Sbjct: 107 GLHPMFGADIASMAKQ---VVVRCDGRFPERYEWLLEQIQIWGA 147
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 60.4 bits (146), Expect = 3e-11
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 90 DIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149
D+G + +D+V + + + ++ + G I+ T +
Sbjct: 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDII----KKFADAIPEGAIVTHACTIPTT 181
Query: 150 LASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNY 208
+++ ++ + I + G K E V KL + + +
Sbjct: 182 KFAKIFKDLGREDLN-ITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAF 239
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 50.1 bits (118), Expect = 4e-08
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 10/156 (6%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+IG IG G M ++ L + + + +L +++ + + A H +
Sbjct: 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170
+ P VL I+ M L+ P
Sbjct: 62 ILGIKPQLFETVLKPL--------HFKQPIISMAAGISL--QRLATFVGQDLPLLRIMPN 111
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKV 206
+ L A + + ++ L G
Sbjct: 112 MNAQILQSSTALTGNALVSQELQARVRDLTDSFGST 147
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 49.4 bits (116), Expect = 7e-08
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 14/163 (8%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+IG +G G++G S+ L G+ + +R A ++
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ-----QSTCEKAVERQLVDEAGQDLSLLQ 56
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA--IDA 168
+ L+ P+ L IV S + +E ++ S +
Sbjct: 57 TAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAG 116
Query: 169 PVSGGDRGAKTG-------TLAIFAGGDESVVQKLNPLFALMG 204
+ G GA+ L D + L + +G
Sbjct: 117 TAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLG 159
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90
+ +G+G + R L ++G VTV RTL A+ L
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA 43
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 46.1 bits (108), Expect = 8e-07
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 11/157 (7%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
+ ++G G M ++ L+ G Y + + NR K + L + DV+
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVL 61
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169
V P D+ +R G +V + S+ + LS P
Sbjct: 62 ILAV-KPQDMEAA--------CKNIRTNGALVLSVAAGLSVGT-LSRYLGGTRRIVRVMP 111
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKV 206
+ G G + A E+ + + + +G
Sbjct: 112 NTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT 148
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 43.7 bits (102), Expect = 8e-06
Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDV 108
+ +G G G + A+L G +V ++ + + + D GA +A+ P +
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPD 60
Query: 109 VFSIVGYP--SDVRHVLLHPSSGALSG--------LRPGGIIVDMTTSEPS 149
+ + D +L+ + + + G +I+ +
Sbjct: 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGG 111
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 5e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81
+ IG G+MG + G+TV + ++T
Sbjct: 6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 36
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 40.5 bits (94), Expect = 8e-05
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPL---LDIGAHLADSPHSLAS 104
+ + +G G MG+++ L++ G V V NRT +A L L A D +
Sbjct: 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA 83
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDM 143
+SDVV S P V HV + R +I+D+
Sbjct: 84 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI 122
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNR 80
+ +G G+MG + + G + + +
Sbjct: 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDI 35
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 8e-04
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA-------HLADSPHSLASQSDV 108
TG G + A + AGY VTV R S+ A A + D
Sbjct: 11 ATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDA 70
Query: 109 VFSIVGYPSDVRH 121
V ++G +D+
Sbjct: 71 VIVLLGTRNDLSP 83
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 38.3 bits (87), Expect = 0.001
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 43 DPVCPTNTRI---GWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSP 99
+ V P + + G G + + LL GY V R+ SK L D+
Sbjct: 5 NAVLPEGSLVLVTG--ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ----KRWDAK 58
Query: 100 HSLASQSDVVFSI 112
+ ++ VV +
Sbjct: 59 YPGRFETAVVEDM 71
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 37.1 bits (84), Expect = 0.002
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87
GTG +G+ + ++ G+ V R +
Sbjct: 11 GTGYIGKRIVNASISLGHPTYVLFRPEVVSNI 42
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.2 bits (82), Expect = 0.003
Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 19/180 (10%)
Query: 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
R+ + GTG +G+ + L G+ + V +R KA+ +A +++
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 110 FSIVGYPSDVRHVLLHPSSGA-----------------LSGLRPGGIIVDMTTSEPSLAS 152
+ +S G ++ +A
Sbjct: 62 AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121
Query: 153 ELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGG 211
L + I A + + DES ++ + + G + G
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 36.3 bits (82), Expect = 0.003
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHS 101
PT RI +G + G + L +AG V V+ R QPL G + P
Sbjct: 2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYER---SPQPLSGFGTGIVVQPEL 53
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.96 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.96 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.91 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.89 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.89 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.87 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.84 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.83 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.82 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.78 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.76 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.76 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.75 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.7 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.68 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.59 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.55 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.52 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.51 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.45 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.42 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.41 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.16 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.13 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.08 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.04 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.04 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.94 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.92 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.9 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.9 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.84 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.73 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.64 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.63 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.63 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.6 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.59 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.55 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.51 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.49 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.49 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.49 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.47 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.45 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.44 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.42 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.38 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.38 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.31 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.3 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.3 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.29 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.29 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.29 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.29 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.28 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.28 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.24 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.24 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.21 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.2 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.18 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.16 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.09 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.08 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 98.08 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.06 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.05 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.05 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 98.04 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.03 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.03 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 98.01 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.98 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.95 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.93 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.9 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.89 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.86 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.86 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.86 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.86 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.85 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.8 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.73 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.73 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.67 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.66 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.66 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.65 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.64 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.62 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.6 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.59 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.59 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 97.58 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.58 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.58 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.57 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.55 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 97.52 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.52 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.5 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.48 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.48 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.41 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.35 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.33 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.32 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.27 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.24 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.23 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.22 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.16 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.12 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.07 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.06 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.06 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.95 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.92 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.92 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.9 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.89 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.89 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.87 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.85 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.85 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.83 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.8 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.78 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.73 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.67 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.67 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.64 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.53 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.49 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.49 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.42 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.4 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.4 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.39 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.37 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.36 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.32 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.27 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.25 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.23 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.23 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.22 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 96.22 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.19 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.18 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.17 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.15 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.15 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.11 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.07 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.05 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.04 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.02 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.99 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.97 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.95 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.94 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.94 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.91 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.88 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.87 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.85 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.85 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.83 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.83 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.8 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.78 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.77 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.75 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.74 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.72 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.71 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.71 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 95.7 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.69 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.65 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.64 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 95.63 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.62 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.61 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 95.58 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.57 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.57 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.56 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 95.56 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.54 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 95.52 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.5 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.46 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 95.46 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.44 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.44 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 95.43 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.41 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 95.41 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.31 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.31 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.3 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.29 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 95.26 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.23 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.22 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.2 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.19 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 95.16 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.13 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.07 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.06 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.04 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 95.02 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.02 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.0 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.99 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 94.93 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.91 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.89 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.86 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.85 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.76 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.76 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 94.67 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.65 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.64 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.53 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.53 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 94.5 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.49 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.49 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 94.42 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 94.39 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.32 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.31 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.28 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.26 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.24 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.21 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.13 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 94.06 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 93.99 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 93.97 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 93.92 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 93.84 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.8 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.77 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.72 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 93.58 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 93.54 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 93.48 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.44 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.42 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 93.36 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.29 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.27 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.22 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.22 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.18 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 93.16 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.08 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.96 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.72 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.69 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 92.57 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.57 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.46 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.44 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 92.42 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 92.39 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.18 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.13 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.08 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.08 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.06 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.03 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 91.92 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 91.87 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.76 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 91.41 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.22 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 91.21 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 91.17 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 91.11 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 91.09 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 91.08 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 91.04 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 90.96 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 90.69 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 90.64 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.6 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 90.45 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 90.41 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 90.25 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 90.07 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 89.99 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.84 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.78 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 89.67 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 89.65 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.65 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 89.6 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 89.52 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.21 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.11 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 88.76 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.7 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 88.59 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 88.44 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 88.23 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 88.14 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 88.13 | |
| d1t0ia_ | 185 | Hypothetical protein Ylr011wp {Baker's yeast (Sacc | 87.39 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.32 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 87.31 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 87.3 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.23 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 87.14 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.09 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.91 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 86.9 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 86.74 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 86.39 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 86.24 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.17 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.78 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 85.72 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 85.56 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 85.53 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 85.45 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 85.4 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 85.33 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 85.17 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.17 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 85.15 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 84.87 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.82 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 84.77 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 84.7 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.4 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 84.36 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 84.29 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 84.13 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 84.0 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 83.75 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 83.7 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 83.49 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.43 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 83.23 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 83.13 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 82.89 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 82.86 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 82.74 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 82.68 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.66 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 82.66 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 82.62 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 82.57 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 82.56 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 82.34 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 82.05 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 81.92 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 81.6 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 81.52 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.35 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 81.31 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 81.26 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 81.24 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 81.14 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 80.62 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 80.53 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 80.46 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 80.41 | |
| d1bg6a1 | 172 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 80.39 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 80.02 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1e-29 Score=210.62 Aligned_cols=160 Identities=34% Similarity=0.632 Sum_probs=151.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
|||||||+|.||..||++|.++||+|++|||++++.+.+.+.+.....++.++++++|+||+|||++.++++++...+ .
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~-~ 79 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN-G 79 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT-C
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCc-c
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999996444 6
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
+.+.+.++++|||++|+.|...+++.+.+..+++.|+++|+++++..+..|.+.++++|+++.+++++++|+.++. ++|
T Consensus 80 ~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~ 159 (161)
T d1vpda2 80 IIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVH 159 (161)
T ss_dssp HHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEE
Confidence 7788899999999999999999999999999999999999999999999999999999999999999999999998 887
Q ss_pred cC
Q 018694 209 MG 210 (351)
Q Consensus 209 ~g 210 (351)
+|
T Consensus 160 ~G 161 (161)
T d1vpda2 160 TG 161 (161)
T ss_dssp EE
T ss_pred CC
Confidence 65
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=1.3e-28 Score=204.15 Aligned_cols=161 Identities=36% Similarity=0.612 Sum_probs=150.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+||||||+|.||.+||++|.++||+|.+|||++++.+.+...+.....++.+.+.++|+|++|+|.+...++++....
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~- 79 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD- 79 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTT-
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999987443
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
.+...+.++++|||++++.|..+.++.+.+.++++.|+++|++|++..+..|++.++++|+++.+++++++|+.++. ++
T Consensus 80 ~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~ 159 (162)
T d3cuma2 80 GLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIF 159 (162)
T ss_dssp CHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred cccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccE
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred EcC
Q 018694 208 YMG 210 (351)
Q Consensus 208 ~~g 210 (351)
|+|
T Consensus 160 ~~G 162 (162)
T d3cuma2 160 HAG 162 (162)
T ss_dssp EEE
T ss_pred ECc
Confidence 765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.91 E-value=5.1e-25 Score=184.76 Aligned_cols=151 Identities=25% Similarity=0.367 Sum_probs=137.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC--------cccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA--------HLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~--------~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
.+|||||+|.||..||++|.++||+|++|||++++.+.+.+++. ....++.+.+..+|.+|+|++....+.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~ 82 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence 47999999999999999999999999999999999999987743 2234455667889999999999999999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
+.. ++.+.+.+++++|++++..|....++.+.+...++.|+++|++|++..+..|. .++++|+++.+++++++|+
T Consensus 83 v~~----~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~ 157 (176)
T d2pgda2 83 FIE----KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQ 157 (176)
T ss_dssp HHH----HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHH
T ss_pred HHH----HHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHH
Confidence 998 89889999999999999999999999999999999999999999999999888 7889999999999999999
Q ss_pred hhCc
Q 018694 202 LMGK 205 (351)
Q Consensus 202 ~~g~ 205 (351)
.++.
T Consensus 158 ~~~~ 161 (176)
T d2pgda2 158 GIAA 161 (176)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 9987
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.89 E-value=7.8e-24 Score=177.80 Aligned_cols=160 Identities=22% Similarity=0.379 Sum_probs=140.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--------cCCHHH---hhcCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--------ADSPHS---LASQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--------~~~~~~---~~~~~DiIi~~vp~~~~ 118 (351)
|||||||+|.||..||++|.++||+|++|||++++.+.+.+.+... ..+.++ .+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 7999999999999999999999999999999999999998775321 223333 34578899999988888
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHH
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNP 198 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ 198 (351)
++.++. .+...+.++++++++++..+..+.++.+.+..+++.|+++|+++++..+..|. .++++|+++.++++++
T Consensus 82 ~~~~~~----~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~p 156 (178)
T d1pgja2 82 TDSTIE----QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRP 156 (178)
T ss_dssp HHHHHH----HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHH
T ss_pred hhhhhh----hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHH
Confidence 888888 88888899999999999999999999999998999999999999999998887 7889999999999999
Q ss_pred HHHhhCc-eE----EcCCccH
Q 018694 199 LFALMGK-VN----YMGGSGK 214 (351)
Q Consensus 199 ll~~~g~-~~----~~g~~g~ 214 (351)
+|+.++. +. |+|..|+
T Consensus 157 il~~~~~~~~~~~~~~g~~G~ 177 (178)
T d1pgja2 157 IVEAAAAKADDGRPCVTMNGS 177 (178)
T ss_dssp HHHHHSCBCTTSCBSCCCCCS
T ss_pred HHHHHhccccCCCCccCCCCC
Confidence 9999997 55 7888775
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1e-23 Score=173.23 Aligned_cols=154 Identities=33% Similarity=0.484 Sum_probs=136.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA 130 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i 130 (351)
||||||+|.||..||++|.++|+.+ +|+|++++.+.+.+.+...... .+.+.++|++|+|+|.+..+..... ++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~----~l 75 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVAE----AL 75 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHHH----HH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhhc----cc
Confidence 7999999999999999999998865 6888888777776664444444 4555689999999999999998888 88
Q ss_pred ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEc
Q 018694 131 LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 131 ~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
...+.+++++|+++++.|..++++.+.+.+.++.|+|+|++|++..+..|++.+++||+++.+++++++|+ ++. ++|+
T Consensus 76 ~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~~~v~~~ 154 (156)
T d2cvza2 76 YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHV 154 (156)
T ss_dssp TTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TEEEEEEE
T ss_pred cccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hcCcCEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999995 666 8888
Q ss_pred CC
Q 018694 210 GG 211 (351)
Q Consensus 210 g~ 211 (351)
|+
T Consensus 155 GP 156 (156)
T d2cvza2 155 GP 156 (156)
T ss_dssp ES
T ss_pred Cc
Confidence 74
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=1.7e-21 Score=155.15 Aligned_cols=133 Identities=35% Similarity=0.556 Sum_probs=129.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHH
Q 018694 211 GSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLG 290 (351)
Q Consensus 211 ~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~ 290 (351)
+.|++...|+++|.+...+..+++|++.++++.|++++++++++..+...++.++.+.+.+.+++|.|+|+++.+.||++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcccc
Q 018694 291 ICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDN 343 (351)
Q Consensus 291 ~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~ 343 (351)
++.+++++.|+|+|+.+.+.++++.+.+.|+++.|+++++++|++..|+++.+
T Consensus 81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~~~~~~~~~ 133 (133)
T d1vpda1 81 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVTR 133 (133)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCcCC
Confidence 99999999999999999999999999999999999999999999999998863
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.86 E-value=1.5e-21 Score=159.33 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=119.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
|||||||+|+||.+||++|.++||+|++|++++.+...+...+.....+++|+++++|+||+|||+ .+..+++. +
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~-~~~~~~~~----~ 75 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTP-GVALGAAR----R 75 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCG-GGHHHHHH----H
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecC-chHHHHHH----h
Confidence 799999999999999999999999999999988777777666777788899999999999999955 45555665 5
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
....+ ++++|++++..|...+++++.++. ..|+++|+++++.....+...++.|++.+.++ .|+.+|. +.+
T Consensus 76 ~~~~~--~~~~id~st~~p~~~~~l~~~~~~--~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~~i~~ 147 (152)
T d1i36a2 76 AGRHV--RGIYVDINNISPETVRMASSLIEK--GGFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEV 147 (152)
T ss_dssp HHTTC--CSEEEECSCCCHHHHHHHHHHCSS--SEEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTCEEEE
T ss_pred hcccC--CceeeccCcCCHHHHHHHHHHHhc--cCCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCCeeeE
Confidence 55443 678999999999999999988864 45999999999888777765544444544333 3677887 777
Q ss_pred cCC
Q 018694 209 MGG 211 (351)
Q Consensus 209 ~g~ 211 (351)
+|+
T Consensus 148 ~G~ 150 (152)
T d1i36a2 148 RGR 150 (152)
T ss_dssp CSS
T ss_pred cCC
Confidence 775
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.84 E-value=2.9e-20 Score=153.71 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=117.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC-cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA-HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~-~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|||+|||+|.||+++|+.|.++|++|++|||++++.+.+.+.|. ....+..+.++++|+||+|+ ++..+++++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav-p~~~~~~vl~---- 75 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT-PIQLILPTLE---- 75 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS-CHHHHHHHHH----
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC-cHhhhhhhhh----
Confidence 79999999999999999999999999999999998888888764 23445556789999999999 7778999999
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcC-CCcEEeccCCCCchhhc----cCceeEEe---cCCHHHHHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSK-NCSAIDAPVSGGDRGAK----TGTLAIFA---GGDESVVQKLNPLF 200 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~-~~~~v~~pv~~~~~~~~----~g~~~~~~---~g~~~~~~~v~~ll 200 (351)
++.+.+.++++|+++++........+.+..... +.+.+.+|...++.... .+...+++ +++++..+.++++|
T Consensus 76 ~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~ 155 (165)
T d2f1ka2 76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVL 155 (165)
T ss_dssp HHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999988776666655544311 22333334333332221 23334443 56899999999999
Q ss_pred HhhCc-eEEc
Q 018694 201 ALMGK-VNYM 209 (351)
Q Consensus 201 ~~~g~-~~~~ 209 (351)
+.+|. +++|
T Consensus 156 ~~lG~~v~~c 165 (165)
T d2f1ka2 156 EPLGVKIYLC 165 (165)
T ss_dssp GGGTCEEEEC
T ss_pred HHhCCEEEeC
Confidence 99998 5543
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=3.6e-20 Score=147.24 Aligned_cols=130 Identities=26% Similarity=0.326 Sum_probs=124.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-hcccCCCCCccchhhHHHHHH
Q 018694 212 SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-RILKRDFEPGFFVNHFVKDLG 290 (351)
Q Consensus 212 ~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~~ 290 (351)
.|++...|+++|.+...+..+++|++.++++.|++++++++++..+.+.++.+..+.+ .+..++|.++|+++.+.||++
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~ 80 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG 80 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence 4889999999999999999999999999999999999999999999999999888876 578899999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcc
Q 018694 291 ICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341 (351)
Q Consensus 291 ~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 341 (351)
++.+.+++.|+|+|+.+.+.++++.+.+.|+++.|++++++.|++.+|+++
T Consensus 81 l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~~g~~~ 131 (132)
T d2cvza1 81 IAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 131 (132)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHTSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999886
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.82 E-value=8.5e-20 Score=148.74 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=118.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|||||||+|+||.+|+..|.++|++|++|+|++++.+.+.++ |+..+.+++++++++|+||+|| +|+++++++.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilav-kp~~~~~vl~---- 75 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGI-KPQLFETVLK---- 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECS-CGGGHHHHHT----
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeec-chHhHHHHhh----
Confidence 799999999999999999999999999999999998888655 8899999999999999999999 8899998887
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK 205 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~ 205 (351)
.+ .++++++++.++.. .+.+.+.+. .+..++++ |+.+...+ .+...+..+. +++..+.++++|+.+|.
T Consensus 76 ~l----~~~~~iis~~agi~--~~~l~~~l~-~~~~ivr~mPN~~~~v~--~g~~~~~~~~~~~~~~~~~v~~l~~~~G~ 146 (152)
T d2ahra2 76 PL----HFKQPIISMAAGIS--LQRLATFVG-QDLPLLRIMPNMNAQIL--QSSTALTGNALVSQELQARVRDLTDSFGS 146 (152)
T ss_dssp TS----CCCSCEEECCTTCC--HHHHHHHHC-TTSCEEEEECCGGGGGT--CEEEEEEECTTCCHHHHHHHHHHHHTTEE
T ss_pred hc----ccceeEeccccccc--HHHHHhhhc-ccccchhhccchhhhcC--ccceEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence 54 56889999988744 346666664 35667776 76655443 2333333333 68899999999999999
Q ss_pred eEEcC
Q 018694 206 VNYMG 210 (351)
Q Consensus 206 ~~~~g 210 (351)
++++.
T Consensus 147 ~~~v~ 151 (152)
T d2ahra2 147 TFDIS 151 (152)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 77664
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=1.3e-18 Score=138.55 Aligned_cols=125 Identities=25% Similarity=0.381 Sum_probs=117.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhh-------hhcccCCCCCccchh
Q 018694 211 GSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG-------SRILKRDFEPGFFVN 283 (351)
Q Consensus 211 ~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~ 283 (351)
+.|++..+|+++|.+...+..++.|++.++++.|++++.++++++.+.++++.++... ..+.++++.++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 3689999999999999999999999999999999999999999999999999987654 346778899999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 018694 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335 (351)
Q Consensus 284 ~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~ 335 (351)
.+.||++++++++++.|+|+|+++.+.++++.+.++|+++.|++++++.|++
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999875
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.76 E-value=8.6e-18 Score=136.71 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=118.9
Q ss_pred CCCCCCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 44 PVCPTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 44 ~~~~~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+++.|+||+||| +|.||.+||++|.++||+|.+||+++... .++.+.++|++++|+ +...+..+
T Consensus 4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~-~~~~~~~v 69 (152)
T d2pv7a2 4 TINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSV-PINLTLET 69 (152)
T ss_dssp CSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECS-CGGGHHHH
T ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhcccccccc-chhhheee
Confidence 3667889999999 99999999999999999999999986542 345567899999999 67778888
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe-ccCCCCchhhccCceeEEe-cCCHHHHHHHHHHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID-APVSGGDRGAKTGTLAIFA-GGDESVVQKLNPLF 200 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~-~pv~~~~~~~~~g~~~~~~-~g~~~~~~~v~~ll 200 (351)
+. ++.+.+.++++++|+++..+...+.+.+... ..|+. .|++|+......+...+++ +++++.++++.++|
T Consensus 70 ~~----~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~---~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll 142 (152)
T d2pv7a2 70 IE----RLKPYLTENMLLADLTSVKREPLAKMLEVHT---GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQI 142 (152)
T ss_dssp HH----HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHH
T ss_pred ee----cccccccCCceEEEecccCHHHHHHHHHHcc---CCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHH
Confidence 88 8889999999999999998888877776543 35664 4999988877777766655 55888899999999
Q ss_pred HhhCc-eEE
Q 018694 201 ALMGK-VNY 208 (351)
Q Consensus 201 ~~~g~-~~~ 208 (351)
+.+|. ++.
T Consensus 143 ~~~Ga~v~e 151 (152)
T d2pv7a2 143 QIWGAKIYQ 151 (152)
T ss_dssp HHTTCEEEE
T ss_pred HHhCCEEEe
Confidence 99998 554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.76 E-value=2.4e-18 Score=140.03 Aligned_cols=146 Identities=18% Similarity=0.312 Sum_probs=114.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+|||+|+||.+|++.|.++| ++|.+|||++++.+.+.++ |+...++.++ +.++|+||+|| +|+++++++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lav-kP~~~~~v~~--- 75 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAV-KPQDMEAACK--- 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECS-CHHHHHHHHT---
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEec-CHHHHHHhHH---
Confidence 79999999999999999998877 8999999999999888776 7777777666 56799999999 8999999998
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMG 204 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g 204 (351)
++.+ .++++|++.++.+ .+.+.+.+. ....++++ |+.+...+ .|...+..+. +++..+.++++|+.+|
T Consensus 76 -~l~~---~~~~viS~~ag~~--~~~l~~~l~-~~~~iir~mpn~p~~~~--~g~t~~~~~~~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 76 -NIRT---NGALVLSVAAGLS--VGTLSRYLG-GTRRIVRVMPNTPGKIG--LGVSGMYAEAEVSETDRRIADRIMKSVG 146 (152)
T ss_dssp -TCCC---TTCEEEECCTTCC--HHHHHHHTT-SCCCEEEEECCGGGGGT--CEEEEEECCTTSCHHHHHHHHHHHHTTE
T ss_pred -HHhh---cccEEeecccCCC--HHHHHHHhC-cCcceEeecccchhHhc--CCcEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 7653 5789999988765 346777664 23456665 66655443 3443343333 6888899999999999
Q ss_pred ceEEc
Q 018694 205 KVNYM 209 (351)
Q Consensus 205 ~~~~~ 209 (351)
.++++
T Consensus 147 ~~~~v 151 (152)
T d1yqga2 147 LTVWL 151 (152)
T ss_dssp EEEEC
T ss_pred CEEEe
Confidence 96665
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.4e-19 Score=147.74 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=111.8
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcc
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGAL 131 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~ 131 (351)
|||||+|+||.+|++.|.+.++.+.+|+|++++.+.+.+.+.....+++++++++|+||+|| ++.++.+++. ++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v-~d~~i~~v~~----~l~ 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIV-PDRYIKTVAN----HLN 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECS-CTTTHHHHHT----TTC
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEec-cchhhhHHHh----hhc
Confidence 79999999999999999775555679999999999999987767778899999999999999 6788898988 664
Q ss_pred cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcC
Q 018694 132 SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMG 210 (351)
Q Consensus 132 ~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g 210 (351)
.+++++++++++.+.. .+ +.....+.+++.++..+.......+...++.+||++.++.++++|+.+|. +++++
T Consensus 77 ---~~~~ivi~~s~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~ 150 (153)
T d2i76a2 77 ---LGDAVLVHCSGFLSSE--IF-KKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 150 (153)
T ss_dssp ---CSSCCEEECCSSSCGG--GG-CSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECC
T ss_pred ---ccceeeeecccchhhh--hh-hhhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeC
Confidence 4789999999876532 22 11222355666667666665555556678888999999999999999996 88776
Q ss_pred C
Q 018694 211 G 211 (351)
Q Consensus 211 ~ 211 (351)
+
T Consensus 151 ~ 151 (153)
T d2i76a2 151 S 151 (153)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=2.8e-16 Score=130.07 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=115.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCCc--ccCCHHHhh-cCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGAH--LADSPHSLA-SQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~~--~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~ 123 (351)
|+||+|||+|.||.++|+.|.+.|+ +|++||++++..+.+.+.+.. ..++.++.. .++|+||+|+ ++..+.+++
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-p~~~~~~vl 79 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-PVRTFREIA 79 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-CHHHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-Cchhhhhhh
Confidence 5689999999999999999999996 789999999988888887652 344444433 4799999999 788888899
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch----hh----ccCceeEEec---CCHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR----GA----KTGTLAIFAG---GDES 191 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~----~~----~~g~~~~~~~---g~~~ 191 (351)
. ++.+++.++++++|+++......+.+.+.+.. +|+.+ |+.|.+. .. ..+..++++. .+++
T Consensus 80 ~----~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~ 152 (171)
T d2g5ca2 80 K----KLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKK 152 (171)
T ss_dssp H----HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHH
T ss_pred h----hhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHH
Confidence 8 88888999999999999888777777776653 45544 6655421 11 2344455543 3888
Q ss_pred HHHHHHHHHHhhCc
Q 018694 192 VVQKLNPLFALMGK 205 (351)
Q Consensus 192 ~~~~v~~ll~~~g~ 205 (351)
..+.++++|+.+|.
T Consensus 153 ~~~~v~~~~~~lG~ 166 (171)
T d2g5ca2 153 RLKLVKRVWEDVGG 166 (171)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999997
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.68 E-value=1.7e-17 Score=139.59 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=120.2
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------CCcccCCHHHhhcCCCEEEEe
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------GAHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~~~~~~~DiIi~~ 112 (351)
..|.||+|||+|+||+++|..|+++||+|++|+|+++.++.+.+. .+.++.+++++++++|+||+|
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia 84 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV 84 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence 346789999999999999999999999999999999988877654 245677889999999999999
Q ss_pred cCChhHHHHHhhCCCCCcccC-----CCCCcEEEecCCCCh-hH----HHHHHHHHhcCCCcEEeccCCCCchhhccCce
Q 018694 113 VGYPSDVRHVLLHPSSGALSG-----LRPGGIIVDMTTSEP-SL----ASELSAAASSKNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~-----l~~~~~ii~~s~~~~-~~----~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
| +.+.++++++ ++.+. +.++..++.++.|.. .+ ++.+.+.++...+.++.+|.+..+...+..+.
T Consensus 85 v-Ps~~~~~~~~----~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~ 159 (189)
T d1n1ea2 85 I-PTQFLRGFFE----KSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTC 159 (189)
T ss_dssp S-CHHHHHHHHH----HHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEE
T ss_pred C-cHHHHHHHHH----HHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcE
Confidence 9 8889999998 66643 356778898888752 22 23333334444567788999988877766666
Q ss_pred eEEecCCHHHHHHHHHHHHhhC
Q 018694 183 AIFAGGDESVVQKLNPLFALMG 204 (351)
Q Consensus 183 ~~~~~g~~~~~~~v~~ll~~~g 204 (351)
..+++.+.+..+.++++|+...
T Consensus 160 ~viAs~~~~~a~~i~~lfst~~ 181 (189)
T d1n1ea2 160 VSIASADINVARRLQRIMSTGD 181 (189)
T ss_dssp EEEECSSHHHHHHHHHHHSCTT
T ss_pred EEEEeCCHHHHHHHHHHhCCCC
Confidence 6777779999999999998543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=1.8e-15 Score=126.16 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=111.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCC--cccchhHHhcC-------------CcccCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT--LSKAQPLLDIG-------------AHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~--~~~~~~~~~~g-------------~~~~~~~~~~~~~~DiIi~~vp 114 (351)
|||+|||+|+||+++|..|+++|++|.+|.|+ ++.++.+.... +...++.+++++++|+||+||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av- 79 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV- 79 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc-
Confidence 89999999999999999999999999999885 33455554431 234567888999999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh-------HHHHHHHHHhc--CCCcEEeccCCCCchhhccCceeEE
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS-------LASELSAAASS--KNCSAIDAPVSGGDRGAKTGTLAIF 185 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~--~~~~~v~~pv~~~~~~~~~g~~~~~ 185 (351)
++..+++++. ++.+++.++ .++.++++... ..+.+.+.... ..+.++.+|.+..+......+...+
T Consensus 80 ps~~~~~~~~----~l~~~l~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vi 154 (180)
T d1txga2 80 STDGVLPVMS----RILPYLKDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVF 154 (180)
T ss_dssp CGGGHHHHHH----HHTTTCCSC-EEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred chhhhHHHHH----hhccccccc-eecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEE
Confidence 8899999999 888888655 55556665311 12233222221 2345678899988877766666677
Q ss_pred ecCCHHHHHHHHHHHHhhCc
Q 018694 186 AGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 186 ~~g~~~~~~~v~~ll~~~g~ 205 (351)
++.+.+..+.++++|+.-..
T Consensus 155 as~~~~~a~~i~~~f~~~~f 174 (180)
T d1txga2 155 SSPSESSANKMKEIFETEYF 174 (180)
T ss_dssp ECSCHHHHHHHHHHHCBTTE
T ss_pred EcCCHHHHHHHHHHHCCCCE
Confidence 77788989999999976433
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.55 E-value=7.1e-14 Score=118.58 Aligned_cols=155 Identities=16% Similarity=0.109 Sum_probs=110.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------------CCcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------------GAHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.+|..+|..|++.||+|++||.++++++.+... .....++..+++.++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 899999999999999999999999999999999887776532 234577888989999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc--------CCCcEEeccCCC
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS--------KNCSAIDAPVSG 172 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~--------~~~~~v~~pv~~ 172 (351)
|+|||.|. .+.++..... .+.....++++||..|+..|++++.+...+.+ ....++.+|-+-
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~-~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~ 159 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIG-FAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFL 159 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHH-HHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCC
T ss_pred EEecCccccccccccchhhhhhhhhhh-heeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhh
Confidence 99997652 2333433000 23344567889999999999999887654421 234567777654
Q ss_pred Cc---hh-hccCceeEEecCCHHHHHHHHHHHHhhCc
Q 018694 173 GD---RG-AKTGTLAIFAGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 173 ~~---~~-~~~g~~~~~~~g~~~~~~~v~~ll~~~g~ 205 (351)
.+ .. .......++.+.+++..+.++++++.+..
T Consensus 160 ~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~ 196 (202)
T d1mv8a2 160 RESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDA 196 (202)
T ss_dssp CTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSS
T ss_pred cccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence 32 11 11222233344588889999999998765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.4e-13 Score=115.64 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=109.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c------------------CCcccCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I------------------GAHLADS 98 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~------------------g~~~~~~ 98 (351)
+..||+|||+|.||..||..++.+|++|++||++++.++...+ + .+....+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 4579999999999999999999999999999999875433211 1 1345667
Q ss_pred HHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhh
Q 018694 99 PHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGA 177 (351)
Q Consensus 99 ~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~ 177 (351)
..+++.++|+|+.|+|....++.-+.. ++...+.+++++.+.+++.+ ..++++.+.. .-+++.. +..+...
T Consensus 83 ~~~a~~~ad~ViEav~E~l~~K~~v~~---~l~~~~~~~~ilasnTS~l~--i~~la~~~~~-p~r~ig~HffnP~~~-- 154 (192)
T d1f0ya2 83 AASVVHSTDLVVEAIVENLKVKNELFK---RLDKFAAEHTIFASNTSSLQ--ITSIANATTR-QDRFAGLHFFNPVPV-- 154 (192)
T ss_dssp HHHHTTSCSEEEECCCSCHHHHHHHHH---HHTTTSCTTCEEEECCSSSC--HHHHHTTSSC-GGGEEEEEECSSTTT--
T ss_pred hHhhhcccceehhhcccchhHHHHHHH---HHhhhcccCceeeccCcccc--cchhhhhccC-HhHEEeeccccccCc--
Confidence 788899999999999988777655553 77777788888777666544 3355555432 2244433 2221111
Q ss_pred ccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC
Q 018694 178 KTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG 211 (351)
Q Consensus 178 ~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~ 211 (351)
..++.++.+ +++..+.+.++++.+|+ ++.+.+
T Consensus 155 --~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 155 --MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp --CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred --ccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 234555555 88999999999999999 666654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.51 E-value=4.8e-14 Score=117.42 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=86.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC---------------CcccCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG---------------AHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g---------------~~~~~~~~~~~~~~DiIi~~vp 114 (351)
+||+|||+|+||.++|..|+++||+|++|+|++++.+.+++.+ ....+++.+.+.++|+||+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v- 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV- 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence 6899999999999999999999999999999999888877653 233567889999999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
+....+.++. ++.+++.++++|+..++. ........+.+..
T Consensus 81 ~~~~~~~~~~----~i~~~l~~~~~iv~~~g~-~~~~~~~~~~~~~ 121 (184)
T d1bg6a2 81 PAIHHASIAA----NIASYISEGQLIILNPGA-TGGALEFRKILRE 121 (184)
T ss_dssp CGGGHHHHHH----HHGGGCCTTCEEEESSCC-SSHHHHHHHHHHH
T ss_pred chhHHHHHHH----HhhhccCCCCEEEEeCCC-CccHHHHHHHHHH
Confidence 8888999999 999999999988865554 3334455555543
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=1.5e-14 Score=124.76 Aligned_cols=155 Identities=9% Similarity=0.034 Sum_probs=124.2
Q ss_pred CCeEEEEccCh--hhHHHHH------HHHHCCCeEEEEeCCcccc-hhHHh-----------------------------
Q 018694 49 NTRIGWIGTGV--MGRSMCA------HLLNAGYTVTVFNRTLSKA-QPLLD----------------------------- 90 (351)
Q Consensus 49 ~~kI~iIG~G~--mG~~ia~------~L~~~g~~V~~~dr~~~~~-~~~~~----------------------------- 90 (351)
..++.++|+|- ||..++. .|++.|++|++.|.+++++ +.+.+
T Consensus 40 ~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~ 119 (242)
T d2b0ja2 40 THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACI 119 (242)
T ss_dssp CCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEE
T ss_pred eeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchh
Confidence 35688999986 8888877 6899999999999996542 11111
Q ss_pred -------cCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 91 -------IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 91 -------~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.|+.+++|+.|+++++|+||+|+|++..+.++++ ++.+++.++++|+|++++.+....++.+.+.++++
T Consensus 120 ~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~----~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi 195 (242)
T d2b0ja2 120 HLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIK----KFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195 (242)
T ss_dssp ESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHH----HHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS
T ss_pred hcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHH----HHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC
Confidence 1466788999999999999999998888999999 99999999999999999999999999999988899
Q ss_pred cEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 164 SAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 164 ~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
+|+....++.+. .....+....+++++..+.+.++|+.+|+ ++.
T Consensus 196 ~vi~~hp~a~pe-~~g~~li~~~~aseE~iekv~elles~Gk~~~v 240 (242)
T d2b0ja2 196 NITSYHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFK 240 (242)
T ss_dssp EEEECBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEE
T ss_pred EEECCCccCcCc-cccceEEecCCCCHHHHHHHHHHHHHHCCCeEe
Confidence 999774444332 22234344555699999999999999998 443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=8.4e-14 Score=114.04 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=78.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-------CcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-------AHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
|||+|||+|+||+.+|..|+++||+|++++|++++.+.....+ .....+..+....+|+||+|| |..+++++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v-ka~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTL-KAWQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECS-CGGGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEee-cccchHHH
Confidence 8999999999999999999999999999999988765543332 122334456667999999999 89999999
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~ 147 (351)
++ .+.+.+.+++.|+.+.|+.
T Consensus 80 ~~----~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 80 VK----SLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp HH----HHHTTSCTTSCEEEECSSS
T ss_pred HH----hhccccCcccEEeeccCcc
Confidence 99 8888889999999999984
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.41 E-value=5.1e-13 Score=111.57 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=106.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----------C-------------CcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----------G-------------AHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----------g-------------~~~~~~~~~~~ 103 (351)
...||+|||+|.||+.||..++.+|++|++||++++.++...+. + +....+.+ .+
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 81 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DF 81 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-cc
Confidence 35789999999999999999999999999999998765443221 1 22333333 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
.++|+||.|+|....++.-+.. ++.....+++++.+.+++.+ ...+.+.+.. .-+++....+-.+.. ..++
T Consensus 82 ~~adlViEav~E~l~~K~~lf~---~l~~~~~~~~IiaSnTS~l~--i~~la~~~~~-p~r~~g~Hf~nP~~~---~~lV 152 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLA---EVENHVREDAILASNTSTIS--ISLLAKALKR-PENFVGMHFFNPVHM---MPLV 152 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHH---HHHTTSCTTCEEEECCSSSC--HHHHGGGCSC-GGGEEEEECCSSTTT---CCEE
T ss_pred cccceeeeeecchHHHHHHHHH---HHHhhcCCCeeEEecccccc--HHHHHHhccC-chheEeeccccCccc---CCeE
Confidence 7899999999988887765542 77778888888887776654 3456655543 234544422211111 2345
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCC
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGG 211 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~ 211 (351)
.++.+ +++..+.+..+++.+|+ ++.+.+
T Consensus 153 Eiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 153 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 44444 88999999999999999 665543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.16 E-value=6.3e-11 Score=99.42 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=82.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc------------------CCcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI------------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|.+|..+|..|+ .|++|++||.++++++.++.. ......+......++|+|++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 89999999999999998775 699999999999888776542 12233455555678999999
Q ss_pred ecCChhH----------HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 112 IVGYPSD----------VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 112 ~vp~~~~----------~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
|||.+.. +..... .+. ...++.+++.-++..|++.+++...+.... ++-+|-+
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~----~~~-~~~~~~~iii~Stv~pgt~~~~~~~~~~~~--~~~~PE~ 142 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIK----EVL-SVNSHATLIIKSTIPIGFITEMRQKFQTDR--IIFSPEF 142 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHH----HHH-HHCSSCEEEECSCCCTTHHHHHHHHTTCSC--EEECCCC
T ss_pred cCCccccccCCCcceeEEeehhh----hhh-hcccceeEEeeeecCceeeeeeeeccchhh--hccchhh
Confidence 9976632 222332 222 235677889899999999999888776543 4445544
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.13 E-value=1.7e-10 Score=95.29 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=89.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-++|+|||+|.+|..+++.+..-|.+|.+||+++... ......++++++.++|+|++++|-..+.+.++..
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~-- 112 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKY-- 112 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--
T ss_pred cCceEEEeccccccccceeeeecccccccccccccccc------ceeeeechhhhhhccchhhccccccccccccccc--
Confidence 34789999999999999999999999999999986432 2344678999999999999999888888777764
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 113 -~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i 147 (181)
T d1qp8a1 113 -QHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 147 (181)
T ss_dssp -HHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred -ceeeeccccceEEeccccccccchhhhhhcccCcE
Confidence 55667889999999999877777888888876543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.08 E-value=6.5e-11 Score=98.65 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=95.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.+|..+++.+..-|.+|..||+...........++....+++++++++|+|++++|-....+.++..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~--- 120 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--- 120 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH---
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHH---
Confidence 37999999999999999999988999999999765555555557778889999999999999999888888777764
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 121 ~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i 155 (188)
T d2naca1 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 155 (188)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred HHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCc
Confidence 55667889999999999988888889988876443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.04 E-value=2e-10 Score=95.63 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=94.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.+|..+++.+..-|.+|.+||+...........+.....++++++.++|+|++++|-...++.++..
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~--- 123 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--- 123 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH---
T ss_pred ccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecH---
Confidence 47899999999999999999999999999998765544444445666778999999999999999988888877764
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 124 ~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i 158 (191)
T d1gdha1 124 ATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRL 158 (191)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHhhCcCCccEEEecCCccchhhHHHHHHHHcCCc
Confidence 55667889999999999988888889988876544
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.04 E-value=1.7e-10 Score=96.22 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=91.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
++|||||+|++|..+|+.+..-|.+|.+||+.... +.....++....++++++.++|+|++++|-....+.++.. +
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~-~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~---~ 125 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND---F 125 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH---H
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccc-cchhhhccccccchhhccccCCEEEEeecccccchhhhhH---H
Confidence 68999999999999999999999999999987543 2333346777889999999999999999877777766653 4
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 126 ~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i 159 (193)
T d1mx3a1 126 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRI 159 (193)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE
T ss_pred HHhccCCCCeEEecCCceEEcHHHHHHHHHcCCc
Confidence 5567889999999999988888888888876543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.94 E-value=5e-10 Score=93.59 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=87.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.+|..+|+.+..-|.+|.+||+.... .....+. ...++++++.++|+|++++|-....+.++..
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~--~~~~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~--- 116 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP--ELEKKGY-YVDSLDDLYKQADVISLHVPDVPANVHMIND--- 116 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSH---
T ss_pred CCeEEEecccccchhHHHhHhhhcccccccCccccc--cccccee-eeccccccccccccccccCCccccccccccH---
Confidence 378999999999999999999999999999987543 2222333 3568999999999999999888877766653
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+....+
T Consensus 117 ~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i 151 (197)
T d1j4aa1 117 ESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKI 151 (197)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHHhhhCCccEEEecCchhhhhhHHHHHHHhcccc
Confidence 44566789999999999888777888888876443
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=2.3e-09 Score=88.65 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=90.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++++|||+|.+|..+++.+..-|.+|.+||+..... .....++. ..+.++++.+||+|++++|-...++.++..
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~-~~~~~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~--- 118 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA-RAAQLGIE-LLSLDDLLARADFISVHLPKTPETAGLIDK--- 118 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH-HHHHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCH---
T ss_pred ceeeeeccccchhHHHHHHhhhccceEEeecCCCChh-HHhhcCce-eccHHHHHhhCCEEEEcCCCCchhhhhhhH---
Confidence 4789999999999999999999999999999875442 22333454 458999999999999999988888877764
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 119 ~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i 153 (184)
T d1ygya1 119 EALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 153 (184)
T ss_dssp HHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred HHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcE
Confidence 55667889999999999988888899998876544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.90 E-value=1.1e-09 Score=91.79 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=87.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
++|||||+|++|..+++.+..-|.+|.+||+....... ... ...+.++++..+|+|++++|-....+.++.. +
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---~~~-~~~~l~~l~~~~D~v~~~~plt~~T~~li~~---~ 118 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---PDF-DYVSLEDLFKQSDVIDLHVPGIEQNTHIINE---A 118 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---TTC-EECCHHHHHHHCSEEEECCCCCGGGTTSBCH---H
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh---cch-hHHHHHHHHHhcccceeeecccccccccccH---H
Confidence 68999999999999999999999999999987543221 122 2458999999999999999888887777663 5
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 119 ~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i 152 (199)
T d1dxya1 119 AFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 152 (199)
T ss_dssp HHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred HhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence 5567889999999999988888888888875443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.5e-09 Score=88.76 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=88.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|.+|..+++.+..-|.+|.+||+...... .......+++++++.+|+|++++|-....+.++..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~--- 116 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--- 116 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH---
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhccH---
Confidence 47999999999999999999999999999998754321 12344568999999999999999888888777764
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+....++++.++|+++.+..-..+.+.+.+.+..
T Consensus 117 ~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~ 150 (188)
T d1sc6a1 117 KEISLMKPGSLLINASRGTVVDIPALADALASKH 150 (188)
T ss_dssp HHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTS
T ss_pred HHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCC
Confidence 5666788999999999998888889999887543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.84 E-value=7.4e-09 Score=85.63 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=49.1
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-------CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~~DiIi~~v 113 (351)
|||+|| |+|.||.++|+.|+++||+|++|+|++++++.+.++. .....+........+....+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTI 72 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhhe
Confidence 799999 8999999999999999999999999999887776651 122223344444556666666
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.73 E-value=1.4e-08 Score=82.92 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=76.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC---------cccCCHHHhhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA---------HLADSPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~---------~~~~~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
+||.|||+|.||..+|+.|.+.||+|+++||+.++++.+.+..- ......++.+...|+++.++|......
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~ 82 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHAT 82 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhhH
Confidence 68999999999999999999999999999999999998877621 111233455678899999995544333
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
... .. ...+..+++++...+ ....+.+.....+..++.
T Consensus 83 -~~~----~~---~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 120 (182)
T d1e5qa1 83 -VIK----SA---IRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 120 (182)
T ss_dssp -HHH----HH---HHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred -HHH----HH---HhhccceeecccCcH-HHHHHHHHhccccceeeh
Confidence 332 12 235667888776644 345666655555555553
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.64 E-value=9.4e-08 Score=74.25 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=63.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCccc----CCHH---Hh-hcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLA----DSPH---SL-ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~----~~~~---~~-~~~~DiIi~~vp~~~~~~ 120 (351)
|||.|+|+|.+|..+++.|.+.|++|+++|.++++++.+.++ +..+. .+.+ ++ ++++|.++.+++.+..-.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~ 80 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL 80 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence 799999999999999999999999999999999999888765 54331 1222 21 468999999885543322
Q ss_pred HHhhCCCCCcccCCCCCcEEEecC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.+. .....+.++.+|.-..
T Consensus 81 -~~~----~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 81 -MSS----LLAKSYGINKTIARIS 99 (132)
T ss_dssp -HHH----HHHHHTTCCCEEEECS
T ss_pred -HHH----HHHHHcCCceEEEEec
Confidence 222 2223345566665444
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=1.6e-07 Score=75.67 Aligned_cols=108 Identities=28% Similarity=0.281 Sum_probs=76.9
Q ss_pred CeEEEEccChhhHH-HHHHHHHC-CCeE-EEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNA-GYTV-TVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~-g~~V-~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
+||||||+|.||.. ....+... ++++ .++|+++++.+.+.+. ++...++.+++..+.|+|++|+|+..+.+-+..
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~- 80 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST- 80 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH-
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccccc-
Confidence 79999999999986 56666654 5564 4789999988877655 788888999999999999999987776665554
Q ss_pred CCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcE
Q 018694 126 PSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 126 ~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
.+ ..++ ++++- ...+....+++.+.....+..+
T Consensus 81 ---al----~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 81 ---LL----NAGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp ---HH----HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ---cc----cccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 22 2333 44442 1233667777777776555433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.63 E-value=3.4e-08 Score=76.97 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=57.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHh-hcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSL-ASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~-~~~~DiIi~~vp~~~~~~~ 121 (351)
+++.|+|+|.+|..+++.|.+.|++|+++|.++++++.+.+.|... ...++++ +.++|.+|++++.......
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 3689999999999999999999999999999999999888776322 1122233 5689999999965554443
Q ss_pred Hh
Q 018694 122 VL 123 (351)
Q Consensus 122 v~ 123 (351)
++
T Consensus 81 ~~ 82 (134)
T d2hmva1 81 LT 82 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.60 E-value=1.1e-07 Score=75.94 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=73.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+||+|||+|..|.+-|.+|.++|.+|++--|... ..+...+.|+.+ .+.+|+++.+|+|.+.+ ++..-.++++.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~-PD~~q~~vy~~--- 91 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILT-PDEFQGRLYKE--- 91 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECS-CHHHHHHHHHH---
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeec-chHHHHHHHHH---
Confidence 6899999999999999999999999998877644 345556668876 47899999999999999 55555667742
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.+.+.+.+++.+. .+.+
T Consensus 92 ~I~p~lk~g~~L~-FaHG 108 (182)
T d1np3a2 92 EIEPNLKKGATLA-FAHG 108 (182)
T ss_dssp HTGGGCCTTCEEE-ESCC
T ss_pred hhhhhcCCCcEEE-Eecc
Confidence 6889999998877 4444
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.59 E-value=2.6e-08 Score=80.14 Aligned_cols=68 Identities=31% Similarity=0.414 Sum_probs=56.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-CCc--ccCCHHHhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-GAH--LADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g~~--~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
..||.|||+|.||..++++|...|. +|++++|+.++++.+..+ |.. ..++..+.+.++|+||.|++.+
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence 3689999999999999999999998 699999999988877766 433 3456777788999999999543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.55 E-value=9.3e-08 Score=75.57 Aligned_cols=92 Identities=12% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.|||+|||+|.+|..+|..|+..|. +|+++|+++++.+..... ......+.++ +.+||+|+++...+
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~~ 83 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGAP 83 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEecccc
Confidence 4799999999999999999998874 899999998765432211 1223445554 57999999997443
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. ++..+ .++.+++..+|-
T Consensus 84 ~~~g~~r~~l~~~N~~i~~~~~~----~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 84 QKPGESRLDLVNKNLNILSSIVK----PVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp ---------CHHHHHHHHHHHHH----HHHHT-TCCSEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH----HHhhc-CCCcEEEEeCCc
Confidence 2 1334444 44443 467788877763
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.51 E-value=3.1e-07 Score=75.41 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=76.3
Q ss_pred CeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-C----CcccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-G----AHLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g----~~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
+||||||+|.||...+..+... +++|+ ++|+++++.+.+.++ + ...+++.+++++ +.|+|++|+|+..+.+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 6899999999999999999875 55766 779999887777654 3 356789999874 5799999997777776
Q ss_pred HHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 121 HVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
-+.. .+ ..+. +++.-- .......+++.+.....++.+
T Consensus 82 ~~~~----~l----~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 82 WAIK----AA----EKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHHH----HH----TTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hhhh----hh----hccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 5554 22 2344 334311 133666777777776656544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.49 E-value=1.5e-07 Score=74.50 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
...||+|||+|.+|..+|..|...|. ++.++|+++++.+..... .........+.+.++|+|+++...
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 34799999999999999999998776 899999998764332211 233333445667899999998843
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.+ ++..+ .++.+++..+|-
T Consensus 85 ~~~~~~~R~dl~~~N~~i~~~i~~----~i~~~-~p~a~~ivvtNP 125 (148)
T d1ldna1 85 NQKPGETRLDLVDKNIAIFRSIVE----SVMAS-GFQGLFLVATNP 125 (148)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHH----HHHHH-TCCSEEEECSSS
T ss_pred ccccCcchhHHHHHHHHHHHHHHH----HHHhh-CCCceEEEecCc
Confidence 31 2345555 55544 466788877774
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.49 E-value=2.2e-07 Score=74.13 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------C----CcccCCHHHhhcCCCEEEEec
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------G----AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~~~~~~~DiIi~~v 113 (351)
...+||+|||+|.+|..+|..|...++ +++++|+++++++..... + ....++.++.++++|+|+++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita 84 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 84 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence 345799999999999999998888776 899999998765443221 1 223456677889999999988
Q ss_pred CChh--------------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 114 GYPS--------------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 114 p~~~--------------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..+. .+++++. ++..+ .++.+++..+|-
T Consensus 85 g~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~----~i~~~-~p~aiviivsNP 132 (154)
T d1pzga1 85 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQ----NIKKY-CPKTFIIVVTNP 132 (154)
T ss_dssp SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHH----HHHHH-CTTCEEEECCSS
T ss_pred ccccCCCCCCcccchhhhhhhhHHHHHHHHH----HHHhc-CCCcEEEEeCCc
Confidence 4221 2444444 44443 467788877774
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=1.3e-07 Score=74.16 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=63.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecCChh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp~~~- 117 (351)
|||+|||+|.+|..+|..++..+. ++.++|+++++++..... .....++..+.++++|+|+++...+.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 799999999999999999988775 899999998765432211 12233334456789999999973321
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.+ .+..+ .++.+++..+|-
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~~----~i~~~-~p~aivivvtNP 118 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIAR----NVSKY-APDSIVIVVTNP 118 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH----HHHHH-CTTCEEEECSSS
T ss_pred CCcchhhhhccccchHHHHHH----HHHhc-CCCcEEEEeCCc
Confidence 1344444 44443 467788887774
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.45 E-value=2.3e-07 Score=72.93 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=63.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcc-cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHL-ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~-~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.+|..++..|+..|. ++.++|+++++.+..... ...+ .++..+.+.++|+|+++...+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 799999999999999999998874 899999998765432111 1222 234455678999999997422
Q ss_pred ---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 ---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..++++.+ .+..+ .++.+++..+|-
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~----~i~~~-~p~aivivvtNP 120 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTD----NIMKH-SKNPIIIVVSNP 120 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH----HHHHH-CSSCEEEECCSS
T ss_pred CCCCCchHHHHHHHHHHHHHHHH----Hhhcc-CCCeEEEEecCC
Confidence 12344554 45443 477788887773
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.44 E-value=3.3e-07 Score=75.68 Aligned_cols=90 Identities=19% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC------CeEEEEeCC-cccchhHHhcCCcc----cCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG------YTVTVFNRT-LSKAQPLLDIGAHL----ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g------~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.++||+|||+|..|.+.|.+|.++| ..|++.-|. ....+...+.|... ..+.+|+++.+|+|.+.+ ++
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl-PD 121 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI-SD 121 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS-CH
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec-ch
Confidence 4578999999999999999999955 557666544 34456666678763 346889999999999999 66
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEe
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVD 142 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~ 142 (351)
+.-.++++ ++.+++.+++.+.-
T Consensus 122 e~Q~~vy~----~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 122 SAQADNYE----KVFSHMKPNSILGL 143 (226)
T ss_dssp HHHHHHHH----HHHHHSCTTCEEEE
T ss_pred HHHHHHHH----HHHHhcCCCceeee
Confidence 66666888 89999999998774
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.42 E-value=7.2e-07 Score=71.95 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=74.1
Q ss_pred CeEEEEccChhhHH-HHHHHHHC-CCeEEEEeCCcccchhHHhc-CC-cccCCHHHhhc-CCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GA-HLADSPHSLAS-QSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||||||+|.+|.. ....+.+. +.++.++|+++++.+.+.+. +. ..+++.+++++ +.|+|++|+|+..+.+-+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~ 81 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF 81 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc
Confidence 79999999999976 56666554 45888999999988888765 43 45677788765 67999999977776665554
Q ss_pred CCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 125 HPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 125 ~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
.+. .|. ++++-- .......+++.+...+.+..+
T Consensus 82 ----al~----~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 82 ----FLH----LGIPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp ----HHH----TTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ----ccc----cccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 222 233 555421 123566677777776656543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.38 E-value=4.3e-07 Score=71.29 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=63.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhH----Hhc----C----CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPL----LDI----G----AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~----~~~----g----~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+|.+|..+|..++..|. ++.++|+++++.+.. ... . +....+. +.+.++|+|+++...
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence 799999999999999999988775 799999998775432 110 1 2223344 567899999998843
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..++++.+ ++..+ .++.+++..+|-
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~----~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAK----KIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHH----HHHTT-STTCEEEECSSS
T ss_pred cCCCCCchHHHHHHhhHHHHHHHH----HHHhh-CCCcEEEEecCC
Confidence 2 12344554 55544 467788888873
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.38 E-value=4.7e-07 Score=73.42 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.+||||||+|.||..++..+.+. +++++ +++++++.... .+.....+.++..++.|+|++|+|+..+.+-+..
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~-- 77 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAP-- 77 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHH--
T ss_pred cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---cccccchhhhhhccccceEEEeCCCcccHHHHHH--
Confidence 36899999999999999999864 45644 67888665432 2445566777778899999999977776665444
Q ss_pred CCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCC
Q 018694 127 SSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKN 162 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~ 162 (351)
.+..|..+|.+... .+...+.+.+..+..+
T Consensus 78 ------aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~ 110 (170)
T d1f06a1 78 ------KFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG 110 (170)
T ss_dssp ------HHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred ------HHHCCCcEEEecCccccCHHHHHHHHHHHHhcC
Confidence 23467766654332 1333445554444333
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.1e-06 Score=69.95 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=68.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHH-HHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDV-RHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~-~~v~~~~~~ 128 (351)
++++|+|+|.+|..+|+.+...|.+|++|+++|-+.-+..-.|..+. +.++++..+|+++.|+.....+ .+.+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~vI~~eh~----- 98 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIILGRHF----- 98 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBCHHHH-----
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccchhHHHH-----
Confidence 68999999999999999999999999999999865444444466654 7899999999999999543322 2223
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..++++.++.+.+.-
T Consensus 99 ---~~MKdgaIL~N~Ghf 113 (163)
T d1li4a1 99 ---EQMKDDAIVCNIGHF 113 (163)
T ss_dssp ---TTCCTTEEEEECSSS
T ss_pred ---HhccCCeEEEEeccc
Confidence 346789899987754
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=2.2e-06 Score=70.02 Aligned_cols=107 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred CeEEEEccChhhHH-HHHHHHHCC--CeEE-EEeCCcccchhHHhc-C-CcccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNAG--YTVT-VFNRTLSKAQPLLDI-G-AHLADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~g--~~V~-~~dr~~~~~~~~~~~-g-~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
+||||||+|.+|.. ....+.+.+ ++|+ ++|+++++.+.+.++ + ...+++.+++++ +.|+|++|+|+..+.+-
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~ 83 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF 83 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence 68999999999986 577777643 3655 789999888887665 4 356789999885 57999999977666554
Q ss_pred HhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCc
Q 018694 122 VLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~ 164 (351)
+.. +. ..++ ++++-- ........++.+...+.+..
T Consensus 84 ~~~-----al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 84 IEK-----AL---RKGVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp HHH-----HH---HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred ccc-----cc---ccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 443 22 2343 444321 12356666777776655543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.29 E-value=7.5e-07 Score=73.96 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=80.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.||+|-|+|++|..+|+.|.+.|..|+++|.+++++......|....+ .+++. .+||+++-|--...-.++.+.
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a~---- 102 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVAR---- 102 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHHHHH----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHHHHh----
Confidence 689999999999999999999999999999999888887777777654 45544 589998887733333344444
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+ +-++|+...|. |.+.+...+.+.++|+.|++-
T Consensus 103 ~i-----~ak~i~e~AN~-p~~~~~~~~~L~~rgI~~iPD 136 (201)
T d1c1da1 103 TL-----DCSVVAGAANN-VIADEAASDILHARGILYAPD 136 (201)
T ss_dssp HC-----CCSEECCSCTT-CBCSHHHHHHHHHTTCEECCH
T ss_pred hh-----hhheeeccCCC-CcchhhHHHHhcccceEEEeh
Confidence 33 34578877776 444455667777889888754
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.29 E-value=1.2e-06 Score=73.98 Aligned_cols=108 Identities=12% Similarity=0.126 Sum_probs=73.1
Q ss_pred CeEEEEccChhhHH-HHHHHHHC-CCeEE-EEeCCcccchhHHhc-CC-----cccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-GA-----HLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-g~-----~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
-||||||+|.||.. +...+... +.+|+ ++|+++++.+.+.++ |+ ..++|.+++++ +.|+|++|+|+..+
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H 113 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH 113 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh
Confidence 48999999999974 66666554 55755 889999998887765 43 34678899886 47999999977777
Q ss_pred HHHHhhCCCCCcccCCCCCc-EEEec-CCCChhHHHHHHHHHhcCCCcE
Q 018694 119 VRHVLLHPSSGALSGLRPGG-IIVDM-TTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~-~ii~~-s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
.+-+.. .+. .++ ++++- ....+....++.+...+.++.+
T Consensus 114 ~~~~~~----al~----~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 114 AEFAIR----AFK----AGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp HHHHHH----HHH----TTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhHHHH----hhh----cchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 665554 232 333 44442 1134666777777666555443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.29 E-value=1.1e-06 Score=68.80 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=59.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---C------CcccCCHHHhhcCCCEEEEecCChh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---G------AHLADSPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---g------~~~~~~~~~~~~~~DiIi~~vp~~~- 117 (351)
.||+|||+|.+|..+|..+...+. |+.++|+++++.+..... . ....+...+.+.++|+|+++...+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 589999999999999999998877 899999998876443221 1 1222333455789999999863322
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++++ ++..+ .++.+++..+|-
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~----~i~~~-~p~ai~ivvtNP 119 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQ----NIMKY-YNHGVILVVSNP 119 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHH----HHHHH-CCSCEEEECSSS
T ss_pred cCcchhHHhhHHHHHHHHHHH----Hhhcc-CCCceEEEecCh
Confidence 1334444 44443 466778777773
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.29 E-value=9.6e-07 Score=70.47 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=63.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc--------C--CcccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI--------G--AHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~--------g--~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.||+|||+|++|..+|..|...|. ++.++|+++++.+..... + ........+.+.++|+|+++...+.
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~~~ 100 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQ 100 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCCcc
Confidence 699999999999999999999988 899999997765332211 1 1112233455789999999874331
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++. ++..+ .++.+++..+|-
T Consensus 101 ~~g~tR~~l~~~N~~i~~~i~~----~i~~~-~p~aiiivvtNP 139 (160)
T d1i0za1 101 QEGESRLNLVQRNVNVFKFIIP----QIVKY-SPDCIIIVVSNP 139 (160)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHH----HHHHH-CTTCEEEECSSS
T ss_pred ccCcchHHHHHHHHHHHHHHHH----HHHhc-CCCcEEEEeCCc
Confidence 2344444 44443 467778877774
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.28 E-value=1e-06 Score=69.33 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=61.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc--------C--CcccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI--------G--AHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~--------g--~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
+||+|||+|.+|..+|..|...|. +++++|+++++.+..... + .....+..+.+.++|+||++...+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 699999999999999999988775 899999998875432211 1 1222233345789999999875321
Q ss_pred -------------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 -------------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 -------------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.. .+.. ..++.+++..+|-
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~----~i~~-~~p~aivivvtNP 124 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGT----NLKE-SGFHGVLVVISNP 124 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHH----HHHH-TTCCSEEEECSSS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHH----HHhh-cCCCeEEEEecCc
Confidence 1333443 4433 3467788877774
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.28 E-value=1e-06 Score=69.12 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=63.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhH----Hhc-------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPL----LDI-------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~----~~~-------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.||+|||+|.+|..+|..+...|. |+.++|+++++.+.. ... .+...++. +.++++|+|+++...+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence 589999999999999999998887 899999998765432 111 12223344 4577899999998443
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. ++..+ .++.+++..+|-
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~----~i~~~-~p~ai~ivvtNP 120 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMP----NLVKV-APNAIYMLITNP 120 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH----HHHHH-CTTSEEEECCSS
T ss_pred cCCCCchhhhhhhhHHHHHHHHH----HHHhh-CCCeEEEEeCCc
Confidence 1 2344444 45444 466777777764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=3.2e-06 Score=68.27 Aligned_cols=112 Identities=22% Similarity=0.220 Sum_probs=75.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C-CcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G-AHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g-~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++|.|||+|..+.+++..|.+.|.+|++++|+.++.+.+.+. + +......+....++|+||.|+|-+..-+ ...
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~-~~~ 97 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD-IPA 97 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC-CCC
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcccC-CCC
Confidence 679999999999999999999999999999999988777654 2 2222222222457899999997654211 111
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-EEec
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS-AIDA 168 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~-~v~~ 168 (351)
--...+.++.+++|+.-....+ .+.+.....|+. ++++
T Consensus 98 ----~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~i~G 136 (170)
T d1nyta1 98 ----IPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGSKRNADG 136 (170)
T ss_dssp ----CCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTCCEEECT
T ss_pred ----CcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCCCcccCC
Confidence 1123467888999998663333 344444555653 4544
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.24 E-value=9.3e-07 Score=71.36 Aligned_cols=111 Identities=15% Similarity=0.259 Sum_probs=74.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhH--HHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSD--VRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~--~~~v~~~ 125 (351)
.||.|||+|.++.+++..|.+.|. +|++++|+.++.+.+.+. +........ ..++|+||-|+|-+.. .++.-.
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~l- 94 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL- 94 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCccccccccc-
Confidence 579999999999999999999997 799999999998887665 433332222 2578999999963311 000000
Q ss_pred CCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 126 PSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 126 ~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+ ...+.++.+++|+.-....+ .+.+.....|+.++++
T Consensus 95 ---~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~G 133 (167)
T d1npya1 95 ---AFPKAFIDNASVAFDVVAMPVET--PFIRYAQARGKQTISG 133 (167)
T ss_dssp ---SSCHHHHHHCSEEEECCCSSSSC--HHHHHHHHTTCEEECH
T ss_pred ---cccHhhcCCcceEEEEeeccCCC--HHHHHHHHCCCeEEEC
Confidence 01 01234677899987663332 3455555677777765
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.21 E-value=1.7e-06 Score=68.92 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=61.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhH----Hhc----C---CcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPL----LDI----G---AHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~----~~~----g---~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.||+|||+|.+|..+|..|...|. ++.++|+++++++.. ... + .....+. +.+.++|+|+++...+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvitag~~ 98 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITAGAR 98 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEecccc
Confidence 699999999999999999998887 899999998765432 211 1 1123344 4457999999987432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. ++..+ .++.+++..+|-
T Consensus 99 ~~~~~~R~dll~~N~~i~~~i~~----~i~~~-~p~~ivivvtNP 138 (159)
T d2ldxa1 99 MVSGQTRLDLLQRNVAIMKAIVP----GVIQN-SPDCKIIVVTNP 138 (159)
T ss_dssp CCTTTCSSCTTHHHHHHHHHHTT----THHHH-STTCEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH----HHhcc-CCCeEEEEeCCc
Confidence 1 2334443 44433 567788888873
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.20 E-value=2.1e-06 Score=67.81 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------C--Ccc-cCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------G--AHL-ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g--~~~-~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
+||+|||+|.+|..+|..|...+. ++.++|+++++.+..... + ..+ ..+..+.+.++|+|+++...+.
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~~ 83 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTK 83 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccccc
Confidence 699999999999999998887776 899999998765443221 1 112 2233455689999999985221
Q ss_pred --------------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.+ ++..+ .++.+++..+|-
T Consensus 84 ~~g~~~~~~~R~~l~~~N~~iv~~i~~----~i~~~-~p~aivivvtNP 127 (150)
T d1t2da1 84 APGKSDKEWNRDDLLPLNNKIMIEIGG----HIKKN-CPNAFIIVVTNP 127 (150)
T ss_dssp CTTCCSTTCCGGGGHHHHHHHHHHHHH----HHHHH-CTTSEEEECSSS
T ss_pred CCCCCccccchhHHHHHHHHHHHHHHH----HHHhc-CCCeEEEEecCc
Confidence 2344444 44443 467788888774
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.18 E-value=1.9e-06 Score=67.57 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=63.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcC---------CcccCCHHHhhcCCCEEEEecCCh-
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIG---------AHLADSPHSLASQSDVVFSIVGYP- 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g---------~~~~~~~~~~~~~~DiIi~~vp~~- 116 (351)
.||+|||+ |.+|.++|..|...|. ++.++|.++.+.+.+--.. ....++..+.++++|+|+++...+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 38999995 9999999999998887 7999999865433321111 112345567789999999987432
Q ss_pred --------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 --------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 --------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..++++.. ++..+ .++.+++..+|-
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~----~i~~~-~p~~iiivvtNP 119 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTA----ACAQH-CPDAMICIISNP 119 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHH----HHHHH-CTTSEEEECSSC
T ss_pred CCCCCcchHHHHHHHHHHHHHH----HHHhc-CCCeEEEEecCc
Confidence 12455555 55555 567777777774
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.16 E-value=3.5e-06 Score=65.93 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=62.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc----------C--CcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI----------G--AHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~----------g--~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||+|||+|++|..+|..|+..+. ++.++|+++++.+..... . +....+.++ +.++|+||++...+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeecc
Confidence 599999999999999999988776 899999988764332211 1 222445555 57899999999543
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .+++++. ++..+ .++.+++..+|-
T Consensus 81 ~~~~~~r~dl~~~N~~i~~~i~~----~i~k~-~p~aivivvtNP 120 (142)
T d1uxja1 81 RKPGMSREDLIKVNADITRACIS----QAAPL-SPNAVIIMVNNP 120 (142)
T ss_dssp ---------CHHHHHHHHHHHHH----HHGGG-CTTCEEEECSSS
T ss_pred CCcCcchhHHHhHHHHHHHHHHH----HHhcc-CCCceEEEeCCc
Confidence 2 1345555 55544 456677777663
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.09 E-value=1.2e-06 Score=78.22 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=82.4
Q ss_pred hccccccccchhh-HHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSLSVS-SLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~ 88 (351)
...+++++||... .+...++.+ . ...+++|||+|.++...+..|... .. +|.+|+|++++.+.+
T Consensus 100 d~~~lT~~RTaA~sala~~~la~----~---------~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~ 166 (320)
T d1omoa_ 100 DATYTTSLRTGAAGGIAAKYLAR----K---------NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKF 166 (320)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSC----T---------TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHH
T ss_pred cccccccccchhHHHHHHHHhcc----C---------CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHH
Confidence 5567888899444 444444432 1 125799999999999999998752 33 799999999987776
Q ss_pred Hhc----CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh
Q 018694 89 LDI----GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 89 ~~~----g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~ 148 (351)
.+. ++....+.++.+.++|+|+.|++.. ..++. ...+.+|..|..+++..|
T Consensus 167 ~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P~~~------~~~l~~G~hv~~iGs~~p 221 (320)
T d1omoa_ 167 VSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KPVVK------AEWVEEGTHINAIGADGP 221 (320)
T ss_dssp HHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SCCBC------GGGCCTTCEEEECSCCST
T ss_pred HHHHHhcCCccccchhhhhccccEEEEeccCc---ccccc------hhhcCCCCeEeecCCccc
Confidence 554 6777778888899999999999532 22232 135678999888877554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=5.4e-06 Score=67.70 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=73.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh-------c-CCc----ccC---CHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD-------I-GAH----LAD---SPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~-------~-g~~----~~~---~~~~~~~~~DiIi~~v 113 (351)
.+|.|||+|.+|.+++..|.+.|. ++++++|++++.+++.. . ... -.. ...+...++|+||-|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 589999999999999999999888 79999999877654332 1 111 111 2334567899999999
Q ss_pred CChhHH--HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 114 GYPSDV--RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 114 p~~~~~--~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
|....- .+.+. .-...+.++.+++|+.-....+ .+.+.....|+.++++
T Consensus 99 p~G~~~~~~~~~~----~~~~~~~~~~~v~Di~Y~p~~T--~ll~~a~~~g~~~i~G 149 (182)
T d1vi2a1 99 KVGMKPLENESLV----NDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTIDG 149 (182)
T ss_dssp STTSTTSCSCCSC----CCGGGSCTTCEEEECCCSSSSC--HHHHHHHTTTCEEECH
T ss_pred CCccccccchhhh----hHHHhhhcchhhHHhhcCcccc--HHHHHHHHCcCeEecc
Confidence 654321 01111 1123457888999998652322 3444455678777765
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=98.08 E-value=9.3e-07 Score=79.21 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=80.5
Q ss_pred hccccccccchh-hHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSLSV-SSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~~ 88 (351)
-...++++||.. +.+...++.+ .+ -.+++|||+|.++...+..+.. .+. +|.+|+|++++.+.+
T Consensus 103 d~~~LTa~RTaA~salaa~~LA~----~d---------a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~ 169 (340)
T d1x7da_ 103 ELTIATALRTAATSLMAAQALAR----PN---------ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKL 169 (340)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSC----TT---------CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHHHhhc----cC---------CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHH
Confidence 445667888844 4444444322 11 1479999999999999888764 333 799999999887777
Q ss_pred Hhc-----CC--cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh
Q 018694 89 LDI-----GA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 89 ~~~-----g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~ 148 (351)
.++ |+ ..+++.++++..+|+|+.|++ ......++. ...++++..|..+..-.|
T Consensus 170 ~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~~Pv~~------~~~l~pG~hI~aiGs~~p 229 (340)
T d1x7da_ 170 IANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAYATIIT------PDMLEPGMHLNAVGGDCP 229 (340)
T ss_dssp HHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSEEEEEC------GGGCCTTCEEEECSCCBT
T ss_pred HHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCCCcccc------hhhcCCCCEEeecccchh
Confidence 553 43 458899999999999999993 322223443 134678888887776544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2.3e-06 Score=71.17 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=52.7
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
.|+||.|+| .|.+|+.++..|.++||+|+++.|++++.......++.+ ..+..+++.++|+||.|++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 478999998 699999999999999999999999998876654444322 2234566788898888873
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=5.3e-06 Score=66.98 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=47.9
Q ss_pred CeEEEEccChhhHHHH--HHHHHC----CCeEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMC--AHLLNA----GYTVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia--~~L~~~----g~~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|++|...+ ..+... +.+++++|+++++++..... .+...++.++++.++|+|++
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~ 82 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN 82 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEee
Confidence 7999999999997643 334432 45999999998876542211 13456788999999999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+..
T Consensus 83 ~~~ 85 (171)
T d1obba1 83 TAM 85 (171)
T ss_dssp CCC
T ss_pred ecc
Confidence 873
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.05 E-value=6e-06 Score=65.16 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=70.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH-HHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD-VRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~-~~~v~~~~~~ 128 (351)
+++.|+|+|..|..+|..+...|..|++++++|-+.-+..-.|..+ .+.++++..+|++|.++..... ..+.+.
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~~~h~~---- 98 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKLEHLL---- 98 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCHHHHT----
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCccccHHHHH----
Confidence 6899999999999999999999999999999985544444447776 5889999999999999965442 233333
Q ss_pred CcccCCCCCcEEEecCCCCh
Q 018694 129 GALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~ 148 (351)
.++++.++.+......
T Consensus 99 ----~MKdgaIl~N~GHfd~ 114 (163)
T d1v8ba1 99 ----KMKNNAVVGNIGHFDD 114 (163)
T ss_dssp ----TCCTTCEEEECSSTTT
T ss_pred ----HhhCCeEEEeccccch
Confidence 4568888888776543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=98.04 E-value=1.1e-05 Score=61.81 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=66.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEE-EeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTV-FNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~-~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+|.|+ |.||+.+++.+.+.|+++.. +|++.. +.+.++|+||=.+ .|..+.+.++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS-~p~~~~~~l~--- 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTVD--- 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEec-CHHHHHHHHH---
Confidence 79999996 99999999999999998663 354321 2235789999999 8888887776
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
... ..+..+|..+||......+..+.+ .+...++-+|++
T Consensus 60 -~~~---~~~~p~ViGTTG~~~~~~~~i~~~-ak~~pv~~a~N~ 98 (128)
T d1vm6a3 60 -LCK---KYRAGLVLGTTALKEEHLQMLREL-SKEVPVVQAYSR 98 (128)
T ss_dssp -HHH---HHTCEEEECCCSCCHHHHHHHHHH-TTTSEEEECSCT
T ss_pred -HHH---hcCCCEEEEcCCCCHHHHHHHHHH-HhhCCEEeeecc
Confidence 332 456678888887554433333333 245666666665
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.03 E-value=1.9e-05 Score=57.34 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGIC 292 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 292 (351)
..|...|++.|.+.+.-+.+++|...+|++.|++..++.+.+.....-. ..+.++. ..+|+.-.+..||+..+
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~-----~~~~~~~--pG~G~GG~ClpKD~~al 74 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLN-----LSRYYMR--PGFAFGGSCLPKDVRAL 74 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTT-----TSSTTCS--CCSCCCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcccc-----ccccccC--CcccCCccccchhHHHH
Confidence 4688999999999999999999999999999999999999886543110 0111111 11355667789999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 018694 293 LKECQNMGLALPGLALAQQLYL 314 (351)
Q Consensus 293 ~~~a~~~gv~~p~~~~~~~l~~ 314 (351)
.+.+++.|++.++++++.+.-+
T Consensus 75 ~~~a~~~~~~~~ll~~~~~~N~ 96 (98)
T d1mv8a1 75 TYRASQLDVEHPMLGSLMRSNS 96 (98)
T ss_dssp HHHHHHTTCCCTTGGGHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHh
Confidence 9999999999999888776543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.03 E-value=6.7e-06 Score=64.40 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=45.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCccc--chhH----Hhc------CCcc---cCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSK--AQPL----LDI------GAHL---ADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~--~~~~----~~~------g~~~---~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+ |.+|..+|..|+..|. ++.++|++++. .+.. .+. .... .++..+.++++|+||+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 79999995 9999999999999885 89999998632 2221 110 1111 1223356789999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+..
T Consensus 81 tAG 83 (145)
T d1hyea1 81 TSG 83 (145)
T ss_dssp CCS
T ss_pred ecc
Confidence 863
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=98.01 E-value=3.2e-06 Score=68.35 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=68.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.|+|+|.++.+++..|.+.+.+|++++|+.++++.+.+. .+......+....++|+||-|+|-... .....
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~-~~~~~ 97 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGTAS 97 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--------C
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc-ccccc
Confidence 679999999999999999999888999999999988877664 122222222234689999999965532 11111
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.....+.++.+++|+.-..|..+ .+.......|+
T Consensus 98 ----~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~ 131 (171)
T d1p77a1 98 ----VDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL 131 (171)
T ss_dssp ----CCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred ----hhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence 11223456778888775444222 23333344455
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.98 E-value=1.8e-06 Score=68.78 Aligned_cols=94 Identities=17% Similarity=0.300 Sum_probs=68.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC---Ccc----cCCHHHhhcCCCEEEEecCC-hhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG---AHL----ADSPHSLASQSDVVFSIVGY-PSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g---~~~----~~~~~~~~~~~DiIi~~vp~-~~~~~~ 121 (351)
.||.|||+|..|..-++.....|.+|+++|.++++++++.... +.. ...+++.+.++|+||-++-- ......
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~ 112 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI 112 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCe
Confidence 6899999999999999999999999999999999888776652 211 12346677899999999821 111122
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++.. +....++++.+|||++..
T Consensus 113 lIt~---~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 113 LVPA---SLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp CBCH---HHHTTSCTTCEEEETTCT
T ss_pred eecH---HHHhhcCCCcEEEEeecC
Confidence 2221 334457799999999963
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=1.2e-05 Score=64.13 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHC-CCeEE-EEeCCccc-c----h---hHHhcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNA-GYTVT-VFNRTLSK-A----Q---PLLDIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~-~~dr~~~~-~----~---~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
..+||+|+|+ |.||+.+++.+.+. +++++ ++++.... . . .....++...++.++....+|+||-.+ .|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs-~p 81 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RP 81 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-cH
Confidence 4589999996 99999999988764 55654 44554221 1 1 111225677888888889999999999 88
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
..+.+.++ .. ...+..+|..+||.........+... +.+.++-+|++.
T Consensus 82 ~~~~~~~~----~a---~~~~~~~ViGTTG~~~~~~~~i~~~a-~~ipi~~apN~S 129 (162)
T d1diha1 82 EGTLNHLA----FC---RQHGKGMVIGTTGFDEAGKQAIRDAA-ADIAIVFAANFS 129 (162)
T ss_dssp HHHHHHHH----HH---HHTTCEEEECCCCCCHHHHHHHHHHT-TTSCEEECSCCC
T ss_pred HHHHHHHH----HH---HhccceeEEecCCCcHHHHHHHHHHc-CCCCEEEEcccc
Confidence 87777776 32 23566777788875433222222222 356677778773
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.93 E-value=1.3e-05 Score=63.71 Aligned_cols=91 Identities=23% Similarity=0.366 Sum_probs=58.8
Q ss_pred CCeEEEEccChhhHH-HHHHHHHCCC-eEE-EEeCCcccc--hhHHhcCCcccCC-HHHhh-----cCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNAGY-TVT-VFNRTLSKA--QPLLDIGAHLADS-PHSLA-----SQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~g~-~V~-~~dr~~~~~--~~~~~~g~~~~~~-~~~~~-----~~~DiIi~~vp~~~ 117 (351)
.+||||||+|.+|.. +...|..... +++ +++|+++.. +...+.|+....+ .+++. .+.|+||+|+|...
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~ 83 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA 83 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence 479999999999986 5666655433 554 558886533 3334447665443 33332 35899999997766
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.+.... ......|..+||.+.
T Consensus 84 h~~~~~~------~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 84 HVQNEAL------LRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHH------HHHHCTTCEEEECST
T ss_pred HHHhHHH------HHHHHcCCEEEEccc
Confidence 6654322 112357889999884
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.90 E-value=8.8e-06 Score=66.04 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=73.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CC-----cccCCHHHhhcCCCEEEEecCChhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GA-----HLADSPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~-----~~~~~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
++|.|||+|..+.+++..|.+.| +|++++|+.++.+.+.+. .. ....+.+....++|++|.|+|-+..-
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~ 97 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP 97 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence 57999999999999999998776 999999999988776543 11 11233444556789999999643321
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
..... +. --...+.++.+++|+.-....+ .+.+...+.|..++++
T Consensus 98 ~~~~~-~~-~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~G 142 (177)
T d1nvta1 98 NIDVE-PI-VKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTING 142 (177)
T ss_dssp CCSSC-CS-SCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEECT
T ss_pred ccccc-ch-hhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccCC
Confidence 11000 00 0112345778889987653333 4444555667777754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.89 E-value=1e-05 Score=65.24 Aligned_cols=93 Identities=16% Similarity=0.294 Sum_probs=66.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCC-----------------------------HH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADS-----------------------------PH 100 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~-----------------------------~~ 100 (351)
-||.|||+|..|..=++.....|.+|+++|.++++.+++.+.+..+... +.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998888775333211 12
Q ss_pred HhhcCCCEEEEecCCh-hHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 101 SLASQSDVVFSIVGYP-SDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 101 ~~~~~~DiIi~~vp~~-~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.+.++|+||.++--+ .....++.. ++...+++|.+|||++.
T Consensus 110 ~~l~~aDlVI~talipG~~aP~lit~---~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPAPVLITE---EMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCSCH---HHHTTSCTTCEEEETTG
T ss_pred HHHHhhhhheeeeecCCcccceeehH---HHHHhcCCCcEEEEEee
Confidence 3467899999887211 111111111 33445679999999985
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.86 E-value=3.1e-05 Score=65.72 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=69.4
Q ss_pred CCCCeEEEEccChhhHHH----HHHHHH--CCCeEE-EEeCCcccchhHHhc-C---CcccCCHHHhhc--CCCEEEEec
Q 018694 47 PTNTRIGWIGTGVMGRSM----CAHLLN--AGYTVT-VFNRTLSKAQPLLDI-G---AHLADSPHSLAS--QSDVVFSIV 113 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~i----a~~L~~--~g~~V~-~~dr~~~~~~~~~~~-g---~~~~~~~~~~~~--~~DiIi~~v 113 (351)
+.++||||||+|.+|..+ ...+.+ .+++|+ ++|+++++.+.+.++ + ...+++.+++++ +.|+|++|+
T Consensus 14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t 93 (237)
T d2nvwa1 14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV 93 (237)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence 445899999999865444 344544 346766 789999888777655 3 345689999885 578999999
Q ss_pred CChhHHHHHhhCCCCCcccC--C-CCCcEEEecCC-CChhHHHHHHHHHhcC
Q 018694 114 GYPSDVRHVLLHPSSGALSG--L-RPGGIIVDMTT-SEPSLASELSAAASSK 161 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~--l-~~~~~ii~~s~-~~~~~~~~l~~~~~~~ 161 (351)
|+..+.+.+.. .+... . ....+++.--= .+....+++.+...++
T Consensus 94 p~~~h~~~~~~----al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~ 141 (237)
T d2nvwa1 94 KVPEHYEVVKN----ILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 141 (237)
T ss_dssp CHHHHHHHHHH----HHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCcchhhHHHH----HHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence 77766665554 23221 1 22335554221 2244556666655443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.86 E-value=1.6e-05 Score=57.53 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=50.4
Q ss_pred CCCCCeEEEEccChhh-HHHHHHHHHCCCeEEEEeCCc-ccchhHHhcCCcccC-CHHHhhcCCCEEEEec
Q 018694 46 CPTNTRIGWIGTGVMG-RSMCAHLLNAGYTVTVFNRTL-SKAQPLLDIGAHLAD-SPHSLASQSDVVFSIV 113 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG-~~ia~~L~~~g~~V~~~dr~~-~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~v 113 (351)
...++||-|||.|..| +++|..|.+.|++|+++|+.. ...+.+.+.|+.+.. ...+.+.+.|+||...
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 3456899999999999 668999999999999999863 345667777775533 2333456778776654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=1.8e-05 Score=61.92 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=58.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHH-C--CCeEEEEeCCcccchh----HHhcC------CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLN-A--GYTVTVFNRTLSKAQP----LLDIG------AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~-~--g~~V~~~dr~~~~~~~----~~~~g------~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+||| +|.+|..+|..|.. . ..++.++|..+ ..+. +.... ....++..+.++++|+||++...
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 7999999 59999999998763 3 35899999864 3322 11111 11123334567899999998843
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..++++.. ++..+ .++.+++..+|-
T Consensus 80 ~~k~g~~R~dl~~~N~~i~~~v~~----~i~~~-~p~aivivvtNP 120 (145)
T d2cmda1 80 RRKPGMDRSDLFNVNAGIVKNLVQ----QVAKT-CPKACIGIITNP 120 (145)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHH----HHHHH-CTTSEEEECSSS
T ss_pred cCCCCcchhhHHHHHHHHHHHHHH----HHHhh-CCCcEEEEccCC
Confidence 3 12445555 55544 366777777763
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=2.1e-05 Score=62.72 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=48.9
Q ss_pred CeEEEEccChhhHHHHHH-HHH-C----CCeEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAH-LLN-A----GYTVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~-L~~-~----g~~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
|||+|||+|+.|...+.. +.. . +.++.++|+++++.+...+. .....++..+.++++|+||++..
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 799999999999887744 222 1 35899999998886543321 23456778888999999999985
Q ss_pred C
Q 018694 115 Y 115 (351)
Q Consensus 115 ~ 115 (351)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=1.6e-05 Score=56.59 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=50.0
Q ss_pred CeEEEEccChhhH-HHHHHHHHCCCeEEEEeCCc-ccchhHHhcCCcccC-CHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGR-SMCAHLLNAGYTVTVFNRTL-SKAQPLLDIGAHLAD-SPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~-~ia~~L~~~g~~V~~~dr~~-~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~v 113 (351)
|||-|||.|.+|. ++|..|.+.|++|.++|+.+ +..+.+.+.|+.+.. ...+.+.++|+||...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 7999999999998 59999999999999999875 345677888876642 2333456788877654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=3e-05 Score=62.07 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=47.2
Q ss_pred CeEEEEccChhhHHHH--HHHHHC-C---CeEEEEeCCcccchhHHhc--------C----CcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMC--AHLLNA-G---YTVTVFNRTLSKAQPLLDI--------G----AHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia--~~L~~~-g---~~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~~~~~~~DiIi~ 111 (351)
.||+|||+|..|...+ ..+... . -+++++|.++++++..... + +...++..++++++|+||+
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi 83 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA 83 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence 6999999999987633 333322 1 3899999999886532221 2 3456788899999999999
Q ss_pred ecCC
Q 018694 112 IVGY 115 (351)
Q Consensus 112 ~vp~ 115 (351)
+...
T Consensus 84 tag~ 87 (167)
T d1u8xx1 84 HIRV 87 (167)
T ss_dssp CCCT
T ss_pred CCCc
Confidence 9843
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.73 E-value=5.3e-05 Score=58.83 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=58.3
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCC--eEEEEeCCcc--cch----hHHh---c--CCcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGY--TVTVFNRTLS--KAQ----PLLD---I--GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~--~V~~~dr~~~--~~~----~~~~---~--g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.||+||| +|.+|..+|..+...+. ++.++|++.. ..+ .+.. . ...+.....+.+.++|+|+++...
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~ 80 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence 4899999 69999999999999887 8999997532 221 1111 0 122222223446799999998742
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..++++.. ++..+. ++.+++..+|-
T Consensus 81 ~~~~g~~R~dl~~~N~~I~~~i~~----~i~~~~-p~~i~ivvtNP 121 (142)
T d1o6za1 81 PRQPGQTRIDLAGDNAPIMEDIQS----SLDEHN-DDYISLTTSNP 121 (142)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH----HHHTTC-SCCEEEECCSS
T ss_pred ccccCCchhhHHHHHHHHHHHHHH----HHHhcC-CCceEEEecCh
Confidence 2 12344554 555443 56677777763
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.73 E-value=8.4e-06 Score=65.78 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=65.2
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHH
Q 018694 46 CPTNTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~ 121 (351)
++..+||+|||+|.||...+..|.+.. ..+.+++....+ ...........+.++++. +.|+|++|+|+..+.+-
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~ 81 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY 81 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccc
Confidence 445689999999999999988886532 134444432221 111111223447888875 57999999977776654
Q ss_pred HhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 122 VLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
+.. .+. .++ ++++-- .......+++.+.....+..+
T Consensus 82 ~~~----al~----~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 82 IRQ----FLQ----AGKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp HHH----HHH----TTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred ccc----ccc----cchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 443 222 233 455421 123666777777766655543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.67 E-value=0.00013 Score=54.50 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=75.5
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++|+|||+ |..|..+.+.|.+.||+|+-++.+.+.+ .|...+.++.++-...|++++|+ ++..+.++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~v-p~~~~~~~l~- 74 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVV-PPKVGLQVAK- 74 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECS-CHHHHHHHHH-
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEe-CHHHHHHHHH-
Confidence 46999994 7889999999999999988887654433 37888899999888899999999 7777777777
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++... .-..+++....- .+++.+.+++.|+.++.
T Consensus 75 ---~~~~~-g~k~v~~~~g~~----~~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 75 ---EAVEA-GFKKLWFQPGAE----SEEIRRFLEKAGVEYSF 108 (116)
T ss_dssp ---HHHHT-TCCEEEECTTSC----CHHHHHHHHHHTCEEEC
T ss_pred ---HHHhc-CCceEEeccchh----hHHHHHHHHHcCCEEEc
Confidence 55442 233455543322 34566666667777763
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.0001 Score=57.48 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-CC---eEEEEeCCcccchh--HHhcCCccc-CCHHHhhcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-GY---TVTVFNRTLSKAQP--LLDIGAHLA-DSPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-g~---~V~~~dr~~~~~~~--~~~~g~~~~-~~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
|.||||||+ |.+|..+.+.|.+. .| +++.+..+...-.. +........ ....+...++|++|+|+ +.....
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~-~~~~s~ 79 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQ-GGDYTN 79 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECS-CHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEec-CchHHH
Confidence 679999987 99999999877654 33 56656544332211 121122222 22233467899999999 655555
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.... .+.. ...+.+|||.++
T Consensus 80 ~~~~----~~~~-~g~~~~VID~Ss 99 (146)
T d1t4ba1 80 EIYP----KLRE-SGWQGYWIDAAS 99 (146)
T ss_dssp HHHH----HHHH-TTCCCEEEECSS
T ss_pred HhhH----HHHh-cCCCeecccCCc
Confidence 5555 3332 123457899886
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.66 E-value=2.7e-05 Score=61.57 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeC--CcccchhHHhc----------CCcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNR--TLSKAQPLLDI----------GAHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr--~~~~~~~~~~~----------g~~~~~~~~~~~~~~D 107 (351)
.+|||+|||+ |.+|..++..|+..++ ...+++. +.++.+..... .....++..+.++++|
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 82 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence 3579999997 9999999999997654 1233333 33333222111 2445667788899999
Q ss_pred EEEEecCCh---------------hHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 108 VVFSIVGYP---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 108 iIi~~vp~~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+||++...+ ..++++.. ++..+..++.+++-.+|
T Consensus 83 vViitaG~~~~pg~~r~dl~~~N~~i~~~~~~----~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGR----ALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHHSCTTCEEEECSS
T ss_pred EEEeecCcCCCCCCcHHHHHHHHHHHHHHHHH----HHHHhCCCCcEEEEecC
Confidence 999988322 12445555 55555556777776776
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=0.00014 Score=58.48 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=56.0
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-----C--CcccCCHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-----G--AHLADSPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
|+||+|+|+ |..|.-+.+.|.+..+ ++..+..+...-+.+.+. + .....+.++...++|++|+|+|....
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s- 79 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS- 79 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-
Confidence 789999976 9999999999987543 555443221211222111 1 11234566666789999999966554
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+... . ..+..|||+|.-
T Consensus 80 ~~~~~----~-----~~~~~VIDlSad 97 (176)
T d1vkna1 80 YDLVR----E-----LKGVKIIDLGAD 97 (176)
T ss_dssp HHHHT----T-----CCSCEEEESSST
T ss_pred HHHHH----h-----hccceEEecCcc
Confidence 44444 2 256789999974
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.64 E-value=4e-05 Score=60.52 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=60.0
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chhHHh---c-------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQPLLD---I-------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~~~~---~-------g~~~~~~~~~~~~~~Di 108 (351)
+|||+|||+ |.+|..++..|+..+. ++.++|.+... .+.+.- . .....++..+.++++|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 589999995 9999999999986442 56777766432 222211 1 24456677888999999
Q ss_pred EEEecCCh---------------hHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYP---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+ ..++++.. .+..+..+..+++..+|
T Consensus 83 VVitag~~~~~g~sr~dll~~N~~i~k~~~~----~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 83 AILVGSMPRRDGMERKDLLKANVKIFKCQGA----ALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp EEECCSCCCCTTCCTTTTHHHHHHHHHHHHH----HHHHHSCTTCEEEECSS
T ss_pred EEEecccCCCCCCchhHHHHHhHHHHHHHHH----HHHhhCCCceEEEEecC
Confidence 99988432 22445555 55444444544555555
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.62 E-value=3.1e-05 Score=65.08 Aligned_cols=109 Identities=9% Similarity=0.049 Sum_probs=77.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|-|.|++|..+|+.|.+.|..|++.|.+.+.++.+... |....+..+-.-.+||+++-|--...-.++.+.
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~~~---- 115 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIP---- 115 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBSTTHHH----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccccccccChHHhh----
Confidence 689999999999999999999999999999998888776654 655554333334589999998833332233333
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
++ +-++|+...|..+.+. +..+.+.++|+.|++-
T Consensus 116 ~l-----~ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iPD 149 (230)
T d1leha1 116 QL-----KAKVIAGSADNQLKDP-RHGKYLHELGIVYAPD 149 (230)
T ss_dssp HC-----CCSEECCSCSCCBSSH-HHHHHHHHHTCEECCH
T ss_pred cc-----CccEEEecccCCCCCc-hHHHHHHhhCcEEEee
Confidence 33 3458888886645433 4456677789888754
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.60 E-value=4e-05 Score=59.79 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC---eEEEEeCCcccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY---TVTVFNRTLSKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~---~V~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.|||+|||+ |..|..+.+.|.+.+| ++..+..+...-+.+... .........+...++|++|+|+ +.....+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~-p~~~s~~~ 80 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAA-AAEVSRAH 80 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECS-CHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecC-Ccchhhhh
Confidence 489999987 9999999999987666 566553332221111111 1222222234456899999999 55555555
Q ss_pred hhCCCCCcccCCCCCcEEEecCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. .+ ..++..|||.++-
T Consensus 81 ~~----~~---~~~g~~VID~Ss~ 97 (144)
T d2hjsa1 81 AE----RA---RAAGCSVIDLSGA 97 (144)
T ss_dssp HH----HH---HHTTCEEEETTCT
T ss_pred cc----cc---ccCCceEEeechh
Confidence 54 33 3478899998864
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00022 Score=56.95 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=64.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcc-----cCCHHHhh--------cCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHL-----ADSPHSLA--------SQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~--------~~~DiIi~~vp~ 115 (351)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+..++.|... ..+..+.. ..+|+||.|++.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence 479999999999999999999998 7999999999988887777532 12333222 258999999977
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+..++..+. .+.++..++....
T Consensus 108 ~~~~~~a~~--------~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 108 EASIQAGIY--------ATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHHHHH--------HSCTTCEEEECSC
T ss_pred chhHHHHHH--------HhcCCCEEEEEec
Confidence 666666665 2345666665554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.59 E-value=0.0001 Score=58.85 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=63.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-------CCHHHh---h-----cCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-------DSPHSL---A-----SQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~---~-----~~~DiIi~~vp 114 (351)
.+|.|+|+|.+|...+..+...|.+|+++++++++.+..++.|.... .+..+. + ..+|+||.|+.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g 107 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG 107 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCC
Confidence 57999999999999999999999999999999999888877664221 111211 1 24799999996
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+..+...++ .+.++..++..+.
T Consensus 108 ~~~~~~~a~~--------~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 108 NEKCITIGIN--------ITRTGGTLMLVGM 130 (170)
T ss_dssp CHHHHHHHHH--------HSCTTCEEEECSC
T ss_pred ChHHHHHHHH--------HHhcCCceEEEec
Confidence 6666666654 2345666665554
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.58 E-value=0.00095 Score=47.98 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHH
Q 018694 214 KGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICL 293 (351)
Q Consensus 214 ~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~ 293 (351)
.|...|++.|.+.+..+.+++|...+|++.|++..++.+.+....... ..+. +...|+.-.+..||...++
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~-------~~~~--~pg~g~GG~ClpKD~~al~ 73 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIG-------MHYN--NPSFGYGGYSLPKDTKQLL 73 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTC-------SSSC--CCCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccC-------Cccc--cCCCCcccccCcccHHHHH
Confidence 578899999999999999999999999999999999988776554211 1111 1224556677899999884
Q ss_pred HHHHhcCCCCcHHHHHHHHHHH
Q 018694 294 KECQNMGLALPGLALAQQLYLS 315 (351)
Q Consensus 294 ~~a~~~gv~~p~~~~~~~l~~~ 315 (351)
+.+.|++.++++++.+.-..
T Consensus 74 --~~~~~~~~~ll~~~~~~N~~ 93 (98)
T d1dlja1 74 --ANYNNIPQTLIEAIVSSNNV 93 (98)
T ss_dssp --HHHTTSSCSHHHHHHHHHHH
T ss_pred --HHhcCCCcHHHHHHHHHHHh
Confidence 56779999999998776654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.58 E-value=9.1e-05 Score=59.34 Aligned_cols=66 Identities=15% Similarity=0.055 Sum_probs=44.6
Q ss_pred CeEEEEccChhhH--HHHHHHHHCC----CeEEEEeCCccc--chhHH--------hcC----CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGR--SMCAHLLNAG----YTVTVFNRTLSK--AQPLL--------DIG----AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~--~ia~~L~~~g----~~V~~~dr~~~~--~~~~~--------~~g----~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|+.|. .++..+.... -+++++|+++++ .+.+. +.+ +...++..+.++++|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 7999999998774 3444444321 389999998754 22211 112 23456778888999999
Q ss_pred EEecCC
Q 018694 110 FSIVGY 115 (351)
Q Consensus 110 i~~vp~ 115 (351)
|++...
T Consensus 82 v~ta~~ 87 (169)
T d1s6ya1 82 TTQFRV 87 (169)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999953
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.0002 Score=54.07 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHHHH----hcCCC-Cchhhhhhh
Q 018694 214 KGQFAKLANQITIAT------------------TMVGLVEGMVYAHKAGLNV--ELFLNAI----STGAA-GSKSLDLHG 268 (351)
Q Consensus 214 ~a~~~kl~~n~~~~~------------------~~~~~~Ea~~la~~~Gi~~--~~~~~~~----~~~~~-~s~~~~~~~ 268 (351)
...|.|++.|...+. ...++.|+..++++.|++. +...+.+ ..... .+.+ .
T Consensus 4 ~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~~~~~~sSM----~ 79 (124)
T d1ks9a1 4 AELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSM----L 79 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHH----H
T ss_pred HHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccCCCCChH----H
Confidence 456667776665543 5567889999999998665 3322222 22211 1111 1
Q ss_pred hhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 269 SRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
..+.+|... .++.+. +++++.|+++|+++|+++.++++++....
T Consensus 80 qD~~~gr~t---Eid~i~---G~vv~~a~~~gi~tP~~~~l~~lik~~E~ 123 (124)
T d1ks9a1 80 QDIRALRHT---EIDYIN---GFLLRRARAHGIAVPENTRLFEMVKRKES 123 (124)
T ss_dssp HHHHTTCCC---SGGGTH---HHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcc---hHHHHH---HHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Confidence 122222222 344444 89999999999999999999999876543
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.57 E-value=0.00012 Score=63.71 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhhhhcccCCCCCccchhhHH--
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHGSRILKRDFEPGFFVNHFV-- 286 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-- 286 (351)
|+++.+||++|.+..+.+++++|++.++++ .|++.+++.++.. .+...++.++.....+...+-...+.++.+.
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~ 80 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS 80 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence 789999999999999999999999998876 5899988877755 4556788888777665444432222222221
Q ss_pred ---H-HHHHHHHHHHhcCCCCcHHHHHH
Q 018694 287 ---K-DLGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 287 ---k-d~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
| .-.+.++.|-+.|+|+|++..+.
T Consensus 81 a~~kGTG~Wt~~~Al~lgvp~p~I~~Av 108 (297)
T d2pgda1 81 AGQKGTGKWTAISALEYGVPVTLIGEAV 108 (297)
T ss_dssp CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccCCCchHHHHHHHHHcCCCchHHHHHH
Confidence 1 13589999999999999876654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=4.3e-05 Score=54.83 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=31.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+||.|+|+|..|.+.|+.|.+.|++|+++|.+..
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 5799999999999999999999999999997643
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.52 E-value=0.00031 Score=61.22 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc---C-CCCchhhhhhhhhcccCCCCCccchhhHH--
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIST---G-AAGSKSLDLHGSRILKRDFEPGFFVNHFV-- 286 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~---~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-- 286 (351)
|+++++||++|.+..+.+++++|++.+.+..|.+.+++.++... + ...|+.++.+...+...+-..++-++.+.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d~ 80 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDR 80 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhccc
Confidence 78999999999999999999999999989999999877777543 3 35778887776654443322222222221
Q ss_pred ---H-HHHHHHHHHHhcCCCCcHHHHHH
Q 018694 287 ---K-DLGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 287 ---k-d~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
| .-.+.++.+-+.|+|+|++..+.
T Consensus 81 a~~kGTG~Wt~~~al~~gvp~p~i~~Av 108 (300)
T d1pgja1 81 IGSKGTGLWSAQEALEIGVPAPSLNMAV 108 (300)
T ss_dssp CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence 2 23488999999999999776554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.52 E-value=0.00018 Score=57.68 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=47.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC-CeEE-EEeCCcccc-hhHHhc------------------CCcccCCHHHhhcCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG-YTVT-VFNRTLSKA-QPLLDI------------------GAHLADSPHSLASQS 106 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g-~~V~-~~dr~~~~~-~~~~~~------------------g~~~~~~~~~~~~~~ 106 (351)
|++||||.|+|.+|+.+.+.+.... .+|+ +.|.++... ..+... +.....+..+...++
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV 80 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence 4589999999999999999998654 4544 556654332 112211 334444556666678
Q ss_pred CEEEEecCChhHHHH
Q 018694 107 DVVFSIVGYPSDVRH 121 (351)
Q Consensus 107 DiIi~~vp~~~~~~~ 121 (351)
|+|+.|+|.....+.
T Consensus 81 DvViEcTG~f~~~~~ 95 (172)
T d2czca2 81 DIIVDATPGGIGAKN 95 (172)
T ss_dssp SEEEECCSTTHHHHH
T ss_pred CEEEECCCCCCCHHH
Confidence 888888866554443
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.50 E-value=0.00013 Score=58.80 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=49.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEEEE-eCCcccchh------------------HHhcCCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVTVF-NRTLSKAQP------------------LLDIGAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~-dr~~~~~~~------------------~~~~g~~~~~~~~~~~~~~Di 108 (351)
|-||||.|+|.+|+.+.+.+.+.+ .+|+.+ |+++..... +.+.++.+..+.++...++|+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDi 80 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI 80 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCE
Confidence 569999999999999999999764 465544 555432111 122245555666777777889
Q ss_pred EEEecCChhHHH
Q 018694 109 VFSIVGYPSDVR 120 (351)
Q Consensus 109 Ii~~vp~~~~~~ 120 (351)
||.|+|.....+
T Consensus 81 ViecTG~f~~~e 92 (178)
T d1b7go1 81 VVDTTPNGVGAQ 92 (178)
T ss_dssp EEECCSTTHHHH
T ss_pred EEECCCCcCCHH
Confidence 999987654443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.48 E-value=0.00035 Score=53.82 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
.+|+|||+ +..|..+.+.|.+.||+|+.++...+.+ .|...+.++.++-...|++++++ ++..+.++++
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~v-p~~~~~~~~~- 92 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFV-KPKLTMEYVE- 92 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECS-CHHHHHHHHH-
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEe-CHHHHHHHHH-
Confidence 57999996 5799999999999999988887654322 36788899999888999999999 8888888887
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
++.. +....+++..+.- .++..+.+.+.|+.++
T Consensus 93 ---e~~~-~g~k~v~~~~G~~----~ee~~~~a~~~gi~vi 125 (139)
T d2d59a1 93 ---QAIK-KGAKVVWFQYNTY----NREASKKADEAGLIIV 125 (139)
T ss_dssp ---HHHH-HTCSEEEECTTCC----CHHHHHHHHHTTCEEE
T ss_pred ---HHHH-hCCCEEEEecccc----CHHHHHHHHHCCCEEE
Confidence 6554 2334444433322 2355666666777776
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.48 E-value=0.00019 Score=55.80 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=53.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CC---eEEEEeCCcc--cchhHHhcCCcc-cCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GY---TVTVFNRTLS--KAQPLLDIGAHL-ADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~---~V~~~dr~~~--~~~~~~~~g~~~-~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
|||||||+ |..|..+.+.|.+. .| ++..+..+.. +.-.+....... .....+..+++|++|+|+ +.....+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~al-p~~~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQ-GGSYTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECS-CHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEec-CchHHHH
Confidence 79999976 99999999887754 34 4554433221 111111111111 112234468899999999 6555555
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.. .+.. ...+.+|||+|+-
T Consensus 80 ~~~----~l~~-~g~~~~VIDlSsd 99 (147)
T d1mb4a1 80 VYP----ALRQ-AGWKGYWIDAAST 99 (147)
T ss_dssp HHH----HHHH-TTCCSEEEESSST
T ss_pred HhH----HHHH-cCCceEEEeCCcc
Confidence 665 4432 1234579999873
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.41 E-value=0.00032 Score=53.90 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=77.5
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
.+|+|||+ +..|..+.+.|.+.|+++..+..++... .+ .|...+.++.++-...|++++|+ ++..+.++++
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~-~i--~g~~~~~~l~~i~~~iD~v~v~~-p~~~v~~~v~- 88 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE-EL--FGEEAVASLLDLKEPVDILDVFR-PPSALMDHLP- 88 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS-EE--TTEECBSSGGGCCSCCSEEEECS-CHHHHTTTHH-
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc-ee--eceecccchhhccCCCceEEEec-cHHHHHHHHH-
Confidence 46999997 7899999999999999999998765321 11 36778889999888899999999 7887777777
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++.. +..+.+++....- .+++.+.+.+.|+.++.
T Consensus 89 ---~~~~-~g~k~i~~q~G~~----~~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 89 ---EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (136)
T ss_dssp ---HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred ---HHHh-hCCCeEEEecCcc----CHHHHHHHHHcCCEEEc
Confidence 5543 2344566643332 24566777777888773
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.38 E-value=0.00053 Score=50.36 Aligned_cols=100 Identities=11% Similarity=-0.032 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchh--hhhhhhhcccCCCCCccchhhHHHHHH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKS--LDLHGSRILKRDFEPGFFVNHFVKDLG 290 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~kd~~ 290 (351)
|.+..+||+...+..++..++.|++..+++.|+.. .+.+.+..+....+. .+.+.+++....++ +..++.
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~-~l~~~l~~s~~~~~~~~~~~~v~~~~~ha~R-------r~~EM~ 72 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEE-DVLEMLEYTEGNDFRESAISRLKSSCIHARR-------RYEEMK 72 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTSCSSTHHHHHHHHHHHHHTHHH-------HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHcCCccHHHHHHHHhcCCcchhhH-------HHHHHH
Confidence 67899999999999999999999999999999995 555666655543221 22233333322222 456778
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC
Q 018694 291 ICLKECQNMGLALPGLALAQQLYLSLKAHGE 321 (351)
Q Consensus 291 ~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~ 321 (351)
.+.++.++ ++++.+.+++.+++++..+.+.
T Consensus 73 Eia~tl~~-~l~P~m~~a~a~~~~~~~d~~~ 102 (112)
T d1i36a1 73 EVQDMLAE-VIDPVMPTCIIRIFDKLKDVKV 102 (112)
T ss_dssp HHHHHHHT-TSCCSHHHHHHHHHHHHCC---
T ss_pred HHHHHHHH-hCCchHHHHHHHHHHHHHhcCC
Confidence 88899888 4888899999999998876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.35 E-value=0.00015 Score=58.65 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=39.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|+|+|.+|......+...|. +|++.++++++.+..++.|.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 579999999999999999999997 79999999999888777664
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.33 E-value=0.00026 Score=53.84 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=57.0
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|+|||+ |.+|..+.++|.+.| .+|+.++...+.+ .|...+.++.|+-...|++++++ ++..+.++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~v-p~~~~~~~~~ 82 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVV-PKRFVKDTLI 82 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECS-CHHHHHHHHH
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEec-ChHHhHHHHH
Confidence 57999997 899999999998765 5788887764433 36888899999888999999999 7888888887
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.32 E-value=0.00031 Score=56.17 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEE-EEeCCcccc-hhHHh------------------cCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVT-VFNRTLSKA-QPLLD------------------IGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~-~~dr~~~~~-~~~~~------------------~g~~~~~~~~~~~~~~D 107 (351)
|.||||-|+|.+|+.+.+.+...+ .+|+ +.++++... ..+.. .++....+..++..++|
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD 80 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD 80 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence 679999999999999999988765 3555 445554321 11111 13444445566667889
Q ss_pred EEEEecCChhHHH
Q 018694 108 VVFSIVGYPSDVR 120 (351)
Q Consensus 108 iIi~~vp~~~~~~ 120 (351)
+||.|+|.....+
T Consensus 81 vViEcTG~f~~~~ 93 (171)
T d1cf2o1 81 IVIDCTPEGIGAK 93 (171)
T ss_dssp EEEECCSTTHHHH
T ss_pred EEEEccCCCCCHH
Confidence 9999997765544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00023 Score=52.60 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=36.5
Q ss_pred CCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 43 DPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 43 ~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
.|.++...||||||.|.+|..++....+.|++|.++|.+++.
T Consensus 5 ~~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 5 TALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CTTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 344556689999999999999999999999999999988653
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0006 Score=53.23 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=52.0
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch----hHHhcCCccc-C---CHH---H-hhcCCCEEEEecCChhH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ----PLLDIGAHLA-D---SPH---S-LASQSDVVFSIVGYPSD 118 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~----~~~~~g~~~~-~---~~~---~-~~~~~DiIi~~vp~~~~ 118 (351)
.|-|+|+|.+|..+++.|.+.|++|++++.++++.. .+...|+.+. . +.+ + -++++|.+|++++.+..
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence 599999999999999999999999999999886533 3333354321 1 222 1 13579999999966555
Q ss_pred HHHHhh
Q 018694 119 VRHVLL 124 (351)
Q Consensus 119 ~~~v~~ 124 (351)
...++.
T Consensus 85 n~~~~~ 90 (153)
T d1id1a_ 85 NAFVVL 90 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.23 E-value=0.00021 Score=57.36 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=60.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-----CCHHHhh------cCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLA------SQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~------~~~DiIi~~vp~~~ 117 (351)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+..++.|...+ .+..+.+ ...|+||.|++.+.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~ 108 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSE 108 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTT
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHH
Confidence 469999999999999999988887 69999999998887777774321 1222222 12788888886566
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.+++.+. - ++++..++.+.
T Consensus 109 ~~~~a~~----~----~~~~G~iv~~G 127 (174)
T d1jqba2 109 TLSQAVK----M----VKPGGIISNIN 127 (174)
T ss_dssp HHHHHHH----H----EEEEEEEEECC
T ss_pred HHHHHHH----H----HhcCCEEEEEe
Confidence 5665554 2 24555666554
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.22 E-value=0.0019 Score=49.22 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=65.6
Q ss_pred eEEEEc-cChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHHhcCCcccCCHHHh-hcCCCEEEEecCChhHHHHHhhCC
Q 018694 51 RIGWIG-TGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSL-ASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
||+|+| .|.||..+++.+.+ .++++. .+|+.. +.... ..++|+||-.+ .|..+.+.++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS-~p~~~~~~~~-- 62 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFT-HPDVVMGNLE-- 62 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECC-CTTTHHHHHH--
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcc-cHHHHHHHHH--
Confidence 799999 59999999998765 456655 445431 11111 24689999999 7777777776
Q ss_pred CCCcccCCCCCcEEEecCCCCh-hHHHHHHHHH-hcCCCcEEeccCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTSEP-SLASELSAAA-SSKNCSAIDAPVSG 172 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~-~~~~~~~v~~pv~~ 172 (351)
... ..+..+|..+||.. ...+.+.+.+ ..+.+.++-+|++.
T Consensus 63 --~~~---~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfS 105 (135)
T d1yl7a1 63 --FLI---DNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFT 105 (135)
T ss_dssp --HHH---HTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCG
T ss_pred --HHH---hcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCcc
Confidence 332 45667777888764 3344555543 34577788888774
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.16 E-value=0.00046 Score=56.10 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=36.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
++|.|.| .|.+|..+++.|++.|.+|++++|+.++.+.+.+
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 5688887 6999999999999999999999999988766654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00061 Score=54.08 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc---CCHHH---hhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA---DSPHS---LASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~---~~~~~---~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|.|+|+|.+|...++.+...|.++++.++++++.+..++.|...+ .+.+. .....|++|.|++.+..+...+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~ 111 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT 111 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHHH
Confidence 57999999999999999988899999999999988877777664321 22222 2245899999996666666666
Q ss_pred hCCCCCcccCCCCCcEEEecC
Q 018694 124 LHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s 144 (351)
. - +.++..++.+.
T Consensus 112 ~----~----l~~~G~iv~~G 124 (168)
T d1uufa2 112 T----L----LKRDGTMTLVG 124 (168)
T ss_dssp T----T----EEEEEEEEECC
T ss_pred H----H----HhcCCEEEEec
Confidence 4 2 34555666554
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.07 E-value=0.00091 Score=53.73 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHC-CCeEEEE-eCCcc--cchhHHhc-----C-----CcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNA-GYTVTVF-NRTLS--KAQPLLDI-----G-----AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~-g~~V~~~-dr~~~--~~~~~~~~-----g-----~~~~~~~~~~~~~~DiIi~~v 113 (351)
|+||+||| .|..|..+.+.|.+. .+++... .++.+ .-+.+... + .....+......++|++|+|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 78999998 599999999999986 4466533 33211 11222111 1 112233444456899999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.....+... .+ ...+..+||++.-
T Consensus 81 -p~~~s~~~~~----~~---~~~~~~vIDlSad 105 (179)
T d2g17a1 81 -AHEVSHDLAP----QF---LQAGCVVFDLSGA 105 (179)
T ss_dssp -CHHHHHHHHH----HH---HHTTCEEEECSST
T ss_pred -cchhHHHHhh----hh---hhcCceeeccccc
Confidence 4444444444 22 2478899999974
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.001 Score=49.06 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=49.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhc-CCcccC--CHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDI-GAHLAD--SPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~-g~~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.||.|||.|.+|..-++.|.+.|.+|++++..... ...+.+. ++.... -.++.+.++++|+.|+.....-..+.
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i~ 90 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVS 90 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHHHHH
Confidence 68999999999999999999999999999876432 2223222 222111 12234567889998884443333343
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.06 E-value=0.00091 Score=53.52 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=62.4
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chhHHh---c-------CCcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQPLLD---I-------GAHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~~~~---~-------g~~~~~~~~~~~~~~D 107 (351)
...||.|+|+ |.+|..++..|++... ++.++|.+... ++.+.- . .....++..+.+.++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 3468999996 9999999999987532 56667765432 222211 1 2455778888999999
Q ss_pred EEEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 108 VVFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 108 iIi~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+||++...+. .++++.. .+..+..++..|+-.+|
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~----~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQGK----ALNAVASKNVKVLVVGN 151 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH----HHHHHSCTTCEEEECSS
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCcEEEEecC
Confidence 9999874331 2445555 55555556776766766
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00032 Score=55.80 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=59.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C-----CHH-HhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D-----SPH-SLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~-----~~~-~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+|.|+|+|.+|...++.+...|.+|+++++++++.+..++.|...+ + +.. ......|+++.|+...... .
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~--~ 106 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI--D 106 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC--C
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc--h
Confidence 58999999999999998888889999999999999988887775321 1 111 2234578898887433211 1
Q ss_pred hhCCCCCcccCCCCCcEEEecC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s 144 (351)
+. .....+.++..++.+.
T Consensus 107 ~~----~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 107 FN----IMPKAMKVGGRIVSIS 124 (168)
T ss_dssp TT----TGGGGEEEEEEEEECC
T ss_pred HH----HHHHHhhccceEEEec
Confidence 11 2333445666666554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.92 E-value=0.0025 Score=50.82 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccC------C-HHHhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLAD------S-PHSLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~------~-~~~~~-----~~~DiIi~~vp~~ 116 (351)
..|.|+|+|.+|...+..+...|. +|+++|+++++++..++.|...+- + .++.. ...|++|.|+..+
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~ 110 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL 110 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCch
Confidence 469999999999999999999985 799999999999888887754321 1 11111 3589999999666
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
....+.+.
T Consensus 111 ~~~~~a~~ 118 (176)
T d1d1ta2 111 ETMIDALA 118 (176)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66665554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00033 Score=48.01 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
|++|||||.|..|..++..-.+-|++|.++|.+++.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 578999999999999999999999999999987543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.90 E-value=0.0026 Score=50.72 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=57.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCC-------HHHhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADS-------PHSLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...+..+...|. .|++.|+++++.+..++.|...+-+ ..... ...|++|.|+..+
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~ 109 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA 109 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccc
Confidence 579999999999999999999998 6888899999988777777543211 11111 3579999999777
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
..+...+.
T Consensus 110 ~~~~~a~~ 117 (174)
T d1e3ia2 110 QTLKAAVD 117 (174)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 77776665
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.022 Score=47.31 Aligned_cols=168 Identities=9% Similarity=0.030 Sum_probs=95.8
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEe-CC-----cc-----cchhHHhc-C-------CcccCCHHHhhc-CCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFN-RT-----LS-----KAQPLLDI-G-------AHLADSPHSLAS-QSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~d-r~-----~~-----~~~~~~~~-g-------~~~~~~~~~~~~-~~D 107 (351)
..||.|=|+|++|...++.|. +.|..|+.++ .+ ++ .+..+.+. + .... +.++... +||
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D 109 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVD 109 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccccccc
Confidence 368999999999999999996 4688877553 32 11 11222221 1 1222 3455544 899
Q ss_pred EEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec--cCCCCchhhccCceeEE
Q 018694 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA--PVSGGDRGAKTGTLAIF 185 (351)
Q Consensus 108 iIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~--pv~~~~~~~~~g~~~~~ 185 (351)
+++-|--...-..+.+. .+ +-++|+...|. |.+.+ ..+.+.++|+.|++- .+.|+..
T Consensus 110 I~~PcA~~~~I~~~~a~----~l-----~~~~I~e~AN~-p~t~~-a~~~L~~rgI~~~PD~~aNaGGVi---------- 168 (234)
T d1b26a1 110 ILVPAALEGAIHAGNAE----RI-----KAKAVVEGANG-PTTPE-ADEILSRRGILVVPDILANAGGVT---------- 168 (234)
T ss_dssp EEEECSCTTCBCHHHHT----TC-----CCSEEECCSSS-CBCHH-HHHHHHHTTCEEECHHHHTTHHHH----------
T ss_pred eeecchhcccccHHHHH----Hh-----hhceEeecCCC-CCCHH-HHHHHHHCCeEEechHHhcCCCee----------
Confidence 99988844433444444 33 34688888887 44433 456677789888854 2222211
Q ss_pred ecCCHHHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 186 AGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 186 ~~g~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
-.-.++.+......|. .+-+.+-+...+...+.+.+..+++.++++.+....+
T Consensus 169 --------~s~~E~~qn~~~~~w~--------~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 221 (234)
T d1b26a1 169 --------VSYFEWVQDLQSFFWD--------LDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYIL 221 (234)
T ss_dssp --------HHHHHHHHHHTTCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred --------eeehhcccccchhccc--------HHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 1111122222221111 1233444444555667778888899999987776554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.89 E-value=0.00086 Score=52.97 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=52.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-----CCHHHhh----cCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-----DSPHSLA----SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~----~~~DiIi~~vp~~~~~~ 120 (351)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+..++.|.... .+..+.+ ...+.+++++..+..+.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~ 108 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFG 108 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchHHH
Confidence 57999999999999999998999999999999999888777764321 1121211 23455566664555555
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
..+.
T Consensus 109 ~~~~ 112 (166)
T d1llua2 109 QAIG 112 (166)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.0014 Score=51.84 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=58.3
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||-+. +|..++..|.+.|..|++++... .+..+...++|++|.+++.+..++.
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~~~i~~------- 98 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQPEMVKG------- 98 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTCBCG-------
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccccccccc-------
Confidence 6899999976 89999999999999999998752 3455667899999999977554331
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++.++||....
T Consensus 99 ---~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 99 ---EWIKPGAIVIDCGIN 113 (170)
T ss_dssp ---GGSCTTCEEEECCCB
T ss_pred ---ccccCCCeEeccCcc
Confidence 346799999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.85 E-value=0.00086 Score=53.53 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=53.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcCCcc-----cCCHHHhhc-----CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHL-----ADSPHSLAS-----QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~~-----~~DiIi~~vp~~~~ 118 (351)
.+|.|+|+|.+|...+..+...|.. |++.++++++.+..++.|... ..+..+.+. ..|+||.|+..+..
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~ 109 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEI 109 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHH
Confidence 5799999999999999998888875 567789998888877776431 122222221 26888888865665
Q ss_pred HHHHhh
Q 018694 119 VRHVLL 124 (351)
Q Consensus 119 ~~~v~~ 124 (351)
++..+.
T Consensus 110 ~~~~~~ 115 (174)
T d1f8fa2 110 LKQGVD 115 (174)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.85 E-value=0.00067 Score=56.91 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=31.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.+||.|||+|-+|.+.|..|+++|++|++++|+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3689999999999999999999999999999863
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00096 Score=52.58 Aligned_cols=72 Identities=28% Similarity=0.376 Sum_probs=57.6
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||-+. +|..++..|.+.|..|++++... .+..+...++|+||.++.++..+.
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~i~-------- 95 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIP-------- 95 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBC--------
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCccccc--------
Confidence 6899999987 89999999999999999997542 355666789999999997765432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
...++++.++||...
T Consensus 96 --~~~vk~g~vvIDvGi 110 (166)
T d1b0aa1 96 --GDWIKEGAIVIDVGI 110 (166)
T ss_dssp --TTTSCTTCEEEECCC
T ss_pred --ccccCCCcEEEecCc
Confidence 134679999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.80 E-value=0.0028 Score=50.46 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCC-------HHHhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADS-------PHSLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+..++.|....-+ .++.. ...|++|.|+..+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 108 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCc
Confidence 579999999999999999988886 6889999999998888877543211 12222 2478999999666
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
....+.+.
T Consensus 109 ~~~~~~~~ 116 (174)
T d1p0fa2 109 ETMMNALQ 116 (174)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 66666655
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.78 E-value=0.00074 Score=57.02 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=33.7
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|..+||.|||+|--|...|..|+++|++|++++++++
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3458999999999999999999999999999999764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.73 E-value=0.0021 Score=54.08 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=68.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEe-CCcc-------cchhHHh---------------c-CCcccCCHHHhh-c
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFN-RTLS-------KAQPLLD---------------I-GAHLADSPHSLA-S 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~d-r~~~-------~~~~~~~---------------~-g~~~~~~~~~~~-~ 104 (351)
.+|.|-|.|++|...|+.|.+.|..|+.++ .+.. ..+.+.+ . +.....+.+++. .
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 111 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL 111 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhccc
Confidence 689999999999999999999999887554 3211 0111111 1 333344455544 4
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+||+++-|-....-..+.+ +.+ +-++|+...|. |.+.+. .+.+.++|+.|++-
T Consensus 112 ~~DIliPcA~~~~I~~~~a--------~~i-~ak~IvegAN~-p~t~~a-~~~L~~rgI~~~PD 164 (242)
T d1v9la1 112 DVDIFVPAAIENVIRGDNA--------GLV-KARLVVEGANG-PTTPEA-ERILYERGVVVVPD 164 (242)
T ss_dssp CCSEEEECSCSSCBCTTTT--------TTC-CCSEEECCSSS-CBCHHH-HHHHHTTTCEEECH
T ss_pred cccEEeecchhccccHHHH--------Hhc-ccCEEEecCCC-CCChhH-HHHHHhCCeEEeCc
Confidence 8999999883332222222 222 45689988887 444433 56777889888854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.0012 Score=52.08 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=39.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+..++.|.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 57999999999999999999999999999999999888777664
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.67 E-value=0.0022 Score=48.24 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=53.0
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-CCH--HHh-----hcCCCEEEEecCChhHHHHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-DSP--HSL-----ASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~~~--~~~-----~~~~DiIi~~vp~~~~~~~v 122 (351)
.|-|+|+|.+|..+++.|. |++|.+++.++++.+.+...|+.+. .++ ++. +.+++.++++++.+.....+
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~ 79 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC 79 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence 4789999999999999984 6788999999998888887775432 221 222 35799999999666555444
Q ss_pred hh
Q 018694 123 LL 124 (351)
Q Consensus 123 ~~ 124 (351)
+.
T Consensus 80 ~~ 81 (129)
T d2fy8a1 80 IL 81 (129)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.64 E-value=0.0012 Score=51.65 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=53.6
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC---eEEEEeCCcccchhHH--hcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY---TVTVFNRTLSKAQPLL--DIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~---~V~~~dr~~~~~~~~~--~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||+|||+ |..|..+.+.|.+..+ ++..+..+...-+.+. ..........++...+.|++++|+| .....+...
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~-~~~s~~~~~ 81 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAG-SSTSAKYAP 81 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSC-HHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccC-ccchhhHHh
Confidence 7999988 9999999999988765 3443432211111111 1112223334455678999999994 444444443
Q ss_pred CCCCCcccCCCCCcEEEecCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. ..++..|||+|+-
T Consensus 82 ----~~---~~~~~~VIDlSsd 96 (154)
T d2gz1a1 82 ----YA---VKAGVVVVDNTSY 96 (154)
T ss_dssp ----HH---HHTTCEEEECSST
T ss_pred ----hh---ccccceehhcChh
Confidence 22 3478899999964
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.53 E-value=0.0012 Score=54.51 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=45.2
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEE--EeCCcccchhHHhc------CCcccCCHHHhhcCCCEEEEec
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTV--FNRTLSKAQPLLDI------GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~--~dr~~~~~~~~~~~------g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.|++|.|.| +|.+|..+++.|.+.|++|.+ ..|++++...+... ...-..+..++++++|.||.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEE
Confidence 478999997 699999999999999987554 46777654433221 0111223345567889888876
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.49 E-value=0.001 Score=56.75 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=31.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|||+|||+|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789999999999999999999999999999874
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.49 E-value=0.0021 Score=47.57 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=32.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
+.||.|||.|.+|.-+|..|.+.|.+|+++.+.+.-
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i 57 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 57 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence 368999999999999999999999999999987653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.42 E-value=0.0026 Score=53.93 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=53.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
+||++| |.+.+|.++|+.|++.|++|++.+|++++++.+.++ ..+. ..+++.+.+ .+..++++++.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------i~~~--g~~~~~~~~Dv~~~~~v~~~~~- 70 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQA--GGHAVAVKVDVSDRDQVFAAVE- 70 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHHH-
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHHH-
Confidence 478877 557899999999999999999999998877665432 1110 122333332 24556666666
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
.+.....+=+++|+..
T Consensus 71 ---~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 71 ---QARKTLGGFDVIVNNA 86 (255)
T ss_dssp ---HHHHHTTCCCEEEECC
T ss_pred ---HHHHHhCCccEEEecc
Confidence 5555444555666654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0035 Score=57.28 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=51.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-------------------------CC-------ccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-------------------------GA-------HLA 96 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-------------------------g~-------~~~ 96 (351)
+||.|||+|.+|+.+++.|+..|. +++++|.+.=....+..+ .+ .+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 117 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQ 117 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSCGG
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecccc
Confidence 589999999999999999999999 799998763111111110 11 112
Q ss_pred CCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 97 DSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 97 ~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+..++.+++.|+||.|+ .....+..+.
T Consensus 118 ~~~~~~~~~~DlVi~~~-Dn~~aR~~in 144 (426)
T d1yovb1 118 DFNDTFYRQFHIIVCGL-DSIIARRWIN 144 (426)
T ss_dssp GBCHHHHTTCSEEEECC-SCHHHHHHHH
T ss_pred chHHHHHHhcchheecc-CcHHHHHHHH
Confidence 23356678899999999 6666655554
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.0023 Score=47.77 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=32.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+.|+.|||.|.+|.-+|..|.+.|.+|+++.+++.
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 36899999999999999999999999999998764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.40 E-value=0.0066 Score=48.64 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=44.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-------C-CcccCCHHHhhcCCCEEEEecCChhH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-------G-AHLADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-------g-~~~~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
..||+|||+ |..|..+.+.|.+..+ ++.....+...-+.+.+. . .......++...++|++|+|+|...
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~- 83 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT- 83 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH-
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccch-
Confidence 479999976 9999999999987533 555443222211222111 1 1112223344578999999995544
Q ss_pred HHHHhh
Q 018694 119 VRHVLL 124 (351)
Q Consensus 119 ~~~v~~ 124 (351)
..+...
T Consensus 84 s~~~~~ 89 (183)
T d2cvoa1 84 TQEIIK 89 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444555
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.004 Score=52.82 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=55.1
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|+.|++++|++++++.+.++ ..+.-....++.+.+ .++.++++++.
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~~v~- 81 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILSMFS- 81 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHHHHH-
Confidence 467777 679999999999999999999999998887765442 111001123333322 35667777776
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.....+=+++|+...
T Consensus 82 ---~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 82 ---AIRSQHSGVDICINNAG 98 (257)
T ss_dssp ---HHHHHHCCCSEEEECCC
T ss_pred ---HHHHhcCCCCEEEeccc
Confidence 55554444456666543
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.37 E-value=0.048 Score=45.28 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeEEEE-eCCcc----------cchhHHhc--------CCcccCCHHHhh-cCCCE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTVTVF-NRTLS----------KAQPLLDI--------GAHLADSPHSLA-SQSDV 108 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V~~~-dr~~~----------~~~~~~~~--------g~~~~~~~~~~~-~~~Di 108 (351)
++|+|-|.|++|..+++.|.+ .|..|+.+ |.+-. .+...... +.... +.+++. .+||+
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~DI 111 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDV 111 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccccccE
Confidence 689999999999999999975 58876544 44311 11111111 12222 344443 58999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
++-|.-...-.++.+. + + .-++|+...|. |.+.+ -.+.+.++++.|++-
T Consensus 112 l~PcA~~~~I~~~~a~----~----i-~ak~I~e~AN~-p~t~e-a~~~L~~rgI~~iPD 160 (239)
T d1gtma1 112 LAPAAIEEVITKKNAD----N----I-KAKIVAEVANG-PVTPE-ADEILFEKGILQIPD 160 (239)
T ss_dssp EEECSCSCCBCTTGGG----G----C-CCSEEECCSSS-CBCHH-HHHHHHHTTCEEECH
T ss_pred EeeccccccccHHHHH----h----c-cccEEEecCCC-CCCHH-HHHHHHHCCCEEecc
Confidence 9998833222222222 2 2 44688888887 44443 456677889888854
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0022 Score=51.40 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
...||+|||.|..|..-|..|+++||+|+++++++.-
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 3479999999999999999999999999999998654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.32 E-value=0.0028 Score=53.74 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=54.8
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
||++| |.+.+|.++|+.|++.|++|++++|++++++...++ +.+. ..++..+.+ .+..+++.++.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~v~~~~~-- 71 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREA--GVEADGRTCDVRSVPEIEALVA-- 71 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeecCCHHHHHHHHH--
Confidence 78888 668899999999999999999999998877665442 1111 122333333 25666777776
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=.++|+...
T Consensus 72 --~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 72 --AVVERYGPVDVLVNNAG 88 (257)
T ss_dssp --HHHHHTCSCSEEEECCC
T ss_pred --HHHHHhCCCCEEEeccc
Confidence 55554445556776543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0038 Score=52.54 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=55.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
|+.+| |.+.+|..+|..|++.|++|++++|++++++.+.++ ..+ ...++..+.+ .+.+.++.+++
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dvs~~~~v~~~~~-- 76 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKG--LGAKVHTFVVDCSNREDIYSSAK-- 76 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHHHH--
Confidence 56666 457799999999999999999999999887766543 111 1223343333 35566677776
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.....+-.++|+...
T Consensus 77 --~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 77 --KVKAEIGDVSILVNNAG 93 (244)
T ss_dssp --HHHHHTCCCSEEEECCC
T ss_pred --HHHHHcCCCceeEeecc
Confidence 66555556667776554
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.25 E-value=0.0038 Score=47.51 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=64.6
Q ss_pred CeEEEEccC----------hhhHHHHHHHHHCCCeEEEEeCCcccc-------hhHHh----cCCcccCCHHHhhcCCCE
Q 018694 50 TRIGWIGTG----------VMGRSMCAHLLNAGYTVTVFNRTLSKA-------QPLLD----IGAHLADSPHSLASQSDV 108 (351)
Q Consensus 50 ~kI~iIG~G----------~mG~~ia~~L~~~g~~V~~~dr~~~~~-------~~~~~----~g~~~~~~~~~~~~~~Di 108 (351)
.||+|+|.- .-...++..|.+.|.+|.+||..-+.. +.+.. .+....+++.+++.++|+
T Consensus 14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ 93 (136)
T d1mv8a3 14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDV 93 (136)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSE
T ss_pred CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceE
Confidence 589999974 567889999999999999999632211 11111 134567899999999999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP 148 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~ 148 (351)
||+++ +....+++.. . +.++++|+|+-+..+
T Consensus 94 ivi~t-~h~~f~~l~~----~----~~~~~~I~D~~~~~~ 124 (136)
T d1mv8a3 94 LVLGN-GDELFVDLVN----K----TPSGKKLVDLVGFMP 124 (136)
T ss_dssp EEECS-CCGGGHHHHH----S----CCTTCEEEESSSCCS
T ss_pred EEEEe-CCHHHHHHHH----H----hcCCCEEEECCCCCC
Confidence 99999 5555555554 3 346789999887643
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0032 Score=46.47 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=32.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.||.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 6899999999999999999999999999999764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.23 E-value=0.0032 Score=47.00 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+.|+.|||.|.+|.-+|..|.+.|.+|+++.++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 368999999999999999999999999999876
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.22 E-value=0.008 Score=51.58 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=67.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEe-CC----------cccchhHHhcCCcc------cCCHHHhh-cCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFN-RT----------LSKAQPLLDIGAHL------ADSPHSLA-SQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~d-r~----------~~~~~~~~~~g~~~------~~~~~~~~-~~~DiIi~ 111 (351)
++|.|=|.|++|...|+.|.+.|..|+.++ .+ .+.+..+....-.. .-+.+++. .+||+++-
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliP 116 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIP 116 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEee
Confidence 689999999999999999999999877553 22 22233333221111 11122333 48999998
Q ss_pred ecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 112 IVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 112 ~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
|.-...-..+.+. . + .-++|+...|+ |.+.+ -.+.+.++|+.|++.
T Consensus 117 aA~~~~I~~~~a~----~----l-~ak~I~EgAN~-P~t~e-A~~~L~~~gI~viPD 162 (293)
T d1hwxa1 117 AASEKQLTKSNAP----R----V-KAKIIAEGANG-PTTPQ-ADKIFLERNIMVIPD 162 (293)
T ss_dssp CSSSSCBCTTTGG----G----C-CCSEEECCSSS-CBCHH-HHHHHHHTTCEEECH
T ss_pred ccccccccHHHHH----H----H-hhCEEeccCCC-CCCcc-hHHHHHHCCCEEeCh
Confidence 8833222222222 2 2 45689998888 44444 456677889988864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.22 E-value=0.0032 Score=47.02 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
+.++.|||.|.+|.-+|..|.+.|.+|+++.|++..
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 368999999999999999999999999999998654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.19 E-value=0.0024 Score=51.26 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=31.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~ 84 (351)
.||+|||+|..|...|..|++.|+ +|+++++++.-
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 689999999999999999999999 59999998643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.18 E-value=0.017 Score=45.52 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=54.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccC-------CHHHhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLAD-------SPHSLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~-------~~~~~~-----~~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...+..++..|. .|++.++++++.+...+.|....- ...+.. ...|++|.|+..+
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~ 109 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCch
Confidence 579999999999999999998885 788999999998888777643211 111211 2478888888665
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
...++.+.
T Consensus 110 ~~~~~a~~ 117 (176)
T d2jhfa2 110 DTMVTALS 117 (176)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 55555554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.17 E-value=0.0023 Score=55.35 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
..||.|||+|..|...|..|+++|++|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4699999999999999999999999999999874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.15 E-value=0.003 Score=46.76 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=31.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.||.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 6899999999999999999999999999998754
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0084 Score=50.30 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=66.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhh--cCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLA--SQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~--~~~DiIi~~vp~~~~ 118 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |-..+....+.+ -++++-+.+.+....
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~~ 110 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLD 110 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhhh
Confidence 579999999999999999999999 799998764333333222 211111111111 246677777643222
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
-..... .+....+++++... ......+.+.....++.++.+...
T Consensus 111 ~~~~~~--------~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~ 154 (247)
T d1jw9b_ 111 DAELAA--------LIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAI 154 (247)
T ss_dssp HHHHHH--------HHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hccccc--------cccccceeeeccch-hhhhhhHHHHHHHhCCCccccccc
Confidence 221111 12255678887654 444445555555567777765443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.11 E-value=0.0047 Score=45.75 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=32.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+.|+.|||.|.+|.-+|..|++.|.+|+++.+++.
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 347899999999999999999999999999988754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.07 E-value=0.0066 Score=52.31 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=34.2
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
|++|| |+|.+|.++|+.|++.|++|++.+|+.++.+...
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 77777 7899999999999999999999999987766544
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.05 E-value=0.0033 Score=53.15 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhh
Q 018694 49 NTRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~ 124 (351)
.-||++| |.+.+|.++|+.|++.|++|++++|++++++.+.++ ..+. ..++..+.+ .+..++++++.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvt~~~~v~~~~~ 79 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKSF--GYESSGYAGDVSKKEEISEVIN 79 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHTT--TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHHH
Confidence 3578888 558999999999999999999999998877665443 1110 112333332 35667777777
Q ss_pred CCCCCcccCCCCCcEEEecC
Q 018694 125 HPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 80 ----~~~~~~g~iDilvnna 95 (251)
T d2c07a1 80 ----KILTEHKNVDILVNNA 95 (251)
T ss_dssp ----HHHHHCSCCCEEEECC
T ss_pred ----HHHHhcCCceeeeecc
Confidence 5555444555666643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.04 E-value=0.0037 Score=49.50 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=58.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc----CC-HHHhh-----cCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA----DS-PHSLA-----SQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~----~~-~~~~~-----~~~DiIi~~vp~~~~ 118 (351)
.+|.|+|+|.+|...+..+...|. .|++.++++++.+.+++.|...+ .+ .++.. ...|++|.|+.....
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~ 113 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQAT 113 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchH
Confidence 479999999999999988877665 67888999988888877764211 11 12222 237888888855555
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
++..+. .+.++..++.+.
T Consensus 114 ~~~a~~--------~l~~~G~iv~~G 131 (172)
T d1h2ba2 114 VDYTPY--------LLGRMGRLIIVG 131 (172)
T ss_dssp HHHGGG--------GEEEEEEEEECC
T ss_pred HHHHHH--------HHhCCCEEEEEe
Confidence 665554 234555555444
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.02 E-value=0.0052 Score=45.79 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
..||.|||.|.+|.-+|..|.+.|++|+++++.+.
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 36899999999999999999999999999988753
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.99 E-value=0.0044 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
.||.|||.|.+|.-+|..|.+.|.+|+++++++.-
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL 65 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence 58999999999999999999999999999988653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.97 E-value=0.006 Score=54.00 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=43.3
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------CCcccCCHHHhhcCCCEEEEec
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------g~~~~~~~~~~~~~~DiIi~~v 113 (351)
..|||.|.| +|-+|+.++..|.+.|++|+++|+........... .+.-.....+....+|.||-+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 87 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 87 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence 458999995 79999999999999999999998754321111101 1111112333456788887765
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.95 E-value=0.0035 Score=55.09 Aligned_cols=37 Identities=38% Similarity=0.460 Sum_probs=32.2
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcc
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLS 83 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~ 83 (351)
+.|+||+|||+|.-|...|..|.+.| ++|++++++..
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 45789999999999999999998766 59999999854
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.94 E-value=0.005 Score=48.48 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=58.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-----CCHHHh-h-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-----DSPHSL-A-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~-~-----~~~DiIi~~vp~~ 116 (351)
.+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+++.|...+ .+..+. . ...|++|.|++.+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 108 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSE 108 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccc
Confidence 57999995 9999999988887774 89999999998888877764221 122221 1 2378888888555
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
..++..+. .+.++..++.++
T Consensus 109 ~~~~~a~~--------~l~~~G~iv~~G 128 (170)
T d1jvba2 109 KTLSVYPK--------ALAKQGKYVMVG 128 (170)
T ss_dssp HHHTTGGG--------GEEEEEEEEECC
T ss_pred hHHHhhhh--------hcccCCEEEEec
Confidence 54554443 334555555554
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0054 Score=45.84 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=31.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.|+.|||.|.+|.-+|..|.+.|.+|+++.|++.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 6899999999999999999999999999999754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.91 E-value=0.0065 Score=52.01 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=46.7
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccch--------hHHhcCCccc-------CCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ--------PLLDIGAHLA-------DSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~--------~~~~~g~~~~-------~~~~~~~~~~DiIi~~ 112 (351)
++||.|+| +|.+|..++..|.+.||+|++.+|++.... .+...++... .+..+....++.++.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 47899998 599999999999999999999999754321 1222233321 1233456778888888
Q ss_pred cC
Q 018694 113 VG 114 (351)
Q Consensus 113 vp 114 (351)
.+
T Consensus 83 ~~ 84 (312)
T d1qyda_ 83 LA 84 (312)
T ss_dssp CC
T ss_pred hh
Confidence 74
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.88 E-value=0.0045 Score=45.52 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+.|+.|||.|..|.-+|..|.+.|++|+++.+.+.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 36899999999999999999999999999998754
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.87 E-value=0.01 Score=50.23 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=53.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
|++|| |.+.+|.++++.|++.|++|++.+|++++++...+. ..+...+..++.+.+ .++.+++.++.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~~~-- 75 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYVT-- 75 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHHHH--
Confidence 56666 557899999999999999999999998876654432 111112234444333 25566776666
Q ss_pred CCCcccCCCCCcEEEecC
Q 018694 127 SSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 76 --~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 76 --ATTERFGRIDGFFNNA 91 (258)
T ss_dssp --HHHHHHSCCSEEEECC
T ss_pred --HHHHHhCCCCEEEECC
Confidence 5555444555666654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.85 E-value=0.0073 Score=51.17 Aligned_cols=83 Identities=16% Similarity=0.090 Sum_probs=51.6
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
+++.|.| .+.+|.++++.|++.|++|++.+|++++++...+. ..+. ..++.++.+ .+..++++++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~--~~~~~~~~~D~s~~~~~~~~~~-- 75 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREK--GLNVEGSVCDLLSRTERDKLMQ-- 75 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCCceEEEeecCCHHHHHHHHH--
Confidence 3455555 68899999999999999999999998776655432 1111 112222222 35566666666
Q ss_pred CCCcccCC-CCCcEEEecCC
Q 018694 127 SSGALSGL-RPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l-~~~~~ii~~s~ 145 (351)
++.... .+..++++...
T Consensus 76 --~~~~~~~g~idilinnag 93 (258)
T d1ae1a_ 76 --TVAHVFDGKLNILVNNAG 93 (258)
T ss_dssp --HHHHHTTSCCCEEEECCC
T ss_pred --HHHHHhCCCcEEEecccc
Confidence 555443 34556665443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.85 E-value=0.0043 Score=54.25 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
++||.|||+|--|...|..|++.|++|++++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4799999999999999999999999999999875
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0061 Score=51.42 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=53.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~~~v~~~~ 126 (351)
|+.+| |.+.+|.++|+.|++.|++|++.+|++++++.+.++.- +...+. +.+..++++++.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~-------------~~~~~~~Dvs~~~~v~~~~~-- 71 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-------------GAVFILCDVTQEDDVKTLVS-- 71 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-------------TEEEEECCTTSHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-------------CCeEEEccCCCHHHHHHHHH--
Confidence 56666 56899999999999999999999999888777665421 122222 235667777776
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 72 --~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 72 --ETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp --HHHHHHSCCCEEEECCC
T ss_pred --HHHHhcCCCCEEEeccc
Confidence 55554445556666553
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.83 E-value=0.0053 Score=45.64 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+|.|||.|.+|.-+|..|.+.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.80 E-value=0.0041 Score=52.65 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=29.7
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|.|||+|-+|.+.|..|+++|++|++++++.
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 9999999999999999999999999999864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0081 Score=50.39 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=53.4
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+++| |.+.+|.++|+.|++.|++|++++|++++++.+.++ .-.++..+..=+.+..+++++++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~---- 70 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVLE---- 70 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHHH----
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhhh----
Confidence 67777 568899999999999999999999998887766543 00111111111335677777777
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.+.....+=+++|+..
T Consensus 71 ~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 71 KIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHTCSCSEEEECC
T ss_pred hhhcccCCcceehhhh
Confidence 6655555555667654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.77 E-value=0.005 Score=51.88 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=31.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~ 83 (351)
+||.|||+|--|..+|..|++.|. +|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 799999999999999999999995 8999999765
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0067 Score=51.31 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=53.0
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
|+++| |.+.+|.++|+.|++.|++|++.+|++++++.+.++ ..+. ..+++.+.+ .+..++++++.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~~~~~~~-- 80 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE-------IQQL--GGQAFACRCDITSEQELSALAD-- 80 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHc--CCcEEEEEccCCCHHHHHHHHH--
Confidence 67777 668999999999999999999999998877665432 1111 122333333 24566666666
Q ss_pred CCCcccCCCCCcEEEecC
Q 018694 127 SSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s 144 (351)
++...+.+=+++|+..
T Consensus 81 --~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 81 --FAISKLGKVDILVNNA 96 (255)
T ss_dssp --HHHHHHSSCCEEEECC
T ss_pred --HHHHHcCCCCEeeeCC
Confidence 5554444445666644
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.74 E-value=0.0044 Score=52.55 Aligned_cols=33 Identities=36% Similarity=0.474 Sum_probs=31.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
+||.|||+|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999864
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.72 E-value=0.0099 Score=49.77 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=51.8
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+.+| |.+.+|.++|+.|++.|++|++.+|++++++...+. +... .-.+| +.+..++++++.
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-~~~~------~~~~D-----v~~~~~v~~~~~---- 69 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-VGAH------PVVMD-----VADPASVERGFA---- 69 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-TTCE------EEECC-----TTCHHHHHHHHH----
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-cCCe------EEEEe-----cCCHHHHHHHHH----
Confidence 56655 557899999999999999999999998887766543 1100 01122 235666777766
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 70 ~~~~~~g~iDilVnnAG 86 (242)
T d1ulsa_ 70 EALAHLGRLDGVVHYAG 86 (242)
T ss_dssp HHHHHHSSCCEEEECCC
T ss_pred HHHHhcCCceEEEECCc
Confidence 55544444456666543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.71 E-value=0.01 Score=46.87 Aligned_cols=85 Identities=21% Similarity=0.220 Sum_probs=58.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHh------hcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSL------ASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~------~~~~DiIi~~vp~~~~~~~v 122 (351)
.+|.|.|+ |.+|....+.....|.+|++.++++++.+.+++.|....-+..+. ...+|+||-|++ ..+.+.
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~~~~~ 106 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVEES 106 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TTHHHH
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hhHHHH
Confidence 57999985 999999999888899999999999998888887775433222221 134788888774 234444
Q ss_pred hhCCCCCcccCCCCCcEEEecC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s 144 (351)
+. .+.++..++.+.
T Consensus 107 ~~--------~l~~~G~~v~~G 120 (171)
T d1iz0a2 107 LG--------LLAHGGRLVYIG 120 (171)
T ss_dssp HT--------TEEEEEEEEEC-
T ss_pred HH--------HHhcCCcEEEEe
Confidence 43 334555666554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.71 E-value=0.0075 Score=50.65 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=54.0
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~~~v~~~~ 126 (351)
|+++| |.+.+|.++|+.|++.|++|++.+|++++++.+.++- -.. ..++. +.+..+++++++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~--~~~~~~Dv~~~~~v~~~~~-- 72 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----------ADA--ARYVHLDVTQPAQWKAAVD-- 72 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------GGG--EEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hCc--ceEEEeecCCHHHHHHHHH--
Confidence 56666 5588999999999999999999999988877665431 011 22222 236667777777
Q ss_pred CCCcccCCCCCcEEEecCC
Q 018694 127 SSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 73 --~~~~~~g~idilinnAG 89 (244)
T d1nffa_ 73 --TAVTAFGGLHVLVNNAG 89 (244)
T ss_dssp --HHHHHHSCCCEEEECCC
T ss_pred --HHHHHhCCCeEEEECCc
Confidence 66555555567776554
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.70 E-value=0.0037 Score=52.96 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=41.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEec
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~v 113 (351)
|||.|.|+ |-+|+.++..|.+.||+|+..+|+.-.+.. ..+.+++++ ++|+||-|.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d--------~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITN--------VLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTC--------HHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCC--------HHHHHHHHHHcCCCEEEeec
Confidence 79999986 999999999999999999999987422111 112233333 578888877
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.69 E-value=0.0066 Score=51.48 Aligned_cols=81 Identities=6% Similarity=0.081 Sum_probs=52.7
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
|+++| |.+.+|.++|+.|++.|++|++++|+++.++...+. ..+ ...++..+.+ .+..++++++.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~~-- 74 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVIGTVD-- 74 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHHH--
Confidence 56666 557899999999999999999999998877665432 111 1123333333 35667777776
Q ss_pred CCCcccCCCCCcEEEecC
Q 018694 127 SSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s 144 (351)
.+.....+=.++|+..
T Consensus 75 --~~~~~~g~iDilVnna 90 (260)
T d1zema1 75 --SVVRDFGKIDFLFNNA 90 (260)
T ss_dssp --HHHHHHSCCCEEEECC
T ss_pred --HHHHHhCCCCeehhhh
Confidence 5555444445666544
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0044 Score=52.44 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=54.9
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~~~v~~~~ 126 (351)
|+.+| |.+.+|.++|+.|++.|.+|++.+|+.++.+...+. +. +......+..+. +.+..++++++.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-l~------~~~~~~~~~~~~~Dv~~~~~v~~~~~-- 74 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA-LH------EQFEPQKTLFIQCDVADQQQLRDTFR-- 74 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HT------TTSCGGGEEEEECCTTSHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HH------HhcCCCcEEEEEeecCCHHHHHHHHH--
Confidence 56666 558899999999999999999999998877665442 10 000111233332 235667777777
Q ss_pred CCCcccCCCCCcEEEecCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.....+=+++|+....
T Consensus 75 --~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 75 --KVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp --HHHHHHSCCCEEEECCCC
T ss_pred --HHHHHcCCcCeecccccc
Confidence 565545455577765543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.64 E-value=0.0037 Score=53.48 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+|.|||+|..|..+|..|.+.|++|+++++.++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3799999999999999999999999999999864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=95.63 E-value=0.0084 Score=50.86 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=32.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
.+||.|+|+ |.+|+.++..|.++|++|++.+|++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 478999975 999999999999999999999998654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.62 E-value=0.0085 Score=50.75 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=51.9
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|++|++++|++++++...++ ..+ ....+.++.+ .+..++++++.
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~~- 77 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRS--KGFKVEASVCDLSSRSERQELMN- 77 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCEEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCCceEEEeeCCCHHHHHHHHH-
Confidence 356666 557899999999999999999999998877665433 111 0112222222 25566676666
Q ss_pred CCCCcccCCC-CCcEEEecCC
Q 018694 126 PSSGALSGLR-PGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~-~~~~ii~~s~ 145 (351)
++...+. +=.++|+...
T Consensus 78 ---~~~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 78 ---TVANHFHGKLNILVNNAG 95 (259)
T ss_dssp ---HHHHHTTTCCCEEEECCC
T ss_pred ---HHHHHhCCCceEEEECCc
Confidence 5544333 3456666543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.61 E-value=0.015 Score=45.68 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=52.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCccc-------CCHHHhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLA-------DSPHSLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~-----~~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...++.+...|. .|++.++++++.+..++.|...+ ++..+.. ...|+||.|+..+
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~ 109 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCH
Confidence 479999999999999998888886 57777888888877777674322 1122222 2478888888655
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
...+....
T Consensus 110 ~~~~~~~~ 117 (176)
T d2fzwa2 110 KVMRAALE 117 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.58 E-value=0.0052 Score=50.72 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~ 83 (351)
+||+|||+|.-|..-|..|.++ |++|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5999999999999999999765 789999998864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.57 E-value=0.0091 Score=51.06 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+.+| |.+.+|.++|+.|++.|++|++.+|++++++.+.++ .-.++..+..=+.+..++++++.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~~~~~~~---- 71 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD----------HGDNVLGIVGDVRSLEDQKQAAS---- 71 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHHH----
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeeEEecccccHHHHHHHHH----
Confidence 55666 568999999999999999999999998877665432 11111112222235566666666
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.+.....+=.++|+..
T Consensus 72 ~~~~~~g~idilvnnA 87 (276)
T d1bdba_ 72 RCVARFGKIDTLIPNA 87 (276)
T ss_dssp HHHHHHSCCCEEECCC
T ss_pred HHHHHhCCcccccccc
Confidence 5554444445666544
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.013 Score=43.04 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=62.4
Q ss_pred CCeEEEEccCh-----------hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCC-EEEEecCCh
Q 018694 49 NTRIGWIGTGV-----------MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD-VVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~-----------mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~D-iIi~~vp~~ 116 (351)
..||.|||+|. .+...++.|.+.|+++++++-||+.+ .++.+ -+| +.|..+ ..
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----------std~d----~aD~lYfepl-t~ 68 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----------STDYD----TSDRLYFEPV-TL 68 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----------TTSTT----SSSEEECCCC-SH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----------hcChh----hcCceEEccC-CH
Confidence 46899999985 47788899999999999999998763 22322 233 555566 77
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
..+.+++.. -.++.+++.++ -.+...+...+.+.|+.++
T Consensus 69 e~v~~Ii~~--------E~p~~ii~~~G---GQtalnla~~L~~~gv~iL 107 (121)
T d1a9xa4 69 EDVLEIVRI--------EKPKGVIVQYG---GQTPLKLARALEAAGVPVI 107 (121)
T ss_dssp HHHHHHHHH--------HCCSEEECSSS---THHHHTTHHHHHHTTCCBC
T ss_pred HHHHHHHHH--------hCCCEEEeehh---hhhHHHHHHHHHHcCCcEE
Confidence 777777762 13666766554 4455566666666665443
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.56 E-value=0.0078 Score=45.49 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.||.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5899999999999999999999999999998754
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.025 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG 72 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g 72 (351)
.+.+|+++|+|.+|+.+++.|.+..
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 3578999999999999999998754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.54 E-value=0.00088 Score=55.69 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=24.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTV 75 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V 75 (351)
|||.|||+|-+|.+.|..|+++|++|
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCc
Confidence 79999999999999999999999753
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=95.52 E-value=0.016 Score=48.74 Aligned_cols=112 Identities=9% Similarity=0.118 Sum_probs=63.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEE-eCC-----c-----ccchhH-Hh---------------cCCcccCCHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVF-NRT-----L-----SKAQPL-LD---------------IGAHLADSPHSL 102 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~-dr~-----~-----~~~~~~-~~---------------~g~~~~~~~~~~ 102 (351)
.||.|=|.|++|...++.|.+.|..|+.+ |.+ + +.+..+ .+ .+....+..+-.
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPW 116 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcc
Confidence 68999999999999999999999987644 432 1 111111 10 011222211122
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
-.+||+++-|--...-..+.+. .+.. ..=++|+...|+ |.+.+.....+.++++.|++-
T Consensus 117 ~~~~DiliPcA~~~~I~~~~a~----~l~a--~~ck~I~EgAN~-p~t~ea~~~ll~~~gI~vvPD 175 (255)
T d1bgva1 117 GQKVDIIMPCATQNDVDLEQAK----KIVA--NNVKYYIEVANM-PTTNEALRFLMQQPNMVVAPS 175 (255)
T ss_dssp GSCCSEEECCSCTTCBCHHHHH----HHHH--TTCCEEECCSSS-CBCHHHHHHHHHCTTCEEECH
T ss_pred cccccEEeeccccccccHHHHH----hhhh--cCceEEecCCCC-CcchHHHHHHHHhcCCEEehH
Confidence 3479998877733222223332 2221 012578888887 555555555566678877743
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.50 E-value=0.026 Score=44.32 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=53.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCC-------HHHhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADS-------PHSLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~DiIi~~vp~~ 116 (351)
.+|.|+|+|.+|...+..++..|- +|++.++++++.+...+.|....-+ .++.. ...|++|.++...
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~ 109 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNV 109 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCH
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecCCH
Confidence 579999999999999999888776 6888999999998888877532211 11211 2478888888555
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
......+.
T Consensus 110 ~~~~~a~~ 117 (175)
T d1cdoa2 110 GVMRNALE 117 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.46 E-value=0.0063 Score=50.22 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
+||.|||+|.-|.+.|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 479999999999999999999996 799999874
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.46 E-value=0.0072 Score=50.73 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=30.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
|||.|| |.+.+|.++|+.|++.|++|++.+|+.+.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~ 37 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE 37 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence 678777 56889999999999999999999987543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.44 E-value=0.012 Score=49.62 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=51.8
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
|+.|| |.+.+|.++|+.|++.|++|++.+|+.++++.+.++ | .+++.+.+ .++.++++++.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-------------~~~~~~~~Dvt~~~~v~~~~~- 71 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG-------------PAACAIALDVTDQASIDRCVA- 71 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC-------------TTEEEEECCTTCHHHHHHHHH-
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-------------CceEEEEeeCCCHHHHHHHHH-
Confidence 66666 669999999999999999999999998877766543 2 11222222 25566666666
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 72 ---~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 72 ---ELLDRWGSIDILVNNAA 88 (256)
T ss_dssp ---HHHHHHSCCCEEEECCC
T ss_pred ---HHHHHhCCccEEEeecc
Confidence 55544444446665443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.015 Score=45.74 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=38.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|+|+ |.+|....+.....|.+|++.++++++.+.+++.|.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 57999995 999999999988999999999988888777777664
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.013 Score=51.29 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=44.9
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-C-------CcccCCHHH-hhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-G-------AHLADSPHS-LASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g-------~~~~~~~~~-~~~~~DiIi~~v 113 (351)
|||.|.| +|.+|+.+++.|.+.|+ +|++.|+.......+.+. + +.-..+..+ ...++|+||-+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a 75 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence 7999994 59999999999999985 899998876554444332 1 121112222 556799999877
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0029 Score=48.98 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=29.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
++|.|||.|.+|..-+..|.+.|.+|++++..
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 68999999999999999999999999999653
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0093 Score=50.03 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=36.2
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
-|+++| |.+.+|.++++.|++.|++|++.+|++++++.+.+.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~ 49 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY 49 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence 467777 789999999999999999999999998887766543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.01 Score=46.78 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc------------ccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH------------LADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~------------~~~~~~~~~~~~DiIi~~vp~ 115 (351)
-+++.|||-++ +|..+|..|.+.|..|+.++.+...... +..... ..+.+.+...++|++|.+++.
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~ 107 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPS 107 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhccccCCEEEEccCC
Confidence 37899999876 5999999999999999999865321100 000011 011255666789999999966
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.- . +. .+++++|.++||....
T Consensus 108 p~~-~--i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 108 ENY-K--FP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp TTC-C--BC------TTTSCTTEEEEECSSS
T ss_pred Ccc-c--cC------hhhcccCceEeecccc
Confidence 431 0 11 2356789999998753
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.064 Score=39.11 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=75.0
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.||.|-|. |..|+..++.+.+-|-+|+. ..+|.+-... -.|+.++++.+|+++ .+|.-++.||++...+.+++
T Consensus 8 trVivQGiTG~~G~~ht~~m~~yGT~iVa-GVtPgkgG~~-~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~E-- 83 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKGGME-VLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALE-- 83 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTCE-ETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHH--
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEe-eeecCCCCcE-EECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHHH--
Confidence 58999998 99999999999998887653 3334442221 136889999998764 68999999977777777776
Q ss_pred CCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEE
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAI 166 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v 166 (351)
.+...+ ++++-++.+.|.. ..++.+.+...+..++
T Consensus 84 --Ai~agI---~liv~ITEgVPv~Dm~~i~~~~~~~~~~li 119 (121)
T d1oi7a1 84 --AAHAGI---PLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (121)
T ss_dssp --HHHTTC---SEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred --HHhCCC---cEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence 554422 3566677766644 3455666655565544
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.073 Score=38.69 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=75.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.||.|-|. |.-|+..++.+.+-|-+|+. ..+|.+-.+- ..|+.++++..|+++ .+|.-++.||++...+.+++
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~yGT~vVa-GVtPgkgG~~-~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~E-- 82 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAYGTKMVG-GVTPGKGGTT-HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE-- 82 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTEE-ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH--
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEE-EEccCCCCcc-cCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHH--
Confidence 68999998 99999999999999988662 3334442221 237889999999774 68999999988887777777
Q ss_pred CCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEE
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAI 166 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v 166 (351)
.+.+.+ ++++-++.+.|. ...++...+...+..++
T Consensus 83 --Ai~agI---~~iV~ITEgIP~~D~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 83 --AIDAGI---KLIITITEGIPTLDMLTVKVKLDEAGVRMI 118 (119)
T ss_dssp --HHHTTC---SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred --HHHCCC---CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence 554333 356666666554 34456666555555543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.29 E-value=0.008 Score=51.65 Aligned_cols=33 Identities=30% Similarity=0.658 Sum_probs=30.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.+|.|||+|.+|.+.|..|+++|. +|+++++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999996 799999874
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.26 E-value=0.016 Score=47.90 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=34.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
....||.|||+|.-|...|..|++.|++|+++++++.-
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 34579999999999999999999999999999987643
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0069 Score=52.46 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=56.0
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|++|++.+|+.++++...++ +.. ...+ ....+++.+.+ .+..++++++.
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e-l~~--~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~- 86 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE-LQA--NLPP-TKQARVIPIQCNIRNEEEVNNLVK- 86 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHH--TSCT-TCCCCEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHh--hhcc-ccCceEEEEeccCCCHHHHHHHHH-
Confidence 356666 568899999999999999999999998877655432 100 0000 11334555444 25666777776
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=.++|+...
T Consensus 87 ---~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 87 ---STLDTFGKINFLVNNGG 103 (297)
T ss_dssp ---HHHHHHSCCCEEEECCC
T ss_pred ---HHHHHhCCeEEEEeecc
Confidence 55554555567776543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.22 E-value=0.014 Score=49.18 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=51.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~~ 126 (351)
|+++| |.+.+|.++|+.|++.|++|++.+|+.++.+...++ ..+. ...+++.+.+ .+..+++.++.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~-~g~~~~~~~~Dv~~~~~v~~~~~-- 75 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-------LTEK-YGVETMAFRCDVSNYEEVKKLLE-- 75 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTCHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHH-hCCcEEEEEccCCCHHHHHHHHH--
Confidence 56666 558899999999999999999999998776554322 1110 1223333333 25566666666
Q ss_pred CCCcccCCCCCcEEEecC
Q 018694 127 SSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 76 --~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 76 --AVKEKFGKLDTVVNAA 91 (251)
T ss_dssp --HHHHHHSCCCEEEECC
T ss_pred --HHHHHcCCCCEEEECC
Confidence 5554444445666644
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.20 E-value=0.012 Score=43.93 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=32.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
..++.|||.|.+|.-+|..|.+.|.+|+++.+.+.-
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i 61 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL 61 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence 368999999999999999999999999999987643
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.015 Score=50.92 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=29.3
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
|||.|+ |.|-+|+.++..|.+.|++|+++||.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 799999 55999999999999999999999874
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.011 Score=49.58 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
-|+++| |.+.+|.++++.|++.|++|++.+|+.++.+...+
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 367777 66889999999999999999999999887665543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.13 E-value=0.015 Score=49.20 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=53.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+.+| |.+.+|.++|+.|++.|++|++.+|+.++.+...++ ..+. ...+++.+.+ .+..+++.++.
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~~~~- 79 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKE-FGVKTKAYQCDVSNTDIVTKTIQ- 79 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHH-HTCCEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHH-hCCceEEEEccCCCHHHHHHHHH-
Confidence 367777 667899999999999999999999998776554332 1010 0123333333 35666777776
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 80 ---~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 80 ---QIDADLGPISGLIANA 95 (260)
T ss_dssp ---HHHHHSCSEEEEEECC
T ss_pred ---HHHHHhCCCcEecccc
Confidence 5555444445666654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.07 E-value=0.016 Score=48.34 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=52.3
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHHHHHhhCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDVRHVLLHP 126 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~~~v~~~~ 126 (351)
|+++| |.+.+|.++|+.|++.|++|++.+|+.++++...++ + ..+++++. +.++.++++++.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-----------~~~~~~~~~Dls~~~~i~~~~~-- 71 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-L-----------EAEAIAVVADVSDPKAVEAVFA-- 71 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-C-----------CSSEEEEECCTTSHHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-c-----------CCceEEEEecCCCHHHHHHHHH--
Confidence 45555 557799999999999999999999998876665443 1 11233332 235667777776
Q ss_pred CCCcccCCCCCcEEEecC
Q 018694 127 SSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s 144 (351)
.+.....+=.++|+..
T Consensus 72 --~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 72 --EALEEFGRLHGVAHFA 87 (241)
T ss_dssp --HHHHHHSCCCEEEEGG
T ss_pred --HHHHHhCCccEecccc
Confidence 6655555556677654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.06 E-value=0.035 Score=46.50 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=55.2
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++...+. +. ...++.++.+ .+..++++++.
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-~~---------~~~~~~~~~~Dv~~~~~v~~~~~- 74 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS-VG---------TPDQIQFFQHDSSDEDGWTKLFD- 74 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HC---------CTTTEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hC---------CCCcEEEEEccCCCHHHHHHHHH-
Confidence 467777 678899999999999999999999998877665543 10 1123333333 35666777776
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 75 ---~~~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 75 ---ATEKAFGPVSTLVNNAG 91 (251)
T ss_dssp ---HHHHHHSSCCEEEECCC
T ss_pred ---HHHHHhCCceEEEeccc
Confidence 55554455557776543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.04 E-value=0.015 Score=48.79 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=48.4
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+.+| |.+.+|.++|+.|++.|++|.+.+|+++..+...+.+... -++| +.+..++++++.
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~--------~~~D-----v~~~~~v~~~~~---- 68 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAF--------FQVD-----LEDERERVRFVE---- 68 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEE--------EECC-----TTCHHHHHHHHH----
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeE--------EEEe-----CCCHHHHHHHHH----
Confidence 45566 5799999999999999999999999976543322212110 0122 225666666666
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 69 ~~~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 69 EAAYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHhcCCCCeEEEeC
Confidence 5554444445666543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.02 E-value=0.024 Score=47.80 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=34.5
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
-|+.+| |.+.+|.++|+.|++.|++|++++|++++++...+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466666 66889999999999999999999999887766544
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0074 Score=52.19 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|.+|.|||+|--|...|..|++.|++|+++++++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5689999999999999999999999999999874
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.013 Score=50.16 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
..||.|||+|--|..-|..|+++|++|+++..+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3689999999999999999999999999998763
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.00 E-value=0.015 Score=42.78 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=31.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+|.|||.|.+|.-+|..|.+.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 6899999999999999999999999999998754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.99 E-value=0.018 Score=48.46 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=53.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++.+.++ . ....+++.+ .+..++++++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~~~~~~~- 72 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE----------L--GERSMFVRHDVSSEADWTLVMA- 72 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------H--CTTEEEECCCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCCeEEEEeecCCHHHHHHHHH-
Confidence 367777 568899999999999999999999998877765543 0 011222221 25666777776
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.....+=+++|+...
T Consensus 73 ---~~~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 73 ---AVQRRLGTLNVLVNNAG 89 (253)
T ss_dssp ---HHHHHHCSCCEEEECCC
T ss_pred ---HHHHHhCCCCeEEeccc
Confidence 55554445556666553
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=94.93 E-value=0.038 Score=46.43 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=73.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCc---ccCCHHHhh--cCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAH---LADSPHSLA--SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~~~~--~~~DiIi~~vp~~~~~~ 120 (351)
++|.=+|||. |. ++..+++.|.+|+.+|.++..++..+++ |+. ...+..+.. ...|+|+... ....+.
T Consensus 122 ~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~~l~ 198 (254)
T d2nxca1 122 DKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAELHA 198 (254)
T ss_dssp CEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHHHHH
T ss_pred CEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-ccccHH
Confidence 5799999997 43 4556778899999999999887766543 432 234444443 4679888766 666677
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
+++. .+...+++|..++- +.........+.+.+...|...+.
T Consensus 199 ~l~~----~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 199 ALAP----RYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHH----HHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHH----HHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 7777 67777778776552 222234456677777666766554
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.91 E-value=0.025 Score=47.63 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=51.3
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+.+| |.+.+|.++|+.|++.|++|++.+|++++++...++ + -.++..+-.=+.+..++++++.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-~---------~~~~~~~~~Dv~~~~~v~~~~~---- 71 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE-L---------GDAARYQHLDVTIEEDWQRVVA---- 71 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-T---------GGGEEEEECCTTCHHHHHHHHH----
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-h---------CCceEEEEcccCCHHHHHHHHH----
Confidence 45555 557899999999999999999999998877665543 1 0111111111235667777776
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 72 ~~~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 72 YAREEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCccEEEecCc
Confidence 55544444456666543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.015 Score=49.52 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=53.8
Q ss_pred CeEEEE--ccChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
++|+|| |.+.+|.++|+.|++. |..|++++|++++.+...++ + .+.-.++.++..=+.+...+++++.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-l------~~~~~~~~~~~~Dvs~~~sv~~~~~-- 73 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-L------QAEGLSPRFHQLDIDDLQSIRALRD-- 73 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-H------HHTTCCCEEEECCTTCHHHHHHHHH--
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-H------HhcCCcEEEEEEecCCHHHHHHHHH--
Confidence 689999 7899999999999875 89999999998887665443 1 1101122232222335666776666
Q ss_pred CCCcccCCCCCcEEEecC
Q 018694 127 SSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 74 --~~~~~~g~iDiLVnNA 89 (275)
T d1wmaa1 74 --FLRKEYGGLDVLVNNA 89 (275)
T ss_dssp --HHHHHHSSEEEEEECC
T ss_pred --HHHHhcCCcEEEEEcC
Confidence 5554333334566544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.85 E-value=0.012 Score=49.82 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=56.0
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++.+.++ +.... ....++..+.+ .+..++++++.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-l~~~~-----~~~~~~~~~~~Dvt~~~~v~~~~~- 77 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ-ILAAG-----VSEQNVNSVVADVTTDAGQDEILS- 77 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTT-----CCGGGEEEEECCTTSHHHHHHHHH-
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcC-----CCcCceEEEEccCCCHHHHHHHHH-
Confidence 478888 679999999999999999999999998877665443 10000 01112333332 25666777776
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.....+=+++|+...
T Consensus 78 ---~~~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 78 ---TTLGKFGKLDILVNNAG 94 (264)
T ss_dssp ---HHHHHHSCCCEEEECCC
T ss_pred ---HHHHHhCCCCEeecccc
Confidence 55555555567776554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.76 E-value=0.025 Score=45.53 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=47.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccC-----CHHH----hh--cCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLAD-----SPHS----LA--SQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~-----~~~~----~~--~~~DiIi~~vp 114 (351)
.+|.|+|+|.+|...+..+...|. .|++.|+++++++..++.|..... +..+ .. ...|++|.|+.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence 579999999999888887777777 788889999998888777654322 2221 11 24788888884
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.014 Score=48.94 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=34.3
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
|+.+| |.+.+|.++|+.|++.|++|++.+|++++++.+.++
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 44555 568899999999999999999999998887776654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.033 Score=45.87 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcC-------CcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIG-------AHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~~DiIi~~vp 114 (351)
.+||.|.| +|.+|..+.+.|.+.|. +|++.+|++.......... +.-..+..+.+..+|++|.|+.
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~ 89 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 89 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence 36899995 59999999999998884 8999999865543222111 1122344555677888888773
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.65 E-value=0.033 Score=43.96 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=50.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----cCCHHHhh------cCCCEEEEecCChh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----ADSPHSLA------SQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~------~~~DiIi~~vp~~~ 117 (351)
.+|.|.| +|.+|...++.+...|.+|++..+++++.+.+++.|... ..+..+.+ ...|+||-|+ ..+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~-g~~ 105 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL-AGE 105 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC-CTH
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecc-cch
Confidence 4799987 599999999999889999999999888877777665322 11222221 2367777776 344
Q ss_pred HHHHHhh
Q 018694 118 DVRHVLL 124 (351)
Q Consensus 118 ~~~~v~~ 124 (351)
.++..+.
T Consensus 106 ~~~~~~~ 112 (183)
T d1pqwa_ 106 AIQRGVQ 112 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.64 E-value=0.015 Score=46.75 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~ 82 (351)
|||.|||.|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7999999999999999999875 45899998764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.53 E-value=0.016 Score=49.24 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=53.0
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
-|+.+| |.+.+|.++|+.|++.|++|++.+|++++++...+. +.... ....++..+.+ .+..+++.++.
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~-l~~~~-----~~~~~~~~~~~Dvs~~~~v~~~~~- 77 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI-ILKSG-----VSEKQVNSVVADVTTEDGQDQIIN- 77 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHTTT-----CCGGGEEEEECCTTSHHHHHHHHH-
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcC-----CCCCceEEEEccCCCHHHHHHHHH-
Confidence 366666 668899999999999999999999998877665443 10000 00112333332 25566666666
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=.++|+..
T Consensus 78 ---~~~~~~g~iDilvnnA 93 (272)
T d1xkqa_ 78 ---STLKQFGKIDVLVNNA 93 (272)
T ss_dssp ---HHHHHHSCCCEEEECC
T ss_pred ---HHHHHhCCceEEEeCC
Confidence 5554444445666554
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.53 E-value=0.015 Score=43.41 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=42.1
Q ss_pred CeEEEEccChhhHHHHHHHH-HCCCeEE-EEeCCcccchhHHhcCCccc--CCHHHhh-cCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLL-NAGYTVT-VFNRTLSKAQPLLDIGAHLA--DSPHSLA-SQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~-~~g~~V~-~~dr~~~~~~~~~~~g~~~~--~~~~~~~-~~~DiIi~~vp~~~~~~~v~~ 124 (351)
-||.|+|+|++|.+++..+. +.|++++ ++|-++++...... |+.+. +..++.. +..++.++++ +....++++.
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~-Gi~V~~~~~l~~~~~~~i~iai~~i-~~~~~~~I~d 81 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR-GGVIEHVDLLPQRVPGRIEIALLTV-PREAAQKAAD 81 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET-TEEEEEGGGHHHHSTTTCCEEEECS-CHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC-CEEEecHHHHHHHHhhcccEEEEeC-CHHHHHHHHH
Confidence 37999999999999998764 3466644 66888766433221 44433 1222222 2355566666 4444444433
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.50 E-value=0.2 Score=36.87 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=71.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.||.|-|. |..|+..++.+.+-|-+|+. ..+|.+-... ..|+.++++..|+.+ .+|.-++.||++...+.+++
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~YGT~iVa-GVtPgKgG~~-~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~E-- 91 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEYGTNLVG-GTTPGKGGKT-HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINE-- 91 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTCE-ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHH--
T ss_pred CeEEEEcCCCcHHHHHHHHHHHhcCCeEE-eeccCCCCcc-ccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHHH--
Confidence 68999998 99999999999999988663 2333332221 237889999999875 79999999977777777776
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHH-HHHHHHh
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLAS-ELSAAAS 159 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~-~l~~~~~ 159 (351)
.+.+.+ ++++-++.+.|.... ++...+.
T Consensus 92 --Ai~agI---~liV~ITEgIPv~Dm~~i~~~~~ 120 (130)
T d1euca1 92 --AIDAEV---PLVVCITEGIPQQDMVRVKHRLL 120 (130)
T ss_dssp --HHHTTC---SEEEECCCCCCHHHHHHHHHHHT
T ss_pred --HHhCCC---CEEEEecCCCCHHHHHHHHHHHH
Confidence 554433 367777777775433 4544443
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.025 Score=46.81 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.3
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
++.|.| .+.+|.++++.|++.|++|++.+|+++.++.
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 455555 5889999999999999999999999765543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.49 E-value=0.037 Score=48.30 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=46.3
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc---------------CCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI---------------GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~---------------g~~~~~~~~~~~~~~DiIi~~v 113 (351)
+||.|.| +|-+|+.+++.|.++|++|.+..|+.++...+... .+.-..+..+++.++|.|+.+.
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a 91 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA 91 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhc
Confidence 6899995 59999999999999999999999987665443321 1122224456677888887665
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.045 Score=45.40 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCCeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 48 TNTRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 48 ~~~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
.+-|+.+| |.+.+|.++++.|++.|++|++.+|+.+..+.
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~ 46 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG 46 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcC
Confidence 34567777 55789999999999999999999999766543
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.39 E-value=0.35 Score=41.09 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCC------Cc
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKRDFE------PG 279 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~------~~ 279 (351)
.....++.+.|++....+.+++|.+.+.++ .+++..++.++.+.+. ..++.++...+.+.+..-. +.
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~ 217 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDF 217 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHH
Confidence 456778999999999999999999997654 4788999999988876 5677776655544332211 11
Q ss_pred c--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 280 F--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 280 ~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+ .+.......+.++..+-+.|+|+|.+.+....+...... .-...+++..|...|
T Consensus 218 ~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~----~lp~~lIQAqRD~FG 274 (297)
T d2pgda1 218 FKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHA----MLPANLIQAQRDYFG 274 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCS----SCTHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccC----CchhHHHHHHHHHhc
Confidence 1 123334445688999999999999999988776654422 234568888777663
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.32 E-value=0.019 Score=48.81 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=33.8
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
|+.|| |.+.+|.++|+.|++.|++|++.+|++++++...+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 66889999999999999999999999887766544
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.019 Score=46.66 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=30.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||+|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 38999999999999999999999999999975
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.28 E-value=0.021 Score=49.24 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=32.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
.+|.|||+|.-|.++|..|.+.|++|++++++++-
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i 42 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence 57999999999999999999999999999998653
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.021 Score=47.69 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=34.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
+++.|.| .+.+|.++++.|++.|++|++.+|++++++.+.++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 3444555 57899999999999999999999998887766554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.24 E-value=0.026 Score=47.80 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=52.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHHHHHhhC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~~~v~~~ 125 (351)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++...++ +. ....+.++. +.++.+++.++.
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-l~---------~~~~~~~~~~Dv~~~~~v~~~~~- 74 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN-IG---------SPDVISFVHCDVTKDEDVRNLVD- 74 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HC---------CTTTEEEEECCTTCHHHHHHHHH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hc---------CCCceEEEEccCCCHHHHHHHHH-
Confidence 366766 668899999999999999999999998887766543 10 001111222 225666776666
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
.+.....+=+++|+..
T Consensus 75 ---~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 75 ---TTIAKHGKLDIMFGNV 90 (268)
T ss_dssp ---HHHHHHSCCCEEEECC
T ss_pred ---HHHHHcCCcceecccc
Confidence 5554444445666544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.21 E-value=0.064 Score=45.13 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=28.8
Q ss_pred CeEEEEcc-C--hhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGT-G--VMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~-G--~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+++.|.|+ | .+|.++|+.|++.|++|++.+|+++
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45666675 5 5999999999999999999999854
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.13 E-value=0.012 Score=48.32 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=30.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-------eEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-------TVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-------~V~~~dr~~~ 83 (351)
.||+|||+|.-|.+-|..|.++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 589999999999999999999884 7999999864
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.049 Score=50.82 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=30.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~ 59 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ 59 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 589999999999999999999997 799998764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.00 E-value=0.024 Score=47.87 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=29.8
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||+|..|.+.|..|+++|++|+++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38999999999999999999999999999863
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=93.99 E-value=0.031 Score=46.53 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=53.1
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCe-------EEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEe--cCChhHH
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYT-------VTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI--VGYPSDV 119 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~-------V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~--vp~~~~~ 119 (351)
+|.+| |.+.+|.++|+.|++.|++ |.+++|++++++.+.++ ..+ ...++.++. +.+..++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dvt~~~~v 72 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRA--EGALTDTITADISDMADV 72 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHT--TTCEEEEEECCTTSHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEecCCCHHHH
Confidence 56666 4578999999999999987 88999998877665432 011 112233333 2356677
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+++++ .+.....+=+++|+...
T Consensus 73 ~~~~~----~~~~~~g~iDilvnnAg 94 (240)
T d2bd0a1 73 RRLTT----HIVERYGHIDCLVNNAG 94 (240)
T ss_dssp HHHHH----HHHHHTSCCSEEEECCC
T ss_pred HHHHH----HHHHHcCCcceeecccc
Confidence 77776 56555555557776543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=93.97 E-value=0.17 Score=41.21 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=60.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc--------ccchhHHh----c--CCcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL--------SKAQPLLD----I--GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~--------~~~~~~~~----~--g~~~~~~~~~~~~~~DiIi~~v 113 (351)
..||.|+|+|.-|..++..+.+.+. +++++|+.- ......+. . ......+..+++..+++++...
T Consensus 26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~ 105 (222)
T d1vl6a1 26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS 105 (222)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS
T ss_pred hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc
Confidence 3789999999999999999988776 688998861 11211111 1 1233457778888888776666
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
......++.+. + +.+.-+|..+||-.+.
T Consensus 106 ~~~~~~~e~m~----~----~~~rPIIFpLSNPt~~ 133 (222)
T d1vl6a1 106 RGNILKPEWIK----K----MSRKPVIFALANPVPE 133 (222)
T ss_dssp CSSCSCHHHHT----T----SCSSCEEEECCSSSCS
T ss_pred ccccccHHHHh----h----cCCCCEEEecCCCccc
Confidence 32222333443 2 2466788999986543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=93.92 E-value=0.035 Score=46.35 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=50.1
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccc-hhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhh
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~ 124 (351)
-|+++| |.+.+|.++|+.|++.|++|++.+|+++.. +...+ +. ..+++.+.+ .+..+++.++.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~~--g~~~~~~~~Dvs~~~~v~~~~~ 72 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR----------NL--GRRVLTVKCDVSQPGDVEAFGK 72 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH----------HT--TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHH----------Hc--CCcEEEEEeeCCCHHHHHHHHH
Confidence 367777 558899999999999999999999986431 11111 10 122333332 35667777776
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
++.....+=+++|+...
T Consensus 73 ----~~~~~~G~iDilVnnAG 89 (247)
T d2ew8a1 73 ----QVISTFGRCDILVNNAG 89 (247)
T ss_dssp ----HHHHHHSCCCEEEECCC
T ss_pred ----HHHHHcCCCCEEEECCC
Confidence 55554445556776543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.028 Score=47.61 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.4
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
|+.+| |.+.+|.++|+.|++.|++|++.+|+.++++.+.+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 45779999999999999999999999988776654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.80 E-value=0.028 Score=43.60 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=30.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~ 83 (351)
+||.|||.|..|..+|..|.+.+. +|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 689999999999999999998775 7999988764
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.078 Score=39.19 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=59.5
Q ss_pred CCCCeEEEEccCh-----------hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCC-EEEEecC
Q 018694 47 PTNTRIGWIGTGV-----------MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD-VVFSIVG 114 (351)
Q Consensus 47 ~~~~kI~iIG~G~-----------mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~D-iIi~~vp 114 (351)
+...||.|||+|. .+...++.|.+.|+++++++-||+.+ .++.+ -+| +.|..+
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV----------std~d----~aD~lYfePl- 69 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI----------MTDPE----MADATYIEPI- 69 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG----------GGCGG----GSSEEECSCC-
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh----------hcChh----hcceeeeecC-
Confidence 3457999999985 47788889999999999999998763 22332 223 555577
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
....+.++++. -.++.++..+. -.+...+...+.+
T Consensus 70 t~e~v~~Ii~~--------E~pd~il~~~G---GQtalnla~~L~~ 104 (127)
T d1a9xa3 70 HWEVVRKIIEK--------ERPDAVLPTMG---GQTALNCALELER 104 (127)
T ss_dssp CHHHHHHHHHH--------HCCSEEECSSS---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--------hCcCCeEEEee---eehHhHHHHHHHH
Confidence 77778877762 13565666544 5555556655543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.72 E-value=0.045 Score=46.10 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=29.3
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|+.|| |.+.+|.++|+.|++.|++|++.+|+.+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~ 42 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE 42 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 67777 6789999999999999999999999854
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.045 Score=47.11 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=41.3
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCc-ccchhHHhc----C--CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTL-SKAQPLLDI----G--AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~~~~~~~----g--~~~~~~~~~~~~~~DiIi~~v 113 (351)
+||.|. |+|-+|+.++..|.+.|++|+++|+.. .+.+.+... . +.-.+..+.+..++|+||-+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlA 73 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLA 73 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECc
Confidence 689999 459999999999999999999998632 222222111 0 111122333445789888664
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.54 E-value=0.053 Score=46.72 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=29.9
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
-|+++| |.+.+|.++|+.|++.|+.|++.|++.+.
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~ 43 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF 43 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence 367777 66889999999999999999999988653
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.48 E-value=0.022 Score=44.11 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC-----CchhhhhhhhhcccCCCCCccchhh------------
Q 018694 222 NQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAA-----GSKSLDLHGSRILKRDFEPGFFVNH------------ 284 (351)
Q Consensus 222 ~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~-----~s~~~~~~~~~~~~~~~~~~~~~~~------------ 284 (351)
.|.-.+.+..++.|+..++++.|-+.++++....-++. +|. -..+...+. .|.+.+.
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sR-N~~~G~~l~-----~G~~~~e~~~~~~~~~~~~ 107 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGR-NGMLGELLG-----KGLSIDEAMEELERRGVGV 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHH-HHHHHHHHH-----TTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCC-ccHHHHHHh-----hhhhHHHHHHHhccccccc
Confidence 58889999999999999999999998877653222211 110 001111121 1222222
Q ss_pred --HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018694 285 --FVKDLGICLKECQNMGLALPGLALAQQLYLS 315 (351)
Q Consensus 285 --~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~ 315 (351)
...-...+.++++++++++|+++++++++..
T Consensus 108 vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~ 140 (155)
T d1txga1 108 VEGYKTAEKAYRLSSKINADTKLLDSIYRVLYE 140 (155)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC
Confidence 3334567888999999999999999998864
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.44 E-value=0.059 Score=44.83 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=50.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEE-eCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVF-NRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
+|.+| |.+.+|.++|+.|++.|++|++. .|+++..+.+.++ .++. ..+++++.+ .+..++++++.
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~-------~~~~--g~~~~~~~~Dv~~~~~v~~~~~- 71 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ-------IEAY--GGQAITFGGDVSKEADVEAMMK- 71 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHH--TCEEEEEECCTTSHHHHHHHHH-
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-------HHHc--CCcEEEEeCCCCCHHHHHHHHH-
Confidence 47777 67899999999999999999885 5566555554332 1111 123333332 25566777776
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 72 ---~~~~~~g~iDiLVnnA 87 (244)
T d1edoa_ 72 ---TAIDAWGTIDVVVNNA 87 (244)
T ss_dssp ---HHHHHSSCCSEEEECC
T ss_pred ---HHHHHcCCCCcccccc
Confidence 5555555555677654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.42 E-value=0.054 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|+.+| |.+.+|.++++.|++.|++|++.+++.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~ 53 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANST 53 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 67777 5799999999999999999999887743
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.36 E-value=0.0039 Score=48.91 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh---------hcccCCC------C
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS---------RILKRDF------E 277 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~---------~~~~~~~------~ 277 (351)
|....+++..|.-.+.+..++.|+..++++.|-+.++++....-++ .....+++ .+.++.. .
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGD---li~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~ 97 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGD---LQLTCSSELSRNFTVGKKLGKGLPIEEIQRT 97 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHH---HHHHTTCTTSHHHHHHHHHHHTCCHHHHHHS
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchh---heeeeecchhHHHHHHHHHhccccHHHHHHh
Confidence 4444556678999999999999999999999988776654322111 11111111 1111110 0
Q ss_pred CccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 278 PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 278 ~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
.+. +-+...-...+.+.++++++++|+++++|+++. ++.+...+++.+.
T Consensus 98 ~~~-~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~Lm 146 (160)
T d1n1ea1 98 SKA-VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADLL 146 (160)
T ss_dssp CCS-CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHHT
T ss_pred ccc-hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHHH
Confidence 011 122344556788999999999999999999883 3456655555443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.29 E-value=0.046 Score=47.72 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchh--HHhc-CCcc-----cCC---HHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP--LLDI-GAHL-----ADS---PHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~--~~~~-g~~~-----~~~---~~~~~~~~DiIi~~vp 114 (351)
.++|.|+| +|.+|+.+++.|.+.||+|.+..|++.+... +... |+.+ .+. .+.+...+|.++...+
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~ 80 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 80 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence 36899997 5999999999999999999999998765432 2221 3322 111 2345677888887763
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.27 E-value=0.023 Score=40.91 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=26.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+||.|||.|+-|.-++..|+..+-.|++..|.
T Consensus 33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r 64 (107)
T d2gv8a2 33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL 64 (107)
T ss_dssp CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence 78999999999999999998766665544443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.22 E-value=0.04 Score=46.20 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCeEEEE--ccChhhHHHHHHHHH---CCCeEEEEeCCcccchhHHh
Q 018694 49 NTRIGWI--GTGVMGRSMCAHLLN---AGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 49 ~~kI~iI--G~G~mG~~ia~~L~~---~g~~V~~~dr~~~~~~~~~~ 90 (351)
.-||+|| |.+.+|.++|+.|++ .|+.|++++|++++++.+.+
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence 3589999 557899999999986 79999999999888766543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.038 Score=47.62 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=29.4
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|.|||+|.-|.+-|..|+++|++|++++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 8999999999999999999999999999864
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.18 E-value=0.048 Score=45.77 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=49.8
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCc-ccchhHHhcCCcccCCHHHhhcCCCEEEEec--CChhHHHHHhhC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTL-SKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYPSDVRHVLLH 125 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~~~~~~v~~~ 125 (351)
|+++| |.+.+|.++|+.|++.|++|++.+|+. +.++.+.+. ..+. ...+++++.+ .+..++++++.
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~~~~- 75 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG-------LAAQ-HGVKVLYDGADLSKGEAVRGLVD- 75 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH-------HHHH-HTSCEEEECCCTTSHHHHHHHHH-
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-------HHHh-cCCcEEEEECCCCCHHHHHHHHH-
Confidence 67777 668899999999999999999999974 334433221 0000 1223333332 25566666666
Q ss_pred CCCCcccCCCCCcEEEecC
Q 018694 126 PSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s 144 (351)
++.....+=+++|+..
T Consensus 76 ---~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 76 ---NAVRQMGRIDILVNNA 91 (260)
T ss_dssp ---HHHHHHSCCSEEEECC
T ss_pred ---HHHHHhCCCcEEEeec
Confidence 5554444445666554
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=93.16 E-value=0.036 Score=45.60 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=30.6
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccch
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ 86 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~ 86 (351)
|+++| |.+.+|.++|+.|++.|++|++.+|+++..+
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~ 39 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGED 39 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccccc
Confidence 56666 5699999999999999999999999876543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.08 E-value=0.048 Score=45.76 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=29.4
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEE-eCCcccchhH
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVF-NRTLSKAQPL 88 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~-dr~~~~~~~~ 88 (351)
|+.+| |.+.+|.++|+.|++.|++|++. +++.+..+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~ 47 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEV 47 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHH
Confidence 56666 67889999999999999999885 5555544443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.21 Score=38.76 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=36.8
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|+ |.|.+|....+.....|.+|++.++++++.+.+++.|.
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 479999 55669999998888899999999999998888776663
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.72 E-value=0.059 Score=44.35 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.7
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA 85 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~ 85 (351)
.|.|||+|..|...|..|++.|++|+++++++..-
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g 38 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 38 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 49999999999999999999999999999986543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.69 E-value=0.15 Score=42.29 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=48.1
Q ss_pred eEEEEccC---hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 51 RIGWIGTG---VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 51 kI~iIG~G---~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
++.|-|++ .+|.++|+.|++.|++|++.+|+++..+...+. .+....+..+-.=+.+..+++.++.
T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~~~v~~~~~--- 78 (256)
T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKL--------AEALGGALLFRADVTQDEELDALFA--- 78 (256)
T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHTTCCEEEECCTTCHHHHHHHHH---
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHh--------hhccCcccccccccCCHHHHHHHHH---
Confidence 45555764 599999999999999999999985443322111 1111111111111235666777766
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.....+=.++|+....
T Consensus 79 -~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 79 -GVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp -HHHHHHSSEEEEEECCCC
T ss_pred -HHHHhcCCceEEEecccc
Confidence 555444444466765543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=92.57 E-value=0.21 Score=41.32 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=29.1
Q ss_pred CeEEEEccC---hhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 50 TRIGWIGTG---VMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 50 ~kI~iIG~G---~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
+++.|.|++ .+|.++|+.|++.|++|++.+|+++..+.
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~ 46 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR 46 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 345555654 48899999999999999999998654333
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.57 E-value=0.12 Score=40.27 Aligned_cols=73 Identities=22% Similarity=0.161 Sum_probs=52.8
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh---------cCCCEEEEecCChhHHH
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA---------SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~---------~~~DiIi~~vp~~~~~~ 120 (351)
.|.|-| +|.+|....+.....|.+|+...+++++.+.+.+.|....-+.++.. ...|+||-++ -...+.
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~v-gg~~~~ 104 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPV-GGKQLA 104 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESC-CTHHHH
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecC-cHHHHH
Confidence 488887 59999999998888999999999999998888877754433333211 2367777777 555555
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
+.+.
T Consensus 105 ~~~~ 108 (167)
T d1tt7a2 105 SLLS 108 (167)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.46 E-value=0.052 Score=41.77 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=27.6
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
||.|||.|..|..+|..|.+ +.+|+++++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 89999999999999999964 78999998754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.44 E-value=0.09 Score=38.13 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=30.0
Q ss_pred CCeEEEEccChhhHHHHHHHHH---CCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN---AGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~---~g~~V~~~dr~~~~ 84 (351)
+.||.|||.|.+|.-+|..|.+ .|.+|+++.+++.-
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i 56 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 56 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence 3689999999999999987654 48899999987643
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=92.42 E-value=0.055 Score=39.18 Aligned_cols=84 Identities=10% Similarity=-0.022 Sum_probs=60.3
Q ss_pred HHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhh-h---hhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCC
Q 018694 229 TMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLD-L---HGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLAL 303 (351)
Q Consensus 229 ~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~-~---~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~ 303 (351)
++..+.|++. .+.+.|++.++..+++.....++..+- . ....+.+...+||.+... .++..++.|+.-
T Consensus 18 y~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s~~~~~~L~~~V~SpgGtT~a-------gl~~l~~~~~~~ 90 (111)
T d1yqga1 18 YVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHE-------AVEAFRRHRVAE 90 (111)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHH-------HHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHhcccCcchhHHH-------HHHHHHHCChHH
Confidence 6677777777 899999999999998887765543332 1 123344455667776643 567788889888
Q ss_pred cHHHHHHHHHHHHHHc
Q 018694 304 PGLALAQQLYLSLKAH 319 (351)
Q Consensus 304 p~~~~~~~l~~~~~~~ 319 (351)
-+.+++...++++.+.
T Consensus 91 ~i~~ai~aA~~Rs~el 106 (111)
T d1yqga1 91 AISEGVCACVRRSQEM 106 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.39 E-value=0.053 Score=43.62 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCc
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~ 82 (351)
+||.|+|+ |.+|..+++.|.+.|+ +|+...|++
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~ 38 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA 38 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence 68999977 9999999999999998 455556554
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.18 E-value=0.08 Score=38.51 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=28.7
Q ss_pred CeEEEEccChhhHHHHHHHHH---CCCeEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN---AGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~---~g~~V~~~dr~~~~ 84 (351)
.+|.|||.|.+|.-+|..|.+ .|.+|+++.+.+.-
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i 58 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI 58 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence 689999999999999976654 45689999987543
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.13 E-value=0.079 Score=43.91 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=34.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
..|.|||+|..|...|..|+++|++|+++++++..-..+.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~ 44 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence 3599999999999999999999999999999876544443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.056 Score=47.47 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=26.8
Q ss_pred eEE-EEc-cChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIG-WIG-TGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~-iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
||+ |.| +|-+|+.++..|.+.|++|++.||..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 566 555 89999999999999999999999854
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.08 E-value=0.09 Score=45.64 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=34.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
+||.|.| +|-+|+.++..|.+.|++|.+++|+..+...+
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~ 48 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL 48 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH
Confidence 6899996 69999999999999999999999987655443
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.06 E-value=0.069 Score=41.61 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.+|.|||.|..|..+|..|.+.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 689999999999999999999999877765543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.03 E-value=0.13 Score=34.39 Aligned_cols=43 Identities=28% Similarity=0.358 Sum_probs=37.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG 92 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g 92 (351)
.+|.|.| .|.+|....+.+...|++|+...+++++.+.+++.|
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 5788885 599999999988999999999999999988877654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.00 E-value=0.24 Score=38.75 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=60.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----cCC-HHHhh-----cCCCEEEEecCChh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----ADS-PHSLA-----SQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----~~~-~~~~~-----~~~DiIi~~vp~~~ 117 (351)
.+|.|.|+ |.+|....+.....|.+|+..++++++.+.+.+.|... ..+ .+++. ...|+||-|+ -.+
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v-G~~ 109 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV-GGE 109 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS-CHH
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEec-Cch
Confidence 56888877 77999988888889999999999998888888776431 111 12222 3489999999 556
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
..++.+. .+.++..++.+..
T Consensus 110 ~~~~~~~--------~l~~~G~~v~~G~ 129 (182)
T d1v3va2 110 FLNTVLS--------QMKDFGKIAICGA 129 (182)
T ss_dssp HHHHHGG--------GEEEEEEEEECCC
T ss_pred hhhhhhh--------hccCCCeEEeecc
Confidence 6665554 3346666666653
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=91.92 E-value=1.5 Score=37.09 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHhhCc---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC
Q 018694 188 GDESVVQKLNPLFALMGK---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA 258 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~ 258 (351)
...+........+..... ............++.+.|++....+..++|++.+.++ .+++..++.++.+.+.
T Consensus 115 ~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GC 194 (300)
T d1pgja1 115 MYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGC 194 (300)
T ss_dssp HTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSS
T ss_pred CChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCc
Confidence 344444444444443332 2223345677789999999999999999999997654 4689999999888776
Q ss_pred -CCchhhhhhhhhcccCCCC----Cccch--hhHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHH
Q 018694 259 -AGSKSLDLHGSRILKRDFE----PGFFV--NHFVKD-LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALI 330 (351)
Q Consensus 259 -~~s~~~~~~~~~~~~~~~~----~~~~~--~~~~kd-~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~ 330 (351)
..+..++...+.+.+.... ..|.- ...... .+.+...+.+.|+|+|++.+....+...... ......++
T Consensus 195 IIRS~LL~~i~~a~~~~~~l~~l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~---~l~~anLI 271 (300)
T d1pgja1 195 ILQGYLLKPMTEAFEKNPNISNLMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTP---TLKYGQLV 271 (300)
T ss_dssp TTCBTTHHHHHHHHHHCTTCSCTTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCS---CCTHHHHH
T ss_pred eeeHHHHHHHHHHhhcCCccchhhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc---CCchhHHH
Confidence 4566666554433322111 11211 111111 1345556778899999998887766555422 22334688
Q ss_pred HHHHHhcC
Q 018694 331 LALERLNN 338 (351)
Q Consensus 331 ~~~~~~~~ 338 (351)
+..|...|
T Consensus 272 QAqRD~FG 279 (300)
T d1pgja1 272 SLQRDVFG 279 (300)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcC
Confidence 88776553
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=91.87 E-value=0.078 Score=42.43 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC---eEEEEeCCcccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRTLSKA 85 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~~~~~ 85 (351)
+||-|||.|.-|..++.+|.+.|. +.+.+|.+...+
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L 39 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVL 39 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHH
Confidence 589999999999999999998765 455666665443
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.76 E-value=0.065 Score=46.29 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=30.1
Q ss_pred eEEEEccChhhHHHHHHHH-----HCCCeEEEEeCCccc
Q 018694 51 RIGWIGTGVMGRSMCAHLL-----NAGYTVTVFNRTLSK 84 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~-----~~g~~V~~~dr~~~~ 84 (351)
-|.|||+|-.|..+|..|+ ++|++|+++++.+..
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 4999999999999999996 579999999987653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.41 E-value=0.13 Score=39.21 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=29.0
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
++.|+ |.|.+|..+|..|++.|++|+++.+.+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 45555 9999999999999999999999998754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.22 E-value=0.13 Score=40.31 Aligned_cols=44 Identities=27% Similarity=0.303 Sum_probs=38.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA 93 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~ 93 (351)
.+|.|-| .|.+|....+.....|.+|+...+++++.+.+++.|.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa 77 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA 77 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccc
Confidence 4599997 6999999999988999999999999999888777664
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.1 Score=45.06 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=29.1
Q ss_pred CeEE-EE-ccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIG-WI-GTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~-iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+||+ |. |+|-+|+.++..|.+.||+|+++||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4795 55 6699999999999999999999998654
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=91.17 E-value=0.3 Score=40.51 Aligned_cols=83 Identities=11% Similarity=0.209 Sum_probs=48.9
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecC---ChhHHHHHhhC
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVG---YPSDVRHVLLH 125 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp---~~~~~~~v~~~ 125 (351)
|+.+| |.+.+|.++|+.|++.|.+|++..|+.++.+.+.+. ........+.+.++- +..++++++.
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 76 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAEL--------KAINPKVNITFHTYDVTVPVAESKKLLK- 76 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHH--------HHHCTTSEEEEEECCTTSCHHHHHHHHH-
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHH--------HhhCCCCCEEEEEeecCCCHHHHHHHHH-
Confidence 45555 557899999999999999988887776654443221 111123334444431 2234666666
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.....+=+++|+...
T Consensus 77 ---~~~~~~g~iDilvnnAG 93 (254)
T d1sbya1 77 ---KIFDQLKTVDILINGAG 93 (254)
T ss_dssp ---HHHHHHSCCCEEEECCC
T ss_pred ---HHHHHcCCCCEEEeCCC
Confidence 55554444456776543
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=91.11 E-value=0.053 Score=47.23 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.8
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeC
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNR 80 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr 80 (351)
.||||.|.| +|-+|+.++..|.+.|++|.++.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 379999996 799999999999999997655543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.09 E-value=0.028 Score=47.12 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.9
Q ss_pred EEEE--ccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 52 IGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 52 I~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
+++| |.+.+|.++|+.|++.|++|++.+|+.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 6777 56779999999999999999999998654
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.08 E-value=0.1 Score=37.24 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhh-h--h-hhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCC
Q 018694 229 TMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLD-L--H-GSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLAL 303 (351)
Q Consensus 229 ~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~-~--~-~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~ 303 (351)
++..+.|++. .+.+.|++.++..+++.....++..+- . . ...+.+...+||.+... .++..++.|++-
T Consensus 16 f~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~gs~~ll~~~~~~p~~l~~~V~SpgGtT~a-------gl~~le~~~~~~ 88 (104)
T d2ahra1 16 YIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIA-------GLMELERLGLTA 88 (104)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHH-------HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCChhHHH-------HHHHHHHCChHH
Confidence 6677777777 899999999999988877654433321 1 1 22333444556666543 557777888887
Q ss_pred cHHHHHHHHHHHHHH
Q 018694 304 PGLALAQQLYLSLKA 318 (351)
Q Consensus 304 p~~~~~~~l~~~~~~ 318 (351)
-+.+++...++++++
T Consensus 89 ~i~~a~~aA~~Rs~e 103 (104)
T d2ahra1 89 TVSSAIDKTIDKAKS 103 (104)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 788887777777654
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=91.04 E-value=1.4 Score=32.63 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=61.4
Q ss_pred CeEEEE---ccCh---hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh-----hH
Q 018694 50 TRIGWI---GTGV---MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP-----SD 118 (351)
Q Consensus 50 ~kI~iI---G~G~---mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~-----~~ 118 (351)
+|+.|| ..|+ |...|+..+.+.|++|.+++.+....+. ....+.++|.||+.+|.. ..
T Consensus 3 ~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~-----------~~~~~~~~d~ii~Gspt~~g~~~~~ 71 (149)
T d1ycga1 3 AKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRND-----------VIKEILDARAVLVGSPTINNDILPV 71 (149)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHH-----------HHHHHHHCSEEEEECCCBTTBCCGG
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHH-----------HhhhhhhCCeEEEEeecccCCCCHH
Confidence 577777 2343 6777888888999999998865432221 112234699999999643 24
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCC--CChhHHHHHHHHHhcCCCcEEe
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTT--SEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~--~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++..+. .+...-.+++.+.-..+ ......+.+.+.+...|...+.
T Consensus 72 ~~~~l~----~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~ 118 (149)
T d1ycga1 72 VSPLLD----DLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIA 118 (149)
T ss_dssp GHHHHH----HHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESC
T ss_pred HHHHHH----HHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEec
Confidence 555555 44332234443333322 1234456777777777776653
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.96 E-value=0.12 Score=41.87 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC---eEEEEeCCcccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRTLSKA 85 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~~~~~ 85 (351)
.||.|||.|.-|..++..|.+.|. +.+.+|.+...+
T Consensus 16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L 54 (209)
T d2vapa1 16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQL 54 (209)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHH
T ss_pred CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHH
Confidence 689999999999999999998776 445556654443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.69 E-value=0.14 Score=42.27 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=34.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHH---HCCCeEEEEeCCcccchhHH
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLL---NAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~---~~g~~V~~~dr~~~~~~~~~ 89 (351)
+|++|.|-|+ +.+|.++|+.|. +.|+.|++.+|++++++.+.
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~ 46 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE 46 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 3667877766 889999999986 47899999999988876653
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=90.64 E-value=0.13 Score=43.30 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=30.3
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCC-cccchhH
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRT-LSKAQPL 88 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~-~~~~~~~ 88 (351)
|.|+|| |.+.+|.++|+.|++.|++|++.+++ .+..+.+
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~ 43 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL 43 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHH
Confidence 458888 56789999999999999999986654 4444443
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=90.60 E-value=0.3 Score=37.88 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=26.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEe
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFN 79 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~d 79 (351)
.||||=|.|.+|+.+.+.+.+.+.+|+..+
T Consensus 1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaIN 30 (169)
T d1dssg1 1 SKIGINGFGRIGRLVLRAALEMGAQVVAVN 30 (169)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence 379999999999999999999888877664
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.45 E-value=0.22 Score=35.56 Aligned_cols=69 Identities=10% Similarity=0.203 Sum_probs=50.7
Q ss_pred CeEEEEccC----------hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHH
Q 018694 50 TRIGWIGTG----------VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 50 ~kI~iIG~G----------~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
.+|||+|.- .-..-+...|.+.|.+|.+||..-...+. ..+.....++++....+|+||+.. ....+
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~-~~~~~ 92 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNR-YDNEL 92 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSS-CCGGG
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcC-CchHH
Confidence 479999973 45677999999999999999987543222 235667789999999999776554 55544
Q ss_pred HH
Q 018694 120 RH 121 (351)
Q Consensus 120 ~~ 121 (351)
.+
T Consensus 93 ~~ 94 (108)
T d1dlja3 93 QD 94 (108)
T ss_dssp GG
T ss_pred Hh
Confidence 43
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=90.41 E-value=0.049 Score=45.87 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=25.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
|||.|.|+ |-+|+.+.+.|.+.|+.|. .+++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~ 32 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVH 32 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECC
Confidence 79999975 9999999999999887555 4443
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=90.25 E-value=0.057 Score=42.36 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEe
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFN 79 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~d 79 (351)
.+|.|||.|..|..+|..|.+.|.++.+..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 579999999999999999999888655443
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.07 E-value=0.21 Score=41.23 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.1
Q ss_pred eEEEE--ccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHh
Q 018694 51 RIGWI--GTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 51 kI~iI--G~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~ 90 (351)
|..+| |.+.+|.++|+.|++.|+ .|++..|+.++++.+.+
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 45555 568999999999999996 57778999888777654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.99 E-value=0.15 Score=41.85 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=30.3
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
-||.|. |.|.+|.++++.|++.|++|++.||+++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence 378777 55999999999999999999999998653
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=89.84 E-value=0.32 Score=37.94 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=24.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC----CeEEEEe
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFN 79 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~d 79 (351)
+|||||=|.|.+|+.+.+.+.+.+ .+|+..+
T Consensus 1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN 35 (173)
T d1obfo1 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN 35 (173)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence 379999999999999999988643 3555444
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.15 Score=40.77 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=29.1
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
-|.|||+|.-|...|..+++.|.+|++++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 3899999999999999999999999999975
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.67 E-value=0.3 Score=33.60 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=30.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|||.|||.|.=-.+|+..|.+..++|+++--|+.
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~G 34 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAG 34 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCcc
Confidence 7999999999999999999999999988865654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=89.65 E-value=0.17 Score=42.10 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=30.1
Q ss_pred CeEEEEcc-Ch--hhHHHHHHHHHCCCeEEEEeCCcccc
Q 018694 50 TRIGWIGT-GV--MGRSMCAHLLNAGYTVTVFNRTLSKA 85 (351)
Q Consensus 50 ~kI~iIG~-G~--mG~~ia~~L~~~g~~V~~~dr~~~~~ 85 (351)
+++.|.|+ |. +|.++|+.|++.|.+|++.+|+.++.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence 45666685 54 99999999999999999999987664
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.18 Score=43.62 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=28.2
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNR 80 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr 80 (351)
.||.|. |+|-+|+.+++.|.+.|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 589988 5699999999999999999999975
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.60 E-value=1.1 Score=33.99 Aligned_cols=92 Identities=9% Similarity=0.021 Sum_probs=51.8
Q ss_pred CeEEEE---ccChhhHH-HHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC--CHHHh-hcCCCEEEEecCChhHH---
Q 018694 50 TRIGWI---GTGVMGRS-MCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD--SPHSL-ASQSDVVFSIVGYPSDV--- 119 (351)
Q Consensus 50 ~kI~iI---G~G~mG~~-ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~--~~~~~-~~~~DiIi~~vp~~~~~--- 119 (351)
|||+|+ |.-.+=.. ....|.++|++|.++..+...+.. ..|..+.. +.+++ ..+.|+||++-......
T Consensus 1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~--~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~ 78 (166)
T d1g2ia_ 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITG--KHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRL 78 (166)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEEC--TTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEee--cCCcEEeccccHHHcCcccccEEEEecccchhhhcc
Confidence 678877 33333322 234578899999999876554432 23444332 34443 34679998876432221
Q ss_pred -HHHhhCCCCCcccCCCCCcEEEecCCCC
Q 018694 120 -RHVLLHPSSGALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 120 -~~v~~~~~~~i~~~l~~~~~ii~~s~~~ 147 (351)
+++.. -+......++.|..++++.
T Consensus 79 ~~~~~~----~l~~~~~~~k~i~aiC~G~ 103 (166)
T d1g2ia_ 79 NEKAVS----IARKMFSEGKPVASICHGP 103 (166)
T ss_dssp CHHHHH----HHHHHHHTTCCEEEETTTT
T ss_pred ChHHHH----HHHHHHhcCCeeeeccccc
Confidence 12222 2223345677888888774
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=89.52 E-value=0.15 Score=42.75 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.9
Q ss_pred eEEEEccChhhHHHHHHHHH-CCCeEEEEeCCcc
Q 018694 51 RIGWIGTGVMGRSMCAHLLN-AGYTVTVFNRTLS 83 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~-~g~~V~~~dr~~~ 83 (351)
.|.|||+|.-|...|..|++ .|++|+++++.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 49999999999999999987 5999999998754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.21 E-value=0.33 Score=37.90 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=54.9
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHh-----h--cCCCEEEEecCChhHHHHH
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSL-----A--SQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~-----~--~~~DiIi~~vp~~~~~~~v 122 (351)
+|.|. |+|.+|..-.+.....|.+|+...+++++.+.+++.|...+-+.++. + ...|.++-+| -...+.+.
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~V-gg~~~~~~ 112 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTV-GDKVLAKV 112 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESS-CHHHHHHH
T ss_pred cEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEc-chHHHHHH
Confidence 56666 66999999999999999999999999999887777664332222111 1 1246666666 44445544
Q ss_pred hhCCCCCcccCCCCCcEEEecCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+. . +.++..++.+..
T Consensus 113 l~----~----l~~~Griv~~G~ 127 (177)
T d1o89a2 113 LA----Q----MNYGGCVAACGL 127 (177)
T ss_dssp HH----T----EEEEEEEEECCC
T ss_pred HH----H----hccccceEeecc
Confidence 44 2 234555555543
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=89.11 E-value=0.17 Score=39.34 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=27.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEe
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFN 79 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~d 79 (351)
|||||=|+|++|+.+.+.|.+.+.+|+.++
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 699999999999999999999899988775
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.76 E-value=0.2 Score=44.13 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=27.9
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEe
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFN 79 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~d 79 (351)
|||.|.| +|-+|+.++..|.+.||+|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 7999995 59999999999999999999997
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.70 E-value=0.22 Score=40.06 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=29.6
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||+|.-|..-|..+++.|.+|+++++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 38999999999999999999999999999764
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.59 E-value=0.2 Score=42.40 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=30.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||.|..|...|..+++.|.+|+++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 59999999999999999999999999999875
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.44 E-value=0.11 Score=41.10 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=30.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.+|.|||.|..|..-|..+++.|.+|+++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 589999999999999999999999999998653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.23 E-value=0.27 Score=42.34 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=27.9
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNR 80 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr 80 (351)
++|.|. |+|-+|+.++..|.+.|++|.++|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 577777 6699999999999999999999986
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.14 E-value=0.52 Score=37.01 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=47.8
Q ss_pred CeEEEEcc--ChhhHHHHHHHHHCCCeEEEEeCCcc-----cchhHHh----c--CCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT--GVMGRSMCAHLLNAGYTVTVFNRTLS-----KAQPLLD----I--GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~--G~mG~~ia~~L~~~g~~V~~~dr~~~-----~~~~~~~----~--g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||++||= -++..+++..+..-|.++.++....- -.+.+.+ . .+....++++++.++|+|..-+
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~ 82 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV 82 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence 68999994 48999999999999999999986321 1111111 1 3567889999999999887654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.13 E-value=0.26 Score=42.22 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=27.3
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
++.|. |+|-+|+.++..|.+.||+|++++|..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 45555 569999999999999999999999854
|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein Ylr011wp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.39 E-value=1.2 Score=34.55 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=59.2
Q ss_pred CeEEEE-cc---ChhhHHHHHHHH----H------CCCeEEEEeCCcccchhHHhcC--------Cccc------CCHHH
Q 018694 50 TRIGWI-GT---GVMGRSMCAHLL----N------AGYTVTVFNRTLSKAQPLLDIG--------AHLA------DSPHS 101 (351)
Q Consensus 50 ~kI~iI-G~---G~mG~~ia~~L~----~------~g~~V~~~dr~~~~~~~~~~~g--------~~~~------~~~~~ 101 (351)
|||.+| |. |..+..++..+. + .|++|.++|.....+..+.... .... ....+
T Consensus 1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T d1t0ia_ 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (185)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence 688877 65 445566655443 3 3789999986433332221100 0000 01224
Q ss_pred hhcCCCEEEEecCCh-----hHHHHHhhCCCCCcccCCCCCcE--EEecCC-CChhHHHHHHHHHhcCCCcEEec
Q 018694 102 LASQSDVVFSIVGYP-----SDVRHVLLHPSSGALSGLRPGGI--IVDMTT-SEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~-----~~~~~v~~~~~~~i~~~l~~~~~--ii~~s~-~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+..+|.||+++|.. ..++..++ .+...+ .++. ++..+. +.......+...+...|..++..
T Consensus 81 ~i~~AD~iIi~tP~Y~~~~~~~lK~~iD----~~~~~~-~gKpv~ivs~g~~gg~~a~~~L~~~l~~~g~~vv~~ 150 (185)
T d1t0ia_ 81 IVNALDIIVFVTPQYNWGYPAALKNAID----RLYHEW-HGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIGG 150 (185)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHH----TCSTTT-TTCEEEEEEEETTTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCeEEEEeeecCCCcHHHHHHHH----HhhHHH-CCCEEEEEEEcCcchHHHHHHHHHHHHHCCCEEcCC
Confidence 467899999999753 45777777 444333 2333 333322 22222334455555557666654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.32 E-value=0.2 Score=40.24 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=29.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
-.|.|||+|..|...|..+++.|.+|++++++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 46999999999999999999999999999875
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=87.31 E-value=0.3 Score=39.41 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=29.8
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||.|.-|..-|..+++.|++|+++++++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999864
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.30 E-value=0.34 Score=41.08 Aligned_cols=34 Identities=26% Similarity=0.177 Sum_probs=29.3
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+||-|. |+|-+|+.++..|.+.||+|.+++|...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 367888 4599999999999999999999998654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.23 E-value=0.24 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=29.6
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||.|.-|...|..+++.|.+|+++++.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.31 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=28.8
Q ss_pred CeEEEEccChhhHHHHHHHH----HCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLL----NAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~----~~g~~V~~~dr~~~ 83 (351)
.+|.|||.|..|.-+|..|. +.|.+|+++++++.
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 47999999999999998885 35889999988654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.09 E-value=0.17 Score=41.30 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=34.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
.||..+|||. +..+..|++.|++|+.+|.++..++.++++
T Consensus 47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~ 86 (229)
T d2bzga1 47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFTE 86 (229)
T ss_dssp CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence 6899999998 366788899999999999999888776554
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.26 Score=38.55 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=30.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.+|.|||.|..|..-|..+++.|.+|+++++..
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 579999999999999999999999999998754
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=86.90 E-value=0.44 Score=39.45 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=50.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.||+|||. + .+...+.+.|.++.+++|++.. |.......++++.+||++|+.- ..-+-.-++ .
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl~----~ 185 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITC--ASVVDKTLP----R 185 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEET--HHHHHTCHH----H
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEe--chhhcCCHH----H
Confidence 68999986 4 5667788889999999999742 3334445677888999988854 222223333 4
Q ss_pred cccCCCCCcEEEecC
Q 018694 130 ALSGLRPGGIIVDMT 144 (351)
Q Consensus 130 i~~~l~~~~~ii~~s 144 (351)
++...++...++-+.
T Consensus 186 LL~~~~~a~~vvl~G 200 (251)
T d2h1qa1 186 LLELSRNARRITLVG 200 (251)
T ss_dssp HHHHTTTSSEEEEES
T ss_pred HHHhCCcCCEEEEEC
Confidence 444444555554444
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=86.74 E-value=0.82 Score=34.77 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=47.5
Q ss_pred CeEEEEcc--ChhhHHHHHHHHHCCCeEEEEeCCcccc-----h---hH-Hhc--CCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT--GVMGRSMCAHLLNAGYTVTVFNRTLSKA-----Q---PL-LDI--GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~--G~mG~~ia~~L~~~g~~V~~~dr~~~~~-----~---~~-~~~--g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||+++|= .++-.++...+..-|.+++++....-.. + .+ .+. .+....+++++++++|+|..-.
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 68999994 4799999999999999999887642111 1 11 111 2567789999999999998755
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=86.39 E-value=0.3 Score=41.67 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=30.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.-|.|||.|.-|...|..|+++|++|+++++.+.
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3499999999999999999999999999998753
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=86.24 E-value=0.32 Score=41.95 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=28.9
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
-+.|||.|.-|..+|..|+++|++|++..+-
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence 4899999999999999999999999999864
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.17 E-value=0.32 Score=42.17 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=28.4
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
|.|||.|.-|..+|..|+++|++|++..+-
T Consensus 5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 789999999999999999999999999874
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.38 Score=38.44 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=26.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVF 78 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~ 78 (351)
|||.|+|.+..|..+...|.+.|++|..+
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V 29 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV 29 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999998754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.72 E-value=0.42 Score=38.07 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=28.5
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+.|||.|..|...|..+++.|.+|.++++.
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 889999999999999999999999999875
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.56 E-value=0.43 Score=37.91 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=29.4
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.|.|||+|..|...|..+++.|.+|+++++..
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 48999999999999999999999999998753
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.53 E-value=0.79 Score=36.35 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.6
Q ss_pred eEEEEccChhhHHHHHHHHHCCC---eEEEEeCCcccch
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRTLSKAQ 86 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~~~~~~ 86 (351)
+|-|||.|.-|..++..|.+.|. +.+.+|.+...+.
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~ 41 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK 41 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence 69999999999999999999876 4555666655443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.45 E-value=0.3 Score=40.36 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=29.6
Q ss_pred ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 56 G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
|.+.+|.++|..|++.|++|.+.+|+.+..+.+..
T Consensus 8 as~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 8 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp TTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 44669999999999999999999999877666543
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.40 E-value=0.48 Score=38.58 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=29.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
++|.|.|+ |.+|.++++.|++.|++|.++|+++.
T Consensus 3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 56777765 88999999999999999999998754
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=85.33 E-value=0.42 Score=40.53 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=27.1
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeC
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNR 80 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr 80 (351)
||.|. |+|-+|+.+++.|.+.|++|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 78888 5699999999999999999999974
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=85.17 E-value=4.1 Score=31.84 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCcc----cchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCC
Q 018694 62 RSMCAHLLNAGYTVTVFNRTLS----KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPG 137 (351)
Q Consensus 62 ~~ia~~L~~~g~~V~~~dr~~~----~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~ 137 (351)
-..++.|.+.||+|.+=.---. .-+.+.+.|....++.+++..++|+|+-.- +|...+ .-. .....++++
T Consensus 20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~-~P~~~e-~~~----~ei~~lk~g 93 (194)
T d1l7da2 20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQ-RPMTAE-EGT----DEVALIKEG 93 (194)
T ss_dssp HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEE-CCCCGG-GSC----CGGGGSCTT
T ss_pred HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEec-CCcccc-cch----hHhhhccCc
Confidence 4567889999999996522111 124456679999999999999999777654 222111 111 223457799
Q ss_pred cEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 138 GIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 138 ~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
+++|.... |.....+.+.+..+++..+.--..
T Consensus 94 ~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194)
T d1l7da2 94 AVLMCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194)
T ss_dssp CEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred eEEEEecc--cccchhHHHHHHhcCceEEeeecc
Confidence 99998765 443445566666778887765333
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.17 E-value=0.38 Score=40.47 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=28.7
Q ss_pred CeEEEEccC---hhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTG---VMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G---~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+++.|-|++ .+|.++|+.|++.|.+|++.+|+++
T Consensus 9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~ 45 (297)
T d1d7oa_ 9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA 45 (297)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence 456666885 5999999999999999999998754
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=85.15 E-value=0.44 Score=36.13 Aligned_cols=61 Identities=18% Similarity=0.078 Sum_probs=46.6
Q ss_pred CeEEEEcc---ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT---GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~---G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||+++|= +++..+++..+..-|.+++++....-..+ +..+....++++++.++|+|..-.
T Consensus 4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r 67 (151)
T d2at2a2 4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLR 67 (151)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeE
Confidence 68999997 68999999999999999988876421111 224566778899999999886543
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.87 E-value=0.35 Score=38.99 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=29.6
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||+|.-|..-|..+++.|++|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999998764
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.82 E-value=0.57 Score=37.00 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG 72 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g 72 (351)
|+|||||=|.|.+|+.+.+.+.+.+
T Consensus 1 M~ikigINGFGRIGR~vlR~~~~~~ 25 (190)
T d1k3ta1 1 MPIKVGINGFGRIGRMVFQALCEDG 25 (190)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCChHHHHHHHHHHHcC
Confidence 4689999999999999999887754
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=84.77 E-value=0.4 Score=41.63 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=28.7
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
-+.|||.|.-|..+|..|+++|++|++..+-
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3889999999999999999999999999874
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.70 E-value=0.44 Score=41.03 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=29.8
Q ss_pred CeEEEE-ccC---hhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWI-GTG---VMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iI-G~G---~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
-||++| |+| .+|.++|+.|++.|.+|.+.+++...
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~ 40 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVY 40 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhh
Confidence 368888 876 69999999999999999998887543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.40 E-value=1.9 Score=33.36 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=52.2
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEeCCcccch----hHHhcCCcccCCH------------HHh----hcCCC
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ----PLLDIGAHLADSP------------HSL----ASQSD 107 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~----~~~~~g~~~~~~~------------~~~----~~~~D 107 (351)
.++.|+ |.|.+|.+..+.....|.+|+...++++..+ .+++.|....-+. .+. -...|
T Consensus 30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~vd 109 (189)
T d1gu7a2 30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAK 109 (189)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEE
T ss_pred CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCce
Confidence 358888 6789999998888888999988877655443 3344454322111 111 12467
Q ss_pred EEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 108 iIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
++|-|+ ....+...+. .+.++..++...
T Consensus 110 vv~D~v-g~~~~~~~~~--------~l~~~G~~v~~G 137 (189)
T d1gu7a2 110 LALNCV-GGKSSTGIAR--------KLNNNGLMLTYG 137 (189)
T ss_dssp EEEESS-CHHHHHHHHH--------TSCTTCEEEECC
T ss_pred EEEECC-Ccchhhhhhh--------hhcCCcEEEEEC
Confidence 888888 5555555554 234555666553
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=84.36 E-value=0.49 Score=36.38 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=28.4
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
.|.|||.|..|..-|..+++.|.+|+++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3899999999999999999999999999864
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=84.29 E-value=0.9 Score=34.29 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=44.4
Q ss_pred CeEEEEccC---hhhHHHHHHHHHCCCeEEEEeCCcccc--hh-HHhc--CCcccCCHHHhhcCCCEEEEe
Q 018694 50 TRIGWIGTG---VMGRSMCAHLLNAGYTVTVFNRTLSKA--QP-LLDI--GAHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 50 ~kI~iIG~G---~mG~~ia~~L~~~g~~V~~~dr~~~~~--~~-~~~~--g~~~~~~~~~~~~~~DiIi~~ 112 (351)
.||+|||=+ ++..+++..+..-|.+++++...+... +. .... .+...+++++++.++|+|..-
T Consensus 4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 689999974 489999999999999876554432111 11 1112 456678999999999988753
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.13 E-value=0.37 Score=39.33 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=57.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CC--c-ccCCHHHh--hcCCCEEEEe------cC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GA--H-LADSPHSL--ASQSDVVFSI------VG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~--~-~~~~~~~~--~~~~DiIi~~------vp 114 (351)
.+|.=||||. ..++..|++.|.+|+++|.|++-++..+++ +. . ...+..+. -...|+|+.. ++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~ 116 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII 116 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccC
Confidence 5799999983 346667788899999999998766554332 32 2 12333332 2346888753 23
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcE-EEecC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGI-IVDMT 144 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~-ii~~s 144 (351)
...+...++. ++...+++|.. ++++.
T Consensus 117 ~~~~~~~~l~----~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 117 DSDDLKKYFK----AVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp SHHHHHHHHH----HHHTTEEEEEEEEEEEE
T ss_pred CHHHHHHHHH----HHHHhCCCCeEEEEEeC
Confidence 4557777887 78788877664 55543
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.51 Score=39.75 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=25.0
Q ss_pred CeEEEE--ccChhhHHHHHHHHHCCCeEEEEe
Q 018694 50 TRIGWI--GTGVMGRSMCAHLLNAGYTVTVFN 79 (351)
Q Consensus 50 ~kI~iI--G~G~mG~~ia~~L~~~g~~V~~~d 79 (351)
+||.+| |.+.+|.++|+.|++.|.+|+.+.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~ 33 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVY 33 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 589888 568999999999999998765443
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=83.75 E-value=0.86 Score=36.21 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVF 78 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~ 78 (351)
..|||.|+|.+..+..+.+.|.+.|++|..+
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~~~~~~i~~V 32 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALLSSGHNVVGV 32 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999999987644
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=83.70 E-value=6.4 Score=28.79 Aligned_cols=102 Identities=12% Similarity=-0.048 Sum_probs=61.7
Q ss_pred CeEEEE-c--cC---hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh-----hH
Q 018694 50 TRIGWI-G--TG---VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP-----SD 118 (351)
Q Consensus 50 ~kI~iI-G--~G---~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~-----~~ 118 (351)
.||.|| + .| .|...|+..|.+.|++|.+++.+....+. ....+.++|.||+.+|.. ..
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~~ 71 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILPY 71 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCHH
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCch
Confidence 478877 3 34 35677888888899999999876432211 122356899999999652 34
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCC--CChhHHHHHHHHHhcCCCcEE
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTT--SEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~--~~~~~~~~l~~~~~~~~~~~v 166 (351)
+...+. .+...-.+++.+.-.++ ........+.+.+...|...+
T Consensus 72 ~~~~l~----~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v 117 (152)
T d1e5da1 72 VAGTLQ----YIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMP 117 (152)
T ss_dssp HHHHHH----HHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCC
T ss_pred hHHHHH----HhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEe
Confidence 555665 33322234444333333 233445677778877776554
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=83.49 E-value=0.26 Score=38.37 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=32.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
.||..||||.= ..+..|++.|++|+++|.|++-++..+++
T Consensus 22 ~rvLd~GCG~G--~~a~~la~~G~~V~gvD~S~~~i~~a~~~ 61 (201)
T d1pjza_ 22 ARVLVPLCGKS--QDMSWLSGQGYHVVGAELSEAAVERYFTE 61 (201)
T ss_dssp CEEEETTTCCS--HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred CEEEEecCcCC--HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence 68999999974 46667888899999999998877776553
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=83.43 E-value=0.59 Score=40.76 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.0
Q ss_pred CeEEEE-ccChhhHHHHHHHHH-CCCeEEEEeC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLN-AGYTVTVFNR 80 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~-~g~~V~~~dr 80 (351)
|||.|. |+|-+|+.++..|.+ .|++|+++|+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~ 35 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence 699998 569999999999974 8999999984
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.23 E-value=0.51 Score=39.92 Aligned_cols=95 Identities=11% Similarity=0.245 Sum_probs=59.1
Q ss_pred CeEEEEccChhhHHHHHHHHHC----CC-------eEEEEeCCc----cc---chhHHh----cC-CcccCCHHHhhc--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA----GY-------TVTVFNRTL----SK---AQPLLD----IG-AHLADSPHSLAS-- 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~----g~-------~V~~~dr~~----~~---~~~~~~----~g-~~~~~~~~~~~~-- 104 (351)
.||.|.|+|.-|..++..+... |. +++++|+.- ++ ....+. .. -....++.++++
T Consensus 26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~ 105 (294)
T d1pj3a1 26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNIL 105 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhc
Confidence 5799999999999999987654 33 599888742 11 111111 11 122346778765
Q ss_pred CCCEEEEecCC-hhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 105 QSDVVFSIVGY-PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 105 ~~DiIi~~vp~-~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.+|++|-+... ....+++++ .+.. ..++-+|.-++|-.+.
T Consensus 106 kptvliG~S~~~g~ft~evi~----~Ma~-~~~~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 106 KPSTIIGVAGAGRLFTPDVIR----AMAS-INERPVIFALSNPTAQ 146 (294)
T ss_dssp CCSEEEECCCSSCCSCHHHHH----HHHH-HCSSCEEEECCSSGGG
T ss_pred CCceEEEecCCCCcCCHHHHH----HHHh-cCCCcEEEEccCCCCc
Confidence 67777776633 334455665 4432 4577799999996554
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.13 E-value=1 Score=34.05 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=47.7
Q ss_pred CeEEEEcc---ChhhHHHHHHHHHCCCeEEEEeCCccc-----chhHHhcC--CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGT---GVMGRSMCAHLLNAGYTVTVFNRTLSK-----AQPLLDIG--AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~---G~mG~~ia~~L~~~g~~V~~~dr~~~~-----~~~~~~~g--~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||+|||= +++..+++..+..-|.+++++....-. .+.+.+.+ +..+.++++++.++|+|..-.
T Consensus 5 l~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~ 78 (157)
T d1ml4a2 5 LKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR 78 (157)
T ss_dssp EEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred CEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence 68999998 678999999999999999988754222 12223333 456789999999999877654
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.89 E-value=0.44 Score=40.49 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=30.1
Q ss_pred CeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~ 83 (351)
.+|.|||+|.-|..-|..|++ .|++|+++++++.
T Consensus 51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 459999999999999999985 4999999998754
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.86 E-value=0.57 Score=41.18 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.1
Q ss_pred eEEEEccChhhHHHHHHHHH------CCCeEEEEeCCcc
Q 018694 51 RIGWIGTGVMGRSMCAHLLN------AGYTVTVFNRTLS 83 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~------~g~~V~~~dr~~~ 83 (351)
-|.|||+|.-|++-|..|++ .|++|+++++...
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 59999999999999999987 8999999998754
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=82.74 E-value=0.64 Score=38.21 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=28.6
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+.|||+|.-|...|..+++.|.+|.+++++
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999999999999975
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.68 E-value=0.92 Score=35.93 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.1
Q ss_pred eEEEEccChhhHHHHHHHHHCCC---eEEEEeCCcc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRTLS 83 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~~~ 83 (351)
+|-|||.|..|..+..+|.+.|. +.+.++.+..
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~ 38 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQ 38 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHH
Confidence 68899999999999999999876 4445555533
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.66 E-value=0.41 Score=38.09 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=55.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCc---ccCCHHHhh---cCCCEEEEecC----C
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAH---LADSPHSLA---SQSDVVFSIVG----Y 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~~~~---~~~DiIi~~vp----~ 115 (351)
.||.=||||. ..++..|++.|.+|+++|.|++-++..++. +.. ...+..++. ...|+|+..-. +
T Consensus 39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 5899999998 335567788899999999998876555432 211 122333221 34577665431 2
Q ss_pred hhHHHHHhhCCCCCcccCCCCCc-EEEecCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGG-IIVDMTT 145 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~-~ii~~s~ 145 (351)
+.+...++. ++...+.+|. +++...+
T Consensus 117 ~~d~~~~l~----~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 117 PLELNQVFK----EVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHH----HHHHHEEEEEEEEEEEEC
T ss_pred hhHHHHHHH----HHHHHcCcCcEEEEEEcC
Confidence 335566777 7777777766 4555443
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=82.66 E-value=0.46 Score=41.35 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=25.9
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEE-EEeC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVT-VFNR 80 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~-~~dr 80 (351)
|||.|. |+|-+|+.++..|.+.|++|+ ++|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 799999 569999999999999999754 4554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=82.62 E-value=0.53 Score=38.93 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=60.3
Q ss_pred CeEEEEccCh--hhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C----Cc-ccCCHHHhh--cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGV--MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G----AH-LADSPHSLA--SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~--mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g----~~-~~~~~~~~~--~~~DiIi~~vp~~ 116 (351)
+||.=+|||. +...+|+.+... -.|+.+|++++.++..+++ + +. ...+..+.. ...|.||+-+|.+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~p 165 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDP 165 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSCG
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCCch
Confidence 6899998765 455566655433 3899999998877665543 1 11 112333322 3479999988776
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..+ +. .+...+++|..++...-. ....+++.+.+.+.|.
T Consensus 166 ~~~---l~----~~~~~LKpGG~lv~~~P~-i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 166 WNH---VQ----KIASMMKPGSVATFYLPN-FDQSEKTVLSLSASGM 204 (250)
T ss_dssp GGS---HH----HHHHTEEEEEEEEEEESS-HHHHHHHHHHSGGGTE
T ss_pred HHH---HH----HHHHhcCCCceEEEEeCC-cChHHHHHHHHHHCCC
Confidence 543 22 333345677766643321 3334556666655553
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=82.57 E-value=0.58 Score=41.03 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=25.3
Q ss_pred CeEEEEc-------cChhh---HHHHHHHHHCCCeEEEEeC
Q 018694 50 TRIGWIG-------TGVMG---RSMCAHLLNAGYTVTVFNR 80 (351)
Q Consensus 50 ~kI~iIG-------~G~mG---~~ia~~L~~~g~~V~~~dr 80 (351)
|||.+|+ +|.+| ..+++.|++.||+|+++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 7899987 36665 5679999999999999863
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=0.42 Score=40.33 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.8
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+||.|. |+|.+|+.+++.|.+.|+.|++.++.
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 689999 55999999999999999998877654
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.34 E-value=2.3 Score=31.38 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCeEEEE-cc--C---hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh-----h
Q 018694 49 NTRIGWI-GT--G---VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP-----S 117 (351)
Q Consensus 49 ~~kI~iI-G~--G---~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~-----~ 117 (351)
..||.|| |. | .|...|+..|.+.|++|.+++.+......+. +...-+.++|.+++++|.. .
T Consensus 3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~--------~~~~~l~~~d~iiigspt~~~~~~~ 74 (148)
T d1vmea1 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAIS--------EILKDIPDSEALIFGVSTYEAEIHP 74 (148)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHH--------HHHHHSTTCSEEEEEECEETTEECH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchh--------HhhhhHHHCCEeEEEecccCCccCc
Confidence 3678888 33 4 3677788888889999999876543211111 1122356899999999632 2
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC-C-ChhHHHHHHHHHhcCCCcEE
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT-S-EPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~-~-~~~~~~~l~~~~~~~~~~~v 166 (351)
.+...+. .+...-.+++.+.-.++ + .....+.+.+.+...|..++
T Consensus 75 ~~~~~l~----~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v 121 (148)
T d1vmea1 75 LMRFTLL----EIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRIL 121 (148)
T ss_dssp HHHHHHH----HHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEE
T ss_pred hHHHHHH----HHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEE
Confidence 4555554 44332234444333333 1 12234567777776676665
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=82.05 E-value=0.58 Score=37.96 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=25.1
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
|+=-..|.||.+||..+...|++|+++...
T Consensus 26 ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~ 55 (223)
T d1u7za_ 26 ISDHSSGKMGFAIAAAAARRGANVTLVSGP 55 (223)
T ss_dssp EEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred eccCCcHHHHHHHHHHHHHcCCchhhhhcc
Confidence 344467999999999999999999988653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.92 E-value=0.84 Score=35.60 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=53.1
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHh-cCCcc-----cCCHHHhhc-----CCCEEEEecCCh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLD-IGAHL-----ADSPHSLAS-----QSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~-~g~~~-----~~~~~~~~~-----~~DiIi~~vp~~ 116 (351)
..|.|.| +|.+|....+.....|.+ |+.++.++++...+.. .|... ..+..+.+. .+|+||-|+ -.
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~v-Gg 110 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNV-GG 110 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESS-CH
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecC-Cc
Confidence 3588887 699999999988888876 4455666666555543 34321 223333332 388888888 45
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
..++..+. .+.++..++.+.
T Consensus 111 ~~~~~~~~--------~l~~~G~iv~~G 130 (187)
T d1vj1a2 111 DISNTVIS--------QMNENSHIILCG 130 (187)
T ss_dssp HHHHHHHT--------TEEEEEEEEEC-
T ss_pred hhHHHHhh--------hccccccEEEec
Confidence 55665554 234565666554
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=81.60 E-value=0.64 Score=40.38 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=28.1
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+.|||.|.-|+.+|..|+++|++|.+..+-
T Consensus 5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 789999999999999999999999999765
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.52 E-value=0.81 Score=36.37 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=26.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVF 78 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~ 78 (351)
|||.|+|.+.+|....+.|.++|++|..+
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~V 29 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAAGYEISAI 29 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEecCHHHHHHHHHHHHCCCCEEEE
Confidence 79999999999999999999999998644
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=81.35 E-value=0.65 Score=36.79 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=29.5
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
-|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 38999999999999999999999999998764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=81.31 E-value=3.5 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC--CCeEEEE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA--GYTVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~--g~~V~~~ 78 (351)
|.||+|+|. |.+|..-..-+.+. .++|...
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~L 33 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVAL 33 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEE
Confidence 568999987 99999999888775 3566654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=81.26 E-value=1.5 Score=35.73 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=28.4
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccc
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKA 85 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~ 85 (351)
.|.|.| .|.+|.++++.|++.|+ .|+++.|+....
T Consensus 11 t~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~ 47 (259)
T d2fr1a1 11 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA 47 (259)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH
Confidence 566775 69999999999999998 588888875443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.24 E-value=0.51 Score=38.41 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=56.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCc---ccCCHHHhh--cCCCEEEEec-----CC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAH---LADSPHSLA--SQSDVVFSIV-----GY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~~~~--~~~DiIi~~v-----p~ 115 (351)
.||.=||||. | .++..|++.|.+|+++|.+++-++..+++ +.. ...+..++- ...|+|+++- ..
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~ 120 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSC
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcCC
Confidence 5899999997 4 44566888999999999998766555443 322 122333321 3467777642 23
Q ss_pred hhHHHHHhhCCCCCcccCCCCCc-EEEecC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGG-IIVDMT 144 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~-~ii~~s 144 (351)
..+...++. ++...+++|. ++++..
T Consensus 121 ~~~~~~~L~----~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 121 EEDLRKLFS----KVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHHHH----HHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHH----HHHHHcCCCcEEEEEec
Confidence 345566777 6777777766 455544
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=81.14 E-value=1.4 Score=34.17 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=47.3
Q ss_pred CeEEEEccC--hhhHHHHHHHHHCCCeEEEEeCCccc----c----hhH-HhcC--CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTG--VMGRSMCAHLLNAGYTVTVFNRTLSK----A----QPL-LDIG--AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G--~mG~~ia~~L~~~g~~V~~~dr~~~~----~----~~~-~~~g--~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||+++|=| ++..+++..+..-|.+++++....-. . +.. ...| +..+.++++++.++|+|..-+
T Consensus 6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 82 (183)
T d1duvg2 6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 82 (183)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence 689999965 79999999999889999998763211 1 111 1123 456789999999999988755
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.62 E-value=1.7 Score=33.07 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=45.0
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcc-----cchhHHhc------CCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLS-----KAQPLLDI------GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~-----~~~~~~~~------g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||+++|-| ++..+++..+..-|.+|+++....- ..+...+. .+....++++++.++|+|..-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 689999974 4667788888888999999875321 11222211 2566789999999999887643
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=80.53 E-value=0.25 Score=42.22 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=23.0
Q ss_pred CeEEEE-ccChhhHHHHHHHHHCCCeE
Q 018694 50 TRIGWI-GTGVMGRSMCAHLLNAGYTV 75 (351)
Q Consensus 50 ~kI~iI-G~G~mG~~ia~~L~~~g~~V 75 (351)
|||.|. |+|-+|+.++..|.+.|++|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v 27 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPD 27 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 799999 56999999999999999843
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.46 E-value=1.2 Score=36.12 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=54.9
Q ss_pred CeEEEEccCh--hhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C-Ccc----cCCHH---HhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGV--MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G-AHL----ADSPH---SLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~--mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g-~~~----~~~~~---~~~~~~DiIi~~vp~ 115 (351)
+||.=+|||. ....++...-.. -.|+.+|.++..++.+.+. + +.. ...++ ......|+|+.-++.
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~ 153 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ 153 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred CEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEccc
Confidence 7899997754 444455543333 3899999998877666543 1 110 11122 223456888888766
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEE
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIV 141 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii 141 (351)
+.+...++. ++...++++..++
T Consensus 154 ~~~~~~~l~----~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 154 PTQAKILID----NAEVYLKRGGYGM 175 (227)
T ss_dssp TTHHHHHHH----HHHHHEEEEEEEE
T ss_pred cchHHHHHH----HHHHhcccCCeEE
Confidence 777777777 7777777777554
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.41 E-value=0.63 Score=39.50 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.-|.|||.|..|..-|..+++.|.+|+++++.+
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 459999999999999999999999999999864
|
| >d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=80.39 E-value=8 Score=29.38 Aligned_cols=106 Identities=13% Similarity=0.005 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC--Cchhhhhh--hhhcccCCCCCccchhhHHHHH----HHHHHHHHhc
Q 018694 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAA--GSKSLDLH--GSRILKRDFEPGFFVNHFVKDL----GICLKECQNM 299 (351)
Q Consensus 228 ~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~--~s~~~~~~--~~~~~~~~~~~~~~~~~~~kd~----~~~~~~a~~~ 299 (351)
.+.++=.|-.+++++.|++...+.+....... .+...+.. .+.+........+.-..+.-|+ -.+..+|+..
T Consensus 46 ~l~alD~Er~aIa~alg~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~P~~~~hRYi~EDvp~GLv~~~~la~~~ 125 (172)
T d1bg6a1 46 LAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYFFEDVSTGLVPLSELGRAV 125 (172)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSCCHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcCCCcchHHHHHhcCccccCCCCCCCccccceeccccchHHHHHHHHHHh
Confidence 34455668788888888876555554433221 11111111 1111111111122223444454 3678899999
Q ss_pred CCCCcHHHHHHHHHHHHHHc------------CCCCCChHHHHHHH
Q 018694 300 GLALPGLALAQQLYLSLKAH------------GEGNLGTQALILAL 333 (351)
Q Consensus 300 gv~~p~~~~~~~l~~~~~~~------------g~~~~d~~~~~~~~ 333 (351)
|+++|+++.+..+-.....+ |.+..+..++.+.+
T Consensus 126 gV~tP~i~~ii~~a~~~~g~d~~~~Grtl~~lgl~~~s~~~l~~~~ 171 (172)
T d1bg6a1 126 NVPTPLIDAVLDLISSLIDTDFRKEGRTLEKLGLSGLTAAGIRSAV 171 (172)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHSCCTTTTTCTTCCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHCcCHHhcCCCHHHCCCCCCCHHHHHHHh
Confidence 99999999998887776544 34555666555443
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=80.02 E-value=1.2 Score=38.04 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=26.0
Q ss_pred CeEEEEccChh-----hHHHHHHHHHCCCeEEEEeC
Q 018694 50 TRIGWIGTGVM-----GRSMCAHLLNAGYTVTVFNR 80 (351)
Q Consensus 50 ~kI~iIG~G~m-----G~~ia~~L~~~g~~V~~~dr 80 (351)
|||.|.+.|.- ..++|+.|.++||+|+++..
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~ 36 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAP 36 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 79999988864 35689999999999998873
|