Citrus Sinensis ID: 018714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
msrpqdphrpffpfgnpfrmmspkgsrlspKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITelelpvsdwdekWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHtldsssptqfgracssldnwrehissknprvesCRSILDNLVAsldlpkvknsaKGKVLMRAMYGVKVLTVFVCSIFAAAFSGsaknllelnvsdtlpwapafSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNlratgtapdilvgrnaepvrr
Flexible Loop (DISEMBL)
msrpqdphrpffpfgnpfrmMSPKGSRLSPKLVSLLADFEETLAErlrklmpkdkdDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHIssknprvesCRSILDNLvasldlpkvknsaKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCnlratgtapdilvgrnaepvrr
Low Complexity Region (SEG)
MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRR
Disordered region (IsUnstruct)
*******************************LVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHT********************************CRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILV*********
Disordered Region (DISOPRED)
*************************************DFEETLAERLR*********ILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLH***************SLDNWREH*********************************KVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQAN***************VLNELEAVDGSVKKLYEVIQNEVDTV*EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLC**********************
Disordered Region (DISEMBL)
MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRR
Disordered Region (DISPRO)
*********PFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRA******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q9LMM6	349	Protein BPS1, chloroplast	no	no	0.962	0.968	0.588	1e-114
A2Z9A6	456	UPF0496 protein 4 OS=Oryz	N/A	no	0.843	0.649	0.483	9e-76
Q337C0	456	UPF0496 protein 4 OS=Oryz	yes	no	0.843	0.649	0.483	2e-75

>sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/352 (58%), Positives = 264/352 (75%), Gaps = 14/352 (3%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL 
Sbjct: 1   MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILT 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+
Sbjct: 61  VSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+L
Sbjct: 121 LNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVKNSAKGKVLMRA+YGVKV T+++  +FAAAFSGS++NL+ L VS+ LPWA +F  +Q
Sbjct: 181 PKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSFMEVQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRA 299
             +NAE++NI  S   TVL ELEAV   VKKLY  IQ   +D +  + L+ SV +     
Sbjct: 241 NTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTE----- 295

Query: 300 DNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATG------TAPDILVGRN 345
             LS G+D ++K VD FFKI+LSGRD LL NLR+ G      T+P    G+N
Sbjct: 296 --LSNGIDLVSKEVDCFFKILLSGRDTLLENLRSMGASTLQATSPKKAAGKN 345

Required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development.
Arabidopsis thaliana (taxid: 3702)

>sp|A2Z9A6|U496D_ORYSI UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2

 Score =  283 bits (725), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 151/312 (48%), Positives = 195/312 (62%), Gaps = 16/312 (5%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L 
Sbjct: 1   MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L++
Sbjct: 61  LSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPT----QFGRACSSLDNWREHISSKNPRVESCRSILDNLVA 176
           + QG LLLQ  LH L S S      Q  RA  SL  W E +  + PR+ SC + L  L  
Sbjct: 121 LDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAG 180

Query: 177 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAF 236
           +L L KVKNS KGKVLMRA+YG++ +TVFVCSIF A  SGS K L+EL+V +   W+ AF
Sbjct: 181 NLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240

Query: 237 SALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEV------------IQNEVDTVE 284
           + L   V+ E+   L+ G    + ELE V+   K+L+ +            + N V   E
Sbjct: 241 NDLHTAVSEELTRQLAGGSVAAVKELEEVEACAKRLHVLASTSQLEEEAANLANAVSHTE 300

Query: 285 EELLQKSVLDLG 296
           EE++  S++  G
Sbjct: 301 EEVMSDSIVQEG 312

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q337C0|U496D_ORYSJ UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1

 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/312 (48%), Positives = 194/312 (62%), Gaps = 16/312 (5%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L 
Sbjct: 1   MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L++
Sbjct: 61  LSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPT----QFGRACSSLDNWREHISSKNPRVESCRSILDNLVA 176
           + QG LLLQ  LH L S S      Q  RA  SL  W E +  +  R+ SC + L  L  
Sbjct: 121 LDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAG 180

Query: 177 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAF 236
           +L L KVKNSAKGKVLMRA+YG++ +TVFVCSIF A  SGS K L+EL+V +   W+ AF
Sbjct: 181 NLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240

Query: 237 SALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEV------------IQNEVDTVE 284
           + L   V+ E+   LS G    + ELE V+   ++L+ +            + N V   E
Sbjct: 241 NDLHTAVSEELTRQLSGGSVAAVKELEEVEACARRLHVLASTSQLEEEAANLANAVSHTE 300

Query: 285 EELLQKSVLDLG 296
           EE++  S+   G
Sbjct: 301 EEVMSDSIAQEG 312

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
255541682	381	conserved hypothetical protein [Ricinus	0.982	0.905	0.704	1e-138
118484756	354	unknown [Populus trichocarpa]	0.994	0.985	0.661	1e-133
224067922	351	predicted protein [Populus trichocarpa]	1.0	1.0	0.655	1e-132
224130366	338	predicted protein [Populus trichocarpa]	0.957	0.994	0.675	1e-131
359489660	350	PREDICTED: protein BPS1, chloroplastic-l	0.965	0.968	0.666	1e-129
388522363	352	unknown [Medicago truncatula]	0.988	0.985	0.642	1e-129
357507523	431	Protein BPS1 [Medicago truncatula] gi|35	0.988	0.805	0.645	1e-129
356568427	350	PREDICTED: protein BPS1, chloroplastic-l	0.977	0.98	0.655	1e-128
255640732	350	unknown [Glycine max]	0.977	0.98	0.652	1e-126
359807193	354	uncharacterized protein LOC100786039 [Gl	0.982	0.974	0.651	1e-125

>gi|255541682|ref|XP_002511905.1| conserved hypothetical protein [Ricinus communis] gi|223549085|gb|EEF50574.1| conserved hypothetical protein [Ricinus communis]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/345 (70%), Positives = 286/345 (82%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MS PQ+PHRPFF FGNPFRMMSPKGS+L+P+L+SLL  FEETL ERL+KL+PKDKDD+L+
Sbjct: 1   MSTPQEPHRPFFSFGNPFRMMSPKGSQLTPRLLSLLNAFEETLVERLKKLIPKDKDDVLS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           L+WM+ AMESLCETH  IK LIT+LELPV++WDEKWIDVYLDISV LLDICIAFSS L++
Sbjct: 61  LTWMKSAMESLCETHTDIKTLITDLELPVANWDEKWIDVYLDISVKLLDICIAFSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QGHLLLQCVLH L+S++  QF RA +SLD+WR+HISSKN RVE+CRSIL+NL  SL+L
Sbjct: 121 LNQGHLLLQCVLHNLESNTSKQFVRASASLDSWRQHISSKNQRVENCRSILENLRGSLNL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVKNSAKGKVLMRAMYGVKV TVF+CS+FAAAFS S+KNLL L+VSDT+ WA AFS LQ
Sbjct: 181 PKVKNSAKGKVLMRAMYGVKVQTVFLCSVFAAAFSNSSKNLLVLDVSDTIKWAQAFSDLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
            N+N E+R     G+ TVL EL+AVD  VKKLY +IQ+ V  VE E  + SV DL K ++
Sbjct: 241 TNLNVEIREKFCHGKFTVLKELDAVDSIVKKLYPMIQDGVGPVEVEAFENSVSDLRKGSE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRN 345
            LSQGLD L K VDGFFKIVLSGRDALLC LR +G   D  +G N
Sbjct: 301 KLSQGLDLLAKQVDGFFKIVLSGRDALLCKLRESGAVNDTTLGTN 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484756|gb|ABK94247.1| unknown [Populus trichocarpa]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/349 (66%), Positives = 279/349 (79%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MS+PQ PHRPFFPFGNPFRM+SPKGS+LSP+L+SLL  FEE LA RLRKL PKDK D+L+
Sbjct: 1   MSQPQQPHRPFFPFGNPFRMLSPKGSQLSPRLLSLLNTFEEALAARLRKLNPKDKGDVLS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
            +WM+LAMESLCETH VIK LITELELPV++WDEKWIDVYLDI+V LLDICIAFSS L+ 
Sbjct: 61  FTWMKLAMESLCETHTVIKTLITELELPVTEWDEKWIDVYLDITVKLLDICIAFSSELSW 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QG L LQC LH L+S++  +  +ACSSLD+WR+HI SKNPR+E+C+SIL+NLV SL L
Sbjct: 121 LNQGQLFLQCALHKLESNNSEKLMQACSSLDSWRQHIGSKNPRLENCKSILENLVDSLTL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVKNSAKGKVLMRAMYGVKV TVFVCS+FAAAFS ++KNL++L+V +T+ WA A+S LQ
Sbjct: 181 PKVKNSAKGKVLMRAMYGVKVQTVFVCSVFAAAFSVNSKNLIDLDVPNTILWAQAYSDLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             VN E+R + S G+ T L EL+ V+  V  LY +IQ+ +   E E    S  DLG+RA+
Sbjct: 241 TTVNGEIREVFSRGKFTFLKELDEVETVVNNLYPMIQDGMGPTEVEAFSSSFSDLGRRAE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPV 349
            LSQ LD L K VDGFFKIVLSGRDALLCNLR + T  D   G N+E +
Sbjct: 301 RLSQVLDFLAKEVDGFFKIVLSGRDALLCNLRVSDTVADPFRGSNSEGI 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067922|ref|XP_002302600.1| predicted protein [Populus trichocarpa] gi|222844326|gb|EEE81873.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/351 (65%), Positives = 277/351 (78%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSRPQ+PHRPFFPFGNPFRM+S KGS+LSP+L+SLL  FE+ LA RLRKL PKDK D+L+
Sbjct: 1   MSRPQEPHRPFFPFGNPFRMLSSKGSQLSPRLLSLLNAFEDALAARLRKLNPKDKYDVLS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           L+WM+LAMESLCETH  IK L TEL+LPV+DWDEKWIDVYLDISV LLDIC+AFSS L +
Sbjct: 61  LAWMKLAMESLCETHTDIKTLTTELDLPVTDWDEKWIDVYLDISVKLLDICVAFSSELLR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QGHL+L C LH L+S++  +  RA SS+D+WR+HI SKNPR+E+C+SILD LV SL L
Sbjct: 121 LNQGHLMLHCALHNLESNTSEKLVRARSSIDSWRQHIGSKNPRLENCKSILDGLVDSLSL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVKNSAKGKVLM+AMYGVK+ TVFVCS+ A  FSG++KNLL+L+V++T  W  AFS LQ
Sbjct: 181 PKVKNSAKGKVLMQAMYGVKIHTVFVCSVLATVFSGNSKNLLDLDVANTTMWVQAFSDLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
            NVN  +R+I S  + T L EL+ VD +VK LY +IQ+    +E E    S  DLG+RA+
Sbjct: 241 TNVNGGIRDIFSQRKFTALKELDEVDTAVKNLYPMIQDGTRPIEAEAFSNSFSDLGRRAE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRR 351
            LSQGLD LTK VDGFFKIVLSGRDALLCNLR + T  D   G N E   R
Sbjct: 301 KLSQGLDFLTKVVDGFFKIVLSGRDALLCNLRVSDTVADPFPGSNGEQFVR 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130366|ref|XP_002320819.1| predicted protein [Populus trichocarpa] gi|222861592|gb|EEE99134.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/336 (67%), Positives = 273/336 (81%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MS+PQ PHRPFFPFGNPFRM+SPKGS+LSP+L+SLL  FEE LA RLRKL PKDK D+L+
Sbjct: 1   MSQPQQPHRPFFPFGNPFRMLSPKGSQLSPRLLSLLNTFEEALAARLRKLNPKDKGDVLS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
            +WM+LAMESLCETH VIK LITELELPV++WDEKWIDVYLDI+V LLDICIAFSS L+ 
Sbjct: 61  FTWMKLAMESLCETHTVIKTLITELELPVTEWDEKWIDVYLDITVKLLDICIAFSSELSW 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QG L LQC LH L+S++  +  +ACSSLD+WR+HI SKNPR+E+C+SIL+NLV SL L
Sbjct: 121 LNQGQLFLQCALHKLESNNSEKLMQACSSLDSWRQHIGSKNPRLENCKSILENLVDSLTL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVKNSAKGKVLMRAMYGVKV TVFVCS+FAAAFS ++KNL++L+V +T+ WA A+S LQ
Sbjct: 181 PKVKNSAKGKVLMRAMYGVKVQTVFVCSVFAAAFSVNSKNLIDLDVPNTILWAQAYSDLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             VN E+R + S G+ T L EL+ V+  V  LY +IQ+ +   E E    S  DLG+RA+
Sbjct: 241 TTVNGEIREVFSRGKFTFLKELDEVETVVNNLYPMIQDGMGPTEVEAFSSSFSDLGRRAE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGT 336
            LSQ LD L K VDGFFKIVLSGRDALLCNLR + T
Sbjct: 301 RLSQVLDFLAKEVDGFFKIVLSGRDALLCNLRVSDT 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489660|ref|XP_003633960.1| PREDICTED: protein BPS1, chloroplastic-like [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/339 (66%), Positives = 275/339 (81%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSRPQ+PHRP FPFGNPFRM+ PKGS LSP+L+SLL DFE TLAERLRKL PK  +D+L+
Sbjct: 1   MSRPQEPHRPSFPFGNPFRMILPKGSYLSPRLLSLLNDFENTLAERLRKLKPKGTEDVLS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
            SWM+LAME LCE H  IK LIT+LELPV DWD+KWIDVYLD SV LLDICIA SS L++
Sbjct: 61  CSWMKLAMELLCEIHKDIKILITDLELPVCDWDDKWIDVYLDNSVKLLDICIALSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QGHLLLQCVL  LD++SP Q  RA SSLD+WR+HI SKNP++++C +ILD+L  S++L
Sbjct: 121 LNQGHLLLQCVLRNLDTASPKQLVRARSSLDSWRQHIGSKNPKLQNCLTILDSLAESINL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PK+KNSAKGKVLMRAMYGV+V TVFVCS+FAAAF+GSA  L++L+V+DT  W+ AF+ LQ
Sbjct: 181 PKIKNSAKGKVLMRAMYGVRVGTVFVCSVFAAAFTGSANKLIDLHVADTFLWSEAFTDLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
           + VN E+RN  SSGR TVL ELEAVD S+ KLY ++Q+ V   E+   Q SV DLGK  +
Sbjct: 241 SYVNVEIRNTFSSGRVTVLKELEAVDTSINKLYPMVQDGVGPAEDGTFQNSVSDLGKSVE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPD 339
            LS+GLD LTK VDGFF++VL+GRDALLCNLR +    D
Sbjct: 301 KLSEGLDLLTKDVDGFFQMVLTGRDALLCNLRVSPMHED 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522363|gb|AFK49243.1| unknown [Medicago truncatula]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/347 (64%), Positives = 275/347 (79%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSRPQDP R FFPFGNPFRM++PKG++L P+L+++L+DFE TL ERL+ L+PK +D++++
Sbjct: 1   MSRPQDPPRSFFPFGNPFRMIAPKGTKLPPQLLAVLSDFEATLEERLKNLIPKSEDEVVS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           LSWM  AM++LCE+HN IK L+T LELPV+DWDEKWIDVYLDISV LLDICIAFSS L++
Sbjct: 61  LSWMTSAMQALCESHNDIKSLMTNLELPVTDWDEKWIDVYLDISVKLLDICIAFSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QG LLLQC LH   S S  Q  +A SSLD WR+HI SKNPR+E+C S+LDNL  S DL
Sbjct: 121 LNQGRLLLQCTLHHFGSFSSDQLFQAYSSLDGWRQHIGSKNPRIENCGSVLDNLAGSSDL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVK SAKGKVLM+A+YGVK LTVFVC +FA AFSGS KNL++++V+D   WAP F  LQ
Sbjct: 181 PKVKKSAKGKVLMQAIYGVKALTVFVCGVFATAFSGSTKNLMDMDVADVYSWAPTFKGLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             VN E+R   SSGR TVLNELEAVD SV++LY +IQ  VDT+E E L K+V  LG+  +
Sbjct: 241 NLVNEEIRVRFSSGRFTVLNELEAVDLSVRELYPIIQGVVDTIETESLAKTVEKLGRATE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAE 347
           N SQGLD LTK VDGFF++VLSGRDALL NLR+  T  D ++  N +
Sbjct: 301 NFSQGLDLLTKEVDGFFQVVLSGRDALLSNLRSGATVNDHILRGNKD 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507523|ref|XP_003624050.1| Protein BPS1 [Medicago truncatula] gi|355499065|gb|AES80268.1| Protein BPS1 [Medicago truncatula]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/347 (64%), Positives = 275/347 (79%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSRPQDP R FFPFGNPFRM++PKG++L P+L+++L+DFE TL ERL+ L+PK KD++++
Sbjct: 1   MSRPQDPPRSFFPFGNPFRMIAPKGTKLPPQLLAVLSDFEATLEERLKNLIPKSKDEVVS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           LSWM  AM++LCE+HN IK L+T LELPV+DWDEKWIDVYLDISV LLDICIAFSS L++
Sbjct: 61  LSWMTSAMQALCESHNDIKSLMTNLELPVTDWDEKWIDVYLDISVKLLDICIAFSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QG LLLQC LH   S S  Q  +A SSLD WR+HI SKNPR+E+C S+LDNL  S DL
Sbjct: 121 LNQGRLLLQCTLHHFGSFSSDQLFQAYSSLDGWRQHIGSKNPRIENCGSVLDNLAGSSDL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVK SAKGKVLM+A+YGVK LTVFVC +FA AFSGS KNL++++V+D   WAP F  LQ
Sbjct: 181 PKVKKSAKGKVLMQAIYGVKALTVFVCGVFATAFSGSTKNLMDMDVADVYSWAPTFKGLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             VN E+R   SSGR TVLNELEAVD SV++LY +IQ  VDT+E E L K+V  LG+  +
Sbjct: 241 NLVNEEIRVRFSSGRFTVLNELEAVDLSVRELYPIIQGVVDTIETESLAKTVEKLGRATE 300

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAE 347
           N SQGLD LTK VDGFF++VLSGRDALL NLR+  T  D ++  N +
Sbjct: 301 NFSQGLDLLTKEVDGFFQVVLSGRDALLSNLRSGATVNDHILRGNKD 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568427|ref|XP_003552412.1| PREDICTED: protein BPS1, chloroplastic-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/345 (65%), Positives = 272/345 (78%), Gaps = 2/345 (0%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSR QD +R FFPFGNPFRM+SPKG ++S +L+ +L  FE TL ERL+KL+PK KD+IL+
Sbjct: 1   MSRAQDANRSFFPFGNPFRMISPKGPKISSQLLLILHAFEATLEERLKKLIPKSKDEILS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           LSWM LAM++LCE+HN IK LITELELPV DWDEKWIDVYLDISV LLDICIAFSS L++
Sbjct: 61  LSWMTLAMQALCESHNDIKTLITELELPVHDWDEKWIDVYLDISVKLLDICIAFSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QGHLLL C LH L SSS  Q+ RACSSLD W++HI S NPR+E C SILDNL+ SLDL
Sbjct: 121 LNQGHLLLHCALHNLGSSSSEQYVRACSSLDGWKQHIGSGNPRIEKCGSILDNLLRSLDL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVK SAKGKVLM+AMYGVKV TVF+CS+FAAAFSGS KN+ +L+V+D   WAP F +LQ
Sbjct: 181 PKVKKSAKGKVLMQAMYGVKVQTVFLCSVFAAAFSGSTKNMSDLDVADVYSWAPTFKSLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             VN E+R  + SGR T+LNELE VD SVK+LY +IQ   D +E E L K V +LG+  +
Sbjct: 241 DLVNGEIR--VRSGRFTILNELEVVDSSVKELYPIIQGVSDAIETESLAKIVGELGRATE 298

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRN 345
            LSQGLD LTK VD FF++VL+GRDALL +LR+  T  D +   N
Sbjct: 299 KLSQGLDLLTKEVDSFFQVVLTGRDALLSSLRSGATFIDSIQAGN 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640732|gb|ACU20650.1| unknown [Glycine max]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/345 (65%), Positives = 270/345 (78%), Gaps = 2/345 (0%)

Query: 1   MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
           MSR QD +R FFPFGNPFRM+SPKG ++S +L+ +L  FE TL ERL+KL+PK KD+IL+
Sbjct: 1   MSRAQDANRSFFPFGNPFRMISPKGPKISSQLLLILHAFEATLEERLKKLIPKSKDEILS 60

Query: 61  LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
           LSWM LAM++LCE+HN IK LITELELPV DWDEKWIDVYLDISV LLDICIAFSS L++
Sbjct: 61  LSWMTLAMQALCESHNDIKTLITELELPVHDWDEKWIDVYLDISVKLLDICIAFSSELSR 120

Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
           ++QGHLLL C LH L SSS  Q+ RACSSLD W++HI S NPR+E C SILDNL+ SLDL
Sbjct: 121 LNQGHLLLHCALHNLGSSSSEQYVRACSSLDGWKQHIGSGNPRIEKCGSILDNLLRSLDL 180

Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
           PKVK SAKGKVLM+AMYGVKV TVF+CS+FAAAFSGS KN+ +L+V+D   WAP F +LQ
Sbjct: 181 PKVKKSAKGKVLMQAMYGVKVQTVFLCSVFAAAFSGSTKNMSDLDVADVYSWAPTFKSLQ 240

Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             VN E+R  + SGR T+LNELE VD SVK+LY  IQ   D +E E L K V +LG+  +
Sbjct: 241 DLVNGEIR--VRSGRFTILNELEVVDSSVKELYPFIQGVSDAIETESLAKIVGELGRATE 298

Query: 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRN 345
            LSQGLD LTK VD F ++VL+GRDALL +LR+  T  D +   N
Sbjct: 299 KLSQGLDLLTKEVDSFSQVVLTGRDALLSSLRSGATFIDSIQAGN 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807193|ref|NP_001240854.1| uncharacterized protein LOC100786039 [Glycine max] gi|255634751|gb|ACU17737.1| unknown [Glycine max]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/347 (65%), Positives = 271/347 (78%), Gaps = 2/347 (0%)

Query: 1   MSRPQDPH--RPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDI 58
           MSR QDPH  R FFPFGNPFRM+SPKGSR+SP+L+++L  FE TLAERL+ LMPK KD+I
Sbjct: 1   MSRSQDPHPSRSFFPFGNPFRMISPKGSRMSPQLLAVLQAFEATLAERLKNLMPKSKDEI 60

Query: 59  LNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVL 118
           L LSWM LAM+SLCE+HN I+ L+T LELPVSDW++KWIDVYLDIS  LLDIC AFSS L
Sbjct: 61  LTLSWMTLAMKSLCESHNDIRTLMTALELPVSDWEDKWIDVYLDISSKLLDICNAFSSEL 120

Query: 119 TKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASL 178
           ++++QG+L L+C LH LDS+S  Q+ RACS LD+WR+H+SS+NPR+E C S+LDNLV SL
Sbjct: 121 SRLNQGNLPLKCALHNLDSASSKQYLRACSLLDDWRQHVSSRNPRIEKCSSMLDNLVGSL 180

Query: 179 DLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSA 238
           DLPKVKNSAKGKVLM+AMYGVKV TVF+C +F AAFSGS+K L +LNV+D   WAP F  
Sbjct: 181 DLPKVKNSAKGKVLMQAMYGVKVETVFICRVFTAAFSGSSKKLSDLNVADIHSWAPDFRR 240

Query: 239 LQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKR 298
           LQ  VN E+R   S G+ TVLNELEAVD SVK LY  IQ  VDTVE E L K+V +L   
Sbjct: 241 LQDLVNEEIRVRFSGGKFTVLNELEAVDASVKILYPTIQAGVDTVETEWLVKTVEELRAG 300

Query: 299 ADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRN 345
           A+ LSQG+D L K VDGFF+ V++ RD LL ++R   T  D   GRN
Sbjct: 301 AEKLSQGIDLLAKGVDGFFQAVMTSRDTLLSSVRFDKTVNDRSPGRN 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2063015	347	BPS2 "BYPASS 2" [Arabidopsis t	0.988	1.0	0.622	5.8e-114
TAIR|locus:2025406	349	BPS1 "AT1G01550" [Arabidopsis	0.962	0.968	0.588	1.8e-103
TAIR|locus:2124923	348	BPS3 "AT4G01360" [Arabidopsis	0.857	0.864	0.422	5.1e-58
TAIR|locus:2082807	316	AT3G61500 "AT3G61500" [Arabido	0.433	0.481	0.420	2e-30
TAIR|locus:2019145	397	AT1G74450 "AT1G74450" [Arabido	0.390	0.345	0.191	1.7e-06
TAIR|locus:2034959	382	AT1G18740 "AT1G18740" [Arabido	0.356	0.327	0.226	5.7e-05
TAIR|locus:2030591	333	AT1G22030 "AT1G22030" [Arabido	0.247	0.261	0.266	0.00018

TAIR|locus:2063015 BPS2 "BYPASS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 216/347 (62%), Positives = 275/347 (79%)

Query:     1 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
             MSRPQDP R FFPFGNPFRM+S KGS LSP L+SLL  FE  L ERL+KLMPK+KDDIL 
Sbjct:     1 MSRPQDPPRGFFPFGNPFRMLSSKGSDLSPWLLSLLNGFELRLEERLKKLMPKNKDDILT 60

Query:    61 LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
             LSWM+LAMESLCETH  I  LIT+L+LPVSDW+EKW+DVYL+ISV LLD+C AFSS LT+
Sbjct:    61 LSWMKLAMESLCETHKNINTLITDLQLPVSDWEEKWVDVYLNISVRLLDLCNAFSSELTR 120

Query:   121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
             ++QG L L+CVLH L S S  ++ +A SSLD+WR+H+++ NPR+E+CR++LD+LV SL L
Sbjct:   121 LNQGDLFLKCVLHNLQSDSGEKYLQARSSLDSWRQHVNTNNPRIENCRAVLDSLVKSLSL 180

Query:   181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
             PKVKNS KGKVLMRA YGVKV TV++CS+F AA+S S K+L +L VS+   WA  F+ +Q
Sbjct:   181 PKVKNSPKGKVLMRAFYGVKVQTVYICSVFTAAWSDSTKDLFDLPVSEKPLWAKVFTDMQ 240

Query:   241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300
             + VNAE+R++LSSGR T+L ELE+VD SV+KLY +IQ+ VD VE E  + +V++LG +A+
Sbjct:   241 SVVNAEIRDMLSSGRTTILKELESVDASVEKLYPMIQDGVDPVEVEFFKDNVMELGTQAE 300

Query:   301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAE 347
              LSQGLD L + VD FFK+ L GRD LLCNLR++ +     VG + +
Sbjct:   301 KLSQGLDQLLEEVDSFFKLTLRGRDVLLCNLRSSDSISGNAVGEDVD 347

GO:0009507 "chloroplast" evidence=ISM

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2025406 BPS1 "AT1G01550" [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 207/352 (58%), Positives = 264/352 (75%)

Query:     1 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
             M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL 
Sbjct:     1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILT 60

Query:    61 LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
             +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+
Sbjct:    61 VSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTR 120

Query:   121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
             ++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+L
Sbjct:   121 LNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNL 180

Query:   181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
             PKVKNSAKGKVLMRA+YGVKV T+++  +FAAAFSGS++NL+ L VS+ LPWA +F  +Q
Sbjct:   181 PKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSFMEVQ 240

Query:   241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRA 299
               +NAE++NI  S   TVL ELEAV   VKKLY  IQ   +D +  + L+ SV +L    
Sbjct:   241 NTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTEL---- 296

Query:   300 DNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATG------TAPDILVGRN 345
                S G+D ++K VD FFKI+LSGRD LL NLR+ G      T+P    G+N
Sbjct:   297 ---SNGIDLVSKEVDCFFKILLSGRDTLLENLRSMGASTLQATSPKKAAGKN 345

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009790 "embryo development" evidence=IGI

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2124923 BPS3 "AT4G01360" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 139/329 (42%), Positives = 210/329 (63%)

Query:    16 NPFRMMSPK--GSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCE 73
             NPF+++  K   +RLSPKL+SLL +FE  L   +R+L+PKDK+DI+++SWM  AM+SLCE
Sbjct:    10 NPFKILFTKKNNARLSPKLLSLLNNFETNLTVSIRELVPKDKNDIVSVSWMIQAMQSLCE 69

Query:    74 THNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLH 133
             TH  I+ L+ +LE+PVSD +E +I ++ D S+   ++C AF+S +  +  G+LLL+    
Sbjct:    70 THKSIRTLVKDLEVPVSDLEENFIYIFSDFSLKR-ELCNAFTSEIYHLEHGNLLLKFAFS 128

Query:   134 TLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLD-------LPKVKNS 186
              L+++S    G     L  W +H+ SKNP +E+  ++L  LV S+D         K K S
Sbjct:   129 KLETNS----GNI---LQRWNQHMVSKNPSIENWGAVLSRLVESMDHHHHISKKGKKKYS 181

Query:   187 AKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVS---DTLPWAPAFSALQANV 243
             A+GKVL+R +YGVKV T+++ S+F A+FSGS+KNL  L +    + LPW  AF  LQ  +
Sbjct:   182 AEGKVLLRVLYGVKVKTLYIFSVFDASFSGSSKNLFYLTIPKEMEELPWVQAFMELQNTI 241

Query:   244 NAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRADNL 302
             N E++N   S   TV+ +LEAV+  VKKLY  +Q   V  +  E L+KSV++L +R + +
Sbjct:   242 NPEIKNTFLSDGFTVIKDLEAVETGVKKLYTAVQEGSVPILLVEPLEKSVIELSERFELV 301

Query:   303 SQGLDHLTKAVDGFFKIVLSGRDALLCNL 331
             S+     T+ +    K+V+S RDALL +L
Sbjct:   302 SKE----TRCLS---KMVISARDALLESL 323

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2082807 AT3G61500 "AT3G61500" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 66/157 (42%), Positives = 100/157 (63%)

Query:    28 LSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELEL 87
             L PK   LL +FE +L ERL+KL+P++ D+IL L WM LAME L +THN I  LIT+L+L
Sbjct:    22 LFPKKNLLLNNFESSLTERLKKLIPQNTDEILTLPWMILAMELLYDTHNDINILITDLKL 81

Query:    88 P-VSDWDEK-WIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGR 145
               ++D +   W + Y++I+  LLD+C AF S+L  ++ G + L+ + H L+  S      
Sbjct:    82 HYMTDSEHGYWFENYMNINTKLLDLCNAFMSLLRHMNHGIVCLKFLRHKLEMKSEDLCTE 141

Query:   146 ACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPK 182
              CS+LD+WRE+I+++   +  CR +L   V SL+  K
Sbjct:   142 ICSALDSWRENITAE---ISKCREVLGRYVESLNFHK 175

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019145 AT1G74450 "AT1G74450" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 27/141 (19%), Positives = 62/141 (43%)

Query:     9 RPFFPFGNPFRMMSPKGSRLSPKLVSL---LADFEETLAERLRKLMPKDKDDILNLSWMR 65
             R F        + S + + ++P+L  +   L  F+  +AER   L     +D+L+L W+ 
Sbjct:    12 RSFLNLRRDTAVNSVESTTVTPELTQMEAELVSFQRKVAERFIDLNASSCEDLLSLEWVG 71

Query:    66 LAMESLCETHNVIKDLITELELPVSDWD-EKWIDVYLDISVNLLDICIAFSSVLTKVSQG 124
               ++S        + ++      ++    ++ +  Y + SV  LD+C A    + ++ Q 
Sbjct:    72 KLLDSFLSCQEEFRSIVINHRSMITKPPMDRLVSDYFERSVKALDVCNAIRDGVEQIRQW 131

Query:   125 HLLLQCVLHTLDSSSPTQFGR 145
               L++ V+   +++     G+
Sbjct:   132 QKLIEIVICAFNNNGGGSSGK 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2034959 AT1G18740 "AT1G18740" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 29/128 (22%), Positives = 56/128 (43%)

Query:    20 MMSPKGSRLSPKLVSLLAD-FEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVI 78
             ++S   S   P  + +  D F+  +AE+   L     +D+L+L W+   ++S        
Sbjct:    27 VVSGSSSHHEPSTMEVELDSFQRQVAEKFIDLNASS-NDLLSLEWIGKLLDSFLCCQEEF 85

Query:    79 KDLITELELPVSDWD-EKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDS 137
             + ++      +S    ++ I  Y + S+  LD+C A    + ++ Q   L   V+  LDS
Sbjct:    86 RAIVFNHRSQISKSPMDRLISDYFERSIKALDVCNAIRDGIEQIRQWEKLADIVISALDS 145

Query:   138 SSPTQFGR 145
               P   G+
Sbjct:   146 HRPIGEGQ 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2030591 AT1G22030 "AT1G22030" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query:    56 DDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFS 115
             ++ +++ +++ A+  L  +H+ +  L+ +L+LPV D   KW+D Y+D S  L + C+   
Sbjct:    30 NNFMSVHFLQRALCLLRTSHSHLTLLVQKLQLPVGD---KWLDEYMDESSKLWEACLVIK 86

Query:   116 SVLTKVSQGHLLLQCVLHTLDSSSPTQFGR 145
             S ++ V         +  TLD     Q  R
Sbjct:    87 SAVSSVENFSSAGISIASTLDRRLSPQLSR 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
pfam05633	389	pfam05633, DUF793, Protein of unknown function (DU	6e-04

>gnl|CDD|218666 pfam05633, DUF793, Protein of unknown function (DUF793)

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 74/353 (20%), Positives = 126/353 (35%), Gaps = 66/353 (18%)

Query: 36  LADFEETLAERLRKLMPK--DKDDILNLSWMRLAMES-LC---ETHNVIKDLITELELPV 89
           L  F+  +AER   L+      +DIL+L W+R  ++S LC   E   +   L    +  +
Sbjct: 39  LESFQRHVAERFIDLLSSSISSEDILSLEWLRKLLDSFLCCEEEFRAI---LFNHRDTQI 95

Query: 90  SDWD-EKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPT---QFGR 145
           S    ++ +   LD SV  LD+C A    +  + Q   L +  +  L    P    Q  R
Sbjct: 96  SKPPLDRLVPEMLDRSVKALDVCNAVRDGIDSIRQWQKLAEIAVTALKQRRPLGEGQVRR 155

Query: 146 ACSSL--------------------------DNW---REHISSKNP-------------- 162
           A  +L                           +W      I S                 
Sbjct: 156 AKKALTDLAIGMLDEKDSGGSGGGHRNRSFGRSWSFHHRSIGSSGGGTGGHLRSLSWSVS 215

Query: 163 RVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAF----SGSA 218
           R  S    L  + A+L  P+  ++A    L   +Y +  + VFV  +  AA      G  
Sbjct: 216 RNWSAAKQLQAMGANLATPRGNDAAATNGLAVPVYIMSSVLVFVMWVLVAAIPCQDRGLQ 275

Query: 219 KNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN 278
            +L          WA    +L   +  E +         +L E+  ++   + L E   +
Sbjct: 276 VHLPL--PPRHFQWAGPLMSLHDRIGEESKKKEKKNGCGLLEEIHRMEKISRSLMEFADS 333

Query: 279 ---EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAV-DGFFKIVLSGRDAL 327
               ++  +E  + + V +L +    +  GLD L + V + F +IV S  + L
Sbjct: 334 FRFPLEDDKEVEVAERVAELEEICRAMEDGLDPLQRQVREVFHRIVRSRTEIL 386

This family consists of several plant proteins of unknown function. Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	100.0
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	100.0
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	99.94
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	85.15

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=100.00  E-value=3.6e-66  Score=498.92  Aligned_cols=322  Identities=38%  Similarity=0.609  Sum_probs=288.5

Q ss_pred             CCCCCCCcccccC------CCCCC--CCCcchhhHHHHHHHHHHHHhhhCCCC--CCCcccHHHHHHHHHHHHHHHHHHH
Q 018714           10 PFFPFGNPFRMMS------PKGSR--LSPKLVSLLADFEETLAERLRKLMPKD--KDDILNLSWMRLAMESLCETHNVIK   79 (351)
Q Consensus        10 ~~~~~~~~~~~~~------~~~~~--~~~~~~p~l~~F~~~L~~rl~~L~~~~--~~~~lSl~wl~~~l~~L~~~h~~~~   79 (351)
                      -|.+||+++.+++      |..+|  .++.+++.++.|++++++||.+|.++.  +++++|++||+++|+.++.||++|.
T Consensus         5 ~~~~~~~s~ls~rr~~~~~~~~~~~~~~~~~~~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr   84 (389)
T PF05633_consen    5 DYQGFGRSLLSLRRDQVHSMSHNHEQEAESLEAELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFR   84 (389)
T ss_pred             ccccccchhhhccccCCCCCCCCcccccccchhhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence            3455888887765      33333  345567799999999999999999885  3689999999999999999999999


Q ss_pred             HHHhhcCC-CCC-chhhhHHHHHHhhhhhHHhHHHHHHHHHhhhhhhHHHHHHHHHhcCCC---ChhHHHHHHHhHhHHH
Q 018714           80 DLITELEL-PVS-DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS---SPTQFGRACSSLDNWR  154 (351)
Q Consensus        80 ~Li~~~~l-p~~-~~~~k~vdeyLD~SlkLLDvCna~k~~l~~~k~~~~~lq~al~~l~~~---~~~~~~ra~~~l~~~~  154 (351)
                      .+|++++. |++ +|++|||+||||+|+|+|||||+++++|+++++|++.+++|+|.+++.   ++++++||+++|.+|.
T Consensus        85 ~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~~~~~~rRAr~aL~dl~  164 (389)
T PF05633_consen   85 ALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPLGEGQLRRARKALSDLK  164 (389)
T ss_pred             HHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence            99999987 988 799999999999999999999999999999999999999999999986   7899999999999998


Q ss_pred             Hhh-----------hccCccch--------------------------------HHHHHHHHHhhccCCCccccchhhHH
Q 018714          155 EHI-----------SSKNPRVE--------------------------------SCRSILDNLVASLDLPKVKNSAKGKV  191 (351)
Q Consensus       155 ~~~-----------~~~~~~i~--------------------------------~~~~~L~~~~~~l~~~k~~~~~~~~~  191 (351)
                      ..|           .++|+.++                                .|.++|+.|.++|..||.+++.++++
T Consensus       165 ~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~g  244 (389)
T PF05633_consen  165 IAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRG  244 (389)
T ss_pred             HHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccch
Confidence            765           12333221                                36789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccc-cccc-cCCCCCchHHHHHHHHHHHHHHHhhhhcCcchhHhHHHHHHHHH
Q 018714          192 LMRAMYGVKVLTVFVCSIFAAAFSGSAKNL-LELN-VSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSV  269 (351)
Q Consensus       192 l~~~l~~~~~vt~~v~~~Ll~als~~~~~~-~~~~-vp~~~~Ws~~~~~Lq~rv~~e~~~~~~~g~~~~l~El~~vd~av  269 (351)
                      ++.++|+|++||+||||+|++|++|+++.+ .++. +|++++|+.+|..||++|++|+++++++|+++.++||++|++++
T Consensus       245 L~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~v  324 (389)
T PF05633_consen  245 LLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEASV  324 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence            999999999999999999999999998755 5888 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh---ccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 018714          270 KKLYEVIQN---EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL  331 (351)
Q Consensus       270 ~~L~~~i~~---~~~~e~~~~~~~~veel~~~~e~Le~gle~Le~~vd~lFr~li~~R~~LL~~l  331 (351)
                      ++|+..++.   +..+|+++++++.|+||++.++.|++|||+|++|||++||+||++|+++|+.|
T Consensus       325 r~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l  389 (389)
T PF05633_consen  325 RELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL  389 (389)
T ss_pred             HHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence            999987765   44567788999999999999999999999999999999999999999999975

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=100.00  E-value=9.2e-34  Score=261.26  Aligned_cols=224  Identities=21%  Similarity=0.339  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCC------chhhhHHHHHHhhhhhHHhHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCh
Q 018714           67 AMESLCETHNVIKDLITELELPVS------DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSP  140 (351)
Q Consensus        67 ~l~~L~~~h~~~~~Li~~~~lp~~------~~~~k~vdeyLD~SlkLLDvCna~k~~l~~~k~~~~~lq~al~~l~~~~~  140 (351)
                      .|..|.++|+|+++|+   ++|.+      .+ +||||++||+|++|||+|++++|.+.++|++++++|+|+||.++ ++
T Consensus         2 gL~~L~~Ly~~~~ell---~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~-~~   76 (231)
T PF03087_consen    2 GLSGLKDLYECLEELL---QLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDD-GS   76 (231)
T ss_pred             chhHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hh
Confidence            5788999999999999   99987      34 79999999999999999999999999999999999999999983 22


Q ss_pred             hHHHHHHHhHhHHHHhhhccCccchHHHHHHHHHhhccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 018714          141 TQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKN  220 (351)
Q Consensus       141 ~~~~ra~~~l~~~~~~~~~~~~~i~~~~~~L~~~~~~l~~~k~~~~~~~~~l~~~l~~~~~vt~~v~~~Ll~als~~~~~  220 (351)
                        +.-.+++|..+++.+   +|.+.|+...|+.+.++ ..+...+...+..++.+++++..+|+.+|.+++.+|+.|...
T Consensus        77 --~~~~i~sy~~~rKk~---kK~i~K~~~~lk~~~~~-~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~  150 (231)
T PF03087_consen   77 --IESEIASYIRSRKKA---KKEIAKLLRSLKRMSNK-SSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKK  150 (231)
T ss_pred             --HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcc-cCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence              344455566666777   66788888889998876 222111111245589999999999999999999999986554


Q ss_pred             ccccccCCCCCchHHHHHHHHHHHHHHHhhhhcCcchhHhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 018714          221 LLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD  300 (351)
Q Consensus       221 ~~~~~vp~~~~Ws~~~~~Lq~rv~~e~~~~~~~g~~~~l~El~~vd~av~~L~~~i~~~~~~e~~~~~~~~veel~~~~e  300 (351)
                            |+..+|+......+++..++..       ....+|++.++.+...         +.       +.++..++.+|
T Consensus       151 ------~~~~~wslvsk~~~~~~~~~~~-------~~~~~e~~~~d~~~~~---------~~-------e~~~~~~~~Le  201 (231)
T PF03087_consen  151 ------SKSSKWSLVSKLMQKKRSCDSS-------EENRNEFEKVDAALKS---------DE-------EEVQNAQKRLE  201 (231)
T ss_pred             ------ccccchhHHHHHHhcccccchh-------HHHHHHHHHHHHHhhh---------hh-------HHHHHHHHHHH
Confidence                  5678898776666665432211       1256899999987643         11       33778899999


Q ss_pred             HHhhchHHHHHHHhHHHHHHHHhHHHHHhh
Q 018714          301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCN  330 (351)
Q Consensus       301 ~Le~gle~Le~~vd~lFr~li~~R~~LL~~  330 (351)
                      +||.+|++||.++|++||+||++||+||||
T Consensus       202 ~LE~~Ie~lE~glE~vFR~LIktRVSLLNI  231 (231)
T PF03087_consen  202 ELEECIEELEEGLECVFRRLIKTRVSLLNI  231 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999997

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=99.94  E-value=1.6e-25  Score=215.43  Aligned_cols=294  Identities=19%  Similarity=0.298  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHhhhCCCCC--C--CcccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhh----hHHHHHHhhhhhH
Q 018714           36 LADFEETLAERLRKLMPKDK--D--DILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDE----KWIDVYLDISVNL  107 (351)
Q Consensus        36 l~~F~~~L~~rl~~L~~~~~--~--~~lSl~wl~~~l~~L~~~h~~~~~Li~~~~lp~~~~~~----k~vdeyLD~SlkL  107 (351)
                      +++||+.|++|+++++.+.+  .  .++|++++.+..++|+++++++.+.|++++..  .|++    .+|.+|||.|.+.
T Consensus         1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~d--i~~~~~L~~Lv~~YFd~S~~a   78 (336)
T PF05055_consen    1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKD--IWKNPELFRLVSDYFDSSLEA   78 (336)
T ss_pred             CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHH--hhcChhHHHHHHHHHHhhHHH
Confidence            46899999999999998742  2  45789999999999999999999999998876  4554    5999999999999


Q ss_pred             HhHHHHHHHHHhhhhhhHHHHHHHHHhcCCCChh-----HHHHHHHhHhHHHHhhhccCccchH-HHHHHHH-------H
Q 018714          108 LDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPT-----QFGRACSSLDNWREHISSKNPRVES-CRSILDN-------L  174 (351)
Q Consensus       108 LDvCna~k~~l~~~k~~~~~lq~al~~l~~~~~~-----~~~ra~~~l~~~~~~~~~~~~~i~~-~~~~L~~-------~  174 (351)
                      +|+|+++..||.+++.+++.++.|+..++..+..     .-.++.+++.++.++...+||+... ...+++.       |
T Consensus        79 ~~~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~L  158 (336)
T PF05055_consen   79 SDFCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSL  158 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999654321     1245566789999999999996544 3333332       2


Q ss_pred             hhccCCC-----ccccchhh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-ccc-ccccCCC--CCchH-HHHHHHHHH
Q 018714          175 VASLDLP-----KVKNSAKG-KVLMRAMYGVKVLTVFVCSIFAAAFSGSAK-NLL-ELNVSDT--LPWAP-AFSALQANV  243 (351)
Q Consensus       175 ~~~l~~~-----k~~~~~~~-~~l~~~l~~~~~vt~~v~~~Ll~als~~~~-~~~-~~~vp~~--~~Ws~-~~~~Lq~rv  243 (351)
                      .++|...     |+....++ +.+.++++.+.++++.|+++++++++.|+. .++ ...+|-.  ++|.. .+.++...+
T Consensus       159 l~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al  238 (336)
T PF05055_consen  159 LEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEAL  238 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHH
Confidence            2233211     22123333 568899999999999999999999976653 222 2334543  45743 344443222


Q ss_pred             HH--HHHhhhhcCcchhHhHHHHHHHHHHHHHHHHhhcc-------c-hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 018714          244 NA--EVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEV-------D-TVEEELLQKSVLDLGKRADNLSQGLDHLTKAV  313 (351)
Q Consensus       244 ~~--e~~~~~~~g~~~~l~El~~vd~av~~L~~~i~~~~-------~-~e~~~~~~~~veel~~~~e~Le~gle~Le~~v  313 (351)
                      ..  +.-....+|++++.++|+.|...|.+|...|+...       . .++...++..|++++++.+.|.+-||+||+++
T Consensus       239 ~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv  318 (336)
T PF05055_consen  239 KKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHV  318 (336)
T ss_pred             HHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            21  11112236999999999999999999999887521       1 12234689999999999999999999999999


Q ss_pred             hHHHHHHHHhHHHHHhhh
Q 018714          314 DGFFKIVLSGRDALLCNL  331 (351)
Q Consensus       314 d~lFr~li~~R~~LL~~l  331 (351)
                      .-+|+.|-++|..+|+-|
T Consensus       319 ~lC~~tInrAR~lVlq~I  336 (336)
T PF05055_consen  319 YLCFKTINRARTLVLQEI  336 (336)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999998753

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=85.15  E-value=19  Score=31.42  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             CCCchHHH-HHHHHHHHHHHHhhhhcCcchhHhHHHHHHHHHHHHHHHHhhc--c------chHHHHHHHHHHHHHHHHH
Q 018714          229 TLPWAPAF-SALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE--V------DTVEEELLQKSVLDLGKRA  299 (351)
Q Consensus       229 ~~~Ws~~~-~~Lq~rv~~e~~~~~~~g~~~~l~El~~vd~av~~L~~~i~~~--~------~~e~~~~~~~~veel~~~~  299 (351)
                      ||.|++.+ +.|++.|..--+.+.........-.++.|=.-++.+.......  .      -.++.+.++..++.|++..
T Consensus        48 GFRWNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~  127 (161)
T TIGR02894        48 GFRWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKEL  127 (161)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58997655 4577776422111111111111223555555666655421100  0      0123345777888888888


Q ss_pred             HHHhhchHHHHHHHhHHHHHHHHhHHHH
Q 018714          300 DNLSQGLDHLTKAVDGFFKIVLSGRDAL  327 (351)
Q Consensus       300 e~Le~gle~Le~~vd~lFr~li~~R~~L  327 (351)
                      +.|...+..+++.-..|+..+=++|...
T Consensus       128 ~~L~~~~~~~~eDY~~L~~Im~RARkl~  155 (161)
T TIGR02894       128 EKLRQRLSTIEEDYQTLIDIMDRARKLA  155 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999999855

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 51/379 (13%), Positives = 108/379 (28%), Gaps = 118/379 (31%)

Query: 2   SRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKD------- 54
           +  + P      +      +       +   VS L  + + L + L +L P         
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGV 158

Query: 55  ----KDDILNLSWMRLAMESLCETHNVIKDLITELELP--VSDWDEKWIDV-----YLDI 103
               K      +W  +A++       V      + ++   +      W+++        +
Sbjct: 159 LGSGK------TW--VALD-------VCLSYKVQCKMDFKIF-----WLNLKNCNSPETV 198

Query: 104 SVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS-----SPTQFGRACSSLDN-W-REH 156
              L  +        T  S     ++  +H++ +          +      L N    + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 157 ISSKNPRVESCR--------SILDNLVASL-------DLPKVKNSAKGKVLMRAMYGVK- 200
            ++ N     C+         + D L A+                 + K L+      + 
Sbjct: 259 WNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 201 ------VLTV--FVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILS 252
                 VLT      SI A +          L   D   W         N +     I S
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRD------GLATWDN--W------KHVNCDKLTTIIES 361

Query: 253 SGRATVLNELEAVDGSVKKLY----------------------EVIQNEVDTVEEELLQK 290
           S     LN LE  +   +K++                      +VI+++V  V  +L + 
Sbjct: 362 S-----LNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 291 SVLDLGKRADNLSQGLDHL 309
           S+++  K+    +  +  +
Sbjct: 415 SLVE--KQPKESTISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00