Citrus Sinensis ID: 018698

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccHHHcccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHcccEEEcccccccccccccEEEEcc
ccHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEHHHHHHHHHccccEEEcccccccccHHHHcEEEEc
memdslpngnsaaasppqnptpaaaggmtpfpklTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNvadvsdsenfskddaVNHLTSLVSRLqglkrkdlVDIEVFQEAKKVIDALQnkevapalawcsdnksrlkksksKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKsntecttykalfepkqwdFLVDQFKQEFCKLYGMTLEPLLNIYLQAGlsalntpycyeddctkedplsqesfrklasplpyskqhhsKLVCYITKelmdtenppqvlpngyvySTKALEEMAKknngkitcprtglvcnySDLVKAYIS
memdslpngnsaaasppqNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVsrlqglkrkdLVDIEVFQEAKKVIDAlqnkevapalawcsdnksrlkkskskfEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLasplpyskqhHSKLVCYITKELmdtenppqvlpNGYVYSTKALEEMAKKnngkitcprtglvcnysdlvkayis
MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS
*********************************LTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVAD***********AVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSD**********KFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCT***********************HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY**
****************************************************************AVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS
***********************AAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS
********GN**AASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query351 2.2.26 [Sep-21-2011]
Q7SXR3396 Macrophage erythroblast a yes no 0.706 0.626 0.431 3e-56
Q6GR10396 Macrophage erythroblast a N/A no 0.686 0.608 0.434 2e-55
Q5F398396 Macrophage erythroblast a yes no 0.706 0.626 0.423 3e-55
Q5RKJ1396 Macrophage erythroblast a yes no 0.706 0.626 0.419 2e-54
Q4VC33396 Macrophage erythroblast a yes no 0.706 0.626 0.419 2e-54
Q4R9A8396 Macrophage erythroblast a N/A no 0.706 0.626 0.411 1e-53
Q5R532396 Macrophage erythroblast a yes no 0.706 0.626 0.411 1e-53
Q7L5Y9396 Macrophage erythroblast a yes no 0.706 0.626 0.411 1e-53
Q3MHJ2434 Macrophage erythroblast a yes no 0.706 0.571 0.358 6e-49
Q5AS80406 Protein fyv10 OS=Emericel yes no 0.660 0.571 0.361 1e-39
>sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher OS=Danio rerio GN=maea PE=2 SV=2 Back     alignment and function desciption
 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/255 (43%), Positives = 165/255 (64%), Gaps = 7/255 (2%)

Query: 99  VSRLQGLKRKDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 158
           ++R  G++  DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSRL+K KS  EF LR+
Sbjct: 145 LARQSGIE--DLVNIEMFLTAKEVEESLERQETATCLAWCHDNKSRLRKMKSCLEFSLRI 202

Query: 159 QEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQ 218
           QEFIEL+R    + A+ +ARK+ +      + E+++VM  LAF S+T  + YK L +P +
Sbjct: 203 QEFIELIRQNKRMDAVRHARKHFSQAEGGQLDEVRQVMGMLAFPSDTHISPYKDLLDPAR 262

Query: 219 WDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKED---PLSQESFR 275
           W  L+ QF+ +  +L+ +    +  I LQAGLSA+ TP CY++D T ++   P+  +S  
Sbjct: 263 WKMLIQQFRYDNYRLHQLGNNSVFTITLQAGLSAIKTPQCYKEDGTSKNPDCPVCSKSLN 322

Query: 276 KLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPR 335
           KLA PLP +   +S+LVC I+ E+M+  NPP +LPNGYVY   +L  ++ + + K+ CPR
Sbjct: 323 KLAQPLPMAHCANSRLVCKISGEVMNENNPPMMLPNGYVYGYNSL--LSIRQDDKVICPR 380

Query: 336 TGLVCNYSDLVKAYI 350
           T  V N+S   K YI
Sbjct: 381 TKEVFNFSQAEKVYI 395
May play a possible role in erythroblast and macrophages maturation. May associate with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.
Danio rerio (taxid: 7955)
>sp|Q6GR10|MAEA_XENLA Macrophage erythroblast attacher OS=Xenopus laevis GN=maea PE=2 SV=2 Back     alignment and function description
>sp|Q5F398|MAEA_CHICK Macrophage erythroblast attacher OS=Gallus gallus GN=MAEA PE=2 SV=1 Back     alignment and function description
>sp|Q5RKJ1|MAEA_RAT Macrophage erythroblast attacher OS=Rattus norvegicus GN=Maea PE=2 SV=2 Back     alignment and function description
>sp|Q4VC33|MAEA_MOUSE Macrophage erythroblast attacher OS=Mus musculus GN=Maea PE=1 SV=1 Back     alignment and function description
>sp|Q4R9A8|MAEA_MACFA Macrophage erythroblast attacher OS=Macaca fascicularis GN=MAEA PE=2 SV=1 Back     alignment and function description
>sp|Q5R532|MAEA_PONAB Macrophage erythroblast attacher OS=Pongo abelii GN=MAEA PE=2 SV=1 Back     alignment and function description
>sp|Q7L5Y9|MAEA_HUMAN Macrophage erythroblast attacher OS=Homo sapiens GN=MAEA PE=1 SV=1 Back     alignment and function description
>sp|Q3MHJ2|MAEA_BOVIN Macrophage erythroblast attacher OS=Bos taurus GN=MAEA PE=2 SV=1 Back     alignment and function description
>sp|Q5AS80|FYV10_EMENI Protein fyv10 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fyv10 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
224098160412 predicted protein [Populus trichocarpa] 0.991 0.844 0.655 1e-149
255568187414 erythroblast macrophage protein emp, put 0.994 0.842 0.668 1e-146
15233170418 LisH/CRA/RING-U-box domain-containing pr 0.997 0.837 0.615 1e-142
449451687 469 PREDICTED: macrophage erythroblast attac 1.0 0.748 0.647 1e-137
297816802418 hypothetical protein ARALYDRAFT_485927 [ 1.0 0.839 0.598 1e-134
356574997414 PREDICTED: macrophage erythroblast attac 0.689 0.584 0.909 1e-126
356536518414 PREDICTED: macrophage erythroblast attac 0.689 0.584 0.909 1e-126
225448765412 PREDICTED: macrophage erythroblast attac 0.675 0.575 0.897 1e-124
357445017 873 Macrophage erythroblast attacher [Medica 0.695 0.279 0.864 1e-119
115462239406 Os05g0160100 [Oryza sativa Japonica Grou 0.689 0.596 0.774 1e-114
>gi|224098160|ref|XP_002311128.1| predicted protein [Populus trichocarpa] gi|222850948|gb|EEE88495.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/415 (65%), Positives = 305/415 (73%), Gaps = 67/415 (16%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           MEMDSLPNGNS   +     T  +    +   KLTQLTE+LKLEHQFLRVPFEHYKKTIR
Sbjct: 1   MEMDSLPNGNSTIPTTIIPTTTPSTALSS---KLTQLTESLKLEHQFLRVPFEHYKKTIR 57

Query: 61  TNHRAVEKEITSVISNVADVS--------------------------------------- 81
           TNHRAVEKE++SVIS V D +                                       
Sbjct: 58  TNHRAVEKEVSSVISVVNDAADSDISNDDAVQHLTSLVSRLQGLKRKLEEGSRTENLQAQ 117

Query: 82  ------------DSENFS-------KDDAVNHLTSLVSRLQGLKRK------DLVDIEVF 116
                       D+EN S       K   V+++  +     GLK        DLVDI+VF
Sbjct: 118 RCRARIDHLESADAENLSEWNNMRMKRILVDYMLRMSYYDTGLKLAESSDMLDLVDIDVF 177

Query: 117 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITY 176
            E+K+VIDALQ +EVAPALAWC+DNK+RLKKSKSKFEFQLRLQE++ELVR E++LRAITY
Sbjct: 178 LESKRVIDALQKREVAPALAWCADNKTRLKKSKSKFEFQLRLQEYVELVRAEDHLRAITY 237

Query: 177 ARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGM 236
           ARKYLAPW ATHMKE+QRV A +AFKSN EC  YK  FEPKQWD+LV+QFKQEFC+LYGM
Sbjct: 238 ARKYLAPWAATHMKEMQRVFAIVAFKSNPECAVYKVFFEPKQWDYLVEQFKQEFCRLYGM 297

Query: 237 TLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYIT 296
           TLEPLLNI+LQAGLSAL TPYCYEDDCTKEDPLSQESFRKLA PLPYSKQHHSKLVCYIT
Sbjct: 298 TLEPLLNIFLQAGLSALKTPYCYEDDCTKEDPLSQESFRKLALPLPYSKQHHSKLVCYIT 357

Query: 297 KELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 351
           KELMDTENPPQVLPNGYVYSTKALEEMAK+N+GKITCPRTGLVCNYS++VKA+IS
Sbjct: 358 KELMDTENPPQVLPNGYVYSTKALEEMAKRNDGKITCPRTGLVCNYSEVVKAFIS 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568187|ref|XP_002525069.1| erythroblast macrophage protein emp, putative [Ricinus communis] gi|223535650|gb|EEF37316.1| erythroblast macrophage protein emp, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15233170|ref|NP_191067.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] gi|7329637|emb|CAB82702.1| putative protein [Arabidopsis thaliana] gi|111074420|gb|ABH04583.1| At3g55070 [Arabidopsis thaliana] gi|332645814|gb|AEE79335.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449451687|ref|XP_004143593.1| PREDICTED: macrophage erythroblast attacher-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816802|ref|XP_002876284.1| hypothetical protein ARALYDRAFT_485927 [Arabidopsis lyrata subsp. lyrata] gi|297322122|gb|EFH52543.1| hypothetical protein ARALYDRAFT_485927 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356574997|ref|XP_003555629.1| PREDICTED: macrophage erythroblast attacher-like [Glycine max] Back     alignment and taxonomy information
>gi|356536518|ref|XP_003536784.1| PREDICTED: macrophage erythroblast attacher-like [Glycine max] Back     alignment and taxonomy information
>gi|225448765|ref|XP_002281688.1| PREDICTED: macrophage erythroblast attacher [Vitis vinifera] gi|297736449|emb|CBI25320.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357445017|ref|XP_003592786.1| Macrophage erythroblast attacher [Medicago truncatula] gi|355481834|gb|AES63037.1| Macrophage erythroblast attacher [Medicago truncatula] Back     alignment and taxonomy information
>gi|115462239|ref|NP_001054719.1| Os05g0160100 [Oryza sativa Japonica Group] gi|51038108|gb|AAT93911.1| unknown protein [Oryza sativa Japonica Group] gi|55168055|gb|AAV43923.1| unknown protein [Oryza sativa Japonica Group] gi|113578270|dbj|BAF16633.1| Os05g0160100 [Oryza sativa Japonica Group] gi|125550933|gb|EAY96642.1| hypothetical protein OsI_18556 [Oryza sativa Indica Group] gi|215707056|dbj|BAG93516.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630285|gb|EEE62417.1| hypothetical protein OsJ_17208 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
TAIR|locus:2097248418 AT3G55070 "AT3G55070" [Arabido 0.692 0.581 0.817 2.7e-107
DICTYBASE|DDB_G0284463423 maea "CT11-RanBPM domain-conta 0.700 0.581 0.483 6.8e-71
ZFIN|ZDB-GENE-030131-294396 maea "macrophage erythroblast 0.706 0.626 0.431 4.2e-61
MGI|MGI:1891748396 Maea "macrophage erythroblast 0.706 0.626 0.419 5.4e-59
RGD|1309877396 Maea "macrophage erythroblast 0.706 0.626 0.419 5.4e-59
UNIPROTKB|Q7L5Y9396 MAEA "Macrophage erythroblast 0.706 0.626 0.411 2.3e-58
UNIPROTKB|E7ENL1317 MAEA "Macrophage erythroblast 0.877 0.971 0.395 6.6e-58
UNIPROTKB|B4DVN3395 MAEA "cDNA FLJ54556, highly si 0.706 0.627 0.411 2.3e-56
UNIPROTKB|B4DQT1348 MAEA "Macrophage erythroblast 0.706 0.712 0.411 1.6e-53
UNIPROTKB|Q5F398396 MAEA "Macrophage erythroblast 0.706 0.626 0.423 2.4e-51
TAIR|locus:2097248 AT3G55070 "AT3G55070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 201/246 (81%), Positives = 223/246 (90%)

Query:   109 DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR-- 166
             DLVDI++F+EAKKVIDAL+N+EVA AL WC+DNK+RLKKSKSKFEFQLRLQEFIELVR  
Sbjct:   173 DLVDIDIFREAKKVIDALKNREVASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVD 232

Query:   167 -GENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQ 225
               E+  +AI YARK+LA WG THMKELQ V+ATLAFKS TEC+ YK LFE +QWD LVDQ
Sbjct:   233 TAESYKKAIQYARKHLASWGTTHMKELQHVLATLAFKSTTECSKYKVLFELRQWDVLVDQ 292

Query:   226 FKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQESFRKLASPLPYSK 285
             FKQEFCKLYGMT+EPLLNIYLQAGLSAL TPY  E+ CTKEDPLSQE+FRKLA PLP+SK
Sbjct:   293 FKQEFCKLYGMTMEPLLNIYLQAGLSALKTPYGLEEGCTKEDPLSQENFRKLALPLPFSK 352

Query:   286 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 345
             QHHSKLVCYI+KELMDTENPPQVLPNGYVYSTKAL+EMA+KN GKITCPRTGLVCNY++L
Sbjct:   353 QHHSKLVCYISKELMDTENPPQVLPNGYVYSTKALKEMAEKNGGKITCPRTGLVCNYTEL 412

Query:   346 VKAYIS 351
             VKAYIS
Sbjct:   413 VKAYIS 418
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0284463 maea "CT11-RanBPM domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-294 maea "macrophage erythroblast attacher" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1891748 Maea "macrophage erythroblast attacher" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309877 Maea "macrophage erythroblast attacher" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L5Y9 MAEA "Macrophage erythroblast attacher" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7ENL1 MAEA "Macrophage erythroblast attacher" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DVN3 MAEA "cDNA FLJ54556, highly similar to Homo sapiens macrophage erythroblast attacher (MAEA), transcript variant 1, mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DQT1 MAEA "Macrophage erythroblast attacher" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F398 MAEA "Macrophage erythroblast attacher" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2R9P6FYV10_ASPNCNo assigned EC number0.32790.93730.8103yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
pfam10607144 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif 1e-56
smart0075799 smart00757, CRA, CT11-RanBPM 3e-22
pfam1344555 pfam13445, zf-RING_LisH, RING-type zinc-finger, Li 5e-18
COG5109396 COG5109, COG5109, Uncharacterized conserved protei 8e-14
smart0066858 smart00668, CTLH, C-terminal to LisH motif 8e-12
smart0050463 smart00504, Ubox, Modified RING finger domain 0.002
>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain Back     alignment and domain information 
 Score =  180 bits (460), Expect = 1e-56
 Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 1/144 (0%)

Query: 115 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAI 174
           VF+E  K+ ++L N ++  AL WC++NK  L K  S  EF+LRLQ+FIEL+R    L A+
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 175 TYARKYLA-PWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKL 233
            YAR+ LA  +   H+KE+Q++M  LAF   T+ + YK+L  P +W+ L ++F +   KL
Sbjct: 61  EYARENLAPFFNEQHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAILKL 120

Query: 234 YGMTLEPLLNIYLQAGLSALNTPY 257
            G++ E  L I L+AGLSAL T  
Sbjct: 121 LGLSSESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144
>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM Back     alignment and domain information
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif Back     alignment and domain information
>gnl|CDD|227440 COG5109, COG5109, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif Back     alignment and domain information
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 351
KOG0396389 consensus Uncharacterized conserved protein [Funct 100.0
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
COG5109396 Uncharacterized conserved protein, contains RING Z 100.0
PF10607145 CLTH: CTLH/CRA C-terminal to LisH motif domain; In 100.0
KOG2659228 consensus LisH motif-containing protein [Cytoskele 99.74
smart0075799 CRA CT11-RanBPM. protein-protein interaction domai 99.73
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 99.49
smart0066858 CTLH C-terminal to LisH motif. Alpha-helical motif 99.28
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.03
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 98.76
PF04641260 Rtf2: Rtf2 RING-finger 98.55
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.25
KOG3113 293 consensus Uncharacterized conserved protein [Funct 98.17
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 97.93
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.88
PF1463444 zf-RING_5: zinc-RING finger domain 97.79
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.62
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.53
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.15
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.11
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.11
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.07
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.0
cd0016245 RING RING-finger (Really Interesting New Gene) dom 96.97
KOG3039303 consensus Uncharacterized conserved protein [Funct 96.91
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 96.62
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 96.53
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 96.16
PHA02929238 N1R/p28-like protein; Provisional 95.84
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.73
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 95.52
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 94.71
PHA02926242 zinc finger-like protein; Provisional 94.61
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 94.53
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 93.85
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 93.77
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 93.39
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 93.1
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 93.07
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 92.5
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 91.01
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 90.47
KOG2979262 consensus Protein involved in DNA repair [General 90.04
KOG1477469 consensus SPRY domain-containing proteins [General 90.0
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 89.15
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 88.49
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 88.41
smart00531147 TFIIE Transcription initiation factor IIE. 87.29
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 86.83
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 85.87
PF07304157 SRA1: Steroid receptor RNA activator (SRA1); Inter 85.37
PF04641 260 Rtf2: Rtf2 RING-finger 84.52
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 83.63
PF04710416 Pellino: Pellino; InterPro: IPR006800 Pellino is i 82.15
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 81.48
COG439162 Uncharacterized protein conserved in bacteria [Fun 80.55
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-81  Score=592.53  Aligned_cols=312  Identities=44%  Similarity=0.777  Sum_probs=299.3

Q ss_pred             cchhhcccccccccHHHHhHHHHhhhhHHHHHHHHHHHHHHHhhcc----CCCChHHHHHHHHHHHHHHHhhhhc-----
Q 018698           38 TEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS----ENFSKDDAVNHLTSLVSRLQGLKRK-----  108 (351)
Q Consensus        38 ~~~~~le~~~l~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~~~k~----~~~~~~~~~~~l~~~i~rl~~lkrk-----  108 (351)
                      ++++.|||++||||||.|+|+||+.||.|+||+++|...++++.+.    ...+.+++++.||.+|.|++.+||+     
T Consensus         2 ~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~e~~i   81 (389)
T KOG0396|consen    2 TFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKLEEYI   81 (389)
T ss_pred             cchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999872    2467999999999999999999988     


Q ss_pred             ----------------------------------------------------------------CCCCHHHHHHHHHHHH
Q 018698          109 ----------------------------------------------------------------DLVDIEVFQEAKKVID  124 (351)
Q Consensus       109 ----------------------------------------------------------------~lvd~d~f~~~~~I~~  124 (351)
                                                                                      ||||+|+|.+++.|.+
T Consensus        82 q~e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~  161 (389)
T KOG0396|consen   82 QSEEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRD  161 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Confidence                                                                            9999999999999999


Q ss_pred             HHhcCChHHHHHHHHhhhhHhhhCCCcchhhchhHHHHHHHhcCChHHHHHHHHHhCccchhhhHHHHHHHHHHhccCCC
Q 018698          125 ALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN  204 (351)
Q Consensus       125 ~L~~~dl~~AL~W~~enk~~L~k~~S~LEF~Lr~q~fIeLir~~~~~eAI~yark~l~~~~~~~~~ei~~~m~lLaf~~~  204 (351)
                      +|.+|+++|||.||++|+.+|+|.+|.|||+||+|+|||||+.+++.+||+|||+||.||..+|+++++.+||+|||++.
T Consensus       162 sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~  241 (389)
T KOG0396|consen  162 SLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY  241 (389)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhhcCcCCHHHHHHHHHHHHHHHcCCCCCchHHHHHhhhhccccccccccCCC---CCCCCCCchhhhcccCCC
Q 018698          205 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDC---TKEDPLSQESFRKLASPL  281 (351)
Q Consensus       205 ~~~spY~~L~~~~rW~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~c~~~~~---~~~cP~c~~~~~~l~~~L  281 (351)
                      +.+++|..|++++||+.|+++|.++++++||+|.+|+|.+.+++|+|++|||.|+.+..   .+.||+|++.|++++.+|
T Consensus       242 t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~CpvC~~~f~~ia~~L  321 (389)
T KOG0396|consen  242 TSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTPRCLNDESDNNPNNCPVCCEAFKPIAQAL  321 (389)
T ss_pred             cCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccccccccccCCCCCCCCCcccccchhhhcC
Confidence            99999999999999999999999999999999999999999999999999999997753   356999999999999999


Q ss_pred             CCCCCCCCeeeeeccccccCCCCCceeccCCccchHHHHHHHHHhCCCceecCCCCcccCcCCceeeecC
Q 018698          282 PYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS  351 (351)
Q Consensus       282 P~~~~~hS~~vCpis~e~~~e~NpP~~Lp~GhV~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi~  351 (351)
                      ||+||.||+++|.|||+.||++|||+++|||||||.++|.+|...+ | +.||+++++|.++++.|||++
T Consensus       322 Pfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~-~-i~dP~~~k~f~~~~l~kvy~~  389 (389)
T KOG0396|consen  322 PFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD-G-IGDPRTKKVFRYSELCKVYLS  389 (389)
T ss_pred             CchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccC-C-CcCCCCCccccHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999996433 3 999999999999999999985

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 Back     alignment and domain information
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton] Back     alignment and domain information
>smart00757 CRA CT11-RanBPM Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00668 CTLH C-terminal to LisH motif Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>smart00531 TFIIE Transcription initiation factor IIE Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 90/322 (27%)

Query: 44  EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSEN--FSKDDAVNHLTSLVSR 101
           EHQ+       YK  +     A          +  DV D      SK++ ++H+      
Sbjct: 13  EHQY------QYKDILSVFEDAFVDNF-----DCKDVQDMPKSILSKEE-IDHIIMSKDA 60

Query: 102 LQGLKRKDLVDI---------EVFQEA------KKVIDALQNKEVAPALAWC--SDNKSR 144
           + G  R  L            + F E       K ++  ++ ++  P++      + + R
Sbjct: 61  VSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 145 LKKSKSKFE--FQLRLQEFIELVRGENNLRAITYARKYLAPWGATHM----KELQRVMAT 198
           L      F      RLQ +++L +    LR      K +   G   +    K     +A 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA----KNVLIDG---VLGSGKT---WVAL 168

Query: 199 LAFKSN-TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPY 257
               S   +C     +F    W   ++  K   C      LE L  +  Q     ++  +
Sbjct: 169 DVCLSYKVQCKMDFKIF----W---LN-LKN--CNSPETVLEMLQKLLYQ-----IDPNW 213

Query: 258 CYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYST 317
               D +    L   S +     L  SK + + L+               VL N  V + 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---------------VLLN--VQNA 256

Query: 318 KALEEMAKKNNGKITCPRTGLV 339
           KA           ++C +  L+
Sbjct: 257 KAWNAF------NLSC-KI-LL 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 98.95
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.78
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.72
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.7
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.68
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.64
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.56
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.49
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.38
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.36
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.32
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.3
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.24
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.21
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.2
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.16
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.15
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.12
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.11
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.11
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.09
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.02
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 97.93
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 97.92
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 97.91
2ecm_A55 Ring finger and CHY zinc finger domain- containing 97.86
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 97.86
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 97.81
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 97.79
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 97.78
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 97.76
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 97.76
1z6u_A150 NP95-like ring finger protein isoform B; structura 97.75
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 97.73
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 97.7
2ect_A78 Ring finger protein 126; metal binding protein, st 97.7
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 97.67
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 97.62
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 97.56
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.55
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 97.55
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 97.52
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 97.48
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 97.44
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 97.44
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 97.39
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.39
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 97.37
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 97.37
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 97.33
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 97.26
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 97.17
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 97.1
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.06
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.05
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 97.01
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 96.99
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 96.92
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 96.82
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 96.67
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 96.62
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.37
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 96.35
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 95.96
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 95.95
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 95.77
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 95.1
2ea5_A68 Cell growth regulator with ring finger domain prot 94.7
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 93.48
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 92.36
2k5c_A95 Uncharacterized protein PF0385; structural genomic 91.66
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 89.35
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 88.45
4ayb_P48 DNA-directed RNA polymerase; transferase, multi-su 87.19
2nxp_A156 Transcription initiation factor TFIID subunit 5; t 81.17
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
Probab=98.95  E-value=3.5e-10  Score=82.92  Aligned_cols=55  Identities=18%  Similarity=0.334  Sum_probs=48.8

Q ss_pred             eeeeeccccccCCCCCceec-cCCccchHHHHHHHHHhCCCceecCCCCcccCcCCceeeec
Q 018698          290 KLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI  350 (351)
Q Consensus       290 ~~vCpis~e~~~e~NpP~~L-p~GhV~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi  350 (351)
                      .|+||||+++|.+   ||++ ++||||.+++|.+|.+++ +  +||+|++..+.+++.++++
T Consensus         3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~-~--~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDT-G--NDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHH-S--BCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhC-C--CCcCCcCCCChhhcEECcc
Confidence            4899999999995   8999 999999999999998754 3  4999999999999998875
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X Back     alignment and structure
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.88
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.61
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.56
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.51
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.38
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.13
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.93
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 97.89
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.67
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.61
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.47
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.46
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.21
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.98
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 96.78
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 95.78
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 94.59
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.4e-10  Score=79.16  Aligned_cols=53  Identities=19%  Similarity=0.341  Sum_probs=47.0

Q ss_pred             eeeeccccccCCCCCceecc-CCccchHHHHHHHHHhCCCceecCCCCcccCcCCceeee
Q 018698          291 LVCYITKELMDTENPPQVLP-NGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY  349 (351)
Q Consensus       291 ~vCpis~e~~~e~NpP~~Lp-~GhV~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy  349 (351)
                      ++|||+++.|.+   ||++| |||+|.+++|.++.+++   -+||.|++..+.+|+.++.
T Consensus         1 l~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~---~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           1 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHH---SBCTTTCCBCCGGGCEECC
T ss_pred             CCCccCCchHHh---cCccCCCCCcccHHHHHHHHhhc---cCCCccCCcCCHHhceeCC
Confidence            589999999976   88875 99999999999998764   3799999999999998874
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure