Citrus Sinensis ID: 018716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHcccccccccEEEEEcccccHHHHHHcccccccEEEEcccHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEccEEEEccccHHHHHHHHHHccccEEEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccccHHccccccccEcccccccccccEEEEEcEEEccccccccEEEEccEEEEcccEcHHHHHcccccccccccEccccEEHHHHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHccccEEEEEcccHHHHHHcccccEEEEccHcccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccHHHcccccHHHHccccccccccccccccccHHHHHccccccHHccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
mrapsllaqclpglapqdrgnhsmsstisekdahlpcpaveilpsKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGftgsemisskpdgflKCWESSIDLVNVLKHEirdgqlsfrGKRVLELScgyglpgifaclkgagtvhfqdlsaetircttVPNVLANLEQARErqsrqpessltpsrqtlapsvhfyagdweeLPTVLSVVRNDvsevttgmslsfseedfmdgcssqdgsiigqdsssrrsrklsgsraweraseadqgeggydvillteipysVTSLKKLYLLIKKclrppygvvyLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Flexible Loop (DISEMBL)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARErqsrqpessltpsrqtlAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDgsiigqdsssrrsrklsgsraweraseadqgeggydVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAhlikemtdrDIWKFFLK
Low Complexity Region (SEG)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDsssrrsrklsgsrAWERASEADQGEGGYDVILLTEIPYSVTSlkklyllikkclRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Disordered region (IsUnstruct)
**********************************LPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN*************************SVHFYAGDWEELPTVLSVVRNDVSEVTT***************************************************GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFL*
Disordered Region (DISOPRED)
****SLL*QC***********************************KVAHLYKYAGDNVDLQAIS*****************EMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQAR***************QTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Disordered Region (DISEMBL)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ*****************QTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQ********************************EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Disordered Region (DISPRO)
****SLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA*****************TLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q2KIJ2	373	Histidine protein methylt	yes	no	0.401	0.378	0.324	2e-13
Q55DL2	309	Histidine protein methylt	yes	no	0.225	0.255	0.440	7e-12
O95568	372	Histidine protein methylt	yes	no	0.333	0.314	0.333	3e-11
Q9CZ09	362	Histidine protein methylt	yes	no	0.472	0.458	0.274	7e-11
Q4KM84	362	Histidine protein methylt	yes	no	0.356	0.345	0.306	3e-10
Q9UTQ8	339	Histidine protein methylt	yes	no	0.467	0.483	0.227	9e-05

>sp|Q2KIJ2|MET18_BOVIN Histidine protein methyltransferase 1 homolog OS=Bos taurus GN=METTL18 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 57  NVDLQAISMFKGKVSVADIIG---FTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQ 113
           N+ +   ++ K      +II     + S++IS   +G LK WE + DL+  L       +
Sbjct: 128 NISIMKTTLLKENFPGENIISKSFSSHSDLISGVYEGGLKIWECTFDLLAYL----TKAK 183

Query: 114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 173
           + F GK+VL+L CG GL GI A   GA  +HFQD ++  I   T+PNV+AN     E   
Sbjct: 184 VKFAGKKVLDLGCGSGLLGIMALKGGAKEIHFQDYNSVVIDEVTLPNVVANSTLEDEEND 243

Query: 174 RQPESSLTPSRQTLAPSV---HFYAGDWEEL 201
                     R T+A  +    F++G+W E 
Sbjct: 244 VNEPDVKRLRRSTVAQELCKCRFFSGEWSEF 274

Probable histidine methyltransferase.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q55DL2|MET18_DICDI Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 81  SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 140
           +++I    +G  K WE SID++N L  E    ++   GK+VLE+ CG+GLPGI+ CL   
Sbjct: 119 TDLIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNG 173

Query: 141 GTVHFQDLSAETIRCTTVPNVLAN 164
             V FQD + E I   T PNVL N
Sbjct: 174 SIVTFQDYNEEVIYNLTQPNVLIN 197

Probable histidine methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O95568|MET18_HUMAN Histidine protein methyltransferase 1 homolog OS=Homo sapiens GN=METTL18 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 81  SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 140
           S++I+   +G LK WE + DL+          ++ F GK+VL+L CG GL GI A   G+
Sbjct: 155 SDLITGVYEGGLKIWECTFDLLAYF----TKAKVKFAGKKVLDLGCGSGLLGITAFKGGS 210

Query: 141 GTVHFQDLSAETIRCTTVPNVLANLE-QARERQSRQPE-SSLTPSRQTLAPSVHFYAGDW 198
             +HFQD ++  I   T+PNV+AN   +  E    +P+       + T      F++G+W
Sbjct: 211 KEIHFQDYNSMVIDEVTLPNVVANSTLEDEENDVNEPDVKRCRKPKVTQLYKCRFFSGEW 270

Query: 199 EEL 201
            E 
Sbjct: 271 SEF 273

Probable histidine methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CZ09|MET18_MOUSE Histidine protein methyltransferase 1 homolog OS=Mus musculus GN=Mettl18 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 27/193 (13%)

Query: 14  LAPQDRGNHSMSSTISEKDAHLPCP--AVEILPSKVAHLYKYAGDNVDLQAISMFKGKVS 71
           + P+D  NH + +T+ E    LP P  A   +   V+   K+ G+N+  ++ S       
Sbjct: 94  VMPKDV-NHVLENTVLEM---LPGPQHANTAVVKTVSLKEKFPGENIVSKSFS------- 142

Query: 72  VADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLP 131
                  + S++I    +G LK WE + DL+          ++ F G++VL+L CG GL 
Sbjct: 143 -------SHSDLIPGVYEGGLKIWECTFDLLTYFT----KAKVKFAGQKVLDLGCGSGLL 191

Query: 132 GIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV 191
           GI A   GA  VHFQD +   I   T+PNV+AN+    +   +         +  +   +
Sbjct: 192 GITASKGGAREVHFQDYNGLVIDEVTLPNVVANVPLQDDSNGKNEPDGKRQRKSEVGREI 251

Query: 192 ---HFYAGDWEEL 201
                ++G+W E 
Sbjct: 252 CKCRLFSGEWAEF 264

Probable histidine methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q4KM84|MET18_RAT Histidine protein methyltransferase 1 homolog OS=Rattus norvegicus GN=Mettl18 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 35/160 (21%)

Query: 52  KYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRD 111
           K+ G+N+  Q+ S              + S++I    +G LK WE + DL+         
Sbjct: 130 KFPGENIVSQSFS--------------SHSDLIPGVYEGGLKIWECTFDLMTYFTK---- 171

Query: 112 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL------ 165
            ++ F G++VL+L CG GL GI A   GA  VHFQD +   I   T+PNV+AN+      
Sbjct: 172 AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVPLQGDS 231

Query: 166 ----EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL 201
               E A +RQ R+ E +    +         ++G+W E 
Sbjct: 232 NGINEPAGKRQ-RKSEVAQETCK------CRLFSGEWAEF 264

Probable histidine methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9UTQ8|HPM1_SCHPO Histidine protein methyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1071.05 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 60/224 (26%)

Query: 81  SEMISSKPDGFLKCWESSIDLVNVLKH-EIRDGQLSFRGKRVLELSCGYGLPGIFACLKG 139
           ++++ +  +G  K WE S+DL N +K  ++    L+     VLEL CG  +P I +C + 
Sbjct: 92  NDLVPNVYEGGYKTWECSLDLANEIKKIDVVKNNLT----TVLELGCGSAIP-ILSCFQE 146

Query: 140 ------AGTVHFQDLSAETIRCTTVPNVLANLE-QARERQSRQPESSLTPSRQTLAPSVH 192
                   T+ FQD + + +R  T+PN+L N     +E  S +   ++  S         
Sbjct: 147 FYKHRIPCTLVFQDFNVDVLRYVTLPNLLLNWYFCTQEHDSSEKHGTIDVS--------- 197

Query: 193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL 252
                    P++L    +D++             +F+ GC S++  ++ Q +        
Sbjct: 198 ---------PSLLQEFSDDLARTNIYC-------EFLCGCWSEEMQLLIQRT-------- 233

Query: 253 SGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKK-LYLLIKK 295
                         G+  + ++L +E  YS+ SL+  LY+L+K 
Sbjct: 234 -------------YGDHYFSLVLASETIYSLPSLENFLYMLLKN 264

Required for histidine methylation of RPL3 at 'His-243'.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
255587050	350	conserved hypothetical protein [Ricinus	0.997	1.0	0.846	1e-177
224132700	350	predicted protein [Populus trichocarpa]	0.997	1.0	0.834	1e-177
225433854	350	PREDICTED: histidine protein methyltrans	0.997	1.0	0.834	1e-173
224095700	351	predicted protein [Populus trichocarpa]	0.997	0.997	0.823	1e-169
449468792	350	PREDICTED: histidine protein methyltrans	0.997	1.0	0.837	1e-167
147805782	328	hypothetical protein VITISV_017347 [Viti	0.934	1.0	0.777	1e-157
363807740	330	uncharacterized protein LOC100786056 [Gl	0.937	0.996	0.794	1e-152
356550366	346	PREDICTED: uncharacterized protein LOC10	0.982	0.997	0.789	1e-152
18406207	351	S-adenosyl-L-methionine-dependent methyl	0.991	0.991	0.751	1e-151
16226903	351	At2g43320/T1O24.6 [Arabidopsis thaliana]	0.991	0.991	0.751	1e-150

>gi|255587050|ref|XP_002534114.1| conserved hypothetical protein [Ricinus communis] gi|223525826|gb|EEF28265.1| conserved hypothetical protein [Ricinus communis]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/351 (84%), Positives = 325/351 (92%), Gaps = 1/351 (0%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLLAQCLPGL P DR + S+SS +S++D HLP PAVEILPSK+AH YKYAG+NVDL
Sbjct: 1   MRAPSLLAQCLPGLVPHDRASVSISS-VSDRDVHLPSPAVEILPSKMAHPYKYAGENVDL 59

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
           Q +++FKG+VSVADIIGFTGSEMISSKPDG LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVSVADIIGFTGSEMISSKPDGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C YGLPGIFACLKGA TVHFQD+SAE IRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGLPGIFACLKGACTVHFQDMSAEMIRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSR TL+PSVHFYAGDWEELPTVLS+VRND  E T GMSLSFSEEDFMDGCSSQDGSI+
Sbjct: 180 TPSRHTLSPSVHFYAGDWEELPTVLSIVRNDALEATPGMSLSFSEEDFMDGCSSQDGSIV 239

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           GQ++SSRRSRKLSGSRAWERA+E D GEGGYDVIL+T+IPYSVTSLKKLY LIKKCLRPP
Sbjct: 240 GQETSSRRSRKLSGSRAWERANETDHGEGGYDVILMTDIPYSVTSLKKLYALIKKCLRPP 299

Query: 301 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           YGV+YLATK+NYVGFNN ARHL+SLVDEEGIFGAHL+KEM +RDIWKFFLK
Sbjct: 300 YGVLYLATKRNYVGFNNGARHLKSLVDEEGIFGAHLVKEMAERDIWKFFLK 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132700|ref|XP_002327859.1| predicted protein [Populus trichocarpa] gi|222837268|gb|EEE75647.1| predicted protein [Populus trichocarpa]

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/351 (83%), Positives = 328/351 (93%), Gaps = 1/351 (0%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLLAQCLPGLAPQDRG+HSMS+ +SE+D +LP PAVEILPSK+ H YKY+G+NV+ 
Sbjct: 1   MRAPSLLAQCLPGLAPQDRGSHSMSA-VSERDVNLPTPAVEILPSKMVHPYKYSGENVEF 59

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
           Q +++FKG+V+VADIIGFTGSEMISSK DG+LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVNVADIIGFTGSEMISSKTDGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C YG+PGIFACLKGA TVHFQD +AETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGIPGIFACLKGASTVHFQDQNAETIRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSRQ LAPSVHFYAG+WEELPTVLSVVR+D  EVTTGMSLSFSEEDFMDGCSSQDGSII
Sbjct: 180 TPSRQMLAPSVHFYAGEWEELPTVLSVVRSDTFEVTTGMSLSFSEEDFMDGCSSQDGSII 239

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           GQ++SSRRSRKLSGSRAWERASE   GEGGYDVIL+T+IP+SV+SLKKLY LIKKCLRPP
Sbjct: 240 GQETSSRRSRKLSGSRAWERASETGHGEGGYDVILMTDIPHSVSSLKKLYALIKKCLRPP 299

Query: 301 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           YGV+YLATK+NYVGF+N AR LRSLVDEEG+FGAHL+KEMTDRD+WKFF+K
Sbjct: 300 YGVLYLATKRNYVGFSNGARQLRSLVDEEGVFGAHLVKEMTDRDVWKFFIK 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433854|ref|XP_002264228.1| PREDICTED: histidine protein methyltransferase 1 homolog [Vitis vinifera] gi|297743766|emb|CBI36649.3| unnamed protein product [Vitis vinifera]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/351 (83%), Positives = 318/351 (90%), Gaps = 1/351 (0%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLLAQCLPGL   D+G+HSMSS ISE+D HL  PAVEILPSK+AH YKYAG+NVDL
Sbjct: 1   MRAPSLLAQCLPGLVAHDKGSHSMSS-ISERDVHLCSPAVEILPSKMAHPYKYAGENVDL 59

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
           Q + +FKG+VSVADIIGF GSEMISSKP+G LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLHVFKGRVSVADIIGFNGSEMISSKPEGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C YGLPGIFACLKGA TVHFQDL+AE IRCTT+PNVLANLEQAR++QSRQPES L
Sbjct: 120 VLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIPNVLANLEQARDKQSRQPESPL 179

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSRQTLAP VHFYAGDWEELPTVLS+VR + SEV TGM+LSFSEEDFMDGCSS DGS+ 
Sbjct: 180 TPSRQTLAPVVHFYAGDWEELPTVLSIVRTEGSEVPTGMNLSFSEEDFMDGCSSHDGSLT 239

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           G + SSRRSRKLSGSRAWERASE D GEGGYDVIL+TEIPYSVTSLKKLY LIKKCLRPP
Sbjct: 240 GHEFSSRRSRKLSGSRAWERASEMDSGEGGYDVILMTEIPYSVTSLKKLYALIKKCLRPP 299

Query: 301 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           YGV+YLATKKNYVGFNN AR LR+LVDEEG FG HL+KEM+DRD+WKFFLK
Sbjct: 300 YGVIYLATKKNYVGFNNGARVLRNLVDEEGFFGVHLVKEMSDRDVWKFFLK 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095700|ref|XP_002310441.1| predicted protein [Populus trichocarpa] gi|222853344|gb|EEE90891.1| predicted protein [Populus trichocarpa]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/352 (82%), Positives = 320/352 (90%), Gaps = 2/352 (0%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MR PSL AQCLPGL PQDRGN+S+S T+ E+D  LP PAVEILPSK+ H YKYAG+NV+ 
Sbjct: 1   MRTPSLFAQCLPGLLPQDRGNNSVS-TVLERDVVLPTPAVEILPSKMVHPYKYAGENVEF 59

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
           Q +++FKG+VSVADII F GSE ISSK DG+LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVSVADIIAFVGSETISSKTDGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C YG+PGIF+CLKGA TVHFQDL+AETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGIPGIFSCLKGASTVHFQDLNAETIRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSRQTLAPSVHFYAG+WEELPTVLSVVRND  EVTTGMSLSFSEEDFMDGCSS DGSII
Sbjct: 180 TPSRQTLAPSVHFYAGEWEELPTVLSVVRNDTFEVTTGMSLSFSEEDFMDGCSSLDGSII 239

Query: 241 GQDS-SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRP 299
           GQ++ S RRSRKLSGS+AWERASE D GEGGYDVIL+T+IPYS++SLKKLY LIKKCLRP
Sbjct: 240 GQETSSRRRSRKLSGSQAWERASETDHGEGGYDVILMTDIPYSISSLKKLYALIKKCLRP 299

Query: 300 PYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           PYGV+YLATK+NYVGFNN AR LRSLVDEEGIFGAHL+KEMTDRD+WKFF K
Sbjct: 300 PYGVLYLATKRNYVGFNNGARQLRSLVDEEGIFGAHLVKEMTDRDVWKFFFK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468792|ref|XP_004152105.1| PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis sativus] gi|449484635|ref|XP_004156936.1| PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis sativus]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/351 (83%), Positives = 321/351 (91%), Gaps = 1/351 (0%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLL+QCLPGL PQD+G+HS S +ISE+D HLP PAVEILPSK AH YKYAG+NVDL
Sbjct: 1   MRAPSLLSQCLPGLLPQDKGSHS-SPSISERDVHLPSPAVEILPSKTAHPYKYAGENVDL 59

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
           Q +++FKG+VSVADII F GSE  SSKP+G LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVSVADIIAFNGSESTSSKPEGHLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C YGLPG+FACLKGA  VHFQDLSAET+RCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGLPGVFACLKGASIVHFQDLSAETVRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSR TLAPSVHFYAGDWEELPTVLSVVR D  E  TGMSLSFSEEDFMDGCSSQDGSII
Sbjct: 180 TPSRHTLAPSVHFYAGDWEELPTVLSVVRGDGFEAPTGMSLSFSEEDFMDGCSSQDGSII 239

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           G +SSSRRSRKLSGSRAWERASEADQGEGGYDVIL+ EIP+S+ SLKKLY LIKKC+RPP
Sbjct: 240 GHESSSRRSRKLSGSRAWERASEADQGEGGYDVILMAEIPFSLNSLKKLYALIKKCVRPP 299

Query: 301 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           YGV+YLATKKNYVGFN+ ARHLR+LVDEEG+FGAHL+KEMTDRD+WKFFLK
Sbjct: 300 YGVLYLATKKNYVGFNSGARHLRNLVDEEGVFGAHLVKEMTDRDVWKFFLK 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805782|emb|CAN69477.1| hypothetical protein VITISV_017347 [Vitis vinifera]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/351 (77%), Positives = 297/351 (84%), Gaps = 23/351 (6%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLLAQCLPGL   D+G+HSMSS ISE+D HL  PAVEILPSK+AH YKYAG+NVDL
Sbjct: 1   MRAPSLLAQCLPGLVAHDKGSHSMSS-ISERDVHLCSPAVEILPSKMAHPYKYAGENVDL 59

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
           Q + +F+G                       LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLHVFQGS----------------------LKSWDSSIDLVNVLKHEIRDGQLSFRGKR 97

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C YGLPGIFACLKGA TVHFQDL+AE IRCTT+PNVLANLEQAR++QSRQPES L
Sbjct: 98  VLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIPNVLANLEQARDKQSRQPESPL 157

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSRQTLAP VHFYAGDWEELPTVLS+VR + SEV TGM+LSFSEEDFMDGCSS DGS+ 
Sbjct: 158 TPSRQTLAPVVHFYAGDWEELPTVLSIVRTEGSEVPTGMNLSFSEEDFMDGCSSHDGSLT 217

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           G + SSRRSRKLSGSRAWERASE D GEGGYDVIL+TEIPYSVTSLKKLY LIKKCLRPP
Sbjct: 218 GHEFSSRRSRKLSGSRAWERASEMDSGEGGYDVILMTEIPYSVTSLKKLYALIKKCLRPP 277

Query: 301 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           YGV+YLATKKNYVGFNN AR LR+LVDEEG FG HL+KEM+DRD+WKFFLK
Sbjct: 278 YGVIYLATKKNYVGFNNGARVLRNLVDEEGFFGVHLVKEMSDRDVWKFFLK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807740|ref|NP_001242428.1| uncharacterized protein LOC100786056 [Glycine max] gi|255636338|gb|ACU18508.1| unknown [Glycine max]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/336 (79%), Positives = 294/336 (87%), Gaps = 7/336 (2%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAP+LLAQCLPGL P DRG+ S+SS + EKD HLP PAVEILPSK  H  K  G+N+D 
Sbjct: 1   MRAPALLAQCLPGLVPHDRGSLSISS-VPEKDFHLPSPAVEILPSKTVHTEKDNGENID- 58

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
                FKG VSVADI+GF+GSE IS KPDG+LK W SSIDLV+VLKHEIRDGQL+FRGKR
Sbjct: 59  ----HFKGLVSVADIVGFSGSETISLKPDGYLKSWTSSIDLVSVLKHEIRDGQLTFRGKR 114

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLELSC YGLPGIFACLKGA  VHFQD SAET+RCTT+PNVLANL+QAR+RQSRQPES L
Sbjct: 115 VLELSCNYGLPGIFACLKGASVVHFQDQSAETVRCTTIPNVLANLKQARDRQSRQPESPL 174

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSRQTLAPSV+FYAGDWEELP+VLS+ ++D  EV  GMSLSFSEEDFMDGCSSQDGSII
Sbjct: 175 TPSRQTLAPSVNFYAGDWEELPSVLSIAKSDGYEVMPGMSLSFSEEDFMDGCSSQDGSII 234

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           G +S SRRSRKLSGSRAWER SEADQGEGGYD+IL+TEIPYSVTSLKKLY LIKKCLRPP
Sbjct: 235 GHESHSRRSRKLSGSRAWERGSEADQGEGGYDIILMTEIPYSVTSLKKLYALIKKCLRPP 294

Query: 301 YGVVYLA-TKKNYVGFNNAARHLRSLVDEEGIFGAH 335
           YGVV+LA TK++YVGF+N  R LRSLVDEEGIFGAH
Sbjct: 295 YGVVHLAPTKRHYVGFSNGVRQLRSLVDEEGIFGAH 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550366|ref|XP_003543558.1| PREDICTED: uncharacterized protein LOC100810964 [Glycine max]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/352 (78%), Positives = 306/352 (86%), Gaps = 7/352 (1%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAP+LLAQCLPGL P DRG+ SMSS + EKD HLP PAVEILPSK  H  K  G+N+D 
Sbjct: 1   MRAPALLAQCLPGLVPHDRGSLSMSS-VPEKDFHLPSPAVEILPSKAVHTDKDNGENID- 58

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
                FKG +SVADI+GF+GSE IS KPDG+LK W SSIDLV+VLKHEIRDGQL+FRGKR
Sbjct: 59  ----HFKGLISVADIVGFSGSETISLKPDGYLKYWTSSIDLVSVLKHEIRDGQLTFRGKR 114

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLELSC YGLPGIFACLKGA  VHFQD SAET+RCTT+PNVLANL+QAR+RQSRQPES L
Sbjct: 115 VLELSCNYGLPGIFACLKGASVVHFQDQSAETVRCTTIPNVLANLKQARDRQSRQPESPL 174

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 240
           TPSRQTLAPSV+FYAGDWEELP+VLS+V++D  EV  GMSLSFSEEDFMDGCSSQDGSII
Sbjct: 175 TPSRQTLAPSVNFYAGDWEELPSVLSIVKSDGYEVMPGMSLSFSEEDFMDGCSSQDGSII 234

Query: 241 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 300
           G +S SRRSRKLS SRAWER SEADQGEGGYDVIL+TEI YSVTSLKKLY LIKKCLRPP
Sbjct: 235 GHESYSRRSRKLSRSRAWERGSEADQGEGGYDVILMTEISYSVTSLKKLYALIKKCLRPP 294

Query: 301 YGVVYLA-TKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           YGV+YLA TK+ YVGF+N  R LRSLVDEEGIFGAHL+K++ DRDIWKFF K
Sbjct: 295 YGVLYLAPTKRPYVGFSNGVRQLRSLVDEEGIFGAHLVKDLADRDIWKFFHK 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406207|ref|NP_565997.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|145331107|ref|NP_001078045.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|14517476|gb|AAK62628.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|20196858|gb|AAB64311.2| expressed protein [Arabidopsis thaliana] gi|20197145|gb|AAM14937.1| expressed protein [Arabidopsis thaliana] gi|22136568|gb|AAM91070.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|330255156|gb|AEC10250.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|330255157|gb|AEC10251.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/354 (75%), Positives = 299/354 (84%), Gaps = 6/354 (1%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLLAQCLPGL PQDRG     S +SEKD  LP PAVEI+PSK    ++Y+G+N+D 
Sbjct: 1   MRAPSLLAQCLPGLLPQDRGG---VSALSEKDLQLPTPAVEIIPSKTVAHHRYSGENLDA 57

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
             + +FKGKVSVADIIG +GSE    K +G LK WESS+ LVNVLK+EIRDGQLSFRGKR
Sbjct: 58  LGLQVFKGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKR 117

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C +G+PGIFACLKGA +VHFQDLSAETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 118 VLELGCNFGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESPL 177

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSI 239
           TPSRQ ++ SV FYAG+WEEL TVLS++R DV E +   M+LSFSEEDFMDGCSSQDGSI
Sbjct: 178 TPSRQAISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSI 237

Query: 240 IGQ-DSSSRRSRKLSGSRAWERASEADQ-GEGGYDVILLTEIPYSVTSLKKLYLLIKKCL 297
            GQ D SSRRSRKLSGSRAWERA+E  Q GE GYDVIL+TEIPYS+TSLKKLY LIKKCL
Sbjct: 238 TGQPDFSSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCL 297

Query: 298 RPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           RPPYGV+YLA KK YVGFN+ A+HLR+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 298 RPPYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16226903|gb|AAL16294.1|AF428364_1 At2g43320/T1O24.6 [Arabidopsis thaliana]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/354 (75%), Positives = 298/354 (84%), Gaps = 6/354 (1%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKVAHLYKYAGDNVDL 60
           MRAPSLLAQCLPGL PQDRG     S +SEKD  LP PAVEI+PSK    ++Y+G+N+D 
Sbjct: 1   MRAPSLLAQCLPGLLPQDRGG---VSALSEKDLQLPTPAVEIIPSKTVAHHRYSGENLDA 57

Query: 61  QAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 120
             + +FKGKVSVADIIG +GSE    K +G LK WESS+ LVNVLK+EIRDGQLSFRGKR
Sbjct: 58  LGLQVFKGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKR 117

Query: 121 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 180
           VLEL C  G+PGIFACLKGA +VHFQDLSAETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 118 VLELGCNLGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESPL 177

Query: 181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSI 239
           TPSRQ ++ SV FYAG+WEEL TVLS++R DV E +   M+LSFSEEDFMDGCSSQDGSI
Sbjct: 178 TPSRQAISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSI 237

Query: 240 IGQ-DSSSRRSRKLSGSRAWERASEADQ-GEGGYDVILLTEIPYSVTSLKKLYLLIKKCL 297
            GQ D SSRRSRKLSGSRAWERA+E  Q GE GYDVIL+TEIPYS+TSLKKLY LIKKCL
Sbjct: 238 TGQPDFSSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCL 297

Query: 298 RPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
           RPPYGV+YLA KK YVGFN+ A+HLR+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 298 RPPYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2041076	351	AT2G43320 "AT2G43320" [Arabido	0.988	0.988	0.692	2.6e-125
TAIR|locus:2129286	290	AT4G14000 "AT4G14000" [Arabido	0.467	0.565	0.437	8.6e-47
ZFIN|ZDB-GENE-090313-192	338	si:dkey-15f17.8 "si:dkey-15f17	0.321	0.334	0.411	4.3e-17
UNIPROTKB|Q2KIJ2	373	METTL18 "Histidine protein met	0.484	0.455	0.333	1.2e-15
UNIPROTKB|F1RSC8	365	METTL18 "Uncharacterized prote	0.507	0.487	0.336	7.2e-15
UNIPROTKB|O95568	372	METTL18 "Histidine protein met	0.344	0.325	0.353	1.1e-13
RGD|1306783	362	Mettl18 "methyltransferase lik	0.475	0.461	0.296	5.3e-13
UNIPROTKB|E2R3Y3	365	METTL18 "Uncharacterized prote	0.327	0.315	0.346	9.6e-13
MGI|MGI:1917212	362	Mettl18 "methyltransferase lik	0.470	0.455	0.280	1.2e-12
DICTYBASE|DDB_G0270580	309	DDB_G0270580 "UPF0558 protein"	0.225	0.255	0.440	3.9e-12

TAIR|locus:2041076 AT2G43320 "AT2G43320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 246/355 (69%), Positives = 279/355 (78%)

Query:     1 MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-VAHLYKYAGDNVD 59
             MRAPSLLAQCLPGL PQDRG     S +SEKD  LP PAVEI+PSK VAH ++Y+G+N+D
Sbjct:     1 MRAPSLLAQCLPGLLPQDRGG---VSALSEKDLQLPTPAVEIIPSKTVAH-HRYSGENLD 56

Query:    60 LQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGK 119
                + +FKGKVSVADIIG +GSE    K +G LK WESS+ LVNVLK+EIRDGQLSFRGK
Sbjct:    57 ALGLQVFKGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGK 116

Query:   120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS 179
             RVLEL C +G+PGIFACLKGA +VHFQDLSAETIRCTT+PNVLANLEQAR+RQSRQPES 
Sbjct:   117 RVLELGCNFGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESP 176

Query:   180 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGS 238
             LTPSRQ ++ SV FYAG+WEEL TVLS++R DV E +   M+LSFSEEDFMDGCSSQDGS
Sbjct:   177 LTPSRQAISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGS 236

Query:   239 IIGQ-DXXXXXXXXXXXXXAWERASEADQ-GEGGYDVILLTEIPYSVTSXXXXXXXXXXX 296
             I GQ D             AWERA+E  Q GE GYDVIL+TEIPYS+TS           
Sbjct:   237 ITGQPDFSSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKC 296

Query:   297 XRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 351
              RPPYGV+YLA KK YVGFN+ A+HLR+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct:   297 LRPPYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009414 "response to water deprivation" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2129286 AT4G14000 "AT4G14000" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 77/176 (43%), Positives = 110/176 (62%)

Query:    36 PCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGFLKCW 95
             P P VE+L  +V+    +  D + +  I++ KG+VS  ++ G   S+++    +G LK W
Sbjct:    33 PPPPVEVLSFEVSSSTDFEVDKLTIGEITLLKGRVSTKEVFGLPNSDLVPGVYEGGLKLW 92

Query:    96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155
             E SIDLV  L+ E + G LSF GKRVLEL CG+ LPGI+ACLKG+  VHFQD +AE +RC
Sbjct:    93 EGSIDLVKALEKESQTGNLSFSGKRVLELGCGHALPGIYACLKGSDAVHFQDFNAEVLRC 152

Query:   156 TTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRND 211
              T+PN+ ANL +          SS++ S +T    V F+AG+W E+  VL +V +D
Sbjct:   153 LTIPNLNANLSEK--------SSSVSVS-ET---EVRFFAGEWSEVHQVLPLVNSD 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

ZFIN|ZDB-GENE-090313-192 si:dkey-15f17.8 "si:dkey-15f17.8" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
 Identities = 51/124 (41%), Positives = 68/124 (54%)

Query:    81 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 140
             S++IS   +G LK WE + DL+  + +E   G++ F GKRVL+L CG GL GI A  +GA
Sbjct:   121 SDLISGVYEGGLKIWECTYDLLEYIDNE---GEV-FSGKRVLDLGCGAGLLGILALKRGA 176

Query:   141 GTVHFQDLSAETIRCTTVPNVLANLEQARERQ----SRQP--ESSLTPSRQTLAPSVHFY 194
               V FQD ++  I   T+PNV  N E+  E      S  P    SL  S Q L     F+
Sbjct:   177 IRVDFQDYNSTVIEQLTIPNVFLNCEEDDEDDDDDDSSPPLKRKSLNSS-QELLDHCGFF 235

Query:   195 AGDW 198
             +GDW
Sbjct:   236 SGDW 239

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q2KIJ2 METTL18 "Histidine protein methyltransferase 1 homolog" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 62/186 (33%), Positives = 94/186 (50%)

Query:    31 KDAHLPCPAVEILPSKVAH-LYKYAGDNVDLQAISMFKGKVSVADIIG--FTG-SEMISS 86
             K+  +P    ++L +KV   L      N+ +   ++ K      +II   F+  S++IS 
Sbjct:   101 KEHAVPKDLKKVLENKVTETLPGLQHVNISIMKTTLLKENFPGENIISKSFSSHSDLISG 160

Query:    87 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ 146
               +G LK WE + DL+  L       ++ F GK+VL+L CG GL GI A   GA  +HFQ
Sbjct:   161 VYEGGLKIWECTFDLLAYLTK----AKVKFAGKKVLDLGCGSGLLGIMALKGGAKEIHFQ 216

Query:   147 DLSAETIRCTTVPNVLAN--LEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWEEL 201
             D ++  I   T+PNV+AN  LE   E    +P+      R T+A  +    F++G+W E 
Sbjct:   217 DYNSVVIDEVTLPNVVANSTLED-EENDVNEPDVKRL-RRSTVAQELCKCRFFSGEWSEF 274

Query:   202 -PTVLS 206
                VLS
Sbjct:   275 CKLVLS 280

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1RSC8 METTL18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 66/196 (33%), Positives = 97/196 (49%)

Query:    31 KDAHLPCPAVEILPSKVAH-LYKYAGDNVDLQAISMFKGKVSVADIIG--FTG-SEMISS 86
             K+  LP    ++L SKV   L      N+ +    + K   S  +II   F+  S++I+ 
Sbjct:   101 KEHALPKDLKKVLESKVIETLPGLQHVNISVVKTILLKDNFSGENIISKSFSSHSDLITG 160

Query:    87 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ 146
               +G LK WE + DL+          ++ F GK+VL+L CG GL GI A   GA  +HFQ
Sbjct:   161 VYEGGLKIWECTFDLLAYFTK----AKVKFAGKKVLDLGCGSGLLGIMAFKGGAKEIHFQ 216

Query:   147 DLSAETIRCTTVPNVLAN--LEQARERQSRQPE-SSLTPSR--QTLAPSVHFYAGDWEEL 201
             D ++  I   T+PNV+AN  LE   E    +P+      S+  Q L     F++G+W E 
Sbjct:   217 DYNSVVIDEVTLPNVVANSTLED-EENDLNEPDVKRCRKSKVAQELC-KCRFFSGEWSEF 274

Query:   202 -PTVLSVVRNDVSEVT 216
                VLS  R ++ E T
Sbjct:   275 CKLVLS--REELFEKT 288

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|O95568 METTL18 "Histidine protein methyltransferase 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 46/130 (35%), Positives = 68/130 (52%)

Query:    81 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 140
             S++I+   +G LK WE + DL+          ++ F GK+VL+L CG GL GI A   G+
Sbjct:   155 SDLITGVYEGGLKIWECTFDLLAYFTK----AKVKFAGKKVLDLGCGSGLLGITAFKGGS 210

Query:   141 GTVHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPE-SSLTPSRQTLAPSVHFYAGD 197
               +HFQD ++  I   T+PNV+AN  LE   E    +P+       + T      F++G+
Sbjct:   211 KEIHFQDYNSMVIDEVTLPNVVANSTLED-EENDVNEPDVKRCRKPKVTQLYKCRFFSGE 269

Query:   198 WEEL-PTVLS 206
             W E    VLS
Sbjct:   270 WSEFCKLVLS 279

GO:0005737 "cytoplasm" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

RGD|1306783 Mettl18 "methyltransferase like 18" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
 Identities = 53/179 (29%), Positives = 81/179 (45%)

Query:    32 DAHLPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMISSKPDGF 91
             D  L    +E+LP    H+       + L+    F G+  V+     + S++I    +G 
Sbjct:   100 DQVLENKVLEMLPGS-QHVSTAVVKTISLK--EKFPGENIVSQSFS-SHSDLIPGVYEGG 155

Query:    92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE 151
             LK WE + DL+          ++ F G++VL+L CG GL GI A   GA  VHFQD +  
Sbjct:   156 LKIWECTFDLMTYFTK----AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGL 211

Query:   152 TIRCTTVPNVLANLE-QARERQSRQPESSLTPSRQTLAPSV--HFYAGDWEEL-PTVLS 206
              I   T+PNV+AN+  Q       +P        +    +     ++G+W E    VLS
Sbjct:   212 VIDEVTLPNVVANVPLQGDSNGINEPAGKRQRKSEVAQETCKCRLFSGEWAEFCKLVLS 270

GO:0005737 "cytoplasm" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

UNIPROTKB|E2R3Y3 METTL18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
 Identities = 43/124 (34%), Positives = 68/124 (54%)

Query:    81 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 140
             S++I+   +G LK WE + DL+          ++ F GKRVL+L CG GL GI A   GA
Sbjct:   150 SDLITGVYEGGLKIWECTFDLLAYFTK----AKVKFVGKRVLDLGCGSGLLGIVAFKGGA 205

Query:   141 GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQT-LAPSV---HFYAG 196
               +HFQD ++  I   T+PNV+AN     ++ +   E  +   R++ +A  +    F++G
Sbjct:   206 KEIHFQDYNSLVIDEVTLPNVVAN-STLEDKGNDVNEPDVKRCRKSEVAQELSKCRFFSG 264

Query:   197 DWEE 200
             +W E
Sbjct:   265 EWSE 268

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1917212 Mettl18 "methyltransferase like 18" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 50/178 (28%), Positives = 80/178 (44%)

Query:    28 ISEKDAH--LPCPAVEILPSKVAHLYKYAGDNVDLQAISMFKGKVSVADIIGFTGSEMIS 85
             +  KD +  L    +E+LP    H        V L+    F G+  V+     + S++I 
Sbjct:    94 VMPKDVNHVLENTVLEMLPGP-QHANTAVVKTVSLK--EKFPGENIVSKSFS-SHSDLIP 149

Query:    86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHF 145
                +G LK WE + DL+          ++ F G++VL+L CG GL GI A   GA  VHF
Sbjct:   150 GVYEGGLKIWECTFDLLTYFTK----AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHF 205

Query:   146 QDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWEE 200
             QD +   I   T+PNV+AN+    +   +         +  +   +     ++G+W E
Sbjct:   206 QDYNGLVIDEVTLPNVVANVPLQDDSNGKNEPDGKRQRKSEVGREICKCRLFSGEWAE 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

DICTYBASE|DDB_G0270580 DDB_G0270580 "UPF0558 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 37/84 (44%), Positives = 50/84 (59%)

Query:    81 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 140
             +++I    +G  K WE SID++N L  E    ++   GK+VLE+ CG+GLPGI+ CL   
Sbjct:   119 TDLIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNG 173

Query:   141 GTVHFQDLSAETIRCTTVPNVLAN 164
               V FQD + E I   T PNVL N
Sbjct:   174 SIVTFQDYNEEVIYNLTQPNVLIN 197

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG2920	282	consensus Predicted methyltransferase [General fun	100.0
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.94
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.79
COG3897	218	Predicted methyltransferase [General function pred	99.61
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.59
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.17
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.13
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.12
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.11
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.11
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.04
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.01
PLN02244	340	tocopherol O-methyltransferase	99.01
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.96
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.96
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.95
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.93
PRK14967	223	putative methyltransferase; Provisional	98.91
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.9
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.88
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.86
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.86
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.84
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.84
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.84
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.82
PRK11207	197	tellurite resistance protein TehB; Provisional	98.82
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.81
PRK14968	188	putative methyltransferase; Provisional	98.81
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.78
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.77
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.75
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.74
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.73
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.72
PRK12335	287	tellurite resistance protein TehB; Provisional	98.71
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.7
PLN02336	475	phosphoethanolamine N-methyltransferase	98.7
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.69
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.68
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.68
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.67
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.67
PLN02490	340	MPBQ/MSBQ methyltransferase	98.66
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.66
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.64
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.64
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.64
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.63
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.62
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.62
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.61
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.61
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.59
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.59
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.59
COG4123	248	Predicted O-methyltransferase [General function pr	98.57
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.57
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.56
PRK08317	241	hypothetical protein; Provisional	98.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.54
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.53
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.5
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.49
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.47
COG2890	280	HemK Methylase of polypeptide chain release factor	98.46
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.46
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.45
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.45
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.45
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.44
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.44
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.44
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.43
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.4
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.4
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.39
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.36
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.35
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.35
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.34
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.34
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.29
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.29
PLN02672	1082	methionine S-methyltransferase	98.29
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.28
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.27
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.25
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.23
PLN03075	296	nicotianamine synthase; Provisional	98.23
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.21
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.19
PRK05785	226	hypothetical protein; Provisional	98.18
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.17
KOG1271	227	consensus Methyltransferases [General function pre	98.17
PLN02336	475	phosphoethanolamine N-methyltransferase	98.17
PRK04266	226	fibrillarin; Provisional	98.17
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.15
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.15
PRK07402	196	precorrin-6B methylase; Provisional	98.14
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.14
PRK00811	283	spermidine synthase; Provisional	98.14
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.12
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.12
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.12
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.11
PHA03411	279	putative methyltransferase; Provisional	98.11
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.07
PRK03612	521	spermidine synthase; Provisional	98.04
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.01
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.0
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.0
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.99
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.98
PTZ00146	293	fibrillarin; Provisional	97.97
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.97
TIGR00438	188	rrmJ cell division protein FtsJ.	97.93
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.93
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.92
PRK06922	677	hypothetical protein; Provisional	97.92
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.91
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.9
PRK04457	262	spermidine synthase; Provisional	97.88
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.86
PRK06202	232	hypothetical protein; Provisional	97.84
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.82
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.82
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.81
PRK01581	374	speE spermidine synthase; Validated	97.81
PRK04148	134	hypothetical protein; Provisional	97.8
TIGR03438	301	probable methyltransferase. This model represents	97.8
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.79
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.77
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.77
PLN02476	278	O-methyltransferase	97.76
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.72
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.69
KOG4300	252	consensus Predicted methyltransferase [General fun	97.69
KOG2497	262	consensus Predicted methyltransferase [General fun	97.67
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.66
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.65
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.64
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.61
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.59
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.57
KOG3010	261	consensus Methyltransferase [General function pred	97.56
PHA03412	241	putative methyltransferase; Provisional	97.56
COG4122	219	Predicted O-methyltransferase [General function pr	97.55
PLN02366	308	spermidine synthase	97.54
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.51
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.51
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.49
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.47
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.45
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.42
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.41
KOG2904	328	consensus Predicted methyltransferase [General fun	97.36
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.25
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.08
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.05
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.95
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.92
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.88
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.87
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.82
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.78
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.78
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.77
KOG2899	288	consensus Predicted methyltransferase [General fun	96.75
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.68
PLN02823	336	spermine synthase	96.63
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.57
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.57
PRK00536	262	speE spermidine synthase; Provisional	96.56
PHA01634	156	hypothetical protein	96.48
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.45
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.4
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.3
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.06
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.02
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.88
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.81
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.72
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.62
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.46
KOG2361	264	consensus Predicted methyltransferase [General fun	95.45
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.41
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.32
PF13679	141	Methyltransf_32: Methyltransferase domain	94.9
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	94.87
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	94.75
KOG2940	325	consensus Predicted methyltransferase [General fun	94.72
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	94.63
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	94.6
COG2520	341	Predicted methyltransferase [General function pred	94.48
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.13
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	94.0
COG2521	287	Predicted archaeal methyltransferase [General func	93.98
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	93.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	93.69
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	93.26
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.19
COG2265	432	TrmA SAM-dependent methyltransferases related to t	93.18
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	93.14
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	93.0
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	92.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	92.78
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	92.77
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	92.49
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	92.39
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	92.1
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	92.1
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	92.07
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	91.8
PLN02232	160	ubiquinone biosynthesis methyltransferase	91.75
COG1041	347	Predicted DNA modification methylase [DNA replicat	91.61
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	91.01
COG4076	252	Predicted RNA methylase [General function predicti	91.0
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	90.67
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	90.63
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	90.41
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	87.78
KOG1501	636	consensus Arginine N-methyltransferase [General fu	87.75
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	87.31
COG4262	508	Predicted spermidine synthase with an N-terminal m	86.62
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	86.44
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	85.84
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	85.84
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	85.59
PRK10742	250	putative methyltransferase; Provisional	83.6
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	82.96
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	81.7
COG1568	354	Predicted methyltransferases [General function pre	81.55

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=7.7e-36  Score=283.32  Aligned_cols=271  Identities=38%  Similarity=0.520  Sum_probs=213.4

Q ss_pred             hhhhhhcCCCCCCCCCCcceeeeecCCCCCCCCcc--cccccccccccccc---cCceeeeccceeeccccchhhhcccc
Q 018716            5 SLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPA--VEILPSKVAHLYKY---AGDNVDLQAISMFKGKVSVADIIGFT   79 (351)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~e~l~~~~~~~~k~---~~~~v~~~g~~l~~g~~~~~~~~g~~   79 (351)
                      .+.+||++++.|-..+. ++.. .++...++|+|+  +|..+++.+..-+.   ..+...+...+|+++.++..+++++.
T Consensus         2 ~~~~~~~~d~~~~~~~~-~~~e-~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~f~~~~l~~g~~~l~~~~~~~~~i~~~~   79 (282)
T KOG2920|consen    2 VLTSQLFADLEPVGEGL-GFFE-SSEKFLPSPPPPHPVEHIRSKLTIGRKSSGFDIKLLLVGSHTLWKHLDSIEEIILLN   79 (282)
T ss_pred             cccccccCCCccccccc-cccc-ccccccCCCCCccccccchhhcccccccccchhhhhhhhHHHHhhcccccchhhccc
Confidence            56789999998855443 5555 677767777777  99999998765563   33455566678898999998888889


Q ss_pred             CCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHH
Q 018716           80 GSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVP  159 (351)
Q Consensus        80 ~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~  159 (351)
                      .+|+++++||||+|+|+++.+|+.++...+ ..+..+.+|||||||||+|++|++++..|+..++++|+|.++++..+.|
T Consensus        80 ~sDl~p~vyEGg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~p  158 (282)
T KOG2920|consen   80 HSDLVPGVYEGGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLP  158 (282)
T ss_pred             ccccCCceeecceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccc
Confidence            999999999999999999999999999886 4567899999999999999999999999988999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcc
Q 018716          160 NVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSI  239 (351)
Q Consensus       160 Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~  239 (351)
                      |+.+|.....                           .|.+...+...+.++                            
T Consensus       159 n~~~~~~~~~---------------------------~~~e~~~~~~i~~s~----------------------------  183 (282)
T KOG2920|consen  159 NILVNSHAGV---------------------------EEKENHKVDEILNSL----------------------------  183 (282)
T ss_pred             ceecchhhhh---------------------------hhhhcccceeccccc----------------------------
Confidence            9999987542                           133322211111110                            


Q ss_pred             cccCCcccccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchH
Q 018716          240 IGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAA  319 (351)
Q Consensus       240 i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~  319 (351)
                                  ++   +|. .+.  ....+||+|++||+||++..++.++...+.+|.+++|++|+|+|++||||||++
T Consensus       184 ------------l~---dg~-~~~--t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i  245 (282)
T KOG2920|consen  184 ------------LS---DGV-FNH--TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGI  245 (282)
T ss_pred             ------------cc---cch-hhh--ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhccCcCcch
Confidence                        00   121 000  112599999999999999999999866667787799999999999999999999


Q ss_pred             HHHH-HhhhhcC---ceeeEEeeecCCcceeeeecC
Q 018716          320 RHLR-SLVDEEG---IFGAHLIKEMTDRDIWKFFLK  351 (351)
Q Consensus       320 ~~F~-~~ve~~G---~~~~~~v~e~~d~~i~~~~~~  351 (351)
                      .+|. +.|.+..   .-+++++.+...|.||.+.+|
T Consensus       246 ~~f~~~~~~~~d~~~~~~~~~i~~~v~r~i~~~~~~  281 (282)
T KOG2920|consen  246 EEFNSKLMFDEDVFQISEAKLIRETVKRSILTIEFK  281 (282)
T ss_pred             hhhcccccccCCccccccceehhhcCceeEEEEEec
Confidence            9994 5555544   347778889999999999876

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.94  E-value=7.1e-27  Score=209.31  Aligned_cols=154  Identities=30%  Similarity=0.412  Sum_probs=97.9

Q ss_pred             CCcccchhHHHHHHHHhhhhhc--CCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716           90 GFLKCWESSIDLVNVLKHEIRD--GQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus        90 gG~k~Weas~~L~~~L~~~~~~--~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      .|.++|++++.|++||.+....  ....+++++|||||||+|++||++++. +..+|++||+++ +++. +..|+.+|..
T Consensus        16 ~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~-l~~Ni~~N~~   93 (173)
T PF10294_consen   16 TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLEL-LRRNIELNGS   93 (173)
T ss_dssp             -------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHH-HHHHHHTT--
T ss_pred             CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHH-HHHHHHhccc
Confidence            5778999999999999985311  234689999999999999999999987 777999999999 6643 3455555542


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716          167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  246 (351)
Q Consensus       167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~  246 (351)
                      .                   ...+|.+..+||++...  .                    ++                  
T Consensus        94 ~-------------------~~~~v~v~~L~Wg~~~~--~--------------------~~------------------  114 (173)
T PF10294_consen   94 L-------------------LDGRVSVRPLDWGDELD--S--------------------DL------------------  114 (173)
T ss_dssp             -------------------------EEEE--TTS-HH--H--------------------HH------------------
T ss_pred             c-------------------ccccccCcEEEecCccc--c--------------------cc------------------
Confidence            1                   13467888999987310  0                    00                  


Q ss_pred             cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhh
Q 018716          247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV  326 (351)
Q Consensus       247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~v  326 (351)
                                         ....+||+||||||+|+++.+++|+++|+++|+ ++|.+|+++++|+    ...++|++++
T Consensus       115 -------------------~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R~----~~~~~F~~~~  170 (173)
T PF10294_consen  115 -------------------LEPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRRR----KSEQEFFDRL  170 (173)
T ss_dssp             -------------------HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S-----TGGCHHHHHH
T ss_pred             -------------------cccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEec----HHHHHHHHHh
Confidence                               124689999999999999999999999999997 7777999999883    3578899998


Q ss_pred             hh
Q 018716          327 DE  328 (351)
Q Consensus       327 e~  328 (351)
                      ++
T Consensus       171 ~k  172 (173)
T PF10294_consen  171 KK  172 (173)
T ss_dssp             --
T ss_pred             hh
Confidence            76

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=5.1e-20  Score=162.76  Aligned_cols=170  Identities=26%  Similarity=0.378  Sum_probs=128.4

Q ss_pred             CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEccc-CCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716           89 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus        89 ~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcG-tGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      +|...+||+..+|+.++.+..    ..++|++|||||.| |||.|+.+|. ...+.|.+||.|++.+     .|++.-..
T Consensus         5 tgnvciwpseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-----rnv~ki~~   75 (201)
T KOG3201|consen    5 TGNVCIWPSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-----RNVEKIRN   75 (201)
T ss_pred             CCcEEecccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-----HHHHHHHh
Confidence            466789999999999999874    45899999999999 7999988774 4567899999999887     45554333


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716          167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  246 (351)
Q Consensus       167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~  246 (351)
                      .|..       +..        .+|.+  +.|..                                              
T Consensus        76 ~n~~-------s~~--------tsc~v--lrw~~----------------------------------------------   92 (201)
T KOG3201|consen   76 SNMA-------SSL--------TSCCV--LRWLI----------------------------------------------   92 (201)
T ss_pred             cccc-------ccc--------ceehh--hHHHH----------------------------------------------
Confidence            2210       111        12222  22211                                              


Q ss_pred             cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhh
Q 018716          247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV  326 (351)
Q Consensus       247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~v  326 (351)
                                 |+..  .......||+|++|||+|..+..++|+++|+.+|+ |.|.+++-+.||    |.+.++|.+.+
T Consensus        93 -----------~~aq--sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRR----g~sL~kF~de~  154 (201)
T KOG3201|consen   93 -----------WGAQ--SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRR----GQSLQKFLDEV  154 (201)
T ss_pred             -----------hhhH--HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcc----cchHHHHHHHH
Confidence                       1111  11245689999999999999999999999999997 889899888877    67899999999


Q ss_pred             hhcCceeeEEeeecCCcceeeeec
Q 018716          327 DEEGIFGAHLIKEMTDRDIWKFFL  350 (351)
Q Consensus       327 e~~G~~~~~~v~e~~d~~i~~~~~  350 (351)
                      +..| |.+.+ .+..|..||+++.
T Consensus       155 ~~~g-f~v~l-~enyde~iwqrh~  176 (201)
T KOG3201|consen  155 GTVG-FTVCL-EENYDEAIWQRHG  176 (201)
T ss_pred             Hhce-eEEEe-cccHhHHHHHHHH
Confidence            9999 46664 7778999998864

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.61  E-value=1.3e-15  Score=138.46  Aligned_cols=159  Identities=21%  Similarity=0.319  Sum_probs=113.3

Q ss_pred             CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716           86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus        86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      -.||  ...|.+++.|++|+..++    ...+||+|||+|+|.||++|++++.|++.|+.+|+.+...     .|+.+|.
T Consensus        54 Ppfw--a~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-----~ai~lNa  122 (218)
T COG3897          54 PPFW--AFAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-----QAIRLNA  122 (218)
T ss_pred             chHH--HHHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-----HHhhcch
Confidence            4566  448999999999999874    5689999999999999999999999999999999998654     7888888


Q ss_pred             HHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 018716          166 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS  245 (351)
Q Consensus       166 ~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~  245 (351)
                      .+|-                   -.+.+                              .+.|.           +     
T Consensus       123 ~ang-------------------v~i~~------------------------------~~~d~-----------~-----  137 (218)
T COG3897         123 AANG-------------------VSILF------------------------------THADL-----------I-----  137 (218)
T ss_pred             hhcc-------------------ceeEE------------------------------eeccc-----------c-----
Confidence            7541                   01111                              11111           1     


Q ss_pred             ccccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHh
Q 018716          246 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSL  325 (351)
Q Consensus       246 ~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~  325 (351)
                                          -....+|+||++|++|+.+....|+.++.+|..++..++..-..|.|...  ...+|+..
T Consensus       138 --------------------g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk--~~l~~~a~  195 (218)
T COG3897         138 --------------------GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPK--KRLEFLAI  195 (218)
T ss_pred             --------------------CCCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCch--hhhhhhhh
Confidence                                13578999999999999999999999988887644434433355666543  33444433


Q ss_pred             hhhcCceeeEEeeecCC-----cceeee
Q 018716          326 VDEEGIFGAHLIKEMTD-----RDIWKF  348 (351)
Q Consensus       326 ve~~G~~~~~~v~e~~d-----~~i~~~  348 (351)
                      -      ++....+..|     ..||.|
T Consensus       196 y------qvp~~~~~ed~~vkrttV~~~  217 (218)
T COG3897         196 Y------QVPMFRELEDAAVKRTTVWRF  217 (218)
T ss_pred             c------cCcccccccCcceeeeeeeec
Confidence            2      2333344433     667776

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.59  E-value=1.4e-14  Score=136.99  Aligned_cols=177  Identities=25%  Similarity=0.236  Sum_probs=118.7

Q ss_pred             cccchhHHHHHHHHhhhhhcC-----CCCCC--CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           92 LKCWESSIDLVNVLKHEIRDG-----QLSFR--GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        92 ~k~Weas~~L~~~L~~~~~~~-----~~~~~--~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.+|+++-.++.++.....+.     ...++  .++|||||+|||++|+.+++....+|+.||...-+. . +..|...|
T Consensus        54 ~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~-~-L~~~~~~~  131 (248)
T KOG2793|consen   54 AYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE-N-LKFNRDKN  131 (248)
T ss_pred             eEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH-H-HHHhhhhh
Confidence            579999999999998774311     11233  457999999999999999984445999999887442 2 23444333


Q ss_pred             HHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCC
Q 018716          165 LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS  244 (351)
Q Consensus       165 ~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~  244 (351)
                      ....                +++..+|.+..++|++.+..                 +     +           .    
T Consensus       132 ~~~l----------------~~~g~~v~v~~L~Wg~~~~~-----------------~-----~-----------~----  158 (248)
T KOG2793|consen  132 NIAL----------------NQLGGSVIVAILVWGNALDV-----------------S-----F-----------R----  158 (248)
T ss_pred             hhhh----------------hhcCCceeEEEEecCCcccH-----------------h-----h-----------c----
Confidence            3221                12344788889999986421                 0     0           0    


Q ss_pred             cccccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHH
Q 018716          245 SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRS  324 (351)
Q Consensus       245 ~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~  324 (351)
                                            ....+|+||+|||+|++++++.|+.+|..+|. .+++++++++.|.--   .-..+.-
T Consensus       159 ----------------------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~lr~~~---~~~~~~~  212 (248)
T KOG2793|consen  159 ----------------------LPNPFDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYPLRRDA---AWEIEVL  212 (248)
T ss_pred             ----------------------cCCcccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEecccch---HHHHHHH
Confidence                                  01118999999999999999999999999987 566999998776410   0111222


Q ss_pred             hhh-hcCceeeEEeeecCCcceeeee
Q 018716          325 LVD-EEGIFGAHLIKEMTDRDIWKFF  349 (351)
Q Consensus       325 ~ve-~~G~~~~~~v~e~~d~~i~~~~  349 (351)
                      .++ ..+.|.+......+|++-|..+
T Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~~~i~  238 (248)
T KOG2793|consen  213 LFKKDLKIFDVVQESFFKDQESFRIG  238 (248)
T ss_pred             HhhhhhccceeeeEeccCcceeeeee
Confidence            222 2455677777777777776654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.17  E-value=1.1e-09  Score=107.55  Aligned_cols=152  Identities=22%  Similarity=0.265  Sum_probs=102.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      -|.+.+.....+.+.     ..+.+++|||+|||+|..++.++..|+..|++.|.++.++..   .|...+...      
T Consensus       104 ew~s~~k~~~l~~~l-----~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q---~~a~~~~~~------  169 (322)
T PRK15068        104 EWRSDWKWDRVLPHL-----SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ---FEAVRKLLG------  169 (322)
T ss_pred             eehHHhHHHHHHHhh-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH---HHHHHHhcC------
Confidence            576654433332221     246889999999999999999888888789999999987632   222211110      


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   ...+++|..++.++.+                                                   
T Consensus       170 -------------~~~~i~~~~~d~e~lp---------------------------------------------------  185 (322)
T PRK15068        170 -------------NDQRAHLLPLGIEQLP---------------------------------------------------  185 (322)
T ss_pred             -------------CCCCeEEEeCCHHHCC---------------------------------------------------
Confidence                         0124666554432210                                                   


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe-------------ccccccc-----
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGF-----  315 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~-------------K~~yfgv-----  315 (351)
                                   ....||+|++..++|+......+++-+.++|+ |+|.+++..             ..+|...     
T Consensus       186 -------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~  251 (322)
T PRK15068        186 -------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYF  251 (322)
T ss_pred             -------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCcccee
Confidence                         14579999999999999999999999999997 899887642             1223221     


Q ss_pred             cchHHHHHHhhhhcCceeeEEe
Q 018716          316 NNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       316 ~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      -.+...+.+.+++.||-..+++
T Consensus       252 lps~~~l~~~L~~aGF~~i~~~  273 (322)
T PRK15068        252 IPSVPALKNWLERAGFKDVRIV  273 (322)
T ss_pred             CCCHHHHHHHHHHcCCceEEEE
Confidence            1267788999999997555554

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.13  E-value=2.5e-09  Score=95.52  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .++++|||+|||+|..++.++..+. +|+++|+++++++. +..|+.
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~   62 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE-LRENAK   62 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH-HHHHHH
Confidence            4668999999999999999988776 89999999999865 345554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.12  E-value=1.2e-09  Score=88.92  Aligned_cols=106  Identities=23%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ++.+|||||||+|..++.+++ ....+|++.|+++++++.     .+.|....                 ...+++++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~i~~~~   58 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI-----ARERAAEE-----------------GLSDRITFVQ   58 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH-----HHHHHHHT-----------------TTTTTEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCCCeEEEE
Confidence            578999999999999999997 234589999999999865     23333211                 1245788887


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+ ...                                                       |       ....+||+|+
T Consensus        59 ~d~-~~~-------------------------------------------------------~-------~~~~~~D~v~   75 (112)
T PF12847_consen   59 GDA-EFD-------------------------------------------------------P-------DFLEPFDLVI   75 (112)
T ss_dssp             SCC-HGG-------------------------------------------------------T-------TTSSCEEEEE
T ss_pred             Ccc-ccC-------------------------------------------------------c-------ccCCCCCEEE
Confidence            776 210                                                       0       1235699999


Q ss_pred             Eec-ccc--C-ccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTE-IPY--S-VTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asD-viY--~-~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      ... +..  . .+....+++.+.++|+ |+|++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~  111 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT  111 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            999 332  1 1345667888888897 899998864

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.11  E-value=4.5e-09  Score=93.55  Aligned_cols=60  Identities=25%  Similarity=0.436  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC-EEEEEcCChHHHHhhhHHHHHHH
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~-~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++..|++++...        ++++|||||||+|..|+.+++.+.. +|+++|+++.+++. +..|+..|
T Consensus        18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~-a~~n~~~n   78 (170)
T PF05175_consen   18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALEL-AKRNAERN   78 (170)
T ss_dssp             HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHH-HHHHHHhc
Confidence            4666888888754        6789999999999999999986654 79999999999854 34555544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00452 methyltransferase, putative

Probab=99.11  E-value=3.3e-09  Score=103.99  Aligned_cols=151  Identities=19%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .|.+.+....++.+.     ...++++|||+|||+|...+.++..|+..|++.|.++.|+...  ..++....       
T Consensus       103 e~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~-------  168 (314)
T TIGR00452       103 EWRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLD-------  168 (314)
T ss_pred             HHHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhc-------
Confidence            577665555555432     3478999999999999998888878887899999999887431  11111110       


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   ...++++..++.++.                                                    
T Consensus       169 -------------~~~~v~~~~~~ie~l----------------------------------------------------  183 (314)
T TIGR00452       169 -------------NDKRAILEPLGIEQL----------------------------------------------------  183 (314)
T ss_pred             -------------cCCCeEEEECCHHHC----------------------------------------------------
Confidence                         012344433222110                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEec--------------------cccc
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK--------------------KNYV  313 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K--------------------~~yf  313 (351)
                                  .....||+|++..++|+.......++.++++|+ |+|.+++..-                    ..||
T Consensus       184 ------------p~~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f  250 (314)
T TIGR00452       184 ------------HELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF  250 (314)
T ss_pred             ------------CCCCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhcccccc
Confidence                        012479999999999999999899999999997 8998886421                    0122


Q ss_pred             cccchHHHHHHhhhhcCceeeEEee
Q 018716          314 GFNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       314 gv~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                        ..+.......+++.||-.++++.
T Consensus       251 --lpS~~~L~~~L~~aGF~~V~i~~  273 (314)
T TIGR00452       251 --IPSVSALKNWLEKVGFENFRILD  273 (314)
T ss_pred             --CCCHHHHHHHHHHCCCeEEEEEe
Confidence              22567778889999986666543

Known examples to date are restricted to the proteobacteria.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.6e-09  Score=102.78  Aligned_cols=65  Identities=25%  Similarity=0.326  Sum_probs=54.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .-+......++|.+..      .++++|||+|||+|+++|++++.|+++|+++|++|..++- ++.|+.+|.
T Consensus       145 ~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~  209 (300)
T COG2264         145 THPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNG  209 (300)
T ss_pred             CChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcC
Confidence            4566666667776653      5899999999999999999999999999999999999864 678888884

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.01  E-value=6.9e-09  Score=100.90  Aligned_cols=65  Identities=26%  Similarity=0.302  Sum_probs=52.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .-+......++|.+.      ..++++|||+|||+|+++|+|++.|+++|++.|+++..++. ++.|+.+|.
T Consensus       144 ~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~-a~~N~~~N~  208 (295)
T PF06325_consen  144 HHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA-ARENAELNG  208 (295)
T ss_dssp             HCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH-HHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH-HHHHHHHcC
Confidence            467777777788766      36789999999999999999999999999999999988753 456666663

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.01  E-value=2.3e-08  Score=98.66  Aligned_cols=138  Identities=20%  Similarity=0.253  Sum_probs=94.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++++|||+|||+|..++.++.. |+ +|++.|+++.+++..     +.|....                 .+..++.|.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a-----~~~~~~~-----------------g~~~~v~~~  173 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARA-----NALAAAQ-----------------GLSDKVSFQ  173 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCCCceEEE
Confidence            46789999999999999888864 54 899999999988542     2222211                 122356666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ..++.||+|
T Consensus       174 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V  190 (340)
T PLN02244        174 VADALNQP---------------------------------------------------------------FEDGQFDLV  190 (340)
T ss_pred             EcCcccCC---------------------------------------------------------------CCCCCccEE
Confidence            55543211                                                               124689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc-------------------------ccccccchHHHHHHhhhhc
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------------------------NYVGFNNAARHLRSLVDEE  329 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~-------------------------~yfgv~gg~~~F~~~ve~~  329 (351)
                      ++.+++.+......+++-+.++|+ |+|.++++.-.                         +|+.......++.+.+++.
T Consensus       191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a  269 (340)
T PLN02244        191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL  269 (340)
T ss_pred             EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence            999999988888889999999997 89998885310                         1111112577889999999


Q ss_pred             CceeeEEeeecC
Q 018716          330 GIFGAHLIKEMT  341 (351)
Q Consensus       330 G~~~~~~v~e~~  341 (351)
                      |+-.++ +.+.+
T Consensus       270 Gf~~v~-~~d~s  280 (340)
T PLN02244        270 GLQDIK-TEDWS  280 (340)
T ss_pred             CCCeeE-eeeCc
Confidence            974443 34433

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.96  E-value=1.1e-08  Score=88.70  Aligned_cols=108  Identities=24%  Similarity=0.388  Sum_probs=80.2

Q ss_pred             CCCEEEEEcccCCHHHHHHH-HcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          117 RGKRVLELSCGYGLPGIFAC-LKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa-~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ++.+|||+|||+|..++.++ ..+ ..+|++.|++++|++..     +.+....                 .+. +++|.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a-----~~~~~~~-----------------~~~-ni~~~   59 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYA-----KKRAKEL-----------------GLD-NIEFI   59 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHH-----HHHHHHT-----------------TST-TEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHh-----hcccccc-----------------ccc-ccceE
Confidence            57899999999999999988 432 45899999999999653     2222111                 122 67887


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.+.+.                                                             . -..+||+|
T Consensus        60 ~~d~~~l~~-------------------------------------------------------------~-~~~~~D~I   77 (152)
T PF13847_consen   60 QGDIEDLPQ-------------------------------------------------------------E-LEEKFDII   77 (152)
T ss_dssp             ESBTTCGCG-------------------------------------------------------------C-SSTTEEEE
T ss_pred             Eeehhcccc-------------------------------------------------------------c-cCCCeeEE
Confidence            777654210                                                             0 01689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      +...++|.......+++-+.++|+ ++|++++..-.
T Consensus        78 ~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN  112 (152)
T ss_dssp             EEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence            999999999999999999999997 89999987644

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.96  E-value=3.7e-09  Score=103.96  Aligned_cols=106  Identities=20%  Similarity=0.308  Sum_probs=77.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      +++.+|||+|||+|..++.++..|+ +|++.|.++++++..     +.+....          +       ...++.+..
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~A-----r~~~~~~----------~-------~~~~i~~~~  186 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIA-----RLHADMD----------P-------VTSTIEYLC  186 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHHHhc----------C-------cccceeEEe
Confidence            5788999999999999998888775 899999999998542     1221100          0       011344433


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      ++-++.                                                               ....+.||+|+
T Consensus       187 ~dae~l---------------------------------------------------------------~~~~~~FD~Vi  203 (322)
T PLN02396        187 TTAEKL---------------------------------------------------------------ADEGRKFDAVL  203 (322)
T ss_pred             cCHHHh---------------------------------------------------------------hhccCCCCEEE
Confidence            221100                                                               01246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +.+++++....+.+++.+.++|+ |+|.++++.
T Consensus       204 ~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist  235 (322)
T PLN02396        204 SLEVIEHVANPAEFCKSLSALTI-PNGATVLST  235 (322)
T ss_pred             EhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEE
Confidence            99999999999999999999997 999999874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.95  E-value=1.9e-09  Score=101.36  Aligned_cols=126  Identities=25%  Similarity=0.353  Sum_probs=89.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .+.|++|||+|||.|+++.-+|+.|+ +|++.|.++.+++..        -..+       .++.           +   
T Consensus        57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~A--------k~ha-------~e~g-----------v---  106 (243)
T COG2227          57 DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVA--------KLHA-------LESG-----------V---  106 (243)
T ss_pred             CCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHH--------HHhh-------hhcc-----------c---
Confidence            37999999999999999999999996 899999999776431        1100       0010           1   


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      ..||.....                      +|+                                    ....++||+|
T Consensus       107 ~i~y~~~~~----------------------edl------------------------------------~~~~~~FDvV  128 (243)
T COG2227         107 NIDYRQATV----------------------EDL------------------------------------ASAGGQFDVV  128 (243)
T ss_pred             cccchhhhH----------------------HHH------------------------------------HhcCCCccEE
Confidence            122322100                      011                                    0123899999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccc---------------cccchHHHHHHhhhhc
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFNNAARHLRSLVDEE  329 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yf---------------gv~gg~~~F~~~ve~~  329 (351)
                      +..|++-+.+.-+.++..+.++++ |+|++++++-.+++               -+.+|+.++.++++..
T Consensus       129 ~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~  197 (243)
T COG2227         129 TCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPA  197 (243)
T ss_pred             EEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHH
Confidence            999999999999999999999997 89999999644432               2456778877777653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.93  E-value=3.5e-08  Score=95.21  Aligned_cols=64  Identities=22%  Similarity=0.283  Sum_probs=47.6

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..+......++|.+.      ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++. ++.|+..|
T Consensus       142 ~h~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~-a~~n~~~n  205 (288)
T TIGR00406       142 THPTTSLCLEWLEDL------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES-ARKNAELN  205 (288)
T ss_pred             CCHHHHHHHHHHHhh------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence            345554444555443      24789999999999999999988888899999999999864 34555444

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14967 putative methyltransferase; Provisional

Probab=98.91  E-value=4.2e-08  Score=90.82  Aligned_cols=54  Identities=33%  Similarity=0.426  Sum_probs=42.8

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+..|++++...     ...++.+|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus        21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~   74 (223)
T PRK14967         21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS   74 (223)
T ss_pred             cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            345677777543     124678999999999999999888776799999999998854

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.90  E-value=9.7e-08  Score=90.14  Aligned_cols=61  Identities=25%  Similarity=0.358  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .+....+.+.|...      ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++. ...|+.
T Consensus       103 h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~-A~~n~~  163 (250)
T PRK00517        103 HPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA-ARENAE  163 (250)
T ss_pred             CHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHH
Confidence            66666677777654      24789999999999999999888888789999999999854 234443

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.88  E-value=3.1e-09  Score=101.00  Aligned_cols=111  Identities=22%  Similarity=0.352  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      +.|++|||+|||+||++.-+|+.|+ +|++.|.+++|++-       +|....        ..|....  ...-++++..
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~v-------A~~h~~--------~dP~~~~--~~~y~l~~~~  149 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEV-------ANEHKK--------MDPVLEG--AIAYRLEYED  149 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHH-------HHHhhh--------cCchhcc--ccceeeehhh
Confidence            5679999999999999999999996 89999999988753       232211        1111100  0000111100


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      .+                                          +                      |  ...++||.|+
T Consensus       150 ~~------------------------------------------~----------------------E--~~~~~fDaVv  163 (282)
T KOG1270|consen  150 TD------------------------------------------V----------------------E--GLTGKFDAVV  163 (282)
T ss_pred             cc------------------------------------------h----------------------h--hcccccceee
Confidence            00                                          0                      0  1245699999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN  311 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~  311 (351)
                      ++|++-+....+.+++.+-++|+ |+|..++++-.+
T Consensus       164 csevleHV~dp~~~l~~l~~~lk-P~G~lfittinr  198 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR  198 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence            99999999999999999999997 899999986443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.86  E-value=7e-08  Score=87.27  Aligned_cols=40  Identities=20%  Similarity=0.466  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      +++++|||+|||+|..++.++..+ ..+|++.|.++.+++.
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~   81 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAF   81 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHH
Confidence            468999999999999999887643 4589999999998854

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.86  E-value=2.1e-08  Score=78.12  Aligned_cols=95  Identities=24%  Similarity=0.391  Sum_probs=67.4

Q ss_pred             EEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCC
Q 018716          122 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL  201 (351)
Q Consensus       122 LELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~  201 (351)
                      ||+|||+|.....++..+..+|+++|+++++++.     .+.+..                     ...+.+..+|....
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~---------------------~~~~~~~~~d~~~l   54 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLK---------------------NEGVSFRQGDAEDL   54 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTT---------------------TSTEEEEESBTTSS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhccc---------------------ccCchheeehHHhC
Confidence            8999999999999887755699999999998743     222211                     11233444433221


Q ss_pred             cchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEEecccc
Q 018716          202 PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPY  281 (351)
Q Consensus       202 ~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY  281 (351)
                      +                                                               ..++.||+|++..+++
T Consensus        55 ~---------------------------------------------------------------~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen   55 P---------------------------------------------------------------FPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             S---------------------------------------------------------------S-TT-EEEEEEESHGG
T ss_pred             c---------------------------------------------------------------ccccccccccccccee
Confidence            1                                                               1357899999999999


Q ss_pred             CccCHHHHHHHHHHHcCCCCeEEEE
Q 018716          282 SVTSLKKLYLLIKKCLRPPYGVVYL  306 (351)
Q Consensus       282 ~~~~~~~L~~~l~~~L~~p~gv~yl  306 (351)
                      .-+..+.+++-+.+.|+ |+|++++
T Consensus        72 ~~~~~~~~l~e~~rvLk-~gG~l~~   95 (95)
T PF08241_consen   72 HLEDPEAALREIYRVLK-PGGRLVI   95 (95)
T ss_dssp             GSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             eccCHHHHHHHHHHHcC-cCeEEeC
Confidence            99899999999999997 8999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.84  E-value=1.8e-07  Score=86.45  Aligned_cols=116  Identities=25%  Similarity=0.339  Sum_probs=79.8

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCC
Q 018716          101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL  180 (351)
Q Consensus       101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~  180 (351)
                      ..+++....    ...++++|||+|||+|..+..++..+. +|+++|.++.+++.     ...|....            
T Consensus        36 ~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~------------   93 (233)
T PRK05134         36 RLNYIREHA----GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV-----ARLHALES------------   93 (233)
T ss_pred             HHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHH-----HHHHHHHc------------
Confidence            345555543    235789999999999999988887765 79999999988743     23333211            


Q ss_pred             CCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhh
Q 018716          181 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWER  260 (351)
Q Consensus       181 ~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~  260 (351)
                             ...+.+...++...+                                                          
T Consensus        94 -------~~~~~~~~~~~~~~~----------------------------------------------------------  108 (233)
T PRK05134         94 -------GLKIDYRQTTAEELA----------------------------------------------------------  108 (233)
T ss_pred             -------CCceEEEecCHHHhh----------------------------------------------------------
Confidence                   002233222221100                                                          


Q ss_pred             ccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          261 ASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       261 ~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                        +  ...++||+|+++.++........+++.+.+.|+ |+|.++++.
T Consensus       109 --~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~  151 (233)
T PRK05134        109 --A--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFST  151 (233)
T ss_pred             --h--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEe
Confidence              0  123689999999999998888999999999997 899988863

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.84  E-value=1.6e-07  Score=85.64  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ++.+|||+|||+|..++.++. ....+|++.|.++++++.. ..|+..|.                     ++ ++++..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A-~~~~~~~~---------------------l~-~i~~~~  101 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFL-REVAAELG---------------------LK-NVTVVH  101 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHH-HHHHHHcC---------------------CC-CEEEEe
Confidence            388999999999999998775 3446899999999998653 33333321                     11 255544


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|-.+.                                                                .....||+|+
T Consensus       102 ~d~~~~----------------------------------------------------------------~~~~~fDlV~  117 (187)
T PRK00107        102 GRAEEF----------------------------------------------------------------GQEEKFDVVT  117 (187)
T ss_pred             ccHhhC----------------------------------------------------------------CCCCCccEEE
Confidence            332110                                                                0135799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc-eeeEEeeecC
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI-FGAHLIKEMT  341 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~-~~~~~v~e~~  341 (351)
                      +..    -..++.+++.+.++|+ |+|++++.....      ...++.+..+..|+ +...++.+++
T Consensus       118 ~~~----~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~  173 (187)
T PRK00107        118 SRA----VASLSDLVELCLPLLK-PGGRFLALKGRD------PEEEIAELPKALGGKVEEVIELTLP  173 (187)
T ss_pred             Ecc----ccCHHHHHHHHHHhcC-CCeEEEEEeCCC------hHHHHHHHHHhcCceEeeeEEEecC
Confidence            864    2457788888888997 899988775433      34566666666776 3344444443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.84  E-value=7.6e-08  Score=91.32  Aligned_cols=134  Identities=23%  Similarity=0.349  Sum_probs=90.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCC-CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga-~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      -++.+|||+|||+|..++.++. .|. .+|+++|+++.+++..     +.|....                 .. .++.+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A-----~~~~~~~-----------------g~-~~v~~  132 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKA-----RANARKA-----------------GY-TNVEF  132 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHH-----HHHHHHc-----------------CC-CCEEE
Confidence            3688999999999998877664 354 4799999999998652     3333211                 01 14555


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.+                                                               ...+.||+
T Consensus       133 ~~~d~~~l~---------------------------------------------------------------~~~~~fD~  149 (272)
T PRK11873        133 RLGEIEALP---------------------------------------------------------------VADNSVDV  149 (272)
T ss_pred             EEcchhhCC---------------------------------------------------------------CCCCceeE
Confidence            555543211                                                               12357999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe---cc-----------ccccc---cchHHHHHHhhhhcCceeeEE
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KK-----------NYVGF---NNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~---K~-----------~yfgv---~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      |+..-+++.....+.+++.+.++|+ |+|++++..   ..           .+.+.   .-...++.+.+++.|+-..++
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i  228 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI  228 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence            9998888877788888999999997 899988852   11           11111   114678999999999765554

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.82  E-value=1.3e-07  Score=86.74  Aligned_cols=128  Identities=19%  Similarity=0.195  Sum_probs=86.9

Q ss_pred             CEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 018716          119 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD  197 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gd  197 (351)
                      ++|||+|||+|...+.++.. +..+|++.|+++++++.     .+.|....                 .+..++++..+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~-----a~~~~~~~-----------------gl~~~i~~~~~d   58 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEV-----GRERIRAL-----------------GLQGRIRIFYRD   58 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEecc
Confidence            58999999999988887754 33589999999988743     33333211                 122345554443


Q ss_pred             CCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEEe
Q 018716          198 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT  277 (351)
Q Consensus       198 W~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILas  277 (351)
                      ....                                                                ...+.||+|++.
T Consensus        59 ~~~~----------------------------------------------------------------~~~~~fD~I~~~   74 (224)
T smart00828       59 SAKD----------------------------------------------------------------PFPDTYDLVFGF   74 (224)
T ss_pred             cccC----------------------------------------------------------------CCCCCCCEeehH
Confidence            3210                                                                012479999999


Q ss_pred             ccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc--cccc--------cchHHHHHHhhhhcCcee
Q 018716          278 EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--YVGF--------NNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       278 DviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~--yfgv--------~gg~~~F~~~ve~~G~~~  333 (351)
                      +++++....+.+++.+.++|+ |+|.+++..-..  +-..        ..+..++.+.+++.|+-.
T Consensus        75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~  139 (224)
T smart00828       75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV  139 (224)
T ss_pred             HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence            999998889999999999997 899988863210  0000        124677888999998633

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.82  E-value=5.7e-08  Score=88.54  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++..|. +|++.|+|+.+++.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~   67 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIAN   67 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4678999999999999999998875 89999999999854

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.81  E-value=3.5e-08  Score=93.02  Aligned_cols=105  Identities=27%  Similarity=0.287  Sum_probs=75.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..++.++..|. +|+++|++++|++..     +.|....                 .+..++++..+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a-----~~~~~~~-----------------g~~~~v~~~~~  100 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRA-----KQAAEAK-----------------GVSDNMQFIHC  100 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCccceEEEEc
Confidence            567999999999999999888775 899999999998642     3333211                 01234555544


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+.+                                                              ....+.||+|++
T Consensus       101 d~~~l~--------------------------------------------------------------~~~~~~fD~V~~  118 (255)
T PRK11036        101 AAQDIA--------------------------------------------------------------QHLETPVDLILF  118 (255)
T ss_pred             CHHHHh--------------------------------------------------------------hhcCCCCCEEEe
Confidence            432210                                                              012467999999


Q ss_pred             eccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ..+++.......+++.+.++|+ |+|++.+.
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~  148 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLR-PGGALSLM  148 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcC-CCeEEEEE
Confidence            9999988778888899999997 89988765

>PRK14968 putative methyltransferase; Provisional

Probab=98.81  E-value=5.7e-07  Score=79.58  Aligned_cols=59  Identities=29%  Similarity=0.334  Sum_probs=44.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      -++-+..|++++..        .++++|||+|||+|..++.++..+ .+|+++|+++++++. ...|+.
T Consensus         8 p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~-a~~~~~   66 (188)
T PRK14968          8 PAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVEC-AKCNAK   66 (188)
T ss_pred             cchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHH-HHHHHH
Confidence            35666677776642        477899999999999999888775 589999999999854 234443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.78  E-value=2e-07  Score=83.81  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++..+ ..+|++.|.++.+++. ...|+..|.                     + .++++.
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~-a~~n~~~~~---------------------~-~~i~~~   86 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRL-IKENRQRFG---------------------C-GNIDII   86 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------C-CCeEEE
Confidence            367899999999999999988643 3589999999998854 233443321                     1 134443


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|...                                                                 .....||+|
T Consensus        87 ~~d~~~-----------------------------------------------------------------~~~~~~D~v  101 (187)
T PRK08287         87 PGEAPI-----------------------------------------------------------------ELPGKADAI  101 (187)
T ss_pred             ecCchh-----------------------------------------------------------------hcCcCCCEE
Confidence            332100                                                                 012468999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCce
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~  332 (351)
                      +++-..   ..++.+++.+.++|+ |+|++++..-.     .....++.+.+++.|+-
T Consensus       102 ~~~~~~---~~~~~~l~~~~~~Lk-~gG~lv~~~~~-----~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287        102 FIGGSG---GNLTAIIDWSLAHLH-PGGRLVLTFIL-----LENLHSALAHLEKCGVS  150 (187)
T ss_pred             EECCCc---cCHHHHHHHHHHhcC-CCeEEEEEEec-----HhhHHHHHHHHHHCCCC
Confidence            986432   346778888888897 89998775321     23467888899998863

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.77  E-value=1.1e-07  Score=96.03  Aligned_cols=126  Identities=22%  Similarity=0.274  Sum_probs=87.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCC-Cceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~-~~v~~~  194 (351)
                      .++++|||+|||||..++.++..|+.+|++.|.++.+++. ...|+.+|..                     . .++++.
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~-a~~N~~~Ngl---------------------~~~~v~~i  276 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-ARQNVELNKL---------------------DLSKAEFV  276 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHcCC---------------------CCCcEEEE
Confidence            4689999999999999998887788899999999999965 4566666631                     1 246666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|.-+.   +.                                                  .+.      ....+||+|
T Consensus       277 ~~D~~~~---l~--------------------------------------------------~~~------~~~~~fDlV  297 (396)
T PRK15128        277 RDDVFKL---LR--------------------------------------------------TYR------DRGEKFDVI  297 (396)
T ss_pred             EccHHHH---HH--------------------------------------------------HHH------hcCCCCCEE
Confidence            6654221   00                                                  000      123579999


Q ss_pred             EEeccccCccC----------HHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhh
Q 018716          275 LLTEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE  328 (351)
Q Consensus       275 LasDviY~~~~----------~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~  328 (351)
                      + .|-.|....          +..+.....++|+ |+|+++.++-.++.    +...|++.+.+
T Consensus       298 i-lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~----~~~~f~~~v~~  355 (396)
T PRK15128        298 V-MDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLM----TSDLFQKIIAD  355 (396)
T ss_pred             E-ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcC----CHHHHHHHHHH
Confidence            8 788876654          4445555567786 89998887655443    46888888865

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.75  E-value=1e-07  Score=86.71  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~   67 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIAS   67 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            3567999999999999999998875 89999999998854

Part of a tellurite-reducing operon tehA and tehB

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.74  E-value=6.1e-08  Score=83.05  Aligned_cols=64  Identities=16%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc-----------cccc-------chHHHHHHhhhh
Q 018716          267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VGFN-------NAARHLRSLVDE  328 (351)
Q Consensus       267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y-----------fgv~-------gg~~~F~~~ve~  328 (351)
                      ..+.||+|++.+++++......+++.|.++|+ |+|.+++..-.++           +...       -...++.+++++
T Consensus        75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  153 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQ  153 (161)
T ss_dssp             HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred             cccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence            35799999999999999999999999999997 8999998753321           1110       145677777777


Q ss_pred             cCc
Q 018716          329 EGI  331 (351)
Q Consensus       329 ~G~  331 (351)
                      .|+
T Consensus       154 ~G~  156 (161)
T PF13489_consen  154 AGF  156 (161)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            775

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.73  E-value=1.7e-07  Score=87.88  Aligned_cols=99  Identities=25%  Similarity=0.324  Sum_probs=71.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..+..++..|. +|++.|+++.|++..     +.|.                       ..+.+..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a-----~~~~-----------------------~~~~~~~~   92 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQA-----RQKD-----------------------AADHYLAG   92 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCCEEEc
Confidence            568999999999998887777664 899999999988542     1110                       01223334


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |.+..+                                                               .....||+|++
T Consensus        93 d~~~~~---------------------------------------------------------------~~~~~fD~V~s  109 (251)
T PRK10258         93 DIESLP---------------------------------------------------------------LATATFDLAWS  109 (251)
T ss_pred             CcccCc---------------------------------------------------------------CCCCcEEEEEE
Confidence            432211                                                               12457999999


Q ss_pred             eccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +-++........++.-+.++|+ |+|.++++.
T Consensus       110 ~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWCGNLSTALRELYRVVR-PGGVVAFTT  140 (251)
T ss_pred             CchhhhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence            9988877788888888888997 899998874

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.72  E-value=5.2e-07  Score=82.55  Aligned_cols=105  Identities=26%  Similarity=0.351  Sum_probs=74.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ++.+|||+|||+|..++.++..+  ..+|+++|+++.+++.     .+.|...+                 .+...+.+.
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~-----------------~~~~~~~~~  108 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV-----GREKLRDL-----------------GLSGNVEFV  108 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH-----HHHhhccc-----------------ccccCeEEE
Confidence            67899999999999998888655  3689999999988753     33333210                 011234444


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ...+.||+|
T Consensus       109 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I  125 (239)
T PRK00216        109 QGDAEALP---------------------------------------------------------------FPDNSFDAV  125 (239)
T ss_pred             ecccccCC---------------------------------------------------------------CCCCCccEE
Confidence            44332210                                                               123579999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +.+-++.+....+.+++.+.++|+ |+|++++.
T Consensus       126 ~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~  157 (239)
T PRK00216        126 TIAFGLRNVPDIDKALREMYRVLK-PGGRLVIL  157 (239)
T ss_pred             EEecccccCCCHHHHHHHHHHhcc-CCcEEEEE
Confidence            999998888889999999999997 88987764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.71  E-value=1.3e-07  Score=90.93  Aligned_cols=39  Identities=23%  Similarity=0.512  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++..|. +|++.|+|+.+++.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~  157 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLEN  157 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            3556999999999999999998875 89999999999854

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.70  E-value=4.9e-07  Score=91.76  Aligned_cols=58  Identities=21%  Similarity=0.280  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHH
Q 018716           98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus        98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ...|++.+...+      .++.+|||+|||+|..++.++. ....+|+++|+|+.+++. .+.|+.
T Consensus       238 TE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~-AreNa~  296 (423)
T PRK14966        238 TEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET-ARKNAA  296 (423)
T ss_pred             HHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHH
Confidence            346677666542      2456999999999999998775 345689999999999965 344444

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.70  E-value=7e-07  Score=91.37  Aligned_cols=135  Identities=21%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      -++.+|||+|||+|..++.++.....+|++.|+++.+++..     +.|...                   ...++.|..
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A-----~~~~~~-------------------~~~~v~~~~  320 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA-----LERAIG-------------------RKCSVEFEV  320 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH-----HHHhhc-------------------CCCceEEEE
Confidence            35789999999999998887753224899999999988542     222210                   122466666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+...+                                                               ...+.||+|+
T Consensus       321 ~d~~~~~---------------------------------------------------------------~~~~~fD~I~  337 (475)
T PLN02336        321 ADCTKKT---------------------------------------------------------------YPDNSFDVIY  337 (475)
T ss_pred             cCcccCC---------------------------------------------------------------CCCCCEEEEE
Confidence            6554311                                                               1235799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc-----------cc---c-ccchHHHHHHhhhhcCceeeEEeee
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YV---G-FNNAARHLRSLVDEEGIFGAHLIKE  339 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~-----------yf---g-v~gg~~~F~~~ve~~G~~~~~~v~e  339 (351)
                      +.+++++....+.+++-+.+.|+ |+|.+++.....           ++   | .-....++.+.+++.|+ ....+.+
T Consensus       338 s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF-~~i~~~d  414 (475)
T PLN02336        338 SRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGF-DDVIAED  414 (475)
T ss_pred             ECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCC-eeeeeec
Confidence            99999999999999999999997 899988863110           00   0 01246777888888886 3333343

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.69  E-value=3.2e-07  Score=83.95  Aligned_cols=128  Identities=23%  Similarity=0.341  Sum_probs=87.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .|........++.+.+........+.+|||+|||+|..+..++..+. +|+++|.++.+++.     .+.|...+.    
T Consensus        22 ~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~~----   91 (224)
T TIGR01983        22 LHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEV-----AKLHAKKDP----   91 (224)
T ss_pred             HHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHH-----HHHHHHHcC----
Confidence            45555566677777764332235688999999999999888877765 69999999988743     333433110    


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   . .++++...|..+.                                                    
T Consensus        92 -------------~-~~~~~~~~d~~~~----------------------------------------------------  105 (224)
T TIGR01983        92 -------------L-LKIEYRCTSVEDL----------------------------------------------------  105 (224)
T ss_pred             -------------C-CceEEEeCCHHHh----------------------------------------------------
Confidence                         0 0233332222110                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                           .   .  ....+||+|++..+++.......+++.+.+.|+ ++|+++++.
T Consensus       106 -----~---~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~  149 (224)
T TIGR01983       106 -----A---E--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFST  149 (224)
T ss_pred             -----h---c--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence                 0   0  013689999999999999999999999999997 889888764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.68  E-value=8.9e-07  Score=82.13  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=43.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      -++.+..+.+.+.+.+.     ..+++|||+|||+|..++.++.. ...+++++|+++.+++.
T Consensus        69 p~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~  126 (251)
T TIGR03534        69 PRPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV  126 (251)
T ss_pred             CCCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            34555667777766531     24579999999999999988864 34589999999999864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.68  E-value=7.6e-07  Score=86.73  Aligned_cols=155  Identities=21%  Similarity=0.272  Sum_probs=103.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      -|.+..---+..-+.     ..++||+|||+|||.|..+..++..|++.|+++|-++..+.+   -.+..+...      
T Consensus        97 EWrSd~KW~rl~p~l-----~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q---F~~i~~~lg------  162 (315)
T PF08003_consen   97 EWRSDWKWDRLLPHL-----PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ---FEAIKHFLG------  162 (315)
T ss_pred             cccccchHHHHHhhh-----CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH---HHHHHHHhC------
Confidence            466654333322221     368999999999999999999999999999999998865432   122222210      


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   ....+.+..+-.+                                                      
T Consensus       163 -------------~~~~~~~lplgvE------------------------------------------------------  175 (315)
T PF08003_consen  163 -------------QDPPVFELPLGVE------------------------------------------------------  175 (315)
T ss_pred             -------------CCccEEEcCcchh------------------------------------------------------
Confidence                         0111222111000                                                      


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEE-------------Eeccccccccc---
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL-------------ATKKNYVGFNN---  317 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~yl-------------A~K~~yfgv~g---  317 (351)
                                .....+.||+|++.=|+|+..+--..++.|+.+|+ ++|..++             .-+.+|-...+   
T Consensus       176 ----------~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F  244 (315)
T PF08003_consen  176 ----------DLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF  244 (315)
T ss_pred             ----------hccccCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence                      00125689999999999999998888888998897 7775442             22444544433   


Q ss_pred             --hHHHHHHhhhhcCceeeEEeeec
Q 018716          318 --AARHLRSLVDEEGIFGAHLIKEM  340 (351)
Q Consensus       318 --g~~~F~~~ve~~G~~~~~~v~e~  340 (351)
                        ++......+++.||-.+++|...
T Consensus       245 iPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  245 IPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             eCCHHHHHHHHHHcCCceEEEecCc
Confidence              78889999999999999988754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.67  E-value=2.9e-07  Score=92.49  Aligned_cols=46  Identities=28%  Similarity=0.407  Sum_probs=37.7

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          118 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.+|||||||+|..|+.++..+ ..+|+++|.|+.+++. .+.|+..|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~-A~~N~~~n  275 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-SRLNVETN  275 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            4699999999999999988753 4589999999999865 45666655

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.67  E-value=2.4e-07  Score=85.30  Aligned_cols=108  Identities=14%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..+.+|||||||+|..|+.++..++.+|++.|.++.+++. ...|++.|.                     + .++.++.
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~-a~~Nl~~~~---------------------~-~~v~~~~  108 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ-LIKNLATLK---------------------A-GNARVVN  108 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------C-CcEEEEE
Confidence            4678999999999999997665567799999999998864 345555442                     1 1356655


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.                                                        +.      .....||+|+
T Consensus       109 ~D~~~~--------------------------------------------------------l~------~~~~~fDlV~  126 (199)
T PRK10909        109 TNALSF--------------------------------------------------------LA------QPGTPHNVVF  126 (199)
T ss_pred             chHHHH--------------------------------------------------------Hh------hcCCCceEEE
Confidence            554210                                                        00      0123589886


Q ss_pred             EeccccCccCHHHHHHHHHHH--cCCCCeEEEEEecc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKK  310 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~--L~~p~gv~ylA~K~  310 (351)
                       .|-.|.....+.+++.|...  |. |++++|+-+-+
T Consensus       127 -~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~~  161 (199)
T PRK10909        127 -VDPPFRKGLLEETINLLEDNGWLA-DEALIYVESEV  161 (199)
T ss_pred             -ECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEecC
Confidence             78899998899998988873  55 89999998644

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.66  E-value=1.2e-06  Score=87.05  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++. .+..+|+++|.+++|++..     +.|..                     ..++++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A-----~~k~~---------------------~~~i~~i  165 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-----KQKEP---------------------LKECKII  165 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhhh---------------------ccCCeEE
Confidence            3578999999999998887765 3445899999999988542     22211                     0123443


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ...+.||+|
T Consensus       166 ~gD~e~lp---------------------------------------------------------------~~~~sFDvV  182 (340)
T PLN02490        166 EGDAEDLP---------------------------------------------------------------FPTDYADRY  182 (340)
T ss_pred             eccHHhCC---------------------------------------------------------------CCCCceeEE
Confidence            33332210                                                               124579999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc-------cccc----ccchHHHHHHhhhhcCceeeEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG----FNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~-------~yfg----v~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +++.++..-...+.+++-+.+.|+ |+|++++....       +++.    ......++.+.+++.|+-.+++
T Consensus       183 Is~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        183 VSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             EEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            999999877777888888999997 88988765211       1110    0125688889999999755543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.66  E-value=8.3e-07  Score=87.18  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..|. +|++.|+++.|++.
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~  181 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAE  181 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4688999999999999999998875 89999999999864

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.64  E-value=4.3e-07  Score=86.54  Aligned_cols=128  Identities=19%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|.....++. .+. +|++.|+++.+++..     +.+..                    ...++.+.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a-----~~~~~--------------------~~~~i~~~  104 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIA-----KLRNS--------------------DKNKIEFE  104 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHH-----HHHcC--------------------cCCceEEE
Confidence            4778999999999998887765 343 899999999987532     11110                    01235554


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.                                                               ....+.||+|
T Consensus       105 ~~D~~~~---------------------------------------------------------------~~~~~~FD~V  121 (263)
T PTZ00098        105 ANDILKK---------------------------------------------------------------DFPENTFDMI  121 (263)
T ss_pred             ECCcccC---------------------------------------------------------------CCCCCCeEEE
Confidence            4433210                                                               0124689999


Q ss_pred             EEeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEec--c---------------ccccccchHHHHHHhhhhcCceee
Q 018716          275 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK--K---------------NYVGFNNAARHLRSLVDEEGIFGA  334 (351)
Q Consensus       275 LasDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K--~---------------~yfgv~gg~~~F~~~ve~~G~~~~  334 (351)
                      ++.+++++..  ....+++-+.++|+ |+|.+++.--  .               +.+. .....++.+.+++.|+-.+
T Consensus       122 ~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGF~~v  198 (263)
T PTZ00098        122 YSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYT-LIPIQEYGDLIKSCNFQNV  198 (263)
T ss_pred             EEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCC-CCCHHHHHHHHHHCCCCee
Confidence            9999987653  67788888889997 8999887621  0               0000 1245678888888887433

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.64  E-value=4.2e-07  Score=82.90  Aligned_cols=102  Identities=24%  Similarity=0.340  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ..+++|||+|||+|..+..++..+ ..+|+++|.++.+++..     ..+.                      .+++.+.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~~----------------------~~~~~~~   85 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTKL----------------------SENVQFI   85 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHhc----------------------CCCCeEE
Confidence            456899999999999998887654 34699999999887431     1110                      1134444


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|....+                                                               .....||+|
T Consensus        86 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v  102 (240)
T TIGR02072        86 CGDAEKLP---------------------------------------------------------------LEDSSFDLI  102 (240)
T ss_pred             ecchhhCC---------------------------------------------------------------CCCCceeEE
Confidence            44332210                                                               123579999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +++.++........+++-+.+.|+ |+|.++++.
T Consensus       103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~  135 (240)
T TIGR02072       103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFST  135 (240)
T ss_pred             EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence            999999988888899999999997 899998863

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.64  E-value=4.3e-07  Score=87.46  Aligned_cols=117  Identities=25%  Similarity=0.373  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      ++.....+++.+..    ..-+|.+|||||||.|-+.+.++.. |+ +|++..+|++-.+.     ++.....       
T Consensus        45 ~AQ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~-----a~~~~~~-------  107 (273)
T PF02353_consen   45 EAQERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEY-----ARERIRE-------  107 (273)
T ss_dssp             HHHHHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHH-----HHHHHHC-------
T ss_pred             HHHHHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHH-----HHHHHHh-------
Confidence            33445555665552    3458999999999999999999975 76 89999999976643     2222210       


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                                ..+..+|.+...||.+                                                      
T Consensus       108 ----------~gl~~~v~v~~~D~~~------------------------------------------------------  123 (273)
T PF02353_consen  108 ----------AGLEDRVEVRLQDYRD------------------------------------------------------  123 (273)
T ss_dssp             ----------STSSSTEEEEES-GGG------------------------------------------------------
T ss_pred             ----------cCCCCceEEEEeeccc------------------------------------------------------
Confidence                      0133355554444322                                                      


Q ss_pred             chhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEE
Q 018716          255 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYL  306 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~yl  306 (351)
                                  ...+||-|++-+.+-+.  ..++.+++.+.++|+ |+|++++
T Consensus       124 ------------~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~l  164 (273)
T PF02353_consen  124 ------------LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVL  164 (273)
T ss_dssp             ---------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEE
T ss_pred             ------------cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEE
Confidence                        12389999999999987  789999999999997 9999885

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.63  E-value=2.5e-07  Score=99.65  Aligned_cols=48  Identities=27%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++++|||||||||..++.++..|+.+|++.|+|+.+++. .+.|+.+|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~-a~~N~~~n  584 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW-AERNFALN  584 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            4689999999999999999999888889999999999965 46777666

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.62  E-value=4.2e-07  Score=83.80  Aligned_cols=105  Identities=21%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..+..++.. + ..+|++.|+++.+++.. ..|+..+.                     + +++.+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a-~~~~~~~~---------------------~-~~v~~  100 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG-RQKVKDAG---------------------L-HNVEL  100 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHhcC---------------------C-CceEE
Confidence            36789999999999999887753 3 34899999999998542 23322110                     1 23555


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|....+                                                               .....||+
T Consensus       101 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~  117 (231)
T TIGR02752       101 VHGNAMELP---------------------------------------------------------------FDDNSFDY  117 (231)
T ss_pred             EEechhcCC---------------------------------------------------------------CCCCCccE
Confidence            444322110                                                               12457999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      |+++.++-..+....+++.+.++|+ |+|.+++.
T Consensus       118 V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~  150 (231)
T TIGR02752       118 VTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCL  150 (231)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence            9999887777777788888888897 89988764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.62  E-value=2.9e-07  Score=84.32  Aligned_cols=125  Identities=19%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .+.+|||+|||+|..++.++.. ...+|++.|+++.+++.+     ..|...+                 .+ .++++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a-----~~~~~~~-----------------~~-~~v~~~~   96 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKA-----LKKIEEE-----------------GL-TNLRLLC   96 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHH-----HHHHHHc-----------------CC-CCEEEEe
Confidence            5679999999999999887753 345899999999998653     3333221                 01 2466666


Q ss_pred             ccC-CCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          196 GDW-EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       196 gdW-~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      +|+ +..+.                                                             ......||+|
T Consensus        97 ~d~~~~l~~-------------------------------------------------------------~~~~~~~D~V  115 (202)
T PRK00121         97 GDAVEVLLD-------------------------------------------------------------MFPDGSLDRI  115 (202)
T ss_pred             cCHHHHHHH-------------------------------------------------------------HcCccccceE
Confidence            665 32110                                                             0123457777


Q ss_pred             EEeccc-cCc-------cCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          275 LLTEIP-YSV-------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       275 LasDvi-Y~~-------~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      +..-.. +..       ...+.+++-+.++|+ |+|++++++-...     -....++.+++.|+
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~-----~~~~~~~~~~~~g~  174 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG-----YAEYMLEVLSAEGG  174 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH-----HHHHHHHHHHhCcc
Confidence            764211 110       124678888898997 8999999864332     35677888888885

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.61  E-value=6.5e-07  Score=85.25  Aligned_cols=108  Identities=25%  Similarity=0.329  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||||...+.++.. + ..+|++.|++++|++.. ..+.  +....                 ....++++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A-~~r~--~~~~~-----------------~~~~~i~~  131 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVA-ASRQ--ELKAK-----------------SCYKNIEW  131 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHh--hhhhh-----------------ccCCCeEE
Confidence            46789999999999988877753 4 24899999999999642 1111  11000                 01124555


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.+                                                               ..++.||+
T Consensus       132 ~~~d~~~lp---------------------------------------------------------------~~~~sfD~  148 (261)
T PLN02233        132 IEGDATDLP---------------------------------------------------------------FDDCYFDA  148 (261)
T ss_pred             EEcccccCC---------------------------------------------------------------CCCCCEeE
Confidence            544432211                                                               12467999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      |+++.++-+......+++-+.+.|+ |+|.+++.
T Consensus       149 V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~  181 (261)
T PLN02233        149 ITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSIL  181 (261)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcC-cCcEEEEE
Confidence            9999999888888888888999997 89988775

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.61  E-value=7.8e-07  Score=83.54  Aligned_cols=99  Identities=21%  Similarity=0.291  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..+..++.. +..+|+++|+++.|++..     +.|.                       +++.+.
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~-----------------------~~~~~~   81 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRL-----------------------PDCQFV   81 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhC-----------------------CCCeEE
Confidence            46789999999999999887753 345899999999988542     1111                       123333


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|-.+                                                         |       .....||+|
T Consensus        82 ~~d~~~---------------------------------------------------------~-------~~~~~fD~v   97 (258)
T PRK01683         82 EADIAS---------------------------------------------------------W-------QPPQALDLI   97 (258)
T ss_pred             ECchhc---------------------------------------------------------c-------CCCCCccEE
Confidence            222100                                                         1       013489999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +++.++........+++-+.++|+ |+|++.+.
T Consensus        98 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~  129 (258)
T PRK01683         98 FANASLQWLPDHLELFPRLVSLLA-PGGVLAVQ  129 (258)
T ss_pred             EEccChhhCCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            999999877778888888999997 89988875

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.59  E-value=3.6e-06  Score=79.43  Aligned_cols=59  Identities=24%  Similarity=0.232  Sum_probs=42.3

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ..|++.+....    ...++.+|||+|||+|..++.++... ..+|+++|+++.+++. ...|+.
T Consensus        94 e~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~-a~~n~~  153 (275)
T PRK09328         94 EELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAV-ARRNAK  153 (275)
T ss_pred             HHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHH
Confidence            45666555331    22467899999999999999888643 4689999999999854 334443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.59  E-value=1.8e-06  Score=78.46  Aligned_cols=130  Identities=18%  Similarity=0.236  Sum_probs=83.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  192 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~  192 (351)
                      ..++.+|||+|||+|..++.+++. + ..+|++.|.++.+++. .+.|+..|.                     +..++.
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~-a~~n~~~~g---------------------~~~~v~   95 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINL-TRRNAEKFG---------------------VLNNIV   95 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------CCCCeE
Confidence            357899999999999999988753 3 3589999999999864 344544331                     112355


Q ss_pred             eeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCcc
Q 018716          193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  272 (351)
Q Consensus       193 ~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~D  272 (351)
                      +..+|..+.   +                                                         +  .....||
T Consensus        96 ~~~~d~~~~---l---------------------------------------------------------~--~~~~~~D  113 (198)
T PRK00377         96 LIKGEAPEI---L---------------------------------------------------------F--TINEKFD  113 (198)
T ss_pred             EEEechhhh---H---------------------------------------------------------h--hcCCCCC
Confidence            544433210   0                                                         0  0124789


Q ss_pred             EEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEee
Q 018716          273 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       273 lILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                      .|+..=   ....+..+++.+.++|+ |+|++++..-..     ....+-...+++.|+ ..++++
T Consensus       114 ~V~~~~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~-~~~~~~  169 (198)
T PRK00377        114 RIFIGG---GSEKLKEIISASWEIIK-KGGRIVIDAILL-----ETVNNALSALENIGF-NLEITE  169 (198)
T ss_pred             EEEECC---CcccHHHHHHHHHHHcC-CCcEEEEEeecH-----HHHHHHHHHHHHcCC-CeEEEE
Confidence            988731   22346777878888887 889887644322     246777788888886 665544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.59  E-value=3.2e-06  Score=69.37  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++.. +..+|+++|+++.+++.
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~   58 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRL   58 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHH
Confidence            35789999999999999988864 44689999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.57  E-value=1.1e-06  Score=83.41  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             CcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716           91 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus        91 G~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      |++.=-.++.|+.|..-        ...++|||||||+|++|++++.. ...++++.++++++.+. ...|+.+|-
T Consensus        26 ~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~-A~~nv~ln~   92 (248)
T COG4123          26 GFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEM-AQRNVALNP   92 (248)
T ss_pred             ccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHH-HHHHHHhCc
Confidence            34444466788888742        23889999999999999999864 44689999999998865 567777764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.57  E-value=1.9e-06  Score=82.83  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=35.7

Q ss_pred             CEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          119 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++|||+|||+|..++.++... ..+|+++|+++.+++. ...|+..|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~-a~~n~~~~  161 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV-AEENAEKN  161 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            799999999999999988643 3589999999999864 34555443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.56  E-value=1.7e-07  Score=76.95  Aligned_cols=38  Identities=34%  Similarity=0.487  Sum_probs=34.1

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          118 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      |.+|||+|||+|...+.++..+..++++.|+++..++.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~   38 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVEL   38 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHH
Confidence            56999999999999999998876799999999998754

...

>PRK08317 hypothetical protein; Provisional

Probab=98.55  E-value=2.9e-06  Score=77.15  Aligned_cols=104  Identities=26%  Similarity=0.363  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|.....++..  ...+|+++|.++.+++..     +.|...                   ...++++
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a-----~~~~~~-------------------~~~~~~~   73 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-----KERAAG-------------------LGPNVEF   73 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----HHHhhC-------------------CCCceEE
Confidence            46889999999999988877753  235899999999887532     222110                   0123444


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|....+                                                               ...+.||+
T Consensus        74 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~   90 (241)
T PRK08317         74 VRGDADGLP---------------------------------------------------------------FPDGSFDA   90 (241)
T ss_pred             EecccccCC---------------------------------------------------------------CCCCCceE
Confidence            433322110                                                               12467999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      |++..++.+......+++.+.++|+ |+|.+++.
T Consensus        91 v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~  123 (241)
T PRK08317         91 VRSDRVLQHLEDPARALAEIARVLR-PGGRVVVL  123 (241)
T ss_pred             EEEechhhccCCHHHHHHHHHHHhc-CCcEEEEE
Confidence            9999999888888999999999997 88887765

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.54  E-value=5.6e-07  Score=84.79  Aligned_cols=39  Identities=15%  Similarity=0.070  Sum_probs=33.9

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      .+.||+|++..++......+.+++-+.+.|+ |+|.+++.
T Consensus        87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~  125 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQ  125 (255)
T ss_pred             CCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence            3579999999999988888888888999997 89988874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.53  E-value=2.3e-06  Score=89.00  Aligned_cols=47  Identities=23%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++.+|||+|||+|..++.++. ....+|+++|+|+.+++. +..|+..|
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~-A~~N~~~~  185 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEV-AKSNAIKY  185 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence            456999999999999998775 344589999999999865 45555443

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.50  E-value=1.8e-06  Score=83.39  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=37.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++++|||+|||+|..++.++... ..+|+++|+|+.+++. ++.|+..|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~-A~~n~~~~  168 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV-AEINIERH  168 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            45799999999999999988642 3489999999999865 34555444

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.49  E-value=2.3e-06  Score=78.01  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=41.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.+++||||+||+|.+|+.++..|+++|++.|.++.+++. .+.|+..|
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~-~~~N~~~~   95 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQT-LKENLALL   95 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            5789999999999999999999999899999999998854 34555554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.47  E-value=1.5e-06  Score=86.30  Aligned_cols=46  Identities=22%  Similarity=0.387  Sum_probs=36.1

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          118 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..+|||||||+|..++.++..+ ..+|+++|+++.+++. .+.|+..|
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~-A~~nl~~n  243 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES-SRATLAAN  243 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            4589999999999999988654 3589999999999865 34455444

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=5.1e-06  Score=80.31  Aligned_cols=45  Identities=27%  Similarity=0.317  Sum_probs=37.5

Q ss_pred             EEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          120 RVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       120 rVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      +|||||||+|.+++.++... ..+|+++|+|+..+++ .+.|...|.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~-A~~Na~~~~  158 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALAL-ARENAERNG  158 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHH-HHHHHHHcC
Confidence            89999999999999998754 3589999999999965 566666664

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.46  E-value=3.3e-06  Score=77.63  Aligned_cols=40  Identities=38%  Similarity=0.641  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++++|||+|||+|..+..++..+. +|+++|+++++++.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~   92 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM   92 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            35789999999999999998887665 89999999999854

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.45  E-value=3.3e-06  Score=84.92  Aligned_cols=39  Identities=33%  Similarity=0.498  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. |. +|+++|+++++++.
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~  205 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKL  205 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            47889999999999999888764 54 89999999998854

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.45  E-value=5.4e-07  Score=88.82  Aligned_cols=52  Identities=29%  Similarity=0.358  Sum_probs=42.6

Q ss_pred             CCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          112 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       112 ~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      ++..|++|.|||+|||||++++++|+.|+++|++.|.+. +. ......++.|.
T Consensus        55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia-~~a~~iv~~N~  106 (346)
T KOG1499|consen   55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IA-DFARKIVKDNG  106 (346)
T ss_pred             chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HH-HHHHHHHHhcC
Confidence            345699999999999999999999999999999999887 44 33455566553

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.45  E-value=5.7e-08  Score=77.95  Aligned_cols=35  Identities=14%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEE
Q 018716          269 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVV  304 (351)
Q Consensus       269 ~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~  304 (351)
                      .+||+|+++.++++-+..+.+++.+.++|+ |+|+.
T Consensus        65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l   99 (99)
T PF08242_consen   65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL   99 (99)
T ss_dssp             ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred             cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence            699999999999999999999999999997 88864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.44  E-value=8.9e-06  Score=77.23  Aligned_cols=61  Identities=23%  Similarity=0.276  Sum_probs=42.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      ..|++.+.....   ......+|||+|||+|..++.++. .+..+|+++|+|+.+++. .+.|+..
T Consensus        71 e~Lv~~~l~~~~---~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~-A~~N~~~  132 (251)
T TIGR03704        71 EFLVDEAAALAR---PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC-ARRNLAD  132 (251)
T ss_pred             HHHHHHHHHhhc---ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHH
Confidence            466666654321   112346899999999999998875 334589999999999864 3444443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=5.9e-07  Score=82.01  Aligned_cols=78  Identities=24%  Similarity=0.254  Sum_probs=55.0

Q ss_pred             cccCCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716           77 GFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  156 (351)
Q Consensus        77 g~~~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~  156 (351)
                      ++.+-++.-..|.+--       .++.++..... ...+..|++|+|||||||.+++.+++.|++.|++.|++++.++.+
T Consensus        13 ~f~~p~~~LEQY~Tp~-------~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~   84 (198)
T COG2263          13 GFPNPKLGLEQYRTPA-------PLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA   84 (198)
T ss_pred             CCCCCCccceecCCCh-------HHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHH
Confidence            3344444445566542       33444443332 245689999999999999999999999999999999999999653


Q ss_pred             hHHHHHH
Q 018716          157 TVPNVLA  163 (351)
Q Consensus       157 t~~Nv~l  163 (351)
                       +.|...
T Consensus        85 -r~N~~~   90 (198)
T COG2263          85 -RANAEE   90 (198)
T ss_pred             -HHHHHh
Confidence             344443

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.44  E-value=3.1e-06  Score=76.61  Aligned_cols=102  Identities=25%  Similarity=0.382  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC--CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga--~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ++++|||+|||+|..+..++..+.  .++++.|+++.+++.     ...|.. .                   ..++++.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~-----~~~~~~-~-------------------~~~i~~~   93 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEV-----AKKKSE-L-------------------PLNIEFI   93 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHH-----HHHHhc-c-------------------CCCceEE
Confidence            789999999999999888876544  489999999988743     333321 0                   1134444


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ...+.||+|
T Consensus        94 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i  110 (223)
T TIGR01934        94 QADAEALP---------------------------------------------------------------FEDNSFDAV  110 (223)
T ss_pred             ecchhcCC---------------------------------------------------------------CCCCcEEEE
Confidence            43322110                                                               123579999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +.+..+.+......+++.+.++|+ |+|.+++.
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~  142 (223)
T TIGR01934       111 TIAFGLRNVTDIQKALREMYRVLK-PGGRLVIL  142 (223)
T ss_pred             EEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEE
Confidence            999888888888889999999997 89988875

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.43  E-value=4.4e-06  Score=78.67  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH---cCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~---~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+.+|||+|||+|...+.++.   ....+|++.|.++.|++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~   97 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER   97 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence            3678999999999999887765   223589999999999865

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.40  E-value=8.2e-06  Score=79.76  Aligned_cols=45  Identities=22%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             CEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          119 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++|||+|||+|..++.++.. ...+|+++|+|+.+++. ...|+..|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~-A~~n~~~~  180 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV-AEINIERH  180 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            68999999999999998864 34589999999999964 34555443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.40  E-value=3.9e-06  Score=77.32  Aligned_cols=40  Identities=10%  Similarity=-0.033  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|.....++.. +..++++.|+|+++++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~   82 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK   82 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            36779999999999999887754 44589999999999864

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.40  E-value=8.4e-07  Score=71.70  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=26.3

Q ss_pred             EEEEcccCCHHHHHHHHc---C-CCEEEEEcCChHHHHh
Q 018716          121 VLELSCGYGLPGIFACLK---G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       121 VLELGcGtGL~gl~aa~~---G-a~~V~~TD~s~~vL~~  155 (351)
                      |||+|||+|-....++..   | ..++++.|++++|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~   39 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL   39 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH
Confidence            799999999999888754   3 2699999999999853

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.39  E-value=4e-06  Score=76.98  Aligned_cols=39  Identities=23%  Similarity=0.468  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+..++||||||.|--++++|..|. .|++.|+|+..++.
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~   67 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK   67 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            5788999999999999999999998 79999999988754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.38  E-value=4.6e-06  Score=63.97  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             CCCccEEEEeccccC-ccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          268 EGGYDVILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       268 ~~~~DlILasDviY~-~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ..+||+|++.-+.+. ......+++.+..+|+ ++|.+++.
T Consensus        64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~  103 (107)
T cd02440          64 DESFDVIISDPPLHHLVEDLARFLEEARRLLK-PGGVLVLT  103 (107)
T ss_pred             CCceEEEEEccceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence            467999999999988 8888889999888886 89988876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00740 methyltransferase, putative

Probab=98.36  E-value=1.1e-05  Score=75.16  Aligned_cols=40  Identities=18%  Similarity=0.119  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc---CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~---Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|...+.++..   ...+|++.|+++.|++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~   94 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER   94 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence            36789999999999998887753   23589999999999854

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.35  E-value=1.1e-05  Score=75.96  Aligned_cols=139  Identities=12%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+.++|||+|||+|..++.++.  .+..+|+..|+++++++. .+.|+..|.                     +..++++
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~-A~~n~~~~g---------------------l~~~i~~  124 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV-GLEFIKKAG---------------------VDHKINF  124 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence            4688999999999998776654  335699999999998854 344544332                     2346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +..+                               .                       .....++||+
T Consensus       125 ~~gda~~~---L~~l-------------------------------~-----------------------~~~~~~~fD~  147 (234)
T PLN02781        125 IQSDALSA---LDQL-------------------------------L-----------------------NNDPKPEFDF  147 (234)
T ss_pred             EEccHHHH---HHHH-------------------------------H-----------------------hCCCCCCCCE
Confidence            77766431   1000                               0                       0012467999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc--------------ccccccchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK--------------NYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~--------------~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+. |.-  ...+..+++.+.++|+ |+|++.+-.--              +.-.....+++|.+.+.++--+.+.++
T Consensus       148 Vfi-Da~--k~~y~~~~~~~~~ll~-~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l  221 (234)
T PLN02781        148 AFV-DAD--KPNYVHFHEQLLKLVK-VGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI  221 (234)
T ss_pred             EEE-CCC--HHHHHHHHHHHHHhcC-CCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence            876 321  3567778888888887 88987652110              000011356788888877655565554

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.35  E-value=5.6e-06  Score=76.25  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. + ..+|+..|+++++++.
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~  117 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK  117 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            57889999999999999888764 2 2369999999998854

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.34  E-value=7.8e-06  Score=79.13  Aligned_cols=118  Identities=21%  Similarity=0.314  Sum_probs=81.3

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      =++...-.+.+++..    ..-+|++|||||||-|...+++|.. |+ +|+++++|++..+.     ++.-+...     
T Consensus        54 ~eAQ~~k~~~~~~kl----~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~-----~~~r~~~~-----  118 (283)
T COG2230          54 EEAQRAKLDLILEKL----GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAY-----AEKRIAAR-----  118 (283)
T ss_pred             HHHHHHHHHHHHHhc----CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHH-----HHHHHHHc-----
Confidence            344444445555442    3458999999999999999999975 55 89999999987632     22222110     


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                  .+..+|++..-||...                                                    
T Consensus       119 ------------gl~~~v~v~l~d~rd~----------------------------------------------------  134 (283)
T COG2230         119 ------------GLEDNVEVRLQDYRDF----------------------------------------------------  134 (283)
T ss_pred             ------------CCCcccEEEecccccc----------------------------------------------------
Confidence                        1233455555555431                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccC--HHHHHHHHHHHcCCCCeEEEE
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYL  306 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~--~~~L~~~l~~~L~~p~gv~yl  306 (351)
                                    .++||-|++.+..-....  ++.+++.++++|+ |+|++++
T Consensus       135 --------------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~ll  174 (283)
T COG2230         135 --------------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLL  174 (283)
T ss_pred             --------------ccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEE
Confidence                          223899999998877655  9999999999997 8888775

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.34  E-value=7.9e-06  Score=74.91  Aligned_cols=39  Identities=31%  Similarity=0.510  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++..+. +|+++|.++.+++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~  100 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE  100 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            4678999999999999988887775 69999999999854

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.29  E-value=8.6e-06  Score=83.18  Aligned_cols=60  Identities=20%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..|.+.+...+    ...++.+|||+|||+|..++.++..+ .+|++.|+|+++++.. ..|+..|
T Consensus       283 e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A-~~n~~~~  342 (443)
T PRK13168        283 QKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERA-RENARRN  342 (443)
T ss_pred             HHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHH-HHHHHHc
Confidence            44555555442    22467899999999999999988765 5899999999999652 3444433

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.29  E-value=1.1e-05  Score=74.11  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++. .+ ..+|++.|+++++++.
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~  112 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIY  112 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            4678999999999999977764 32 3489999999998854

>PLN02672 methionine S-methyltransferase

Probab=98.29  E-value=1.3e-05  Score=89.65  Aligned_cols=95  Identities=24%  Similarity=0.263  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      +.+..|++.|....   ...+++++|||||||+|..++.++.. ...+|+++|+|+++++. ...|+.+|..... ... 
T Consensus       100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~-A~~Na~~n~l~~~-~~~-  173 (1082)
T PLN02672        100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV-AWINLYLNALDDD-GLP-  173 (1082)
T ss_pred             hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcCcccc-ccc-
Confidence            55667777754321   12367889999999999999998864 34689999999999965 5677777642100 000 


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEE  200 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~  200 (351)
                          ...-....+..+|+|+.+||-+
T Consensus       174 ----~~~~~~~~l~~rV~f~~sDl~~  195 (1082)
T PLN02672        174 ----VYDGEGKTLLDRVEFYESDLLG  195 (1082)
T ss_pred             ----ccccccccccccEEEEECchhh
Confidence                0000000123468899998865

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.28  E-value=4.3e-06  Score=76.98  Aligned_cols=122  Identities=23%  Similarity=0.359  Sum_probs=71.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      +-.++||+|||.|..+..++.. ..+++++|+++..++..            +.+...             .+.|++..+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~A------------r~Rl~~-------------~~~V~~~~~   96 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARA------------RERLAG-------------LPHVEWIQA   96 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHH------------HHHTTT--------------SSEEEEES
T ss_pred             ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHH------------HHhcCC-------------CCCeEEEEC
Confidence            3468999999999999888754 25899999999887531            111100             124555433


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      +--+                                                                ....++||+|+.
T Consensus        97 dvp~----------------------------------------------------------------~~P~~~FDLIV~  112 (201)
T PF05401_consen   97 DVPE----------------------------------------------------------------FWPEGRFDLIVL  112 (201)
T ss_dssp             -TTT-------------------------------------------------------------------SS-EEEEEE
T ss_pred             cCCC----------------------------------------------------------------CCCCCCeeEEEE
Confidence            2100                                                                024679999999


Q ss_pred             eccccCccCHHH---HHHHHHHHcCCCCeEEEEEeccc--cc--cccchHHHHHHhhhhc
Q 018716          277 TEIPYSVTSLKK---LYLLIKKCLRPPYGVVYLATKKN--YV--GFNNAARHLRSLVDEE  329 (351)
Q Consensus       277 sDviY~~~~~~~---L~~~l~~~L~~p~gv~ylA~K~~--yf--gv~gg~~~F~~~ve~~  329 (351)
                      ||+.|.-...+.   +++.+...|. |+|.+.++.-+-  ++  |---|.+.-.+++.+.
T Consensus       113 SEVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~  171 (201)
T PF05401_consen  113 SEVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH  171 (201)
T ss_dssp             ES-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred             ehHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence            999999976554   4555555676 999999985432  22  2222566666666554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.27  E-value=6.9e-06  Score=77.34  Aligned_cols=54  Identities=28%  Similarity=0.442  Sum_probs=32.4

Q ss_pred             cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716           92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus        92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      .+.|..  .+++.+.        ..++.+|||+|||||..++.++.. + ..+|++.|++++||+.
T Consensus        32 ~~~wr~--~~~~~~~--------~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~   87 (233)
T PF01209_consen   32 DRRWRR--KLIKLLG--------LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV   87 (233)
T ss_dssp             -----S--HHHHHHT----------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred             HHHHHH--HHHhccC--------CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence            356776  4444442        246789999999999999988753 3 2489999999999954

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.25  E-value=7.9e-06  Score=77.38  Aligned_cols=119  Identities=24%  Similarity=0.423  Sum_probs=83.3

Q ss_pred             cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhh
Q 018716           92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARE  170 (351)
Q Consensus        92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~  170 (351)
                      -+.|.-.  ++..+..        .+|.+|||+|||||-..+.+++ .|..+|++.|+|+.||+..        ..... 
T Consensus        36 ~~~Wr~~--~i~~~~~--------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a--------~~k~~-   96 (238)
T COG2226          36 HRLWRRA--LISLLGI--------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA--------REKLK-   96 (238)
T ss_pred             hHHHHHH--HHHhhCC--------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH--------HHHhh-
Confidence            4688864  4444321        2799999999999999998885 5567999999999998431        11110 


Q ss_pred             hhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccc
Q 018716          171 RQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSR  250 (351)
Q Consensus       171 ~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r  250 (351)
                              ..     ... .|+|..+|=+++|                                                
T Consensus        97 --------~~-----~~~-~i~fv~~dAe~LP------------------------------------------------  114 (238)
T COG2226          97 --------KK-----GVQ-NVEFVVGDAENLP------------------------------------------------  114 (238)
T ss_pred             --------cc-----Ccc-ceEEEEechhhCC------------------------------------------------
Confidence                    00     011 1566555544332                                                


Q ss_pred             cccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          251 KLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       251 ~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                                     -.+..||++..+=.+=+....+..++-+.+.|+ |+|++++.
T Consensus       115 ---------------f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vl  155 (238)
T COG2226         115 ---------------FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVL  155 (238)
T ss_pred             ---------------CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEE
Confidence                           246789999999888888889988888999997 89977765

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.23  E-value=4e-05  Score=70.80  Aligned_cols=138  Identities=15%  Similarity=0.174  Sum_probs=84.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  192 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~  192 (351)
                      ..++.+|||||||+|..+..++.. + ..+|++.|+++ |.          +                       .+.|.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~-----------------------~~~v~   94 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------P-----------------------IVGVD   94 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------C-----------------------CCCcE
Confidence            357889999999999999887754 3 24899999987 21          0                       02466


Q ss_pred             eeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCcc
Q 018716          193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  272 (351)
Q Consensus       193 ~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~D  272 (351)
                      +..+|....+.+.. +.                                                      .......||
T Consensus        95 ~i~~D~~~~~~~~~-i~------------------------------------------------------~~~~~~~~D  119 (209)
T PRK11188         95 FLQGDFRDELVLKA-LL------------------------------------------------------ERVGDSKVQ  119 (209)
T ss_pred             EEecCCCChHHHHH-HH------------------------------------------------------HHhCCCCCC
Confidence            77777765432111 00                                                      001246789


Q ss_pred             EEEEeccccCcc-----------CHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEeeecC
Q 018716          273 VILLTEIPYSVT-----------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT  341 (351)
Q Consensus       273 lILasDviY~~~-----------~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e~~  341 (351)
                      +|++.-..+...           .+..+++.+.++|+ |+|.+++..-.     ++...+|+..++ ..+..+++++..+
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~-----~~~~~~~l~~l~-~~f~~v~~~Kp~s  192 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQ-----GEGFDEYLREIR-SLFTKVKVRKPDS  192 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEec-----CcCHHHHHHHHH-hCceEEEEECCcc
Confidence            998854343321           12456677777887 89998886311     234566665543 3566888777666


Q ss_pred             C----cceeee
Q 018716          342 D----RDIWKF  348 (351)
Q Consensus       342 d----~~i~~~  348 (351)
                      .    +|++.+
T Consensus       193 sr~~s~e~~~~  203 (209)
T PRK11188        193 SRARSREVYIV  203 (209)
T ss_pred             ccccCceeEEE
Confidence            4    566554

>PLN03075 nicotianamine synthase; Provisional

Probab=98.23  E-value=2.7e-05  Score=75.94  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             CCCEEEEEccc-CCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          117 RGKRVLELSCG-YGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       117 ~~krVLELGcG-tGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      ..++|+|+||| .|+.++.++.  ....+++..|+++++++..     +.+....                ..+..++.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A-----r~~~~~~----------------~gL~~rV~F  181 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA-----RRLVSSD----------------PDLSKRMFF  181 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH-----HHHhhhc----------------cCccCCcEE
Confidence            78999999999 5566665552  2345899999999987531     2222110                013446777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+..                                                               ....+||+
T Consensus       182 ~~~Da~~~~---------------------------------------------------------------~~l~~FDl  198 (296)
T PLN03075        182 HTADVMDVT---------------------------------------------------------------ESLKEYDV  198 (296)
T ss_pred             EECchhhcc---------------------------------------------------------------cccCCcCE
Confidence            665543210                                                               01357999


Q ss_pred             EEEeccccC-ccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          274 ILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       274 ILasDviY~-~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      |...=++|. .+..+.+++-|.+.|+ |+|++++..
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRS  233 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcC-CCcEEEEec
Confidence            999966787 4888999999999997 999998875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.21  E-value=3e-05  Score=76.11  Aligned_cols=52  Identities=29%  Similarity=0.222  Sum_probs=40.7

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      -.|+..|.+..    ..-++.+|||.|||+|...+.++..|+ +|++.|+++.|++.
T Consensus       168 ~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~  219 (329)
T TIGR01177       168 PKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAG  219 (329)
T ss_pred             HHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHH
Confidence            35666666542    124678999999999999888887775 89999999999854

This family is found exclusively in the Archaea.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.19  E-value=3e-05  Score=70.96  Aligned_cols=52  Identities=17%  Similarity=0.062  Sum_probs=38.3

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+..++....    ...++.+|||+|||+|..+..++..+ .+|+..|+++++++.
T Consensus        64 p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~  115 (212)
T PRK00312         64 PYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWE  115 (212)
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHH
Confidence            34555554432    22467899999999999988777654 389999999988754

>PRK05785 hypothetical protein; Provisional

Probab=98.18  E-value=1.3e-05  Score=74.81  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||+|||||.....++.....+|++.|.|++|++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~   89 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM   89 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            467999999999999888776522489999999999854

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.17  E-value=2e-05  Score=71.55  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ...+|||||||+|..++.++.. ...+|++.|+++.+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~   55 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLA   55 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence            4569999999999999888764 34589999999999865

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.17  E-value=3.8e-05  Score=70.16  Aligned_cols=59  Identities=22%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCC-EEEEEcccCCHHHHHHHHcCCC-EEEEEcCChHHHHh
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGK-RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRC  155 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~k-rVLELGcGtGL~gl~aa~~Ga~-~V~~TD~s~~vL~~  155 (351)
                      ++-..+++||.+.+...+. .+.. ||||||||-|.+-.-++..|.. ..+++||++..+++
T Consensus        46 ~ae~riv~wl~d~~~~~rv-~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L  106 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRV-SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL  106 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhh-cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence            4457788999887642221 2333 9999999999988888876653 49999999998864

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.17  E-value=1.2e-05  Score=82.28  Aligned_cols=104  Identities=24%  Similarity=0.281  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..+..++..+ .+|++.|+++.+++.    |...|.                     ..+++.+..
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~----a~~~~~---------------------~~~~i~~~~   89 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKK----NESING---------------------HYKNVKFMC   89 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHH----HHHHhc---------------------cCCceEEEE
Confidence            467899999999999999988764 489999999998742    222211                     012455555


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|.....                         +                                    ......||+|+
T Consensus        90 ~d~~~~~-------------------------~------------------------------------~~~~~~fD~I~  108 (475)
T PLN02336         90 ADVTSPD-------------------------L------------------------------------NISDGSVDLIF  108 (475)
T ss_pred             ecccccc-------------------------c------------------------------------CCCCCCEEEEe
Confidence            4442210                         0                                    01246799999


Q ss_pred             EeccccCccC--HHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +.-+++.-..  ...+++-+.++|+ |+|++++.
T Consensus       109 ~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFR  141 (475)
T ss_pred             hhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence            9999886544  6778888888897 89988774

>PRK04266 fibrillarin; Provisional

Probab=98.17  E-value=0.00014  Score=68.28  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. +..+|++.|.+++|++.
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~  111 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRE  111 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence            47889999999999999888763 33489999999999864

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.17  E-value=2.5e-05  Score=72.11  Aligned_cols=40  Identities=25%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++.. +. .+|+..|+++++++.
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~  116 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEK  116 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            47889999999999999877753 32 489999999999864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.15  E-value=1.9e-05  Score=73.43  Aligned_cols=63  Identities=19%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             CCCCCcccch---hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           87 KPDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        87 ~y~gG~k~We---as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .|..+-.-|.   -+-.|.+++...     ..-++.|||++|||.|--.+++|..|. +|++.|+|+..++.
T Consensus         6 ry~~~~~~w~~~~p~~~l~~~~~~l-----~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~   71 (213)
T TIGR03840         6 RWQEGQIGFHQSEVNPLLVKHWPAL-----GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ   71 (213)
T ss_pred             HHhcCCCCCccCCCCHHHHHHHHhh-----CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence            3444444564   334666766542     112567999999999999999999997 89999999998864

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=3e-05  Score=75.54  Aligned_cols=47  Identities=32%  Similarity=0.610  Sum_probs=38.9

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          118 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      +.+|||||||.|.+|+.+++.. ..+++++|.|...++. .+.|+..|.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~-ar~Nl~~N~  206 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES-ARKNLAANG  206 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH-HHHhHHHcC
Confidence            3499999999999999999754 5689999999999875 466666664

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.14  E-value=4.4e-05  Score=69.12  Aligned_cols=46  Identities=17%  Similarity=0.092  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .++.+|||+|||+|..++.++.. ...+|++.|.++++++. ...|+.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~-a~~n~~   85 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNL-IRRNCD   85 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            46789999999999999888753 33589999999999865 344444

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.14  E-value=2.5e-05  Score=78.88  Aligned_cols=50  Identities=34%  Similarity=0.264  Sum_probs=44.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      .+|++||.+=|=||..|+.||+.||++|+..|.|...|+. ...|+.+|..
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~-a~~N~~LNg~  265 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW-ARENAELNGL  265 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHH-HHHHHHhcCC
Confidence            4699999999999999999999999999999999999965 5788888753

>PRK00811 spermidine synthase; Provisional

Probab=98.14  E-value=4.7e-05  Score=73.54  Aligned_cols=40  Identities=15%  Similarity=0.148  Sum_probs=34.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      ..++||+||||+|.....+++. +..+|++.|+++.|++.+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a  116 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC  116 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence            4689999999999998887765 667999999999998753

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.12  E-value=3.4e-05  Score=68.31  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~   50 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPR   50 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHH
Confidence            456799999999999999988764 589999999998854

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.12  E-value=1.5e-05  Score=77.93  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++.+++. ...|++.|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~-A~~n~~~~  218 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIAC-AKQSAAEL  218 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHH-HHHHHHHc
Confidence            467899999999999999999876 589999999999865 34444433

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.12  E-value=1.5e-05  Score=79.81  Aligned_cols=47  Identities=17%  Similarity=0.270  Sum_probs=37.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..+.+|||||||+|..++.++..+ .+|++.|+++.+++. ...|++.|
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~-a~~N~~~~  278 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIAC-AQQSAQML  278 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHH-HHHHHHHc
Confidence            456899999999999999998766 589999999999865 34454444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.11  E-value=2.2e-05  Score=75.10  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             CCCccEEEEecccc-Cc-cCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          268 EGGYDVILLTEIPY-SV-TSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       268 ~~~~DlILasDviY-~~-~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      .++||+|++..++. .. +....+++.+.++|+ |+|.++++..-
T Consensus       201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~E  244 (264)
T smart00138      201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHSE  244 (264)
T ss_pred             cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECcc
Confidence            56899999988854 33 345678888899997 99999998543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PHA03411 putative methyltransferase; Provisional

Probab=98.11  E-value=4.2e-05  Score=73.92  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+|||+|||+|.+++.++.. +..+|++.|+++.+++.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~  103 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARI  103 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            468999999999999887753 24589999999998865

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=6.4e-05  Score=68.56  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716           86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus        86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      ..||-+    |-+..|.+.|........ ....+-++|||||+|.++-+++.  .+...+.+||+|+..++. |+...+.
T Consensus        17 dVYEPa----EDTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~-Tl~TA~~   90 (209)
T KOG3191|consen   17 DVYEPA----EDTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA-TLETARC   90 (209)
T ss_pred             hccCcc----chhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH-HHHHHHh
Confidence            556633    567788888877643211 12267899999999999988875  234578999999999964 7777777


Q ss_pred             HHH
Q 018716          164 NLE  166 (351)
Q Consensus       164 N~~  166 (351)
                      |-.
T Consensus        91 n~~   93 (209)
T KOG3191|consen   91 NRV   93 (209)
T ss_pred             cCC
Confidence            754

>PRK03612 spermidine synthase; Provisional

Probab=98.04  E-value=4.1e-05  Score=80.01  Aligned_cols=40  Identities=28%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~~  156 (351)
                      +.++||++|||+|.....+++.+. ++|++.|++++|++.+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a  337 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA  337 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH
Confidence            568999999999999888776543 7999999999999753

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.01  E-value=7.6e-05  Score=72.24  Aligned_cols=38  Identities=13%  Similarity=0.050  Sum_probs=30.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      ++.+|||+|||+|..++.+++.. ..++++.|. +.+++.
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~  187 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL  187 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH
Confidence            56799999999999999888653 348999998 567754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.00  E-value=8.3e-05  Score=75.52  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++.+++. .+.|+..|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~-a~~n~~~~  337 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEK-AQQNAELN  337 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHH-HHHHHHHh
Confidence            356899999999999999988754 589999999999865 34555554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.00  E-value=5.8e-05  Score=70.36  Aligned_cols=51  Identities=24%  Similarity=0.161  Sum_probs=40.4

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      -.|.+++...     ...++.|||++|||.|--.+++|..|. +|++.|+++..++.
T Consensus        24 ~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~   74 (218)
T PRK13255         24 PLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ   74 (218)
T ss_pred             HHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence            3566665432     113567999999999999999999987 89999999998864

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.99  E-value=3.2e-05  Score=76.30  Aligned_cols=40  Identities=30%  Similarity=0.423  Sum_probs=36.4

Q ss_pred             CCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716          113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI  153 (351)
Q Consensus       113 ~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL  153 (351)
                      ..+|.+|.|||+|||+|+++++++..|+++|++.+-+. |-
T Consensus       173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA  212 (517)
T KOG1500|consen  173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA  212 (517)
T ss_pred             ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH
Confidence            45799999999999999999999999999999999875 54

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.98  E-value=3.3e-05  Score=70.22  Aligned_cols=57  Identities=35%  Similarity=0.524  Sum_probs=42.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ  167 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~  167 (351)
                      .|.++|...      .+.|.+||||=||||.+|+-|+..||++|++.|.|+..+     ..++.|+..
T Consensus        31 alFniL~~~------~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-----~~i~~N~~~   87 (183)
T PF03602_consen   31 ALFNILQPR------NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-----KIIKKNLEK   87 (183)
T ss_dssp             HHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-----HHHHHHHHH
T ss_pred             HHHHHhccc------ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-----HHHHHHHHH
Confidence            455556543      168999999999999999999999999999999999887     456667653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PTZ00146 fibrillarin; Provisional

Probab=97.97  E-value=0.00033  Score=68.28  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=44.6

Q ss_pred             cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716           92 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus        92 ~k~Weas-~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      .++|+-- --|+..|..-+.. ....++.+|||||||+|..+..++.. | ...|++.|+++.+++.
T Consensus       107 yR~w~p~rSKlaa~i~~g~~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d  172 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGGVAN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD  172 (293)
T ss_pred             eeeeCCcccHHHHHHHCCcce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence            6789753 2556555443321 12357889999999999999888753 3 3489999999987754

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.97  E-value=6.9e-06  Score=77.32  Aligned_cols=64  Identities=16%  Similarity=0.273  Sum_probs=45.4

Q ss_pred             CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----ccccc------chHHHHHHhhhhcCc
Q 018716          267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----YVGFN------NAARHLRSLVDEEGI  331 (351)
Q Consensus       267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----yfgv~------gg~~~F~~~ve~~G~  331 (351)
                      ...+||+|.++||+----.++.++-....+|+ |+|..-+....-    .|-++      .+-.--++.++..|+
T Consensus       185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl  258 (287)
T COG4976         185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGL  258 (287)
T ss_pred             cCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCc
Confidence            46789999999999889999999999999997 888766653110    02111      133334567777886

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.93  E-value=0.0001  Score=66.33  Aligned_cols=37  Identities=30%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAE  151 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~  151 (351)
                      ..++.+|||+|||+|..+..++..  +..+|++.|+++.
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            357899999999999998877653  3457999999984

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.93  E-value=0.00019  Score=73.32  Aligned_cols=46  Identities=17%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .++.+|||+|||+|..++.++..  +..+|++.|+++.+++. ++.|+.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~-~~~n~~  296 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL-IEENAK  296 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            36789999999999999887753  34589999999999854 234443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.92  E-value=0.00014  Score=69.32  Aligned_cols=39  Identities=18%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C---CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-G---AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-G---a~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||+|||+|.....++.. .   ..+|++.|+++.+++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~  127 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY  127 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence            4578999999999988776642 1   2379999999999854

>PRK06922 hypothetical protein; Provisional

Probab=97.92  E-value=8.1e-05  Score=79.38  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++. ....+|+++|+++.|++.
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~  457 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT  457 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            4788999999999998877664 334589999999999854

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.91  E-value=0.0003  Score=71.69  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~  155 (351)
                      .+|.+|||+|||+|..++.++..+. .+|++.|.++.+++.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~  283 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER  283 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4788999999999999988876432 589999999999865

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.90  E-value=0.00016  Score=71.40  Aligned_cols=40  Identities=28%  Similarity=0.319  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. +. .+|++.|+++++++.
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~  120 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI  120 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            46789999999999999888753 32 369999999999854

>PRK04457 spermidine synthase; Provisional

Probab=97.88  E-value=4.9e-05  Score=72.65  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      +.++|||||||+|.....++. ....+|++.|+++++++.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~  105 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV  105 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            568999999999999987764 344589999999999864

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.86  E-value=0.00019  Score=68.79  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=50.3

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe---ccccccccc-------------------hHHHHHHh
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVGFNN-------------------AARHLRSL  325 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~---K~~yfgv~g-------------------g~~~F~~~  325 (351)
                      ..+||+|-+--++=+...--.|++-|++.|+ |+|++++|.   =+.|...++                   .+..|.+.
T Consensus       149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v  227 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV  227 (265)
T ss_pred             CCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence            4579999999999999999999999999998 799999882   233333322                   46667777


Q ss_pred             hhhcCceeeEE
Q 018716          326 VDEEGIFGAHL  336 (351)
Q Consensus       326 ve~~G~~~~~~  336 (351)
                      ++..|+ +..-
T Consensus       228 ~~p~GF-~v~~  237 (265)
T PF05219_consen  228 FEPAGF-EVER  237 (265)
T ss_pred             HHhcCC-EEEE
Confidence            777775 4443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK06202 hypothetical protein; Provisional

Probab=97.84  E-value=0.00011  Score=68.27  Aligned_cols=40  Identities=23%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH----cCC-CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL----KGA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~----~Ga-~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||||||+|..+..++.    .|. .+|+++|++++|++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~  103 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF  103 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence            3567999999999998877653    232 389999999999854

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.82  E-value=4.7e-05  Score=71.68  Aligned_cols=57  Identities=21%  Similarity=0.148  Sum_probs=49.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      ++.++.-|...+.+.    ...+++++|||+|||||..+..++..|+++|++.|.+++++.
T Consensus        56 vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~  112 (228)
T TIGR00478        56 VSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLA  112 (228)
T ss_pred             hhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            577888888888765    345799999999999999999999989999999999998873

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.82  E-value=0.00015  Score=74.31  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-c-CCCEEEEEcCChHHHHh
Q 018716           92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus        92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~-Ga~~V~~TD~s~~vL~~  155 (351)
                      +.+++.+-.++-.+...       .+|.+|||+|||+|..++.++. . +..+|++.|.++.+++.
T Consensus       232 ~~vqd~~s~l~~~~l~~-------~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~  290 (445)
T PRK14904        232 VSVQNPTQALACLLLNP-------QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK  290 (445)
T ss_pred             EEEeCHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            45776554555444432       4788999999999998887764 2 23489999999999864

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.81  E-value=0.00047  Score=62.31  Aligned_cols=38  Identities=21%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      ++++|||+|||+|..+..++......+++.|+++++++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~   50 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL   50 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH
Confidence            56799999999999887776544447899999998774

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK01581 speE spermidine synthase; Validated

Probab=97.81  E-value=0.00025  Score=71.12  Aligned_cols=39  Identities=31%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++||+||||+|.....+++. +..+|++.|++++|++.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIel  189 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINM  189 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Confidence            5679999999999876666654 35799999999999865

>PRK04148 hypothetical protein; Provisional

Probab=97.80  E-value=0.00011  Score=63.86  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=39.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCEEEEEcCChHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETI  153 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~~Ga~~V~~TD~s~~vL  153 (351)
                      .+++||.++..    ..++++|||+|||+|. +...++..|. .|+++|+++..+
T Consensus         3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV   52 (134)
T PRK04148          3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV   52 (134)
T ss_pred             HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH
Confidence            57888877642    2467899999999997 7877777786 899999999865

>TIGR03438 probable methyltransferase

Probab=97.80  E-value=0.00017  Score=70.04  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~  155 (351)
                      ++.+|||||||+|.....++...  ..+|++.|+|++||+.
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~  103 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKE  103 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHH
Confidence            56899999999999988776542  2489999999999854

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.79  E-value=0.00018  Score=71.82  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ...|.+++.....     ..+.+||||+||+|..|+.++.. +.+|++.|+++.+++. .+.|+..|
T Consensus       192 ~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~-a~~N~~~~  251 (362)
T PRK05031        192 NEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA-AQYNIAAN  251 (362)
T ss_pred             HHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH-HHHHHHHh
Confidence            3456666655431     12357999999999999977764 5699999999999965 45666655

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.77  E-value=0.00022  Score=71.00  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=36.0

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          118 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.+||||+||+|..|+.++.. +.+|++.|+++++++. ...|+..|
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~-a~~n~~~~  242 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNA-AQYNIAAN  242 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence            457999999999999977764 4699999999999865 34555544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.77  E-value=0.00012  Score=71.17  Aligned_cols=49  Identities=31%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .+|++||++=|=||..|++|+..||.+|+..|.|...++. .+.|..+|.
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~-a~~N~~lNg  170 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEW-AKENAALNG  170 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHcC
Confidence            4789999999999999999999999999999999999965 466777774

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02476 O-methyltransferase

Probab=97.76  E-value=0.0012  Score=64.14  Aligned_cols=138  Identities=13%  Similarity=0.190  Sum_probs=87.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+.++|||+|+|+|..++.+++ .+ ..+|+..|.+++..+. .+.|++.+.                     +..+|++
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-Ar~n~~~aG---------------------l~~~I~l  174 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-AKRYYELAG---------------------VSHKVNV  174 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence            4689999999999999998886 22 3479999999988754 344544332                     2346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..||-.+   .+..+                               +                       .....+.||+
T Consensus       175 i~GdA~e---~L~~l-------------------------------~-----------------------~~~~~~~FD~  197 (278)
T PLN02476        175 KHGLAAE---SLKSM-------------------------------I-----------------------QNGEGSSYDF  197 (278)
T ss_pred             EEcCHHH---HHHHH-------------------------------H-----------------------hcccCCCCCE
Confidence            6665332   11100                               0                       0012357888


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc----------cchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv----------~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+.- .  +...++..++.+.++|+ |+|++.+= --...|.          .-++++|.+.+.++.-|.+.++
T Consensus       198 VFID-a--~K~~Y~~y~e~~l~lL~-~GGvIV~D-NvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll  266 (278)
T PLN02476        198 AFVD-A--DKRMYQDYFELLLQLVR-VGGVIVMD-NVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV  266 (278)
T ss_pred             EEEC-C--CHHHHHHHHHHHHHhcC-CCcEEEEe-cCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence            7752 1  25678888898888886 78876542 1111121          0147899999988766666655

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.72  E-value=0.0012  Score=61.25  Aligned_cols=138  Identities=21%  Similarity=0.300  Sum_probs=86.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+-++|||+|+++|.-++.++.. + ..+|+..|.+++..+. .++|++...                     +..+|++
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~-A~~~~~~ag---------------------~~~~I~~  101 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI-ARENFRKAG---------------------LDDRIEV  101 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH-HHHHHHHTT---------------------GGGGEEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH-HHHHHHhcC---------------------CCCcEEE
Confidence            46789999999999999998852 2 3589999999988743 334443321                     2346888


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +..+.                                                      .....++||+
T Consensus       102 ~~gda~~~---l~~l~------------------------------------------------------~~~~~~~fD~  124 (205)
T PF01596_consen  102 IEGDALEV---LPELA------------------------------------------------------NDGEEGQFDF  124 (205)
T ss_dssp             EES-HHHH---HHHHH------------------------------------------------------HTTTTTSEEE
T ss_pred             EEeccHhh---HHHHH------------------------------------------------------hccCCCceeE
Confidence            77765431   11000                                                      0012468999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc-cc---------chHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FN---------NAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg-v~---------gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |.-=-   ....+...++.+.++|+ ++|++.+=. -.+.| +.         -.+++|.+.+.++--|.+-++
T Consensus       125 VFiDa---~K~~y~~y~~~~~~ll~-~ggvii~DN-~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll  193 (205)
T PF01596_consen  125 VFIDA---DKRNYLEYFEKALPLLR-PGGVIIADN-VLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL  193 (205)
T ss_dssp             EEEES---TGGGHHHHHHHHHHHEE-EEEEEEEET-TTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE
T ss_pred             EEEcc---cccchhhHHHHHhhhcc-CCeEEEEcc-ccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE
Confidence            98633   46778888888888997 777666532 22222 10         136789999998766666654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00417 speE spermidine synthase

Probab=97.69  E-value=0.00048  Score=65.87  Aligned_cols=39  Identities=18%  Similarity=0.092  Sum_probs=32.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      ..++||+||||+|.....++... ..+|++.|+++++++.
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~  111 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIEL  111 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHH
Confidence            45699999999998877666544 6789999999999865

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=0.00018  Score=66.97  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=36.4

Q ss_pred             CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      .++.||.|+.+=++.+.+.....++-++++|+ |+|++++-
T Consensus       142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifi  181 (252)
T KOG4300|consen  142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFI  181 (252)
T ss_pred             ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            46889999999999999999999999999997 89998875

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.67  E-value=1.9e-05  Score=75.82  Aligned_cols=46  Identities=26%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC
Q 018716           90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG  139 (351)
Q Consensus        90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G  139 (351)
                      +|+.+|+++..|..++.+..    ..+.+++|.++|||.++..+.+++..
T Consensus        67 tg~~~w~~al~L~~~l~~~~----d~~~~~~v~~l~~gi~~~~~~~a~~~  112 (262)
T KOG2497|consen   67 TGLSVWESALSLEADLRDKP----DLSSELTVEELGCDIALKHVLAARVP  112 (262)
T ss_pred             hccccchHHHHHHHHHhhCc----ccccccchHhhccCHHHHHHHHHhcc
Confidence            77889999999999999873    33789999999999999997777654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.66  E-value=0.00045  Score=63.52  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI  153 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL  153 (351)
                      -+|.||||||||.|-.--.+......+..+.|++++-+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v   49 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV   49 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH
Confidence            47899999999999776555542234789999998644

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.65  E-value=0.00024  Score=71.63  Aligned_cols=46  Identities=24%  Similarity=0.379  Sum_probs=38.0

Q ss_pred             CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.+|||++||+|..|+.++. .++.+|++.|+|+..++. ...|+++|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~-a~~N~~~N  104 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL-IKKNLELN  104 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            46899999999999999875 466789999999999865 45666666

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.64  E-value=0.0041  Score=56.93  Aligned_cols=47  Identities=23%  Similarity=0.297  Sum_probs=38.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQ  167 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~  167 (351)
                      .+|.+++|+|||||-+++.+++.+ ..+|++.|.++++++     .+++|...
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~-----~~~~N~~~   80 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALE-----LIERNAAR   80 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHH-----HHHHHHHH
Confidence            578899999999999999988655 468999999999985     35666653

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.61  E-value=0.00036  Score=71.83  Aligned_cols=53  Identities=26%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-----CCEEEEEcCChHHH
Q 018716          101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-----AGTVHFQDLSAETI  153 (351)
Q Consensus       101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-----a~~V~~TD~s~~vL  153 (351)
                      +.+.|.+..+......+++.||++|||+|.++.+++..+     +.+|++.+.|+...
T Consensus       170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~  227 (448)
T PF05185_consen  170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV  227 (448)
T ss_dssp             HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred             HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence            344555554333333468999999999999999887654     67999999999765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.59  E-value=0.0004  Score=70.21  Aligned_cols=40  Identities=13%  Similarity=0.126  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+..+||||||+|...+.+|.. ....+++.|+++.+++.
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~  161 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ  161 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence            35679999999999999988864 33589999999999865

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.57  E-value=0.00078  Score=68.80  Aligned_cols=47  Identities=19%  Similarity=0.166  Sum_probs=36.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      .+|.+|||+|||+|..++.++.. + ..+|++.|.++.+++. .+.|+..
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~-~~~n~~r  299 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKK-LQENAQR  299 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHH-HHHHHHH
Confidence            46889999999999999887753 2 3589999999999855 2344443

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00022  Score=67.62  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=30.3

Q ss_pred             CEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          119 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      +.++|+|||+|...+.++.. .++|++||.++.||+
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~   69 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLK   69 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHH
Confidence            38999999999888777765 679999999999985

>PHA03412 putative methyltransferase; Provisional

Probab=97.56  E-value=0.0009  Score=63.53  Aligned_cols=39  Identities=13%  Similarity=0.126  Sum_probs=32.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc----CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~----Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||+|||+|.+++.++..    +..+|++.|+++.+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~   91 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL   91 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence            4779999999999999988753    33589999999998864

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.55  E-value=0.0039  Score=58.53  Aligned_cols=148  Identities=18%  Similarity=0.262  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      +....+..+|.+.       ...|+|||+|.+.|.-++..+. .. ..+++.+|++++..+     ..+.|+...     
T Consensus        45 ~e~g~~L~~L~~~-------~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-----~A~~n~~~a-----  107 (219)
T COG4122          45 PETGALLRLLARL-------SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-----IARENLAEA-----  107 (219)
T ss_pred             hhHHHHHHHHHHh-------cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-----HHHHHHHHc-----
Confidence            4444555555544       4789999999999999998875 22 348999999999874     456677643     


Q ss_pred             cCCCCCCCCcccCCCCceeeee-ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYA-GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL  252 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~-gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~l  252 (351)
                                  .+..+|..+. |||-+.   ++                                              
T Consensus       108 ------------g~~~~i~~~~~gdal~~---l~----------------------------------------------  126 (219)
T COG4122         108 ------------GVDDRIELLLGGDALDV---LS----------------------------------------------  126 (219)
T ss_pred             ------------CCcceEEEEecCcHHHH---HH----------------------------------------------
Confidence                        1334566655 354331   10                                              


Q ss_pred             cCchhhhhccccccCCCCccEEEE-eccccCccCHHHHHHHHHHHcCCCCeEEEEEec--------c---ccccccchHH
Q 018716          253 SGSRAWERASEADQGEGGYDVILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK--------K---NYVGFNNAAR  320 (351)
Q Consensus       253 s~~~~W~~~~e~~~~~~~~DlILa-sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K--------~---~yfgv~gg~~  320 (351)
                                 . ...+.||+|.. +|    ...++..++.+..+|+ |+|++++-.=        .   .+--...+++
T Consensus       127 -----------~-~~~~~fDliFIDad----K~~yp~~le~~~~lLr-~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~  189 (219)
T COG4122         127 -----------R-LLDGSFDLVFIDAD----KADYPEYLERALPLLR-PGGLIVADNVLFGGRVADPSIRDARTQVRGVR  189 (219)
T ss_pred             -----------h-ccCCCccEEEEeCC----hhhCHHHHHHHHHHhC-CCcEEEEeecccCCccCCccchhHHHHHHHHH
Confidence                       0 12467888875 33    4567777777777887 8898876421        1   1111223578


Q ss_pred             HHHHhhhhcCceeeEEee
Q 018716          321 HLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       321 ~F~~~ve~~G~~~~~~v~  338 (351)
                      +|.+.+.++--+...++.
T Consensus       190 ~~~~~~~~~~~~~t~~lP  207 (219)
T COG4122         190 DFNDYLLEDPRYDTVLLP  207 (219)
T ss_pred             HHHHHHhhCcCceeEEEe
Confidence            899988887556666665

>PLN02366 spermidine synthase

Probab=97.54  E-value=0.0011  Score=65.03  Aligned_cols=39  Identities=15%  Similarity=0.096  Sum_probs=32.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++||++|||.|.....+++. +..+|++.|+++.|++.
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~  130 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDV  130 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHH
Confidence            4689999999999988777764 35689999999999865

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.51  E-value=0.0019  Score=65.76  Aligned_cols=58  Identities=12%  Similarity=0.047  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHH
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .+|..++..|.        ..+|.+|||+|||+|..++.++. .+..+|++.|.++.+++.+ ..|+.
T Consensus       225 ~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~-~~n~~  283 (426)
T TIGR00563       225 ASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRV-YENLK  283 (426)
T ss_pred             HHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHHHH
Confidence            45555555553        13678999999999999988775 4445899999999998652 34443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=9.6e-05  Score=65.35  Aligned_cols=49  Identities=24%  Similarity=0.375  Sum_probs=42.3

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHH
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ  167 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~  167 (351)
                      .++.||.+++||||+|.+++.++..++..|++.|++++.|+.+     .+|.+.
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf-----~rNaeE   93 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIF-----TRNAEE   93 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHH-----hhchHH
Confidence            5699999999999999999888878888999999999999764     556653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.49  E-value=0.00088  Score=68.53  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~  155 (351)
                      .+|.+|||+|||+|.-++.++..  +..+|++.|+++.+++.
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~  277 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL  277 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            46889999999999998877742  24589999999999865

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.47  E-value=0.00077  Score=64.32  Aligned_cols=48  Identities=15%  Similarity=0.159  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .+|.+|||+|||+|..++.++. .+ ...|++.|+++.+++. ++.|+.+|
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~-~~~n~~~~  119 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV-LIANINRC  119 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH-HHHHHHHc
Confidence            4788999999999999987764 32 3489999999999865 34555544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.45  E-value=0.00049  Score=65.96  Aligned_cols=55  Identities=15%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      +++.  .+++.+.+..    ...++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus        25 l~~~--~i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~   79 (272)
T PRK00274         25 LIDE--NILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPI   79 (272)
T ss_pred             CCCH--HHHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence            4554  3445555442    224678999999999999999887765 89999999999865

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.42  E-value=0.00063  Score=68.52  Aligned_cols=46  Identities=17%  Similarity=0.189  Sum_probs=38.1

Q ss_pred             CCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          118 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.+|||+-||+|..|+.++..  |+++|++.|+|+..++. +..|+++|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~-i~~N~~~N   92 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVES-IKNNVEYN   92 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            468999999999999999875  78899999999999854 34555555

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.41  E-value=0.002  Score=62.80  Aligned_cols=51  Identities=12%  Similarity=0.001  Sum_probs=38.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++.+.+..    ...++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        23 ~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~   73 (294)
T PTZ00338         23 LVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAE   73 (294)
T ss_pred             HHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHH
Confidence            3444555442    23477899999999999998888765 479999999998854

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.36  E-value=0.0011  Score=64.12  Aligned_cols=73  Identities=16%  Similarity=0.117  Sum_probs=55.5

Q ss_pred             ccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHh
Q 018716           93 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA  168 (351)
Q Consensus        93 k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~  168 (351)
                      .-||.- .+++++.+...+ ..-+++..+||+|||+|..++.++. .+...|+++|.++..+.+ +..|+++|...+
T Consensus       126 PRpETE-E~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L-a~eN~qr~~l~g  199 (328)
T KOG2904|consen  126 PRPETE-EWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL-AKENAQRLKLSG  199 (328)
T ss_pred             cCccHH-HHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH-HHHHHHHHhhcC
Confidence            467776 677777665432 2336677999999999999998774 456789999999998854 688999887654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.25  E-value=0.0053  Score=56.28  Aligned_cols=50  Identities=32%  Similarity=0.522  Sum_probs=42.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .|.++|...      .+.|.++|||=||+|.+|+-|+..|++++++.|.|...+..
T Consensus        32 alFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~   81 (187)
T COG0742          32 ALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI   81 (187)
T ss_pred             HHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence            455666431      37999999999999999999999999999999999998854

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.08  E-value=0.0015  Score=64.64  Aligned_cols=47  Identities=15%  Similarity=0.079  Sum_probs=35.8

Q ss_pred             CCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .+.+|||||||+|.+...++ .....+++++|+++.+++. ...|+..|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~-A~~Nv~~N  161 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALAS-AQAIISAN  161 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHH-HHHHHHhc
Confidence            46799999999986655444 3333489999999999965 56777777

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.05  E-value=0.0021  Score=60.31  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~~vL~  154 (351)
                      ..-.+|.|||||+|..+-.++ +.....+++.|-|++||+
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla   68 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLA   68 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHH
Confidence            456799999999999987766 455669999999999985

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.95  E-value=0.016  Score=55.37  Aligned_cols=138  Identities=15%  Similarity=0.234  Sum_probs=84.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+-++|||||+++|.-++.++.. + ..+|+..|.+++..+. .    +.|+..+                 .+..+|++
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-A----r~~~~~a-----------------g~~~~I~~  135 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-G----LPVIQKA-----------------GVAHKIDF  135 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-H----HHHHHHC-----------------CCCCceEE
Confidence            46789999999999999988752 2 2489999999987643 2    3333321                 13457888


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..|+..+.   +....                                                     +.....++||+
T Consensus       136 ~~G~a~e~---L~~l~-----------------------------------------------------~~~~~~~~fD~  159 (247)
T PLN02589        136 REGPALPV---LDQMI-----------------------------------------------------EDGKYHGTFDF  159 (247)
T ss_pred             EeccHHHH---HHHHH-----------------------------------------------------hccccCCcccE
Confidence            77764331   11000                                                     00001357998


Q ss_pred             EEE-eccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc----------------ccchHHHHHHhhhhcCceeeEE
Q 018716          274 ILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------------FNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       274 ILa-sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg----------------v~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      |.. +|    ...+...++.+.++|+ |+|++.+= --...|                ...++++|.+.+.++--|.+.+
T Consensus       160 iFiDad----K~~Y~~y~~~~l~ll~-~GGviv~D-Nvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~l  233 (247)
T PLN02589        160 IFVDAD----KDNYINYHKRLIDLVK-VGGVIGYD-NTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICM  233 (247)
T ss_pred             EEecCC----HHHhHHHHHHHHHhcC-CCeEEEEc-CCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            876 33    6667888888888886 88875532 111111                0113668888888776666665


Q ss_pred             e
Q 018716          337 I  337 (351)
Q Consensus       337 v  337 (351)
                      +
T Consensus       234 l  234 (247)
T PLN02589        234 L  234 (247)
T ss_pred             E
Confidence            4

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.92  E-value=0.0046  Score=58.78  Aligned_cols=51  Identities=18%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++.+.+..    ...++.+|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus        16 ~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~   66 (258)
T PRK14896         16 RVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEF   66 (258)
T ss_pred             HHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence            4455555542    23468899999999999999998775 489999999998864

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.88  E-value=0.0058  Score=56.78  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCC-CEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~Ga-~~V~~TD~s~~vL~~  155 (351)
                      .-+|.+|||+|||+|..+-.++. .|. ..|+..|.++.+.+.
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~  112 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER  112 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence            45889999999999999877664 453 369999999988754

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.0063  Score=56.69  Aligned_cols=54  Identities=20%  Similarity=0.132  Sum_probs=38.8

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ++-.+...|...+    ..-++.+|||+|||+|..+-.+++... +|+..+..++..+.
T Consensus        56 s~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~  109 (209)
T COG2518          56 SAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQ  109 (209)
T ss_pred             cCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHH
Confidence            3334444444442    345789999999999999888887643 89999999976643

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.82  E-value=0.02  Score=55.14  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-c------CCCEEEEEcCChHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-K------GAGTVHFQDLSAETI  153 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~------Ga~~V~~TD~s~~vL  153 (351)
                      ..+++|||++||||-...-+.. .      +.++|+..|+|++||
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL  143 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML  143 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence            5679999999999998877654 1      237899999999998

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.78  E-value=0.03  Score=52.03  Aligned_cols=62  Identities=15%  Similarity=0.250  Sum_probs=43.7

Q ss_pred             CCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccccccc--cchHHHHHHhhhhc
Q 018716          267 GEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF--NNAARHLRSLVDEE  329 (351)
Q Consensus       267 ~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv--~gg~~~F~~~ve~~  329 (351)
                      ....||.|+++-++--.  +..+.|++...++|+ ++|..++-..-.|-|.  ..+-.+|-..++++
T Consensus        99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r  164 (204)
T PF06080_consen   99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSR  164 (204)
T ss_pred             CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence            46789999999998754  457789999999997 8888776533233232  34667777777664

The function of this family is unknown.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.78  E-value=0.034  Score=53.83  Aligned_cols=160  Identities=19%  Similarity=0.280  Sum_probs=92.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..+.+||-=|||.|-+..-+|..|. .+.+.+.|--|+   +..|..+|......                 +-.+..+.
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~~~~~~-----------------~~~I~Pf~  113 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNHCSQPN-----------------QFTIYPFV  113 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcccCCCC-----------------cEEEecce
Confidence            4567999999999999998888898 899999999987   34788877532100                 01122223


Q ss_pred             ccCCCCcc---hhhhhc-ccc--c-cccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCC
Q 018716          196 GDWEELPT---VLSVVR-NDV--S-EVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGE  268 (351)
Q Consensus       196 gdW~~~~~---~l~~~~-~d~--~-~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~  268 (351)
                      ..|....+   .+..+. .|.  . ....+-+++++..||.+-.                              ......
T Consensus       114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y------------------------------~~~~~~  163 (270)
T PF07942_consen  114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVY------------------------------GPDENK  163 (270)
T ss_pred             ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEec------------------------------CCcccC
Confidence            33333211   000000 000  0 0112334555555553311                              001235


Q ss_pred             CCccEEEEeccccCccCHHHHH---HHHHHHcCCCCeEEEEE--ecccccc---------ccchHHHHHHhhhhcCc
Q 018716          269 GGYDVILLTEIPYSVTSLKKLY---LLIKKCLRPPYGVVYLA--TKKNYVG---------FNNAARHLRSLVDEEGI  331 (351)
Q Consensus       269 ~~~DlILasDviY~~~~~~~L~---~~l~~~L~~p~gv~ylA--~K~~yfg---------v~gg~~~F~~~ve~~G~  331 (351)
                      +.||.|+.+   |+.+..++++   ++|.++|+ |+| .||=  -=.+.|.         +.=+.++.+..+++.|+
T Consensus       164 ~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLk-pgG-~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF  235 (270)
T PF07942_consen  164 GSFDVVVTC---FFIDTAENIIEYIETIEHLLK-PGG-YWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGF  235 (270)
T ss_pred             CcccEEEEE---EEeechHHHHHHHHHHHHHhc-cCC-EEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCC
Confidence            799999998   8888777655   56667887 888 4442  2222221         11257888899999897

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.77  E-value=0.0057  Score=57.64  Aligned_cols=66  Identities=17%  Similarity=0.041  Sum_probs=47.5

Q ss_pred             CCCCCCCCcccchhH---HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           84 ISSKPDGFLKCWESS---IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        84 ~~g~y~gG~k~Weas---~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ...+|..+-.-|+..   -.|.+|+....     .-++.|||..|||.|.-.+.++..|. +|++.|+++..++.
T Consensus        12 W~~rw~~~~~~f~~~~pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~   80 (226)
T PRK13256         12 WLDRWQNDDVGFCQESPNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLS   80 (226)
T ss_pred             HHHHHhcCCCCCccCCCCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHH
Confidence            334444444455332   46667765431     12578999999999999999999998 69999999988754

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.75  E-value=0.019  Score=54.87  Aligned_cols=42  Identities=19%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..|.++.+||+||-+|.+++.+++ .|+..|.+.|+++..++.
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~   97 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQR   97 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHH
Confidence            458999999999999999999886 788899999999966643

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.68  E-value=0.0086  Score=56.57  Aligned_cols=39  Identities=18%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~   66 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEI   66 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence            4678999999999999999887764 79999999998754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02823 spermine synthase

Probab=96.63  E-value=0.043  Score=54.60  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++||.||+|.|.....+++. +..+|++.|+++++++.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~l  142 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDF  142 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHH
Confidence            4579999999999888777663 46789999999999865

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.57  E-value=0.05  Score=49.68  Aligned_cols=36  Identities=28%  Similarity=0.527  Sum_probs=29.1

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHH
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETI  153 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL  153 (351)
                      +.+++|+|+|.|+|||.++.. ...++++.|-+..=.
T Consensus        49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~   85 (184)
T PF02527_consen   49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV   85 (184)
T ss_dssp             CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH
T ss_pred             CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH
Confidence            338999999999999988753 445899999887644

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.57  E-value=0.016  Score=54.01  Aligned_cols=37  Identities=24%  Similarity=0.157  Sum_probs=27.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  154 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~  154 (351)
                      ..++|+|+|+|+|..++.+++. ...++++.|. |++++
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~  137 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIE  137 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHC
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhh
Confidence            4569999999999999888753 3458999998 44653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=96.56  E-value=0.025  Score=54.49  Aligned_cols=39  Identities=13%  Similarity=-0.118  Sum_probs=33.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~  156 (351)
                      .-+|||=+|.|=|..-.-+++.. .+|++.|++++|++.+
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~  110 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSF  110 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHH
Confidence            45899999999998888888764 4999999999999764

>PHA01634 hypothetical protein

Probab=96.48  E-value=0.0057  Score=53.12  Aligned_cols=52  Identities=12%  Similarity=0.040  Sum_probs=45.1

Q ss_pred             CCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       113 ~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      ..++++|+|+++|++.|--+|+.++.||+.|++...++...+. ...|++.|.
T Consensus        24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~-~een~k~nn   75 (156)
T PHA01634         24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKK-WEEVCAYFN   75 (156)
T ss_pred             heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHH-HHHHhhhhe
Confidence            4678999999999999999999999999999999999976654 466777773

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.11  Score=49.95  Aligned_cols=47  Identities=23%  Similarity=0.306  Sum_probs=37.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ..+|+||||-|.|+|.++.+++. .| ..+|+.-|+.++.++. .+.|+.
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~-A~~Nl~  140 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKT-ARENLS  140 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHH-HHHHHH
Confidence            47999999999999999999884 33 3689999999998864 344444

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.40  E-value=0.0073  Score=55.85  Aligned_cols=49  Identities=22%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .+|.+|+|+-||.|-.++.+++ ..++.|++.|.||..++. +..|+++|-
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~-L~~Ni~lNk  149 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY-LKENIRLNK  149 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH-HHHHHHHcC
Confidence            4688999999999999999997 335689999999999976 468888874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.30  E-value=0.0061  Score=57.51  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=33.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ...-|||+|||+||.|-.+...| ..+++.|+|+.||+.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~   87 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ   87 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence            45689999999999998888778 489999999999965

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.06  E-value=0.064  Score=51.84  Aligned_cols=44  Identities=18%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             CCCCccEEEEecc-ccCc-cCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716          267 GEGGYDVILLTEI-PYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKN  311 (351)
Q Consensus       267 ~~~~~DlILasDv-iY~~-~~~~~L~~~l~~~L~~p~gv~ylA~K~~  311 (351)
                      ..++||+|++=.| ||.. +....+++.+...|+ |+|..+++.--.
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE~  244 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSET  244 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCcc
Confidence            4578999999886 4554 556789999999997 999999986544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.02  E-value=0.17  Score=48.79  Aligned_cols=60  Identities=22%  Similarity=0.173  Sum_probs=41.7

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-c-CCCEEEEEcCChHHHH
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIR  154 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~-Ga~~V~~TD~s~~vL~  154 (351)
                      .++...-+..+.+.++.....|..++|||+|||.|-...++.. . ...++++.|.|+.|++
T Consensus        11 ~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~   72 (274)
T PF09243_consen   11 MPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLE   72 (274)
T ss_pred             hhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHH
Confidence            3444555555555555444578899999999999865544432 2 3568999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.88  E-value=0.28  Score=46.93  Aligned_cols=48  Identities=25%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      ...+|.+|||-|.|+|.++++++. .| ..+|+--|+.++..+     +.+.|+.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~-----~A~~n~~   86 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAE-----KARKNFE   86 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHH-----HHHHHHH
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHH-----HHHHHHH
Confidence            346899999999999999999885 22 358999999999874     3455554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.81  E-value=0.018  Score=48.81  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=34.7

Q ss_pred             EEEEEcccCCHHHHHHHHcCCC-EEEEEcCChHHHHhhhHHHHHHH
Q 018716          120 RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       120 rVLELGcGtGL~gl~aa~~Ga~-~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .|||+|||.|..++.++..+.. +|++.|.++.+++.+ +.|+..|
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l-~~~~~~n   45 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEIL-EENVKLN   45 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHH-HHHHHHc
Confidence            4899999999999988876643 899999999988542 4555544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.72  E-value=0.1  Score=48.47  Aligned_cols=39  Identities=18%  Similarity=0.102  Sum_probs=27.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~  154 (351)
                      -++...+|||||.|-+-+.+++ .+.++.++.++.+...+
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~   80 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHD   80 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHH
Confidence            3577999999999999887774 67778999999997653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.62  E-value=0.64  Score=44.38  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=90.5

Q ss_pred             CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716           88 PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus        88 y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      |.-+..+++.++.=+.+|.+.     .++.||+||=+| =-=|.||++++.+ .++|+..|+++.+++.     |.....
T Consensus        20 ~DQ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~f-----I~~~a~   88 (243)
T PF01861_consen   20 LDQGYATPETTLRRAALMAER-----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDF-----INRVAE   88 (243)
T ss_dssp             GT---B-HHHHHHHHHHHHHT-----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH-----HHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhc-----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHH-----HHHHHH
Confidence            344567899999999999876     568999999999 5568899888643 5699999999988854     232222


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716          167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  246 (351)
Q Consensus       167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~  246 (351)
                      ..                 .+  .++.+..|....                                             
T Consensus        89 ~~-----------------gl--~i~~~~~DlR~~---------------------------------------------  104 (243)
T PF01861_consen   89 EE-----------------GL--PIEAVHYDLRDP---------------------------------------------  104 (243)
T ss_dssp             HH-----------------T----EEEE---TTS----------------------------------------------
T ss_pred             Hc-----------------CC--ceEEEEeccccc---------------------------------------------
Confidence            11                 01  244433332221                                             


Q ss_pred             cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhh
Q 018716          247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV  326 (351)
Q Consensus       247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~v  326 (351)
                           |+.           .-.++||+++ +|=.|-.+.+..++.-=-.+|+.+++..|++....-- ...-..++-+.+
T Consensus       105 -----LP~-----------~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~~~Q~~l  166 (243)
T PF01861_consen  105 -----LPE-----------ELRGKFDVFF-TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWLEVQRFL  166 (243)
T ss_dssp             -------T-----------TTSS-BSEEE-E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHHHHHHHH
T ss_pred             -----CCH-----------HHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHHHHHHHH
Confidence                 110           1357899876 6899998888887776666788677788988544310 001123455666


Q ss_pred             hhcCceeeEEeeecCCccee
Q 018716          327 DEEGIFGAHLIKEMTDRDIW  346 (351)
Q Consensus       327 e~~G~~~~~~v~e~~d~~i~  346 (351)
                      -+.|++-..++..+..-+-|
T Consensus       167 ~~~gl~i~dii~~Fn~Y~ga  186 (243)
T PF01861_consen  167 LEMGLVITDIIPDFNRYEGA  186 (243)
T ss_dssp             HTS--EEEEEEEEEEEB---
T ss_pred             HHCCcCHHHHHhhhcccccc
Confidence            67899888888777654444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.46  E-value=0.04  Score=50.06  Aligned_cols=61  Identities=21%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716           90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  155 (351)
Q Consensus        90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~  155 (351)
                      -|. +-++|-.+|+-|.+.+    ..-.|+-|||+|.|||...-+....|  ...+++.+++++....
T Consensus        26 VGa-I~PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~   88 (194)
T COG3963          26 VGA-ILPSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH   88 (194)
T ss_pred             eee-ecCCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH
Confidence            443 5677778999998874    33478899999999999998888766  3579999999998854

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.45  E-value=0.06  Score=51.38  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=27.6

Q ss_pred             EEEEEcccCCHHHHHHHHcC---CCEEEEEcCChHHHHh
Q 018716          120 RVLELSCGYGLPGIFACLKG---AGTVHFQDLSAETIRC  155 (351)
Q Consensus       120 rVLELGcGtGL~gl~aa~~G---a~~V~~TD~s~~vL~~  155 (351)
                      +|||+|||.|-...-+.+-.   .-.|++.|+++..++.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~  112 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL  112 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence            79999999997766555421   1379999999998854

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.41  E-value=0.16  Score=50.88  Aligned_cols=35  Identities=20%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCCh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  150 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~  150 (351)
                      ..+|+++|||||++|.-+-.+...|+ +|++.|..+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~  243 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP  243 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence            46899999999999999999888888 899999665

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.32  E-value=0.04  Score=52.38  Aligned_cols=54  Identities=22%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE  151 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~  151 (351)
                      +-.+++-|.+.|.+.    ..+++|+++||+|+.||-.+-++...||++|++.|..-.
T Consensus        60 VSRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~  113 (245)
T COG1189          60 VSRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG  113 (245)
T ss_pred             cccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence            456788899988876    477999999999999999999999999999999998764

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=94.90  E-value=0.11  Score=44.67  Aligned_cols=55  Identities=15%  Similarity=0.037  Sum_probs=38.3

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-----cCCCEEEEEcCChHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-----KGAGTVHFQDLSAETIR  154 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-----~Ga~~V~~TD~s~~vL~  154 (351)
                      .+++++....+......+..+|+|+|||.|.+|.+++.     ....+|++.|.++..++
T Consensus         8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~   67 (141)
T PF13679_consen    8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVE   67 (141)
T ss_pred             HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHH
Confidence            34455544332111235677999999999999998886     33458999999997654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=94.87  E-value=0.34  Score=44.40  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=28.8

Q ss_pred             CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      ...+||||||.|-.-+..|. .....+++.|+....+..
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~   56 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAK   56 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHH
Confidence            34899999999998888775 344689999999987754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=94.75  E-value=0.13  Score=50.08  Aligned_cols=43  Identities=21%  Similarity=0.464  Sum_probs=34.1

Q ss_pred             CCCccEEEEeccc-c-CccCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716          268 EGGYDVILLTEIP-Y-SVTSLKKLYLLIKKCLRPPYGVVYLATKKN  311 (351)
Q Consensus       268 ~~~~DlILasDvi-Y-~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~  311 (351)
                      .++||+|++-.++ | +++....+++.+..+|+ |+|..+++..-.
T Consensus       221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~sEs  265 (287)
T PRK10611        221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGHSEN  265 (287)
T ss_pred             CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeCccc
Confidence            4789999997665 4 44567889999999997 999988886543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=94.72  E-value=0.053  Score=51.65  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ....+++||||.|-+.-.+...|..+++.+|.+..|++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s  110 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS  110 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence            456899999999988877776778899999999999854

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=94.63  E-value=0.77  Score=43.57  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~  156 (351)
                      +.++||-||-|.|...-.+.+.. ..+|++.|+++.+++.+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a  116 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELA  116 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHH
Confidence            67899999999998776666543 57999999999998653

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=94.60  E-value=0.096  Score=52.26  Aligned_cols=65  Identities=22%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      -+.....|.+++.....     ..+.+||||=||+|..|+.+|.. +++|++.+.++.+++. ...|..+|.
T Consensus       178 N~~~~~~l~~~~~~~l~-----~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~-A~~Na~~N~  242 (352)
T PF05958_consen  178 NPEQNEKLYEQALEWLD-----LSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVED-ARENAKLNG  242 (352)
T ss_dssp             BHHHHHHHHHHHHHHCT-----T-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhh-----cCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHH-HHHHHHHcC
Confidence            34445566666665531     22338999999999999999976 4589999999998854 244555443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=94.48  E-value=0.12  Score=51.65  Aligned_cols=51  Identities=24%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      ...|.+|+|+=||.|-.++.+|+.|+.+|++.|+||..++. +..|+++|-.
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~-L~eNi~LN~v  236 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY-LKENIRLNKV  236 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH-HHHHHHhcCc
Confidence            35699999999999999999999998679999999999976 5788888853

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.13  E-value=0.14  Score=47.19  Aligned_cols=43  Identities=19%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             CCCCccEEEEeccc-cC-ccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          267 GEGGYDVILLTEIP-YS-VTSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       267 ~~~~~DlILasDvi-Y~-~~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      ..++||+|++-.|+ |. ++....+++.+..+|+ |+|..+++..-
T Consensus       133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE  177 (196)
T PF01739_consen  133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSE  177 (196)
T ss_dssp             ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT-
T ss_pred             ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCc
Confidence            46789999998874 44 4556789999999997 99999998644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=94.00  E-value=0.15  Score=45.89  Aligned_cols=60  Identities=30%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             CEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccC
Q 018716          119 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW  198 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW  198 (351)
                      +.|+|+-||.|.-.+..|+.. .+|++.|+++..+++     .+.|...--                 ...+|.|+.+||
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~-----a~hNa~vYG-----------------v~~~I~~i~gD~   57 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLEC-----AKHNAEVYG-----------------VADNIDFICGDF   57 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHH-----HHHHHHHTT------------------GGGEEEEES-H
T ss_pred             CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCcEEEEeCCH
Confidence            369999999999999999874 589999999998865     344544220                 134799999999


Q ss_pred             CCC
Q 018716          199 EEL  201 (351)
Q Consensus       199 ~~~  201 (351)
                      .+.
T Consensus        58 ~~~   60 (163)
T PF09445_consen   58 FEL   60 (163)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=93.98  E-value=0.089  Score=50.23  Aligned_cols=40  Identities=30%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      -+|.+|||-=-|.|-..+.++..||.+|+-.+.++.+|++
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeL  172 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLEL  172 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEe
Confidence            3799999999999999999999999999999999999865

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=93.71  E-value=0.0082  Score=56.23  Aligned_cols=53  Identities=15%  Similarity=0.005  Sum_probs=36.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ...++|.-.-  .......+++||||||-|-++...+-. ..+|++|+.|..|..+
T Consensus        97 QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~r  149 (288)
T KOG3987|consen   97 QFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDR  149 (288)
T ss_pred             HHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHH
Confidence            5556554331  112345689999999999998777643 4579999999888644

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=93.69  E-value=0.8  Score=49.88  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL  137 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~  137 (351)
                      ..||..|....   ...-.+..++|-.||+|-..|-+++
T Consensus       175 etlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~  210 (702)
T PRK11783        175 ENLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAM  210 (702)
T ss_pred             HHHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHH
Confidence            57777777652   1213578999999999999988765

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=93.26  E-value=0.22  Score=47.37  Aligned_cols=52  Identities=15%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+++.+.+.+.    ..++..|||+|+|+|..+..++..+ ++|++.++++.+.+.
T Consensus        16 ~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~   67 (262)
T PF00398_consen   16 PNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKH   67 (262)
T ss_dssp             HHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHH
T ss_pred             HHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHH
Confidence            456666666542    2378999999999999999998877 699999999987644

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.19  E-value=1.4  Score=41.59  Aligned_cols=64  Identities=25%  Similarity=0.437  Sum_probs=47.2

Q ss_pred             CCCCccEEEEeccccCccCHHHHHHHHH---HHcCCCCeE-----EEEE------eccccccccchHHHHHHhhhhcCce
Q 018716          267 GEGGYDVILLTEIPYSVTSLKKLYLLIK---KCLRPPYGV-----VYLA------TKKNYVGFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       267 ~~~~~DlILasDviY~~~~~~~L~~~l~---~~L~~p~gv-----~ylA------~K~~yfgv~gg~~~F~~~ve~~G~~  332 (351)
                      ..+.||+|..|=++-..+....=-+.++   ++|+ |+|.     .++.      ...||+    ....|.+.|+.-|+.
T Consensus       101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~----~~~~l~~im~~LGf~  175 (219)
T PF11968_consen  101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYM----TEERLREIMESLGFT  175 (219)
T ss_pred             cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhccccc----CHHHHHHHHHhCCcE
Confidence            3578999999999988877665444444   4576 7777     6665      456776    468999999999985


Q ss_pred             eeE
Q 018716          333 GAH  335 (351)
Q Consensus       333 ~~~  335 (351)
                      .++
T Consensus       176 ~~~  178 (219)
T PF11968_consen  176 RVK  178 (219)
T ss_pred             EEE
Confidence            554

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.18  E-value=0.23  Score=51.16  Aligned_cols=48  Identities=33%  Similarity=0.463  Sum_probs=39.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .++.+||||=||.|..|+.+|.. +.+|+++++++++++. ...|.++|.
T Consensus       292 ~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~-A~~NA~~n~  339 (432)
T COG2265         292 AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEA-AQENAAANG  339 (432)
T ss_pred             cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHH-HHHHHHHcC
Confidence            46789999999999999999964 5699999999999865 345555553

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=93.14  E-value=1.8  Score=38.94  Aligned_cols=52  Identities=27%  Similarity=0.245  Sum_probs=35.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC--CC--------EEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AG--------TVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G--a~--------~V~~TD~s~~vL~~  155 (351)
                      .||..|.+..    ..-++..|||-=||+|-.-|-++..+  ..        ++++.|+++.+++.
T Consensus        15 ~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~   76 (179)
T PF01170_consen   15 TLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRG   76 (179)
T ss_dssp             HHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHH
T ss_pred             HHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHH
Confidence            5666666653    12367799999999999988887643  22        38899999999854

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=93.00  E-value=0.24  Score=47.75  Aligned_cols=55  Identities=15%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      +++..+  .+.+.+..    ...++.+|||+|+|.|-++..++..++ +|++.++++.++..
T Consensus        13 L~d~~v--~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~   67 (259)
T COG0030          13 LIDKNV--IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEV   67 (259)
T ss_pred             ccCHHH--HHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHH
Confidence            555542  44444442    234578999999999999999998865 79999999987743

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=92.90  E-value=0.12  Score=48.25  Aligned_cols=58  Identities=29%  Similarity=0.361  Sum_probs=42.8

Q ss_pred             cccchh---HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           92 LKCWES---SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        92 ~k~Wea---s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..-|+.   +-.|.+++...     ..-++.|||.-|||.|.=.+.++..|. +|++.|+++..++.
T Consensus        14 ~~~w~~~~~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~   74 (218)
T PF05724_consen   14 QTPWDQGEPNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ   74 (218)
T ss_dssp             --TT--TTSTHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence            334655   46788888763     124567999999999999999998887 89999999988754

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=92.78  E-value=1.3  Score=43.17  Aligned_cols=37  Identities=19%  Similarity=0.120  Sum_probs=32.3

Q ss_pred             CEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          119 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      ++||-||-|.|...-.+++.. ..++++.|+++.+++.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~  115 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIEL  115 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHH
Confidence            799999999999888888754 5789999999999864

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=92.77  E-value=2.8  Score=39.48  Aligned_cols=59  Identities=14%  Similarity=0.222  Sum_probs=36.6

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      ++..|+++-+=-+--.+ +...+.--.+.|+ ++|..+||-=+.+|.   .+.+|.+.++.-|+
T Consensus       120 ~~svDv~VfcLSLMGTn-~~~fi~EA~RvLK-~~G~L~IAEV~SRf~---~~~~F~~~~~~~GF  178 (219)
T PF05148_consen  120 DESVDVAVFCLSLMGTN-WPDFIREANRVLK-PGGILKIAEVKSRFE---NVKQFIKALKKLGF  178 (219)
T ss_dssp             TT-EEEEEEES---SS--HHHHHHHHHHHEE-EEEEEEEEEEGGG-S----HHHHHHHHHCTTE
T ss_pred             CCceeEEEEEhhhhCCC-cHHHHHHHHheec-cCcEEEEEEecccCc---CHHHHHHHHHHCCC
Confidence            34456665543333333 3334444455787 999999997666675   68999999999997

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=92.49  E-value=0.41  Score=47.06  Aligned_cols=67  Identities=12%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHhhhhhcCCCCC-CCCEEEEEcccCC-HHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           96 ESSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~-~~krVLELGcGtG-L~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +.-.....||.+.+....... ...++||+|+|.- +..|..+. .|- ++++||+++..++. ...||..|
T Consensus        80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~-A~~nv~~N  149 (299)
T PF05971_consen   80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLES-ARENVERN  149 (299)
T ss_dssp             HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHH-HHHHHHHT
T ss_pred             chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHH-HHHHHHhc
Confidence            344566666666543222222 2569999999964 44555553 454 89999999999865 35666666

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=92.39  E-value=0.19  Score=47.10  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=27.9

Q ss_pred             CCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChH
Q 018716          118 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAE  151 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~  151 (351)
                      +++++|+|+|.|+||+.+|. ....+|++.|-+..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K  102 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK  102 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence            69999999999999998774 33346999997664

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=92.10  E-value=1  Score=42.79  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+|.|||++|-|.|+.--++-.....+-++...+++|++.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr  139 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR  139 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH
Confidence            5889999999999988777665555566788899999865

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=92.10  E-value=0.58  Score=44.16  Aligned_cols=37  Identities=16%  Similarity=0.046  Sum_probs=29.3

Q ss_pred             CEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          119 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+||||||.|-.-+..|.. ....+++.++...++..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~   87 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK   87 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence            58999999999888887764 34579999988777643

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=92.07  E-value=2.8  Score=32.35  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          269 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       269 ~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      ..||++ .+...+.......++..+.+.++ |+|.+++....
T Consensus       118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~  157 (257)
T COG0500         118 ASFDLV-ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLL  157 (257)
T ss_pred             CceeEE-eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            478999 55555444336777777777786 78888776443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=91.80  E-value=0.58  Score=43.43  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             EEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHh
Q 018716          121 VLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       121 VLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~  155 (351)
                      |.|+||-.|.++++++..|. .+++++|+++.-++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~   36 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEK   36 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            68999999999999998774 579999999998854

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=91.75  E-value=0.67  Score=40.75  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=32.8

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      .+.||+|+++-++-+.......++-+.+.|+ |+|.+++.
T Consensus        42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~   80 (160)
T PLN02232         42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSIL   80 (160)
T ss_pred             CCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence            4679999999888777778888888888997 88988765

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=91.61  E-value=5.5  Score=40.01  Aligned_cols=75  Identities=25%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHH
Q 018716           80 GSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVP  159 (351)
Q Consensus        80 ~~dl~~g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~  159 (351)
                      ..|.-..+|-.-- .-+  -.||+.|.+..    ...+|.+|||==||||-.-+-|.+.|+ +++++|++..|++-    
T Consensus       167 ~r~~~kRPf~~p~-s~~--P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~g----  234 (347)
T COG1041         167 KRDPEKRPFFRPG-SMD--PRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRG----  234 (347)
T ss_pred             hcCcccCCccCcC-CcC--HHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhh----
Confidence            4455444544321 112  36777777653    346889999999999999999999998 89999999999865    


Q ss_pred             HHHHHHHH
Q 018716          160 NVLANLEQ  167 (351)
Q Consensus       160 Nv~lN~~~  167 (351)
                       .+.|+..
T Consensus       235 -ak~Nl~~  241 (347)
T COG1041         235 -AKINLEY  241 (347)
T ss_pred             -hhhhhhh
Confidence             5666653

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=91.01  E-value=0.51  Score=46.95  Aligned_cols=58  Identities=24%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCEEEEEcCChHHHHhh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETIRCT  156 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~~Ga~~V~~TD~s~~vL~~~  156 (351)
                      -|=-++.+..++....    ...++.+|||||||-|. +.=. ...+...++++|++.+.++.+
T Consensus        43 NwvKs~LI~~~~~~~~----~~~~~~~VLDl~CGkGGDL~Kw-~~~~i~~~vg~Dis~~si~ea  101 (331)
T PF03291_consen   43 NWVKSVLIQKYAKKVK----QNRPGLTVLDLCCGKGGDLQKW-QKAKIKHYVGIDISEESIEEA  101 (331)
T ss_dssp             HHHHHHHHHHHCHCCC----CTTTT-EEEEET-TTTTTHHHH-HHTT-SEEEEEES-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh----ccCCCCeEEEecCCCchhHHHH-HhcCCCEEEEEeCCHHHHHHH
Confidence            5666655555443221    11278899999999664 3333 334678999999999888653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=91.00  E-value=0.16  Score=47.18  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=39.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      ....+-|||+|+|.++++|+.. +.+|++...+|...++ ...|+..|..
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~-a~eN~~v~g~   79 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARL-AEENLHVPGD   79 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHH-hhhcCCCCCC
Confidence            3467899999999999999987 7899999999987755 4667655543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=90.67  E-value=4.5  Score=40.39  Aligned_cols=48  Identities=15%  Similarity=0.083  Sum_probs=37.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA  168 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~  168 (351)
                      ..-+||-=|||.|-+..-++..|. ++-+-..+-.|+-   -.+..+|..+.
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli---~S~FiLN~~~~  197 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI---CSSFILNYCKQ  197 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH---HHHHHHHhhcc
Confidence            345899999999999998888776 5666677777773   37888998643

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=90.63  E-value=0.68  Score=45.19  Aligned_cols=40  Identities=18%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .-+...|||+|-|||.++..+...|+ +|++.++++.|+..
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvae   95 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAE   95 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHH
Confidence            45677999999999999999988875 89999999998754

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=90.41  E-value=1  Score=47.22  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++..|-+++....    ..-.++.++|+=||||+.|+.+++ ++++|++..++++.++. ...|.+.|
T Consensus       367 ~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~d-A~~nA~~N  428 (534)
T KOG2187|consen  367 AAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVED-AEKNAQIN  428 (534)
T ss_pred             HHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcch-hhhcchhc
Confidence            4456666666653    334668999999999999999986 57899999999998865 24455444

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=87.78  E-value=6.6  Score=38.35  Aligned_cols=64  Identities=19%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEE
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +...||++-+=-+-- ..+..++.-..+.|+ ++|.+|||-=+.+|.   .+..|.+.+...||...+.
T Consensus       226 d~svDvaV~CLSLMg-tn~~df~kEa~RiLk-~gG~l~IAEv~SRf~---dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  226 DESVDVAVFCLSLMG-TNLADFIKEANRILK-PGGLLYIAEVKSRFS---DVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             cCcccEEEeeHhhhc-ccHHHHHHHHHHHhc-cCceEEEEehhhhcc---cHHHHHHHHHHcCCeeeeh
Confidence            344555544322221 223444555666787 999999997766674   4566999999999865553

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=87.75  E-value=0.64  Score=48.11  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             EEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       120 rVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      -||++|.||||+++.|++.|+..|++.+.=..|..+
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~  104 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDL  104 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHH
Confidence            799999999999999999999999998866656654

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=87.31  E-value=1.3  Score=39.25  Aligned_cols=51  Identities=24%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhhhhhcCC-CCC-CCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChH
Q 018716           97 SSIDLVNVLKHEIRDGQ-LSF-RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE  151 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~-~~~-~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~  151 (351)
                      |+.-|.+.+...    . ... .+.+||||||+.|--+-+++..+  ..+|++.|..+.
T Consensus         5 a~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    5 AAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            444555555543    2 222 45899999999999998888766  568999999874

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=86.62  E-value=6.4  Score=40.17  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=32.9

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      -.+||-||-|-|+.-.-+.+. +..+|+..|.+|.|++..
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela  329 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA  329 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHh
Confidence            458999999999988777765 367999999999999763

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=86.44  E-value=2.1  Score=44.81  Aligned_cols=44  Identities=14%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCC---CEEEEEcccCCHHHHHHHHcCC
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRG---KRVLELSCGYGLPGIFACLKGA  140 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~---krVLELGcGtGL~gl~aa~~Ga  140 (351)
                      ...++...++.|.+.+..   ...+   ..+||+|||+|..|-++...+.
T Consensus        94 F~~Ga~~Yid~i~~~~~~---~~~~g~iR~~LDvGcG~aSF~a~l~~r~V  140 (506)
T PF03141_consen   94 FPHGADHYIDQIAEMIPL---IKWGGGIRTALDVGCGVASFGAYLLERNV  140 (506)
T ss_pred             ccCCHHHHHHHHHHHhhc---cccCCceEEEEeccceeehhHHHHhhCCc
Confidence            455676777777766421   1222   3789999999999988887765

; GO: 0008168 methyltransferase activity

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=85.84  E-value=2.1  Score=42.03  Aligned_cols=40  Identities=13%  Similarity=-0.026  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~  155 (351)
                      -++..+||.+||.|--+..++...  ..+|++.|.++++++.
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~   59 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA   59 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence            357799999999999999888653  3589999999999864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=85.84  E-value=4.2  Score=42.68  Aligned_cols=38  Identities=16%  Similarity=0.062  Sum_probs=30.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  154 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~  154 (351)
                      .+..+||||||.|-.-+..|.. ....+++.|+....+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~  385 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA  385 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH
Confidence            4668999999999888777754 3457999999887664

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.59  E-value=1.1  Score=44.55  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=34.2

Q ss_pred             CCCCEEEEEccc-CCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCG-YGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcG-tGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      -.|.+||=+||| .||..+.+|+ .|+++|+++|..+.-|+.
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~  209 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLEL  209 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHH
Confidence            468899999999 4998888775 799999999999987654

>PRK10742 putative methyltransferase; Provisional

Probab=83.60  E-value=2.6  Score=40.50  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             EEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716          120 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       120 rVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      +|||+=||+|-.++.++..|+. |++.+.++.+..+ +..|+.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaal-L~dgL~  131 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAAL-LDDGLA  131 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHH-HHHHHH
Confidence            8999999999999999988984 9999999976643 344444

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=82.96  E-value=3.3  Score=39.90  Aligned_cols=60  Identities=18%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--------cCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--------KGAGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--------~Ga~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      ..++++|....    ....+.+|+|-.||+|-.-+.+..        ....++++.|+++.++.. +.-|+.+
T Consensus        32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l-a~~nl~l   99 (311)
T PF02384_consen   32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL-AKLNLLL   99 (311)
T ss_dssp             HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH-HHhhhhh
Confidence            35666666654    234677999999999988777664        234589999999998855 3344443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=81.70  E-value=2.7  Score=44.02  Aligned_cols=39  Identities=15%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-----C----CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-----G----AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-----G----a~~V~~TD~s~~vL~~  155 (351)
                      ...+|||.+||+|...+.++..     +    ...+++.|+++..++.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~   78 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR   78 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence            5579999999999988877631     1    1478999999998854

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=81.55  E-value=3.5  Score=40.50  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHH
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETI  153 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL  153 (351)
                      .++.||+|+-+| ---|.|+++++-| +++|...|+++..+
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli  188 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI  188 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH
Confidence            468999999999 7789999999866 67899999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	4e-10
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	7e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 59.1 bits (142), Expect = 4e-10
 Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 12/121 (9%)

Query: 92  LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE 151
              W  +      L   +        GK V EL  G GL  I A L GA  V   D    
Sbjct: 58  SHVWSGAR----ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD- 112

Query: 152 TIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRND 211
                  P +L +LE      +    SS T  R +     + +    + L     + R  
Sbjct: 113 -------PEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQ 165

Query: 212 V 212
           V
Sbjct: 166 V 166

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 22/90 (24%)

Query: 113 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ 172
           +        +++  G G   I    +   ++   D S                E A +  
Sbjct: 39  RFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHM------------NEIALKNI 86

Query: 173 SRQPESSLTPSRQTLAPSVHFYAGDWEELP 202
           +             L   +    GD   +P
Sbjct: 87  ADAN----------LNDRIQIVQGDVHNIP 106

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 26/87 (29%)

Query: 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 175
           F  K VL+L CG+G   I+A   GA  V   DLS               L +A+ + +  
Sbjct: 43  FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERM------------LTEAKRKTT-- 88

Query: 176 PESSLTPSRQTLAPSVHFYAGDWEELP 202
                       +P V +     E++ 
Sbjct: 89  ------------SPVVCYEQKAIEDIA 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.72
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.25
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.22
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.21
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.19
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.17
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.16
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.16
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.16
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.12
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.12
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.11
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.11
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.11
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.11
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.11
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.08
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.04
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.03
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.03
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.03
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.03
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.02
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.02
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.01
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.0
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.0
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.99
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.99
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.99
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.99
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.99
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.98
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.98
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.98
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.97
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.97
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.95
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.95
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.95
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.95
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.95
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.94
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.94
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.94
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.94
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.94
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.94
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.93
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.92
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.92
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.92
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.92
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.91
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.91
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.91
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.91
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.9
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.9
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.89
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.89
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.89
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.88
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.88
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.88
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.87
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.87
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.86
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.86
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.85
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.85
3ocj_A	305	Putative exported protein; structural genomics, PS	98.84
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.83
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.83
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.82
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.81
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.81
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.81
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.81
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.8
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.8
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.8
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.79
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.79
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.79
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.79
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.78
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.77
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.77
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.76
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.76
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.76
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.76
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.76
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.76
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.75
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.75
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.75
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.75
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.75
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.75
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.74
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.74
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.74
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.73
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.73
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.72
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.72
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.71
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.71
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.71
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.71
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.71
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.71
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.71
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.7
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.69
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.69
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.69
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.69
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.68
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.68
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.67
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.66
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.65
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.65
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.65
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.64
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.64
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.64
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.64
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.63
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.63
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.62
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.62
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.62
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.62
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.61
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.59
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.58
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.57
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.57
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.57
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.57
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.57
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.57
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.57
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.56
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.56
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.55
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.54
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.54
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.53
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.53
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.52
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.52
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.52
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.52
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.52
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.52
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.49
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.49
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.49
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.48
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.48
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.47
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.47
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.46
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.46
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.46
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.44
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.44
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.44
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.42
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.42
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.41
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.4
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.4
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.37
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.36
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.35
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.35
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.35
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.34
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.34
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.33
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.33
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.32
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.31
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.31
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.31
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.31
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.3
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.29
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.28
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.25
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.23
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.2
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.19
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.17
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.16
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.16
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.16
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.14
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.13
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.13
2o07_A	304	Spermidine synthase; structural genomics, structur	98.13
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.12
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.07
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.05
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.05
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.04
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.0
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.99
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.98
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.97
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.97
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.96
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.96
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.94
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.93
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.93
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.9
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.9
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.85
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.83
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.83
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.82
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.81
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.81
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.8
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.8
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.79
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.78
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.77
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.73
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.71
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.7
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.56
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.49
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.44
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.42
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.41
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.4
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.35
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.3
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.2
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.11
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.06
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.97
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.84
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.81
3lkd_A	542	Type I restriction-modification system methyltrans	96.74
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	96.74
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.65
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.63
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.63
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.47
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.41
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.37
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.33
3khk_A	544	Type I restriction-modification system methylation	96.33
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.22
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	95.86
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.5
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.27
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	94.7
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	94.4
2oo3_A	283	Protein involved in catabolism of external DNA; st	93.87
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	90.54
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	90.53
3ufb_A	530	Type I restriction-modification system methyltran	89.03
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	88.79
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	88.14
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	86.7
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	85.36
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	85.21
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	84.66
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	82.53
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	81.56
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	80.57

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.72  E-value=1.1e-16  Score=150.96  Aligned_cols=172  Identities=21%  Similarity=0.239  Sum_probs=116.2

Q ss_pred             CcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcC-ChHHHHhhhHHHHHHHHHHhh
Q 018716           91 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL-SAETIRCTTVPNVLANLEQAR  169 (351)
Q Consensus        91 G~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~-s~~vL~~~t~~Nv~lN~~~~~  169 (351)
                      |..+|+++..|++++....    ...++++|||||||+|..++.++..|+.+|+++|+ ++.+++. .+.|+.+|.... 
T Consensus        57 g~~~~~~~~~l~~~l~~~~----~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~-a~~n~~~N~~~~-  130 (281)
T 3bzb_A           57 TSHVWSGARALADTLCWQP----ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNS-LESNIREHTANS-  130 (281)
T ss_dssp             -----CHHHHHHHHHHHCG----GGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHH-HHHHHHTTCC---
T ss_pred             CceeecHHHHHHHHHHhcc----hhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHH-HHHHHHHhhhhh-
Confidence            4579999999999998763    23578999999999999999999888779999999 8999854 455664442100 


Q ss_pred             hhhccCCCCCCCCcccCCCCceeeeeccCCCCcc-hhhhhccccccccccccccccccccccCCCCCCCcccccCCcccc
Q 018716          170 ERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPT-VLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRR  248 (351)
Q Consensus       170 ~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~-~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~  248 (351)
                         .     .+..   ....++++..++|+.... +..                                          
T Consensus       131 ---~-----~~~~---~~~~~v~~~~~~~~~~~~~~~~------------------------------------------  157 (281)
T 3bzb_A          131 ---C-----SSET---VKRASPKVVPYRWGDSPDSLQR------------------------------------------  157 (281)
T ss_dssp             -------------------CCCEEEECCTTSCTHHHHH------------------------------------------
T ss_pred             ---c-----cccc---CCCCCeEEEEecCCCccHHHHh------------------------------------------
Confidence               0     0000   001357787888887321 000                                          


Q ss_pred             cccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCC--C--CeEEEEEeccccccccchHHHHHH
Q 018716          249 SRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRP--P--YGVVYLATKKNYVGFNNAARHLRS  324 (351)
Q Consensus       249 ~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~--p--~gv~ylA~K~~yfgv~gg~~~F~~  324 (351)
                                      .....+||+|+++|++|+....+.+++.++++|+.  |  +|++|+++..++........+|++
T Consensus       158 ----------------~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~  221 (281)
T 3bzb_A          158 ----------------CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFR  221 (281)
T ss_dssp             ----------------HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHH
T ss_pred             ----------------hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHH
Confidence                            00246899999999999999999999999999961  5  899998876665443445688999


Q ss_pred             hhhhcCceeeEEe
Q 018716          325 LVDEEGIFGAHLI  337 (351)
Q Consensus       325 ~ve~~G~~~~~~v  337 (351)
                      .+++.|.|....+
T Consensus       222 ~l~~~G~f~v~~~  234 (281)
T 3bzb_A          222 LVNADGALIAEPW  234 (281)
T ss_dssp             HHHHSTTEEEEEE
T ss_pred             HHHhcCCEEEEEe
Confidence            9999993355544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.25  E-value=7.5e-11  Score=107.36  Aligned_cols=103  Identities=24%  Similarity=0.367  Sum_probs=79.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ..++++|||+|||+|..+..++..|..+|+++|+++.+++..     +.+..                     ..++.+.
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-----~~~~~---------------------~~~~~~~   95 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA-----KRKTT---------------------SPVVCYE   95 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH-----HHHCC---------------------CTTEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHH-----HHhhc---------------------cCCeEEE
Confidence            357899999999999999999888877999999999987531     21210                     1246665


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|....+                                                               ...+.||+|
T Consensus        96 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v  112 (253)
T 3g5l_A           96 QKAIEDIA---------------------------------------------------------------IEPDAYNVV  112 (253)
T ss_dssp             ECCGGGCC---------------------------------------------------------------CCTTCEEEE
T ss_pred             EcchhhCC---------------------------------------------------------------CCCCCeEEE
Confidence            55442210                                                               124689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ++..+++.......+++.+.++|+ |+|++++.
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~  144 (253)
T 3g5l_A          113 LSSLALHYIASFDDICKKVYINLK-SSGSFIFS  144 (253)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEE
Confidence            999999999999999999999997 89999986

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.22  E-value=1.1e-10  Score=102.23  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      ++....+.+.+.+.+.. ....++++|||+|||+|..++.++..++.+|++.|+++.+++. .+.|+..|.         
T Consensus        23 rp~~~~~~~~l~~~l~~-~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~---------   91 (189)
T 3p9n_A           23 RPTTDRVRESLFNIVTA-RRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAV-IARNIEALG---------   91 (189)
T ss_dssp             ---CHHHHHHHHHHHHH-HSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHT---------
T ss_pred             ccCcHHHHHHHHHHHHh-ccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHH-HHHHHHHcC---------
Confidence            44444555555444321 1225789999999999999998777787799999999999865 234443331         


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                                  + .++++..+|+.+...                                                   
T Consensus        92 ------------~-~~v~~~~~d~~~~~~---------------------------------------------------  107 (189)
T 3p9n_A           92 ------------L-SGATLRRGAVAAVVA---------------------------------------------------  107 (189)
T ss_dssp             ------------C-SCEEEEESCHHHHHH---------------------------------------------------
T ss_pred             ------------C-CceEEEEccHHHHHh---------------------------------------------------
Confidence                        1 256776666533110                                                   


Q ss_pred             chhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHH--HcCCCCeEEEEEeccc
Q 018716          255 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKK--CLRPPYGVVYLATKKN  311 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~--~L~~p~gv~ylA~K~~  311 (351)
                                ......||+|++. ..|..  +..+.+++.+.+  +|+ |+|++++.....
T Consensus       108 ----------~~~~~~fD~i~~~-~p~~~~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~~~  156 (189)
T 3p9n_A          108 ----------AGTTSPVDLVLAD-PPYNVDSADVDAILAALGTNGWTR-EGTVAVVERATT  156 (189)
T ss_dssp             ----------HCCSSCCSEEEEC-CCTTSCHHHHHHHHHHHHHSSSCC-TTCEEEEEEETT
T ss_pred             ----------hccCCCccEEEEC-CCCCcchhhHHHHHHHHHhcCccC-CCeEEEEEecCC
Confidence                      0124689999875 44665  567888888888  887 899999976443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.21  E-value=3.3e-10  Score=99.53  Aligned_cols=159  Identities=16%  Similarity=0.243  Sum_probs=104.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  179 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~  179 (351)
                      .+++.+....     ..++.+|||+|||+|..+..++.....+|+++|+++.+++.     .+.|....           
T Consensus        31 ~~~~~~~~~~-----~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~-----------   89 (219)
T 3dlc_A           31 IIAENIINRF-----GITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEI-----ALKNIADA-----------   89 (219)
T ss_dssp             HHHHHHHHHH-----CCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHH-----HHHHHHHT-----------
T ss_pred             HHHHHHHHhc-----CCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHH-----HHHHHHhc-----------
Confidence            4455555442     12334999999999999998887533489999999999854     23333321           


Q ss_pred             CCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 018716          180 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  259 (351)
Q Consensus       180 ~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~  259 (351)
                            .+..++++..+|..+.+                                                         
T Consensus        90 ------~~~~~~~~~~~d~~~~~---------------------------------------------------------  106 (219)
T 3dlc_A           90 ------NLNDRIQIVQGDVHNIP---------------------------------------------------------  106 (219)
T ss_dssp             ------TCTTTEEEEECBTTBCS---------------------------------------------------------
T ss_pred             ------cccCceEEEEcCHHHCC---------------------------------------------------------
Confidence                  12235676666553311                                                         


Q ss_pred             hccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc---------------cc---------cc
Q 018716          260 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN---------------YV---------GF  315 (351)
Q Consensus       260 ~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~---------------yf---------gv  315 (351)
                            ...+.||+|++..+++.......+++.+.++|+ |+|++++...-.               +.         ..
T Consensus       107 ------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (219)
T 3dlc_A          107 ------IEDNYADLIVSRGSVFFWEDVATAFREIYRILK-SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNIS  179 (219)
T ss_dssp             ------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSS
T ss_pred             ------CCcccccEEEECchHhhccCHHHHHHHHHHhCC-CCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccc
Confidence                  124689999999999999999999999999997 899999873110               00         00


Q ss_pred             cchHHHHHHhhhhcCceeeEEeeecCCcceeeeecC
Q 018716          316 NNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK  351 (351)
Q Consensus       316 ~gg~~~F~~~ve~~G~~~~~~v~e~~d~~i~~~~~~  351 (351)
                      .-...++.+.+++.|+-.+++..+  +...|-.+.|
T Consensus       180 ~~~~~~~~~~l~~aGf~~v~~~~~--~~~~~~~~~k  213 (219)
T 3dlc_A          180 QENVERFQNVLDEIGISSYEIILG--DEGFWIIISK  213 (219)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEE--TTEEEEEEBC
T ss_pred             cCCHHHHHHHHHHcCCCeEEEEec--CCceEEEEec
Confidence            014477888999999755554322  3455655543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.19  E-value=5.5e-11  Score=117.58  Aligned_cols=104  Identities=26%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      ..++|++|||+|||||+++++|++.|+++|++.|.++ |++. .+.|++.|.                     +..+|.+
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~-a~~~~~~n~---------------------~~~~i~~  136 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQ-AREVVRFNG---------------------LEDRVHV  136 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHH-HHHHHHHTT---------------------CTTTEEE
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHH-HHHHHHHcC---------------------CCceEEE
Confidence            3579999999999999999999999999999999996 6643 456666553                     2346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      +.++.++.                                                                ....++|+
T Consensus       137 i~~~~~~~----------------------------------------------------------------~lpe~~Dv  152 (376)
T 4hc4_A          137 LPGPVETV----------------------------------------------------------------ELPEQVDA  152 (376)
T ss_dssp             EESCTTTC----------------------------------------------------------------CCSSCEEE
T ss_pred             Eeeeeeee----------------------------------------------------------------cCCccccE
Confidence            66654331                                                                11357999


Q ss_pred             EEE---eccccCccCHHHHHHHHHHHcCCCCeEEE
Q 018716          274 ILL---TEIPYSVTSLKKLYLLIKKCLRPPYGVVY  305 (351)
Q Consensus       274 ILa---sDviY~~~~~~~L~~~l~~~L~~p~gv~y  305 (351)
                      |++   ...+..+..++.++...+++|+ |+|+++
T Consensus       153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~i  186 (376)
T 4hc4_A          153 IVSEWMGYGLLHESMLSSVLHARTKWLK-EGGLLL  186 (376)
T ss_dssp             EECCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEeecccccccccchhhhHHHHHHhhCC-CCceEC
Confidence            987   6778888999999999999997 777543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.17  E-value=5.3e-10  Score=102.85  Aligned_cols=137  Identities=15%  Similarity=0.155  Sum_probs=97.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..+..+|+++|+++.+++.     .+.|....                 .+++++++..
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  102 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDI-----FNRNARQS-----------------GLQNRVTGIV  102 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCcCcEEEE
Confidence            4688999999999999999987766699999999998854     23333221                 1234678777


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.+                                                               ...+.||+|+
T Consensus       103 ~d~~~~~---------------------------------------------------------------~~~~~fD~i~  119 (267)
T 3kkz_A          103 GSMDDLP---------------------------------------------------------------FRNEELDLIW  119 (267)
T ss_dssp             CCTTSCC---------------------------------------------------------------CCTTCEEEEE
T ss_pred             cChhhCC---------------------------------------------------------------CCCCCEEEEE
Confidence            7764421                                                               1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc---------------ccccchHHHHHHhhhhcCceeeEEeeec
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY---------------VGFNNAARHLRSLVDEEGIFGAHLIKEM  340 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y---------------fgv~gg~~~F~~~ve~~G~~~~~~v~e~  340 (351)
                      +..+++.. ..+.+++.+.++|+ |+|++++..-...               +..-....++.+.+++.|+-.++ +...
T Consensus       120 ~~~~~~~~-~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~-~~~~  196 (267)
T 3kkz_A          120 SEGAIYNI-GFERGLNEWRKYLK-KGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA-TFIL  196 (267)
T ss_dssp             ESSCGGGT-CHHHHHHHHGGGEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE-EEEC
T ss_pred             EcCCceec-CHHHHHHHHHHHcC-CCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE-EEEC
Confidence            99999988 68888889999997 8999988642110               01112466778889999964333 3443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.16  E-value=5.1e-10  Score=99.26  Aligned_cols=139  Identities=16%  Similarity=0.220  Sum_probs=96.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..+..++..+  ..+|++.|+++.+++.     .+.|.....                 + +++.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~~~~   92 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNY-----AWEKVNKLG-----------------L-KNVEV   92 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHH-----HHHHHHHHT-----------------C-TTEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-----HHHHHHHcC-----------------C-CcEEE
Confidence            467899999999999999888654  3489999999999854     233332210                 1 14666


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|....+                                                               ...+.||+
T Consensus        93 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~  109 (219)
T 3dh0_A           93 LKSEENKIP---------------------------------------------------------------LPDNTVDF  109 (219)
T ss_dssp             EECBTTBCS---------------------------------------------------------------SCSSCEEE
T ss_pred             EecccccCC---------------------------------------------------------------CCCCCeeE
Confidence            665543311                                                               12467999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccc---c----ccchHHHHHHhhhhcCceeeEEeeecCC
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---G----FNNAARHLRSLVDEEGIFGAHLIKEMTD  342 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yf---g----v~gg~~~F~~~ve~~G~~~~~~v~e~~d  342 (351)
                      |++..+++.......+++.+.++|+ |+|++++..-....   +    ..-...++.+.+++.|+ ....+.+..+
T Consensus       110 v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~~~~~  183 (219)
T 3dh0_A          110 IFMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGI-RVGRVVEVGK  183 (219)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTC-EEEEEEEETT
T ss_pred             EEeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCC-EEEEEEeeCC
Confidence            9999999999999999999999997 89999886311100   0    01146889999999996 4333344443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.16  E-value=2.5e-09  Score=98.12  Aligned_cols=149  Identities=21%  Similarity=0.199  Sum_probs=103.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      ..++...+.+.+....    ...++.+|||+|||+|..++.++.....+|+++|+++.+++.     .+.+....     
T Consensus        42 ~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----  107 (273)
T 3bus_A           42 VDDATDRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQ-----ANARATAA-----  107 (273)
T ss_dssp             HHHHHHHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHH-----HHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHH-----HHHHHHhc-----
Confidence            4455566777776653    234788999999999999998886423589999999998854     22332211     


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                  .+..++++..+|..+.+                                                   
T Consensus       108 ------------~~~~~~~~~~~d~~~~~---------------------------------------------------  124 (273)
T 3bus_A          108 ------------GLANRVTFSYADAMDLP---------------------------------------------------  124 (273)
T ss_dssp             ------------TCTTTEEEEECCTTSCC---------------------------------------------------
T ss_pred             ------------CCCcceEEEECccccCC---------------------------------------------------
Confidence                        12335677666554321                                                   


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc-------------------cc
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VG  314 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y-------------------fg  314 (351)
                                  ...+.||+|++.+++++......+++.+.++|+ |+|++++..-...                   .+
T Consensus       125 ------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (273)
T 3bus_A          125 ------------FEDASFDAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVL  191 (273)
T ss_dssp             ------------SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCC
T ss_pred             ------------CCCCCccEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEeeccCCCChhHHHHHHHHHhhcCcc
Confidence                        124689999999999999989999999999997 8999887631100                   01


Q ss_pred             ccchHHHHHHhhhhcCce
Q 018716          315 FNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       315 v~gg~~~F~~~ve~~G~~  332 (351)
                      ..-+..++.+.+++.|+-
T Consensus       192 ~~~~~~~~~~~l~~aGf~  209 (273)
T 3bus_A          192 SLGGIDEYESDVRQAELV  209 (273)
T ss_dssp             CCCCHHHHHHHHHHTTCE
T ss_pred             CCCCHHHHHHHHHHcCCe
Confidence            112457788889999963

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.16  E-value=1.1e-09  Score=99.42  Aligned_cols=136  Identities=17%  Similarity=0.183  Sum_probs=95.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..+..+|+++|+++.+++.     .+.|....                 .+..++++..
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-----------------~~~~~~~~~~  102 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEI-----FNENAVKA-----------------NCADRVKGIT  102 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCceEEEE
Confidence            4678999999999999999887655599999999998854     23333221                 1233577777


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+...+                                                               ...+.||+|+
T Consensus       103 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  119 (257)
T 3f4k_A          103 GSMDNLP---------------------------------------------------------------FQNEELDLIW  119 (257)
T ss_dssp             CCTTSCS---------------------------------------------------------------SCTTCEEEEE
T ss_pred             CChhhCC---------------------------------------------------------------CCCCCEEEEE
Confidence            7664321                                                               1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----------------cccccchHHHHHHhhhhcCceeeEEeee
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNNAARHLRSLVDEEGIFGAHLIKE  339 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----------------yfgv~gg~~~F~~~ve~~G~~~~~~v~e  339 (351)
                      +..+++.. ..+.+++.+.++|+ |+|++++..-..                |.+ -....++.+.+++.|+ ....+..
T Consensus       120 ~~~~l~~~-~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGf-~~v~~~~  195 (257)
T 3f4k_A          120 SEGAIYNI-GFERGMNEWSKYLK-KGGFIAVSEASWFTSERPAEIEDFWMDAYPE-ISVIPTCIDKMERAGY-TPTAHFI  195 (257)
T ss_dssp             EESCSCCC-CHHHHHHHHHTTEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTT-CCBHHHHHHHHHHTTE-EEEEEEE
T ss_pred             ecChHhhc-CHHHHHHHHHHHcC-CCcEEEEEEeeccCCCChHHHHHHHHHhCCC-CCCHHHHHHHHHHCCC-eEEEEEE
Confidence            99999998 68888899999997 899998874210                111 1246778888999996 4333344


Q ss_pred             c
Q 018716          340 M  340 (351)
Q Consensus       340 ~  340 (351)
                      .
T Consensus       196 ~  196 (257)
T 3f4k_A          196 L  196 (257)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.12  E-value=1.4e-09  Score=97.99  Aligned_cols=147  Identities=14%  Similarity=0.074  Sum_probs=98.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  179 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~  179 (351)
                      .+.+++...      .+++.+|||+|||+|..++.++..|. +|+++|+++.+++.     .+.|....           
T Consensus        55 ~l~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------  111 (235)
T 3lcc_A           55 LIVHLVDTS------SLPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAK-----ANETYGSS-----------  111 (235)
T ss_dssp             HHHHHHHTT------CSCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHH-----HHHHHTTS-----------
T ss_pred             HHHHHHHhc------CCCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHH-----HHHHhhcc-----------
Confidence            455555432      34567999999999999998887664 79999999998854     23333210           


Q ss_pred             CCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 018716          180 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  259 (351)
Q Consensus       180 ~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~  259 (351)
                            ....++.+..+|+.+.                                                          
T Consensus       112 ------~~~~~v~~~~~d~~~~----------------------------------------------------------  127 (235)
T 3lcc_A          112 ------PKAEYFSFVKEDVFTW----------------------------------------------------------  127 (235)
T ss_dssp             ------GGGGGEEEECCCTTTC----------------------------------------------------------
T ss_pred             ------CCCcceEEEECchhcC----------------------------------------------------------
Confidence                  0113466666554331                                                          


Q ss_pred             hccccccCCCCccEEEEeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEecccccc-----ccchHHHHHHhhhhcCce
Q 018716          260 RASEADQGEGGYDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYVG-----FNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       260 ~~~e~~~~~~~~DlILasDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg-----v~gg~~~F~~~ve~~G~~  332 (351)
                            .....||+|++..+++...  ....+++.+.++|+ |+|++++..-.....     ..-...++.+.+++.|+ 
T Consensus       128 ------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-  199 (235)
T 3lcc_A          128 ------RPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLK-PDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGF-  199 (235)
T ss_dssp             ------CCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEE-EEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTE-
T ss_pred             ------CCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCC-CCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCC-
Confidence                  0134899999999998776  88899999999997 899988753211100     11256788999999996 


Q ss_pred             eeEEeeecC
Q 018716          333 GAHLIKEMT  341 (351)
Q Consensus       333 ~~~~v~e~~  341 (351)
                      ....+.+.+
T Consensus       200 ~~~~~~~~~  208 (235)
T 3lcc_A          200 KAVSVEENP  208 (235)
T ss_dssp             EEEEEEECT
T ss_pred             eEEEEEecC
Confidence            444444443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.12  E-value=1.1e-09  Score=100.98  Aligned_cols=141  Identities=10%  Similarity=0.132  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccC
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  175 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~  175 (351)
                      -.++.|+.++.       ..+++.+|||+|||+|..++.++..+..+|++.|+++.+++. ...|+..|.          
T Consensus        35 ~d~~ll~~~~~-------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~-a~~n~~~~~----------   96 (259)
T 3lpm_A           35 IDAVLLAKFSY-------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADM-AKRSVAYNQ----------   96 (259)
T ss_dssp             HHHHHHHHHCC-------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHH-HHHHHHHTT----------
T ss_pred             HHHHHHHHHhc-------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHH-HHHHHHHCC----------
Confidence            34556666552       112688999999999999999987766699999999999865 344444332          


Q ss_pred             CCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 018716          176 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  255 (351)
Q Consensus       176 ~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~  255 (351)
                                 +..+++++.+|+.+...                                                    
T Consensus        97 -----------~~~~v~~~~~D~~~~~~----------------------------------------------------  113 (259)
T 3lpm_A           97 -----------LEDQIEIIEYDLKKITD----------------------------------------------------  113 (259)
T ss_dssp             -----------CTTTEEEECSCGGGGGG----------------------------------------------------
T ss_pred             -----------CcccEEEEECcHHHhhh----------------------------------------------------
Confidence                       23357777666543210                                                    


Q ss_pred             hhhhhccccccCCCCccEEEEeccccCc--------------------cCHHHHHHHHHHHcCCCCeEEEEEeccccccc
Q 018716          256 RAWERASEADQGEGGYDVILLTEIPYSV--------------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF  315 (351)
Q Consensus       256 ~~W~~~~e~~~~~~~~DlILasDviY~~--------------------~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv  315 (351)
                               ......||+|++.-..|..                    ..++.+++.+.++|+ |+|++++.....    
T Consensus       114 ---------~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~----  179 (259)
T 3lpm_A          114 ---------LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVHRPE----  179 (259)
T ss_dssp             ---------TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEECTT----
T ss_pred             ---------hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEEcHH----
Confidence                     0124678998874332222                    235668888888897 899999875332    


Q ss_pred             cchHHHHHHhhhhcCcee
Q 018716          316 NNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       316 ~gg~~~F~~~ve~~G~~~  333 (351)
                        ...++.+.+++.|+..
T Consensus       180 --~~~~~~~~l~~~~~~~  195 (259)
T 3lpm_A          180 --RLLDIIDIMRKYRLEP  195 (259)
T ss_dssp             --THHHHHHHHHHTTEEE
T ss_pred             --HHHHHHHHHHHCCCce
Confidence              4567888888888633

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.11  E-value=1.5e-09  Score=97.28  Aligned_cols=131  Identities=21%  Similarity=0.152  Sum_probs=88.3

Q ss_pred             CCCCEEEEEccc-CCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCG-YGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcG-tGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++++|||+||| +|..++.++.....+|+++|+++.+++.     .+.|...+.                 +  ++++.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~--~v~~~  109 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEY-----ARRNIERNN-----------------S--NVRLV  109 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHH-----HHHHHHHTT-----------------C--CCEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHH-----HHHHHHHhC-----------------C--CcEEE
Confidence            468999999999 9999999887633589999999999854     344443220                 1  46677


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.....                                                              .....||+|
T Consensus       110 ~~d~~~~~~--------------------------------------------------------------~~~~~fD~I  127 (230)
T 3evz_A          110 KSNGGIIKG--------------------------------------------------------------VVEGTFDVI  127 (230)
T ss_dssp             ECSSCSSTT--------------------------------------------------------------TCCSCEEEE
T ss_pred             eCCchhhhh--------------------------------------------------------------cccCceeEE
Confidence            776643210                                                              013578888


Q ss_pred             EEeccccCccC--------------------HHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceee
Q 018716          275 LLTEIPYSVTS--------------------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA  334 (351)
Q Consensus       275 LasDviY~~~~--------------------~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~  334 (351)
                      ++ +..|....                    +..+++.+.++|+ |+|++++.....+    ....++.+.+++.|+ ..
T Consensus       128 ~~-npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~----~~~~~~~~~l~~~g~-~~  200 (230)
T 3evz_A          128 FS-APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPDKE----KLLNVIKERGIKLGY-SV  200 (230)
T ss_dssp             EE-CCCCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEESCH----HHHHHHHHHHHHTTC-EE
T ss_pred             EE-CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEecccH----hHHHHHHHHHHHcCC-ce
Confidence            84 45553322                    4677888888887 8999988654322    246788899999996 66


Q ss_pred             EEeee
Q 018716          335 HLIKE  339 (351)
Q Consensus       335 ~~v~e  339 (351)
                      ..+.-
T Consensus       201 ~~~~~  205 (230)
T 3evz_A          201 KDIKF  205 (230)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.11  E-value=3e-09  Score=96.48  Aligned_cols=143  Identities=14%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .|+.+..+.+.+.        ..++++|||+|||+|..+..++..+. +|++.|+++.+++.     .+.|.....    
T Consensus         6 ~~~~~~~~~~~~~--------~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~----   67 (239)
T 1xxl_A            6 HHHSLGLMIKTAE--------CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEV-----ASSFAQEKG----   67 (239)
T ss_dssp             CHHHHHHHHHHHT--------CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHH-----HHHHHHHHT----
T ss_pred             cCCCcchHHHHhC--------cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHH-----HHHHHHHcC----
Confidence            5777766666663        24788999999999999998887765 89999999999854     233332210    


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   + +++++..+|+...+                                                   
T Consensus        68 -------------~-~~v~~~~~d~~~~~---------------------------------------------------   82 (239)
T 1xxl_A           68 -------------V-ENVRFQQGTAESLP---------------------------------------------------   82 (239)
T ss_dssp             -------------C-CSEEEEECBTTBCC---------------------------------------------------
T ss_pred             -------------C-CCeEEEecccccCC---------------------------------------------------
Confidence                         1 24666666553311                                                   


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc-------------------cc
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VG  314 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y-------------------fg  314 (351)
                                  ...+.||+|++..+++.......+++.+.++|+ |+|++++..-...                   ..
T Consensus        83 ------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
T 1xxl_A           83 ------------FPDDSFDIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHV  149 (239)
T ss_dssp             ------------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCC
T ss_pred             ------------CCCCcEEEEEECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCChhHHHHHHHHHHhcccccc
Confidence                        124689999999999998899999999999997 8999888621100                   00


Q ss_pred             ccchHHHHHHhhhhcCce
Q 018716          315 FNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       315 v~gg~~~F~~~ve~~G~~  332 (351)
                      ..-...++.+.+++.|+-
T Consensus       150 ~~~~~~~~~~ll~~aGf~  167 (239)
T 1xxl_A          150 RESSLSEWQAMFSANQLA  167 (239)
T ss_dssp             CCCBHHHHHHHHHHTTEE
T ss_pred             CCCCHHHHHHHHHHCCCc
Confidence            012467788888889963

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.11  E-value=1.6e-09  Score=98.39  Aligned_cols=133  Identities=17%  Similarity=0.067  Sum_probs=93.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++.....+|+++|+++.+++.     .+.|....                 .+..++.+..
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~-----a~~~~~~~-----------------~~~~~v~~~~   92 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQ-----AKRRAEEL-----------------GVSERVHFIH   92 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCcceEEEE
Confidence            5788999999999999988876422489999999999854     33343321                 1233577776


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.+                                                                ..+.||+|+
T Consensus        93 ~d~~~~~----------------------------------------------------------------~~~~fD~V~  108 (256)
T 1nkv_A           93 NDAAGYV----------------------------------------------------------------ANEKCDVAA  108 (256)
T ss_dssp             SCCTTCC----------------------------------------------------------------CSSCEEEEE
T ss_pred             CChHhCC----------------------------------------------------------------cCCCCCEEE
Confidence            6654321                                                                135799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc------------cc----ccchHHHHHHhhhhcCceeeE
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY------------VG----FNNAARHLRSLVDEEGIFGAH  335 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y------------fg----v~gg~~~F~~~ve~~G~~~~~  335 (351)
                      +..+++.......+++-+.++|+ |+|++++......            .+    .-....++.+.+++.|+-..+
T Consensus       109 ~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  183 (256)
T 1nkv_A          109 CVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE  183 (256)
T ss_dssp             EESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred             ECCChHhcCCHHHHHHHHHHHcC-CCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEE
Confidence            99999988888888888999997 8999888632110            00    011457888999999974444

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.11  E-value=2.9e-09  Score=94.67  Aligned_cols=126  Identities=16%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      +......+++.+.+.    ..++++|||+|||+|..+..++..+. .+|+++|+++.+++..     +.|...+.     
T Consensus        12 ~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-----~~~~~~~~-----   77 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLK----SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA-----KDRLKIDR-----   77 (219)
T ss_dssp             CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHH-----HHHHTGGG-----
T ss_pred             cchHHHHHHHHHHHh----hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHH-----HHHHHhhc-----
Confidence            334444555554432    14678999999999999998887553 5999999999998542     33322110     


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                           ...   ....++++..+|+...+                                                    
T Consensus        78 -----~~~---~~~~~v~~~~~d~~~~~----------------------------------------------------   97 (219)
T 3jwg_A           78 -----LPE---MQRKRISLFQSSLVYRD----------------------------------------------------   97 (219)
T ss_dssp             -----SCH---HHHTTEEEEECCSSSCC----------------------------------------------------
T ss_pred             -----ccc---ccCcceEEEeCcccccc----------------------------------------------------
Confidence                 000   00114666666552211                                                    


Q ss_pred             chhhhhccccccCCCCccEEEEeccccCcc--CHHHHHHHHHHHcCCCCeEEEEE
Q 018716          255 SRAWERASEADQGEGGYDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILasDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                                 ...+.||+|++.++++...  ....+++.+.++|+ |+|+++..
T Consensus        98 -----------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~  140 (219)
T 3jwg_A           98 -----------KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVST  140 (219)
T ss_dssp             -----------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEE
T ss_pred             -----------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEc
Confidence                       1236899999999998886  44688888888897 78866654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.11  E-value=3.1e-09  Score=100.42  Aligned_cols=136  Identities=16%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++.. |. +|++.|+++.+++.     .+.|...+                 .+..++++.
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  172 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADF-----GNRRAREL-----------------RIDDHVRSR  172 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCCceEEE
Confidence            46889999999999999988865 64 89999999998854     33343321                 123457777


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ...+.||+|
T Consensus       173 ~~d~~~~~---------------------------------------------------------------~~~~~fD~V  189 (312)
T 3vc1_A          173 VCNMLDTP---------------------------------------------------------------FDKGAVTAS  189 (312)
T ss_dssp             ECCTTSCC---------------------------------------------------------------CCTTCEEEE
T ss_pred             ECChhcCC---------------------------------------------------------------CCCCCEeEE
Confidence            76654321                                                               124689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEec---c--------------ccccccchHHHHHHhhhhcCceeeEEe
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK---K--------------NYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K---~--------------~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      ++.++++... ...+++.+.++|+ |+|++++..-   .              +|+.......++.+.+++.|+ ....+
T Consensus       190 ~~~~~l~~~~-~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf-~~~~~  266 (312)
T 3vc1_A          190 WNNESTMYVD-LHDLFSEHSRFLK-VGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRL-VPHTI  266 (312)
T ss_dssp             EEESCGGGSC-HHHHHHHHHHHEE-EEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTE-EEEEE
T ss_pred             EECCchhhCC-HHHHHHHHHHHcC-CCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCC-EEEEE
Confidence            9999999885 8899999999997 8999887641   1              111111256778899999996 44434


Q ss_pred             eec
Q 018716          338 KEM  340 (351)
Q Consensus       338 ~e~  340 (351)
                      .+.
T Consensus       267 ~~~  269 (312)
T 3vc1_A          267 VDL  269 (312)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            444

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.11  E-value=2.5e-09  Score=94.49  Aligned_cols=125  Identities=11%  Similarity=0.067  Sum_probs=89.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++..+ ..+|+++|+++.+++.. +.|+..|.                     + .++++.
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-~~~~~~~~---------------------~-~~v~~~   95 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFI-RDNLKKFV---------------------A-RNVTLV   95 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHH-HHHHHHHT---------------------C-TTEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH-HHHHHHhC---------------------C-CcEEEE
Confidence            468899999999999999988765 46999999999998652 34443331                     1 246666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.+..                                                               .....||+|
T Consensus        96 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i  112 (204)
T 3e05_A           96 EAFAPEGL---------------------------------------------------------------DDLPDPDRV  112 (204)
T ss_dssp             ECCTTTTC---------------------------------------------------------------TTSCCCSEE
T ss_pred             eCChhhhh---------------------------------------------------------------hcCCCCCEE
Confidence            55543210                                                               012569999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +.....+   ..+.+++.+.++|+ |+|++++..-..     ....++.+.+++.|+ ..++
T Consensus       113 ~~~~~~~---~~~~~l~~~~~~Lk-pgG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~~  164 (204)
T 3e05_A          113 FIGGSGG---MLEEIIDAVDRRLK-SEGVIVLNAVTL-----DTLTKAVEFLEDHGY-MVEV  164 (204)
T ss_dssp             EESCCTT---CHHHHHHHHHHHCC-TTCEEEEEECBH-----HHHHHHHHHHHHTTC-EEEE
T ss_pred             EECCCCc---CHHHHHHHHHHhcC-CCeEEEEEeccc-----ccHHHHHHHHHHCCC-ceeE
Confidence            9887765   67788888888997 899999875332     357788899999996 5443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.08  E-value=2.4e-09  Score=99.30  Aligned_cols=107  Identities=24%  Similarity=0.266  Sum_probs=81.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..|. +|+++|+++.+++.     .+.|....                 .+.+++.+..
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  123 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDR-----AKQAAEAK-----------------GVSDNMQFIH  123 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHC------------------CCGGGEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEE
Confidence            3578999999999999999888765 89999999998854     23333211                 1224577776


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.+.                                                              ...+.||+|+
T Consensus       124 ~d~~~~~~--------------------------------------------------------------~~~~~fD~v~  141 (285)
T 4htf_A          124 CAAQDVAS--------------------------------------------------------------HLETPVDLIL  141 (285)
T ss_dssp             SCGGGTGG--------------------------------------------------------------GCSSCEEEEE
T ss_pred             cCHHHhhh--------------------------------------------------------------hcCCCceEEE
Confidence            66544210                                                              1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +..+++.......+++.+.++|+ |+|++++..
T Consensus       142 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  173 (285)
T 4htf_A          142 FHAVLEWVADPRSVLQTLWSVLR-PGGVLSLMF  173 (285)
T ss_dssp             EESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ECchhhcccCHHHHHHHHHHHcC-CCeEEEEEE
Confidence            99999999999999999999997 899998864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.07  E-value=5.9e-09  Score=97.12  Aligned_cols=149  Identities=22%  Similarity=0.285  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      ++...+.+.+...+.......++.+|||+|||+|...+.++.. |. +|+++|+++.+++..     +.+....      
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a-----~~~~~~~------  128 (297)
T 2o57_A           61 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRN-----EEYNNQA------  128 (297)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHHH------
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHH-----HHHHHhc------
Confidence            3445555666555300002246889999999999999888764 65 899999999998542     2222211      


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                                 .+..++++..+|+.+.+                                                    
T Consensus       129 -----------~~~~~~~~~~~d~~~~~----------------------------------------------------  145 (297)
T 2o57_A          129 -----------GLADNITVKYGSFLEIP----------------------------------------------------  145 (297)
T ss_dssp             -----------TCTTTEEEEECCTTSCS----------------------------------------------------
T ss_pred             -----------CCCcceEEEEcCcccCC----------------------------------------------------
Confidence                       12345777766654421                                                    


Q ss_pred             chhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----------------cccccch
Q 018716          255 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNNA  318 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----------------yfgv~gg  318 (351)
                                 ...+.||+|++.+++++......+++-+.++|+ |+|++++..-..                .+.....
T Consensus       146 -----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (297)
T 2o57_A          146 -----------CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGS  213 (297)
T ss_dssp             -----------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCC
T ss_pred             -----------CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCC
Confidence                       124679999999999999889999999999997 899988863111                0111225


Q ss_pred             HHHHHHhhhhcCc
Q 018716          319 ARHLRSLVDEEGI  331 (351)
Q Consensus       319 ~~~F~~~ve~~G~  331 (351)
                      ..++.+.+++.|+
T Consensus       214 ~~~~~~~l~~aGf  226 (297)
T 2o57_A          214 LGLYRSLAKECGL  226 (297)
T ss_dssp             HHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHCCC
Confidence            6677888899996

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.07  E-value=5.2e-09  Score=89.23  Aligned_cols=134  Identities=13%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCC
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES  178 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s  178 (351)
                      ..+..++....    ...++.+|||+|||+|..++.++. +..+|+++|+++.+++.     .+.|...+.         
T Consensus        21 ~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~-----a~~~~~~~~---------   81 (183)
T 2yxd_A           21 EEIRAVSIGKL----NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEV-----TKQNLAKFN---------   81 (183)
T ss_dssp             HHHHHHHHHHH----CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHH-----HHHHHHHTT---------
T ss_pred             HHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHH-----HHHHHHHcC---------
Confidence            35556665553    224778999999999999999887 55699999999999854     333433210         


Q ss_pred             CCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 018716          179 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW  258 (351)
Q Consensus       179 ~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W  258 (351)
                              + .++++..+|+.+ +                                                        
T Consensus        82 --------~-~~~~~~~~d~~~-~--------------------------------------------------------   95 (183)
T 2yxd_A           82 --------I-KNCQIIKGRAED-V--------------------------------------------------------   95 (183)
T ss_dssp             --------C-CSEEEEESCHHH-H--------------------------------------------------------
T ss_pred             --------C-CcEEEEECCccc-c--------------------------------------------------------
Confidence                    1 245655554422 0                                                        


Q ss_pred             hhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEe
Q 018716          259 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       259 ~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                             .....||+|++..+    ...+.+++.+.++   |+|.+++..-..     ....++.+.+++.| +..+.+
T Consensus        96 -------~~~~~~D~i~~~~~----~~~~~~l~~~~~~---~gG~l~~~~~~~-----~~~~~~~~~l~~~g-~~~~~~  154 (183)
T 2yxd_A           96 -------LDKLEFNKAFIGGT----KNIEKIIEILDKK---KINHIVANTIVL-----ENAAKIINEFESRG-YNVDAV  154 (183)
T ss_dssp             -------GGGCCCSEEEECSC----SCHHHHHHHHHHT---TCCEEEEEESCH-----HHHHHHHHHHHHTT-CEEEEE
T ss_pred             -------ccCCCCcEEEECCc----ccHHHHHHHHhhC---CCCEEEEEeccc-----ccHHHHHHHHHHcC-CeEEEE
Confidence                   01257999999988    6677888888876   899998876332     25678899999999 566655

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.06  E-value=2.1e-09  Score=94.34  Aligned_cols=129  Identities=12%  Similarity=0.093  Sum_probs=91.7

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 018716          118 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD  197 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gd  197 (351)
                      +.+|||+|||+|.....++..|. +|++.|+++.+++..     +.|.                       +++++..+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~~d   92 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQTH-----------------------PSVTFHHGT   92 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHH-----HHHC-----------------------TTSEEECCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHH-----HHhC-----------------------CCCeEEeCc
Confidence            78999999999999998888776 899999999988542     2120                       135555554


Q ss_pred             CCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEEe
Q 018716          198 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT  277 (351)
Q Consensus       198 W~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILas  277 (351)
                      +.+.+                                                               ...+.||+|++.
T Consensus        93 ~~~~~---------------------------------------------------------------~~~~~fD~v~~~  109 (203)
T 3h2b_A           93 ITDLS---------------------------------------------------------------DSPKRWAGLLAW  109 (203)
T ss_dssp             GGGGG---------------------------------------------------------------GSCCCEEEEEEE
T ss_pred             ccccc---------------------------------------------------------------cCCCCeEEEEeh
Confidence            42210                                                               124689999999


Q ss_pred             ccccCcc--CHHHHHHHHHHHcCCCCeEEEEEecccc----cc------ccchHHHHHHhhhhcCceeeEEeeec
Q 018716          278 EIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNY----VG------FNNAARHLRSLVDEEGIFGAHLIKEM  340 (351)
Q Consensus       278 DviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~~y----fg------v~gg~~~F~~~ve~~G~~~~~~v~e~  340 (351)
                      .+++...  ....+++.+.++|+ |+|.+++......    +.      ..-...++.+.+++.|+ ....+...
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~~~  182 (203)
T 3h2b_A          110 YSLIHMGPGELPDALVALRMAVE-DGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGF-QVTSSHWD  182 (203)
T ss_dssp             SSSTTCCTTTHHHHHHHHHHTEE-EEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTE-EEEEEEEC
T ss_pred             hhHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCC-cEEEEEec
Confidence            9999885  78899999999997 8999998742110    00      01147889999999996 44444443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.06  E-value=2.8e-09  Score=96.70  Aligned_cols=148  Identities=15%  Similarity=0.168  Sum_probs=102.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ  172 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~  172 (351)
                      .++.+..+.+.+.+..    ...++.+|||+|||+|..++.++.. +. +|+++|+++.+++..     +.+..      
T Consensus        36 ~~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a-----~~~~~------   99 (266)
T 3ujc_A           36 ISSGGLEATKKILSDI----ELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMA-----NERVS------   99 (266)
T ss_dssp             CSTTHHHHHHHHTTTC----CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHTCC------
T ss_pred             cccchHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHhh------
Confidence            4566667777776653    2347889999999999999988865 54 899999999887431     11110      


Q ss_pred             ccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 018716          173 SRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL  252 (351)
Q Consensus       173 ~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~l  252 (351)
                                    ..+++++..+|+...+                                                  
T Consensus       100 --------------~~~~~~~~~~d~~~~~--------------------------------------------------  115 (266)
T 3ujc_A          100 --------------GNNKIIFEANDILTKE--------------------------------------------------  115 (266)
T ss_dssp             --------------SCTTEEEEECCTTTCC--------------------------------------------------
T ss_pred             --------------cCCCeEEEECccccCC--------------------------------------------------
Confidence                          0035666665553321                                                  


Q ss_pred             cCchhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEecccc----c-----------c-
Q 018716          253 SGSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNY----V-----------G-  314 (351)
Q Consensus       253 s~~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~y----f-----------g-  314 (351)
                                   ...+.||+|++.+++++.  .....+++.+.++|+ |+|++++..-...    +           + 
T Consensus       116 -------------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (266)
T 3ujc_A          116 -------------FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYCATEKENWDDEFKEYVKQRKY  181 (266)
T ss_dssp             -------------CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEESCGGGCCHHHHHHHHHHTC
T ss_pred             -------------CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEeccCCcccchHHHHHHHhcCCC
Confidence                         124689999999999998  888899999999997 8999888741110    0           0 


Q ss_pred             ccchHHHHHHhhhhcCceeeE
Q 018716          315 FNNAARHLRSLVDEEGIFGAH  335 (351)
Q Consensus       315 v~gg~~~F~~~ve~~G~~~~~  335 (351)
                      ..-...++.+.+++.|+-.++
T Consensus       182 ~~~~~~~~~~~l~~~Gf~~~~  202 (266)
T 3ujc_A          182 TLITVEEYADILTACNFKNVV  202 (266)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEE
T ss_pred             CCCCHHHHHHHHHHcCCeEEE
Confidence            011467788899999974433

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.06  E-value=1.6e-09  Score=97.20  Aligned_cols=103  Identities=22%  Similarity=0.338  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..+..++..|..+|+++|+++.+++..     +.|..                     ..++++..
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-----~~~~~---------------------~~~~~~~~   95 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA-----RAAGP---------------------DTGITYER   95 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH-----HHTSC---------------------SSSEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHH-----HHhcc---------------------cCCceEEE
Confidence            47889999999999999988887766899999999887431     11110                     11355554


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.+                                                               ...+.||+|+
T Consensus        96 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  112 (243)
T 3bkw_A           96 ADLDKLH---------------------------------------------------------------LPQDSFDLAY  112 (243)
T ss_dssp             CCGGGCC---------------------------------------------------------------CCTTCEEEEE
T ss_pred             cChhhcc---------------------------------------------------------------CCCCCceEEE
Confidence            4432210                                                               1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +..+++.......+++.+.++|+ |+|++++..
T Consensus       113 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHYVEDVARLFRTVHQALS-PGGHFVFST  144 (243)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EeccccccchHHHHHHHHHHhcC-cCcEEEEEe
Confidence            99999998889999999999997 899988864

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.05  E-value=3.6e-09  Score=95.04  Aligned_cols=138  Identities=20%  Similarity=0.247  Sum_probs=96.4

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  179 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~  179 (351)
                      .+.+++...+      .++.+|||+|||+|..+..++..|. +|+++|+++.+++..     +.|.              
T Consensus        42 ~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~--------------   95 (242)
T 3l8d_A           42 TIIPFFEQYV------KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKG-----KERG--------------   95 (242)
T ss_dssp             THHHHHHHHS------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HTTT--------------
T ss_pred             HHHHHHHHHc------CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----Hhhc--------------
Confidence            3455555442      3678999999999999999888776 899999999887531     1110              


Q ss_pred             CCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 018716          180 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  259 (351)
Q Consensus       180 ~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~  259 (351)
                             ...++++..+|..+.+                                                         
T Consensus        96 -------~~~~~~~~~~d~~~~~---------------------------------------------------------  111 (242)
T 3l8d_A           96 -------EGPDLSFIKGDLSSLP---------------------------------------------------------  111 (242)
T ss_dssp             -------CBTTEEEEECBTTBCS---------------------------------------------------------
T ss_pred             -------ccCCceEEEcchhcCC---------------------------------------------------------
Confidence                   0124666555543311                                                         


Q ss_pred             hccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc--------c---cc-----ccchHHHHH
Q 018716          260 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--------Y---VG-----FNNAARHLR  323 (351)
Q Consensus       260 ~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~--------y---fg-----v~gg~~~F~  323 (351)
                            ...+.||+|++..++++......+++.+.++|+ |+|++++..-..        +   ++     ..-...++.
T Consensus       112 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (242)
T 3l8d_A          112 ------FENEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFE  184 (242)
T ss_dssp             ------SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHH
T ss_pred             ------CCCCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHH
Confidence                  124689999999999999999999999999997 899999874110        0   00     001456788


Q ss_pred             HhhhhcCceee
Q 018716          324 SLVDEEGIFGA  334 (351)
Q Consensus       324 ~~ve~~G~~~~  334 (351)
                      +.+++.|+-..
T Consensus       185 ~~l~~~Gf~~~  195 (242)
T 3l8d_A          185 QLVKEQGFKVV  195 (242)
T ss_dssp             HHHHHTTEEEE
T ss_pred             HHHHHcCCEEE
Confidence            99999996333

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.05  E-value=1.8e-09  Score=95.49  Aligned_cols=124  Identities=23%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..+..++..|. +|+++|+++.+++..     +.|.                        .+.+..+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~------------------------~~~~~~~   92 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEA-----SRRL------------------------GRPVRTM   92 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHH------------------------TSCCEEC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHH-----HHhc------------------------CCceEEe
Confidence            678999999999999999888776 899999999988542     2221                        0112222


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |....                                                                ...+.||+|++
T Consensus        93 d~~~~----------------------------------------------------------------~~~~~fD~v~~  108 (211)
T 3e23_A           93 LFHQL----------------------------------------------------------------DAIDAYDAVWA  108 (211)
T ss_dssp             CGGGC----------------------------------------------------------------CCCSCEEEEEE
T ss_pred             eeccC----------------------------------------------------------------CCCCcEEEEEe
Confidence            21110                                                                13568999999


Q ss_pred             eccccCcc--CHHHHHHHHHHHcCCCCeEEEEEecccccc---------ccchHHHHHHhhhhcC-ceeeE
Q 018716          277 TEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------FNNAARHLRSLVDEEG-IFGAH  335 (351)
Q Consensus       277 sDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg---------v~gg~~~F~~~ve~~G-~~~~~  335 (351)
                      ..+++...  ....+++.+.++|+ |+|++++........         ..-...++.+.+++.| +-..+
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~  178 (211)
T 3e23_A          109 HACLLHVPRDELADVLKLIWRALK-PGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA  178 (211)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcC-CCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence            99999887  77788888999997 899999874322100         0126788999999999 74333

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.04  E-value=2.4e-09  Score=97.01  Aligned_cols=132  Identities=15%  Similarity=0.181  Sum_probs=90.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..++.++..+..+|+++|+++.+++.     .+.|.....                  ..++++..+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~------------------~~~~~~~~~  135 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ-----AKTYLGEEG------------------KRVRNYFCC  135 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHH-----HHHHTGGGG------------------GGEEEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHH-----HHHHhhhcC------------------CceEEEEEc
Confidence            588999999999999998877666699999999999854     222221100                  113555555


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |+...+                                                               ...+.||+|++
T Consensus       136 d~~~~~---------------------------------------------------------------~~~~~fD~v~~  152 (241)
T 2ex4_A          136 GLQDFT---------------------------------------------------------------PEPDSYDVIWI  152 (241)
T ss_dssp             CGGGCC---------------------------------------------------------------CCSSCEEEEEE
T ss_pred             ChhhcC---------------------------------------------------------------CCCCCEEEEEE
Confidence            432210                                                               12357999999


Q ss_pred             eccccCccC--HHHHHHHHHHHcCCCCeEEEEEeccc---------cccccchHHHHHHhhhhcCceeeE
Q 018716          277 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN---------YVGFNNAARHLRSLVDEEGIFGAH  335 (351)
Q Consensus       277 sDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~~---------yfgv~gg~~~F~~~ve~~G~~~~~  335 (351)
                      ..+++....  +..+++.+.++|+ |+|++++..-..         .........++.+.+++.|+-..+
T Consensus       153 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  221 (241)
T 2ex4_A          153 QWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  221 (241)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence            999987765  5688888899997 899998853211         000112578899999999974333

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.04  E-value=8.9e-09  Score=88.42  Aligned_cols=135  Identities=16%  Similarity=0.273  Sum_probs=89.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCC-ceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAP-SVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~-~v~~~~  195 (351)
                      ++++|||+|||+|..++.++..+ .+|+++|+++.+++.     .+.|...+.                 ++. ++++..
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~-----a~~~~~~~~-----------------~~~~~~~~~~  108 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKL-----AKENIKLNN-----------------LDNYDIRVVH  108 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHH-----HHHHHHHTT-----------------CTTSCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHH-----HHHHHHHcC-----------------CCccceEEEE
Confidence            78899999999999999988774 599999999999854     333433210                 111 366655


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.                                                                .....||+|+
T Consensus       109 ~d~~~~----------------------------------------------------------------~~~~~~D~v~  124 (194)
T 1dus_A          109 SDLYEN----------------------------------------------------------------VKDRKYNKII  124 (194)
T ss_dssp             CSTTTT----------------------------------------------------------------CTTSCEEEEE
T ss_pred             Cchhcc----------------------------------------------------------------cccCCceEEE
Confidence            554321                                                                1135799999


Q ss_pred             EeccccC-ccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEeeecCCcce
Q 018716          276 LTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDI  345 (351)
Q Consensus       276 asDviY~-~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e~~d~~i  345 (351)
                      +....+. ......+++.+.++|+ |+|++++.....     ....++.+.+++. +...+++.....--+
T Consensus       125 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~-~~~~~~~~~~~~~~~  188 (194)
T 1dus_A          125 TNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK-----QGAKSLAKYMKDV-FGNVETVTIKGGYRV  188 (194)
T ss_dssp             ECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST-----HHHHHHHHHHHHH-HSCCEEEEEETTEEE
T ss_pred             ECCCcccchhHHHHHHHHHHHHcC-CCCEEEEEECCC-----CChHHHHHHHHHH-hcceEEEecCCcEEE
Confidence            8665443 3556788888888897 899999886443     2455677777776 445555554443333

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.04  E-value=4.8e-09  Score=93.21  Aligned_cols=108  Identities=20%  Similarity=0.328  Sum_probs=75.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++++|||+|||+|..++.++..|. +|+++|+++.+++.     .+.|....          ....   ....++.+..+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~----------~~~~---~~~~~~~~~~~   90 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRL-----AETAARSP----------GLNQ---KTGGKAEFKVE   90 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHTTCC----------SCCS---SSSCEEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHH-----HHHHHHhc----------CCcc---ccCcceEEEEe
Confidence            678999999999999999988776 89999999998754     23332110          0000   00123454444


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |....+                                                               .....||+|++
T Consensus        91 d~~~~~---------------------------------------------------------------~~~~~~D~v~~  107 (235)
T 3sm3_A           91 NASSLS---------------------------------------------------------------FHDSSFDFAVM  107 (235)
T ss_dssp             CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred             cccccC---------------------------------------------------------------CCCCceeEEEE
Confidence            332210                                                               12468999999


Q ss_pred             eccccCccCHH---HHHHHHHHHcCCCCeEEEEE
Q 018716          277 TEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       277 sDviY~~~~~~---~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ..+++......   .+++.+.++|+ |+|++++.
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~  140 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLV  140 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEE
Confidence            99999887766   78888888897 89999886

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.03  E-value=7.8e-10  Score=95.36  Aligned_cols=127  Identities=17%  Similarity=0.174  Sum_probs=85.3

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716           98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus        98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      ...+.+.+.+.+.   ...++++|||+|||+|..++.++..+..+|+++|+++.+++. ...|+..|.            
T Consensus        28 ~~~~~~~~~~~l~---~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~------------   91 (187)
T 2fhp_A           28 TDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKV-IKENIAITK------------   91 (187)
T ss_dssp             CHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHH---hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHHHhC------------
Confidence            3455566555431   125788999999999999998887777799999999999864 234443331            


Q ss_pred             CCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  257 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~  257 (351)
                               +..++++..+|+.+...                                                     .
T Consensus        92 ---------~~~~~~~~~~d~~~~~~-----------------------------------------------------~  109 (187)
T 2fhp_A           92 ---------EPEKFEVRKMDANRALE-----------------------------------------------------Q  109 (187)
T ss_dssp             ---------CGGGEEEEESCHHHHHH-----------------------------------------------------H
T ss_pred             ---------CCcceEEEECcHHHHHH-----------------------------------------------------H
Confidence                     12357777766543100                                                     0


Q ss_pred             hhhccccccCCCCccEEEEeccccCccCHHHHHHHH--HHHcCCCCeEEEEEecc
Q 018716          258 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLI--KKCLRPPYGVVYLATKK  310 (351)
Q Consensus       258 W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l--~~~L~~p~gv~ylA~K~  310 (351)
                      .      ......||+|++.. .|.....+..++.+  .++|+ |+|++++....
T Consensus       110 ~------~~~~~~fD~i~~~~-~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~  156 (187)
T 2fhp_A          110 F------YEEKLQFDLVLLDP-PYAKQEIVSQLEKMLERQLLT-NEAVIVCETDK  156 (187)
T ss_dssp             H------HHTTCCEEEEEECC-CGGGCCHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             H------HhcCCCCCEEEECC-CCCchhHHHHHHHHHHhcccC-CCCEEEEEeCC
Confidence            0      01246799999654 48777788888888  55676 89999987543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.03  E-value=1.6e-08  Score=89.62  Aligned_cols=99  Identities=22%  Similarity=0.111  Sum_probs=74.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++++|||+|||+|..+..++..+. +|++.|+++.+++..     +.+.                      ..++++..+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~----------------------~~~~~~~~~   96 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIA-----KEKL----------------------PKEFSITEG   96 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHH-----HHHS----------------------CTTCCEESC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHH-----HHhC----------------------CCceEEEeC
Confidence            688999999999999999887765 899999999987531     2111                      113455444


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+.+                                                               .. +.||+|++
T Consensus        97 d~~~~~---------------------------------------------------------------~~-~~fD~v~~  112 (220)
T 3hnr_A           97 DFLSFE---------------------------------------------------------------VP-TSIDTIVS  112 (220)
T ss_dssp             CSSSCC---------------------------------------------------------------CC-SCCSEEEE
T ss_pred             ChhhcC---------------------------------------------------------------CC-CCeEEEEE
Confidence            433210                                                               12 68999999


Q ss_pred             eccccCccCHHH--HHHHHHHHcCCCCeEEEEEe
Q 018716          277 TEIPYSVTSLKK--LYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       277 sDviY~~~~~~~--L~~~l~~~L~~p~gv~ylA~  308 (351)
                      ..+++.......  +++.+.++|+ |+|++++..
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  145 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFAD  145 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             CcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEe
Confidence            999998887766  8888999997 899999873

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.03  E-value=3.4e-09  Score=93.50  Aligned_cols=135  Identities=16%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .++....+.+++...+      .++++|||+|||+|..++.++..+..+|+++|+++.+++.     .+.|...+.    
T Consensus        43 ~~~~~~~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~----  107 (205)
T 3grz_A           43 NHQTTQLAMLGIERAM------VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA-----AEENAALNG----  107 (205)
T ss_dssp             CHHHHHHHHHHHHHHC------SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH-----HHHHHHHTT----
T ss_pred             CCccHHHHHHHHHHhc------cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHHcC----
Confidence            3566666777776542      3678999999999999999888777799999999999854     334433210    


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   +. ++++..+|+...                                                    
T Consensus       108 -------------~~-~v~~~~~d~~~~----------------------------------------------------  121 (205)
T 3grz_A          108 -------------IY-DIALQKTSLLAD----------------------------------------------------  121 (205)
T ss_dssp             -------------CC-CCEEEESSTTTT----------------------------------------------------
T ss_pred             -------------CC-ceEEEecccccc----------------------------------------------------
Confidence                         11 255555544220                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                                   ....||+|++.-..   ..+..+++.+.++|+ |+|++++..-..     .....+.+.+++.|+
T Consensus       122 -------------~~~~fD~i~~~~~~---~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~Gf  177 (205)
T 3grz_A          122 -------------VDGKFDLIVANILA---EILLDLIPQLDSHLN-EDGQVIFSGIDY-----LQLPKIEQALAENSF  177 (205)
T ss_dssp             -------------CCSCEEEEEEESCH---HHHHHHGGGSGGGEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTE
T ss_pred             -------------CCCCceEEEECCcH---HHHHHHHHHHHHhcC-CCCEEEEEecCc-----ccHHHHHHHHHHcCC
Confidence                         13579999987443   234566666677786 899998864222     246788899999996

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.03  E-value=4.7e-09  Score=94.89  Aligned_cols=132  Identities=16%  Similarity=0.230  Sum_probs=92.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..+..+|++.|+++.+++.     .+.|...                    ..++++..
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~--------------------~~~~~~~~  146 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEE-----AKRELAG--------------------MPVGKFIL  146 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHH-----HHHHTTT--------------------SSEEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHH-----HHHHhcc--------------------CCceEEEE
Confidence            4688999999999999998876666689999999998854     2222210                    02466665


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+...+                                                               ...+.||+|+
T Consensus       147 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  163 (254)
T 1xtp_A          147 ASMETAT---------------------------------------------------------------LPPNTYDLIV  163 (254)
T ss_dssp             SCGGGCC---------------------------------------------------------------CCSSCEEEEE
T ss_pred             ccHHHCC---------------------------------------------------------------CCCCCeEEEE
Confidence            5543311                                                               1245899999


Q ss_pred             EeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccc----c------ccccchHHHHHHhhhhcCceeeEE
Q 018716          276 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN----Y------VGFNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       276 asDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~----y------fgv~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +..++++.  .....+++.+.++|+ |+|++++.....    +      ........++.+.+++.|+-..++
T Consensus       164 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          164 IQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            99999887  457888888899997 899999875210    0      001125688999999999744443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.02  E-value=6.7e-10  Score=104.65  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .+++++|||+|||+|..++.++.. +..+|+++|+++.+++. .+.|+..+
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~-A~~~~~~~   93 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHS-ARQNIRHY   93 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHH-HHHTC---
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHHHHhh
Confidence            368999999999999999988864 55699999999999975 34555443

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.02  E-value=4.7e-09  Score=93.36  Aligned_cols=111  Identities=16%  Similarity=0.189  Sum_probs=75.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++++|||+|||+|..+..++..+ ..+|+++|+++.+++.     .+.|...+          ....   ....++++.
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~----------~~~~---~~~~~v~~~   89 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEI-----AQERLDRL----------RLPR---NQWERLQLI   89 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHH-----HHHHHTTC----------CCCH---HHHTTEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHH-----HHHHHHHh----------cCCc---ccCcceEEE
Confidence            467899999999999999988754 3699999999999854     23333211          0000   001246666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|....+                                                               ...+.||+|
T Consensus        90 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v  106 (217)
T 3jwh_A           90 QGALTYQD---------------------------------------------------------------KRFHGYDAA  106 (217)
T ss_dssp             ECCTTSCC---------------------------------------------------------------GGGCSCSEE
T ss_pred             eCCccccc---------------------------------------------------------------ccCCCcCEE
Confidence            65542210                                                               123689999


Q ss_pred             EEeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          275 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       275 LasDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      ++.++++...  ....+++.+.++|+ |+|++++..
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~  141 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTP  141 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEE
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            9999999765  55788888888897 889766653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.01  E-value=7.8e-09  Score=92.68  Aligned_cols=142  Identities=17%  Similarity=0.182  Sum_probs=94.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      ..++.+|||+|||+|..+..++... ..+|+++|+++.+++.     .+.|..                    ...++++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~--------------------~~~~~~~   96 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI-----AKNRFR--------------------GNLKVKY   96 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH-----HHHHTC--------------------SCTTEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHH-----HHHhhc--------------------cCCCEEE
Confidence            3577899999999999998888652 3589999999998753     222221                    0114666


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.+                                                                ..+.||+
T Consensus        97 ~~~d~~~~~----------------------------------------------------------------~~~~fD~  112 (234)
T 3dtn_A           97 IEADYSKYD----------------------------------------------------------------FEEKYDM  112 (234)
T ss_dssp             EESCTTTCC----------------------------------------------------------------CCSCEEE
T ss_pred             EeCchhccC----------------------------------------------------------------CCCCceE
Confidence            555543311                                                                1268999


Q ss_pred             EEEeccccCccCHH--HHHHHHHHHcCCCCeEEEEEecccc-------------------cc----------------cc
Q 018716          274 ILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATKKNY-------------------VG----------------FN  316 (351)
Q Consensus       274 ILasDviY~~~~~~--~L~~~l~~~L~~p~gv~ylA~K~~y-------------------fg----------------v~  316 (351)
                      |++..+++......  .+++-+.++|+ |+|+++++.....                   .|                ..
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILK-ESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD  191 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence            99999999886544  48888888997 8999998741100                   00                01


Q ss_pred             chHHHHHHhhhhcCceeeEEeeecCCccee
Q 018716          317 NAARHLRSLVDEEGIFGAHLIKEMTDRDIW  346 (351)
Q Consensus       317 gg~~~F~~~ve~~G~~~~~~v~e~~d~~i~  346 (351)
                      -...++.+.+++.|+-.+++....-.-.+|
T Consensus       192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~  221 (234)
T 3dtn_A          192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVM  221 (234)
T ss_dssp             CBHHHHHHHHHHTTCEEEEEEEEETTEEEE
T ss_pred             cCHHHHHHHHHHcCCCceeeeeeecceeEE
Confidence            134677788999998667665554443333

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.00  E-value=3.1e-09  Score=90.70  Aligned_cols=128  Identities=12%  Similarity=0.113  Sum_probs=90.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..+..++..+. +|++.|+++.+++..     +.|   .                    +++++..
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~---~--------------------~~v~~~~   66 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEV-----KEK---F--------------------DSVITLS   66 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHH-----HHH---C--------------------TTSEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHH-----HHh---C--------------------CCcEEEe
Confidence            3678999999999999999887765 999999999887542     212   0                    1345544


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|   .+                                                               ...+.||+|+
T Consensus        67 ~d---~~---------------------------------------------------------------~~~~~~D~v~   80 (170)
T 3i9f_A           67 DP---KE---------------------------------------------------------------IPDNSVDFIL   80 (170)
T ss_dssp             SG---GG---------------------------------------------------------------SCTTCEEEEE
T ss_pred             CC---CC---------------------------------------------------------------CCCCceEEEE
Confidence            43   00                                                               1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc---cc----ccchHHHHHHhhhhcCceeeEEeeecCC
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY---VG----FNNAARHLRSLVDEEGIFGAHLIKEMTD  342 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y---fg----v~gg~~~F~~~ve~~G~~~~~~v~e~~d  342 (351)
                      +.++++.......+++.+.++|+ |+|++++..-...   ++    ..-...++.+.++  |+ ....+.+...
T Consensus        81 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf-~~~~~~~~~~  150 (170)
T 3i9f_A           81 FANSFHDMDDKQHVISEVKRILK-DDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NF-VVEKRFNPTP  150 (170)
T ss_dssp             EESCSTTCSCHHHHHHHHHHHEE-EEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TE-EEEEEECSST
T ss_pred             EccchhcccCHHHHHHHHHHhcC-CCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--Cc-EEEEccCCCC
Confidence            99999999999999999999997 8999988732111   10    0114677888887  75 5444444443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.00  E-value=9.1e-10  Score=94.82  Aligned_cols=54  Identities=22%  Similarity=0.228  Sum_probs=40.7

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+.+.+...+.   ...++++|||+|||+|..++.++..+..+|+++|+++.+++.
T Consensus        16 ~~~~~~~~~~l~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~   69 (177)
T 2esr_A           16 DKVRGAIFNMIG---PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAI   69 (177)
T ss_dssp             --CHHHHHHHHC---SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             HHHHHHHHHHHH---hhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            344445544431   135788999999999999999887776799999999999854

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.99  E-value=5.8e-09  Score=92.55  Aligned_cols=102  Identities=22%  Similarity=0.375  Sum_probs=75.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..+..++..+. +|+++|+++.+++.     .+.|...+                   ..++++..+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~~   92 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRK-----AREYAKSR-------------------ESNVEFIVG   92 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-------------------TCCCEEEEC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHhc-------------------CCCceEEEC
Confidence            478999999999999998888776 99999999998854     33333221                   124566555


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+.+                                                               ...+.||+|++
T Consensus        93 d~~~~~---------------------------------------------------------------~~~~~~D~v~~  109 (227)
T 1ve3_A           93 DARKLS---------------------------------------------------------------FEDKTFDYVIF  109 (227)
T ss_dssp             CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred             chhcCC---------------------------------------------------------------CCCCcEEEEEE
Confidence            543310                                                               12458999999


Q ss_pred             ecc--ccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          277 TEI--PYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       277 sDv--iY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      .++  .+.......+++.+.++|+ |+|++++.
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~  141 (227)
T 1ve3_A          110 IDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMY  141 (227)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             cCchHhCCHHHHHHHHHHHHHHcC-CCcEEEEE
Confidence            999  7777777888888999997 89988876

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.99  E-value=2e-08  Score=93.10  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      ++...+.+.+....    ...++.+|||+|||+|...+.++ ..|. +|+++|+++.+++.     .+.+....      
T Consensus        47 ~a~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~-----a~~~~~~~------  110 (287)
T 1kpg_A           47 EAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANH-----VQQLVANS------  110 (287)
T ss_dssp             HHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHTC------
T ss_pred             HHHHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHhc------
Confidence            44455666666542    23468899999999999998887 5666 99999999998854     23332210      


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                                 .+..++++..+|+..                                                      
T Consensus       111 -----------~~~~~~~~~~~d~~~------------------------------------------------------  125 (287)
T 1kpg_A          111 -----------ENLRSKRVLLAGWEQ------------------------------------------------------  125 (287)
T ss_dssp             -----------CCCSCEEEEESCGGG------------------------------------------------------
T ss_pred             -----------CCCCCeEEEECChhh------------------------------------------------------
Confidence                       012345554443211                                                      


Q ss_pred             chhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          255 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                                 .. +.||+|++.+++++.  +....+++.+.++|+ |+|++++.
T Consensus       126 -----------~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~  167 (287)
T 1kpg_A          126 -----------FD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLH  167 (287)
T ss_dssp             -----------CC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEE
T ss_pred             -----------CC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEE
Confidence                       11 679999999999887  678899999999997 89998875

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.99  E-value=8.9e-09  Score=88.27  Aligned_cols=138  Identities=16%  Similarity=0.172  Sum_probs=93.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  179 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~  179 (351)
                      .+..++....    ...++.+|||+|||+|..++.++..+ .+|++.|+++.+++.     .+.|...+.          
T Consensus        20 ~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~-----a~~~~~~~~----------   79 (192)
T 1l3i_A           20 EVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIST-----TEMNLQRHG----------   79 (192)
T ss_dssp             HHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHH-----HHHHHHHTT----------
T ss_pred             HHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHH-----HHHHHHHcC----------
Confidence            4555555443    23578899999999999999998776 699999999998854     334443210          


Q ss_pred             CCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 018716          180 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  259 (351)
Q Consensus       180 ~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~  259 (351)
                             +..++.+..+|+.+.                                                        + 
T Consensus        80 -------~~~~~~~~~~d~~~~--------------------------------------------------------~-   95 (192)
T 1l3i_A           80 -------LGDNVTLMEGDAPEA--------------------------------------------------------L-   95 (192)
T ss_dssp             -------CCTTEEEEESCHHHH--------------------------------------------------------H-
T ss_pred             -------CCcceEEEecCHHHh--------------------------------------------------------c-
Confidence                   112455554443210                                                        0 


Q ss_pred             hccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEe
Q 018716          260 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       260 ~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                            .....||+|++..+.   ..+..+++.+.++|+ |+|++++..-..     ....++.+.+++.|+ ..+.+
T Consensus        96 ------~~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~~~  157 (192)
T 1l3i_A           96 ------CKIPDIDIAVVGGSG---GELQEILRIIKDKLK-PGGRIIVTAILL-----ETKFEAMECLRDLGF-DVNIT  157 (192)
T ss_dssp             ------TTSCCEEEEEESCCT---TCHHHHHHHHHHTEE-EEEEEEEEECBH-----HHHHHHHHHHHHTTC-CCEEE
T ss_pred             ------ccCCCCCEEEECCch---HHHHHHHHHHHHhcC-CCcEEEEEecCc-----chHHHHHHHHHHCCC-ceEEE
Confidence                  012479999988665   346888888888997 899988875332     256788888999886 55543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.99  E-value=9e-09  Score=94.69  Aligned_cols=118  Identities=23%  Similarity=0.367  Sum_probs=84.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES  178 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s  178 (351)
                      .+.+++...    ....++++|||+|||+|.....++..+ ..+|+++|+++.+++.     .+.|.....         
T Consensus        24 ~l~~~l~~~----~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~---------   85 (276)
T 3mgg_A           24 TLEKLLHHD----TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK-----ARENTEKNG---------   85 (276)
T ss_dssp             HHHHHHHTT----CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHHHTT---------
T ss_pred             HHHHHHhhc----ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHcC---------
Confidence            444444433    233578899999999999998888753 3589999999998854     233332110         


Q ss_pred             CCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 018716          179 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW  258 (351)
Q Consensus       179 ~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W  258 (351)
                               .+++.+..+|..+.+                                                        
T Consensus        86 ---------~~~~~~~~~d~~~~~--------------------------------------------------------  100 (276)
T 3mgg_A           86 ---------IKNVKFLQANIFSLP--------------------------------------------------------  100 (276)
T ss_dssp             ---------CCSEEEEECCGGGCC--------------------------------------------------------
T ss_pred             ---------CCCcEEEEcccccCC--------------------------------------------------------
Confidence                     124566555443210                                                        


Q ss_pred             hhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          259 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       259 ~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                             ...+.||+|++..+++.....+.+++.+.++|+ |+|++++..
T Consensus       101 -------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  142 (276)
T 3mgg_A          101 -------FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIE  142 (276)
T ss_dssp             -------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             -------CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEE
Confidence                   124689999999999999999999999999997 899998864

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.99  E-value=8.4e-09  Score=92.10  Aligned_cols=100  Identities=22%  Similarity=0.203  Sum_probs=76.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..+. +|+++|+++.+++..     +.+.                      ..++++..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~----------------------~~~v~~~~   92 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHA-----QGRL----------------------KDGITYIH   92 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHH-----HHHS----------------------CSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHH-----HHhh----------------------hCCeEEEE
Confidence            4778999999999999999887776 899999999987431     1111                      11355544


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.                                                                ...+.||+|+
T Consensus        93 ~d~~~~----------------------------------------------------------------~~~~~fD~v~  108 (250)
T 2p7i_A           93 SRFEDA----------------------------------------------------------------QLPRRYDNIV  108 (250)
T ss_dssp             SCGGGC----------------------------------------------------------------CCSSCEEEEE
T ss_pred             ccHHHc----------------------------------------------------------------CcCCcccEEE
Confidence            433210                                                                1246799999


Q ss_pred             EeccccCccCHHHHHHHHH-HHcCCCCeEEEEEe
Q 018716          276 LTEIPYSVTSLKKLYLLIK-KCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~-~~L~~p~gv~ylA~  308 (351)
                      +..++++......+++-+. ++|+ |+|.+++..
T Consensus       109 ~~~~l~~~~~~~~~l~~~~~~~Lk-pgG~l~i~~  141 (250)
T 2p7i_A          109 LTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVC  141 (250)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             EhhHHHhhcCHHHHHHHHHHHhcC-CCCEEEEEc
Confidence            9999999988899999999 9997 899999875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.98  E-value=1.2e-08  Score=93.22  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=91.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..+. +|++.|+++.+++..     +.+....                 .+ +++.+..
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~~~-----------------~~-~~v~~~~   91 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVA-----RAFIEGN-----------------GH-QQVEYVQ   91 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHHHHHT-----------------TC-CSEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHH-----HHHHHhc-----------------CC-CceEEEE
Confidence            3688999999999999998887765 999999999998542     2232211                 01 2466666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|....+                                                               ...+.||+|+
T Consensus        92 ~d~~~l~---------------------------------------------------------------~~~~~fD~V~  108 (260)
T 1vl5_A           92 GDAEQMP---------------------------------------------------------------FTDERFHIVT  108 (260)
T ss_dssp             CCC-CCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred             ecHHhCC---------------------------------------------------------------CCCCCEEEEE
Confidence            5543311                                                               1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc-------------------ccccchHHHHHHhhhhcCce
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VGFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y-------------------fgv~gg~~~F~~~ve~~G~~  332 (351)
                      +..++++....+.+++-+.++|+ |+|++++......                   ....-...++.+.+++.|+-
T Consensus       109 ~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  183 (260)
T 1vl5_A          109 CRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  183 (260)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             EhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCe
Confidence            99999999999999999999997 8999888621100                   00112456788888888863

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.98  E-value=3.3e-09  Score=93.97  Aligned_cols=120  Identities=15%  Similarity=0.129  Sum_probs=84.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .|-....+..++....    ...++++|||+|||+|..+..++..+. +|+++|+++.+++.     .+.|...      
T Consensus        32 ~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~------   95 (216)
T 3ofk_A           32 NPFERERHTQLLRLSL----SSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGR-----ACQRTKR------   95 (216)
T ss_dssp             CHHHHHHHHHHHHHHT----TTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHH-----HHHHTTT------
T ss_pred             CHhHHHHHHHHHHHHc----ccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHhccc------
Confidence            4544445666665442    234678999999999999999988764 89999999998854     2222210      


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                    .+++++..+|..+.                                                    
T Consensus        96 --------------~~~~~~~~~d~~~~----------------------------------------------------  109 (216)
T 3ofk_A           96 --------------WSHISWAATDILQF----------------------------------------------------  109 (216)
T ss_dssp             --------------CSSEEEEECCTTTC----------------------------------------------------
T ss_pred             --------------CCCeEEEEcchhhC----------------------------------------------------
Confidence                          12466665554331                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHH---HHHHHHHHHcCCCCeEEEEEe
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~---~L~~~l~~~L~~p~gv~ylA~  308 (351)
                                  ...+.||+|++..+++.....+   .+++.+.++|+ |+|++++..
T Consensus       110 ------------~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~  154 (216)
T 3ofk_A          110 ------------STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLA-PGGHLVFGS  154 (216)
T ss_dssp             ------------CCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ------------CCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence                        1246899999999999877664   55777778887 899999864

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.98  E-value=8.1e-09  Score=95.53  Aligned_cols=135  Identities=20%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      ..+....+.+++....      .++++|||+|||+|..++.+++.|+ +|+++|+++.+++.     .+.|...+.    
T Consensus       103 ~~~tt~~~~~~l~~~~------~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~-----a~~n~~~~~----  166 (254)
T 2nxc_A          103 HHETTRLALKALARHL------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQ-----AEANAKRNG----  166 (254)
T ss_dssp             CSHHHHHHHHHHHHHC------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHH-----HHHHHHHTT----
T ss_pred             CCHHHHHHHHHHHHhc------CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHH-----HHHHHHHcC----
Confidence            3566656666665542      4688999999999999999998888 99999999998854     344443220    


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   +.  +++..+|+.+.                                                    
T Consensus       167 -------------~~--v~~~~~d~~~~----------------------------------------------------  179 (254)
T 2nxc_A          167 -------------VR--PRFLEGSLEAA----------------------------------------------------  179 (254)
T ss_dssp             -------------CC--CEEEESCHHHH----------------------------------------------------
T ss_pred             -------------Cc--EEEEECChhhc----------------------------------------------------
Confidence                         11  44444432110                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCce
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~  332 (351)
                                  ....+||+|++. .++  ..+..+++.+.++|+ |+|++++..-..     .....+.+.+++.|+-
T Consensus       180 ------------~~~~~fD~Vv~n-~~~--~~~~~~l~~~~~~Lk-pgG~lils~~~~-----~~~~~v~~~l~~~Gf~  237 (254)
T 2nxc_A          180 ------------LPFGPFDLLVAN-LYA--ELHAALAPRYREALV-PGGRALLTGILK-----DRAPLVREAMAGAGFR  237 (254)
T ss_dssp             ------------GGGCCEEEEEEE-CCH--HHHHHHHHHHHHHEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTCE
T ss_pred             ------------CcCCCCCEEEEC-CcH--HHHHHHHHHHHHHcC-CCCEEEEEeecc-----CCHHHHHHHHHHCCCE
Confidence                        013579999975 322  235677888888897 899998864221     2467888899999963

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.97  E-value=7.3e-09  Score=101.37  Aligned_cols=150  Identities=23%  Similarity=0.264  Sum_probs=101.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|..++.++.. + ..+|+++|+++.+++. ...|+..+.....   ..     .      ..++++|
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~---g~-----~------~~~~v~~  146 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEV-ARKYVEYHAEKFF---GS-----P------SRSNVRF  146 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHH-HHHTHHHHHHHHH---SS-----T------TCCCEEE
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHhhhhcc---cc-----c------CCCceEE
Confidence            57899999999999999888753 2 3489999999999865 3455554432110   00     0      0136888


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.....                                                         ......+.||+
T Consensus       147 ~~~d~~~l~~~~---------------------------------------------------------~~~~~~~~fD~  169 (383)
T 4fsd_A          147 LKGFIENLATAE---------------------------------------------------------PEGVPDSSVDI  169 (383)
T ss_dssp             EESCTTCGGGCB---------------------------------------------------------SCCCCTTCEEE
T ss_pred             EEccHHHhhhcc---------------------------------------------------------cCCCCCCCEEE
Confidence            888776532100                                                         00023568999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc-------------cc----ccchHHHHHHhhhhcCceeeEE
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------VG----FNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y-------------fg----v~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      |++..+++.....+.+++-+.++|+ |+|++++..-...             ++    ..-...++.+.+++.|+-..++
T Consensus       170 V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~  248 (383)
T 4fsd_A          170 VISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRL  248 (383)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEE
T ss_pred             EEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEE
Confidence            9999999999899999999999997 8999988631100             00    0013488999999999744544


Q ss_pred             ee
Q 018716          337 IK  338 (351)
Q Consensus       337 v~  338 (351)
                      +.
T Consensus       249 ~~  250 (383)
T 4fsd_A          249 VS  250 (383)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.97  E-value=6.4e-09  Score=95.21  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++++|||+|||+|..+..++..+. +|+++|+++.+++..     +.|.                       +++.+..+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~~  100 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA-----RRRN-----------------------PDAVLHHG  100 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH-----HHHC-----------------------TTSEEEEC
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCEEEEC
Confidence            568999999999999999888775 899999999988542     1111                       13555555


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+.+                                                                ....||+|++
T Consensus       101 d~~~~~----------------------------------------------------------------~~~~fD~v~~  116 (263)
T 3pfg_A          101 DMRDFS----------------------------------------------------------------LGRRFSAVTC  116 (263)
T ss_dssp             CTTTCC----------------------------------------------------------------CSCCEEEEEE
T ss_pred             ChHHCC----------------------------------------------------------------ccCCcCEEEE
Confidence            543311                                                                1468999999


Q ss_pred             ec-cccCc---cCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          277 TE-IPYSV---TSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       277 sD-viY~~---~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      .. ++...   .....+++.+.++|+ |+|++++.
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~i~  150 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVL-PDGVVVVE  150 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEE-EEEEEEEC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence            97 87766   356677788888897 89999885

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.95  E-value=3.4e-09  Score=103.93  Aligned_cols=109  Identities=25%  Similarity=0.345  Sum_probs=79.4

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      ..+++++|||+|||+|..++.++..|+++|+++|.+ .|++.. ..|+..|.                     +..++++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~---------------------~~~~v~~  116 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANN---------------------LDHIVEV  116 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTT---------------------CTTTEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcC---------------------CCCeEEE
Confidence            457899999999999999999998888899999999 888542 34443332                     2335777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.+                                                                ..++||+
T Consensus       117 ~~~d~~~~~----------------------------------------------------------------~~~~~D~  132 (376)
T 3r0q_C          117 IEGSVEDIS----------------------------------------------------------------LPEKVDV  132 (376)
T ss_dssp             EESCGGGCC----------------------------------------------------------------CSSCEEE
T ss_pred             EECchhhcC----------------------------------------------------------------cCCcceE
Confidence            666553310                                                                1268999


Q ss_pred             EEEeccccCc---cCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          274 ILLTEIPYSV---TSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       274 ILasDviY~~---~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      |++.=+.|..   ...+.+++.+.++|+ |+|++++....
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~~~~  171 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLK-PTGVMYPSHAR  171 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEESSEEE
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCC-CCeEEEEecCe
Confidence            9984444544   678889999999997 89988775443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.95  E-value=1.9e-08  Score=93.78  Aligned_cols=117  Identities=15%  Similarity=0.215  Sum_probs=83.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      .+..++.+.+   ....++++|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|...          
T Consensus         8 ~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~----------   69 (284)
T 3gu3_A            8 DYVSFLVNTV---WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE-----ARELFRL----------   69 (284)
T ss_dssp             HHHHHHHHTT---SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHH-----HHHHHHS----------
T ss_pred             HHHHHHHHHH---hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHh----------
Confidence            3445555442   12347889999999999999988864 2 2589999999998754     2333321          


Q ss_pred             CCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  257 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~  257 (351)
                               ...++++..+|..+.+                                                       
T Consensus        70 ---------~~~~v~~~~~d~~~~~-------------------------------------------------------   85 (284)
T 3gu3_A           70 ---------LPYDSEFLEGDATEIE-------------------------------------------------------   85 (284)
T ss_dssp             ---------SSSEEEEEESCTTTCC-------------------------------------------------------
T ss_pred             ---------cCCceEEEEcchhhcC-------------------------------------------------------
Confidence                     1225666665543310                                                       


Q ss_pred             hhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          258 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       258 W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                               ....||+|++..+++.....+.+++-+.++|+ |+|.+++..
T Consensus        86 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  126 (284)
T 3gu3_A           86 ---------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFE  126 (284)
T ss_dssp             ---------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ---------cCCCeeEEEECChhhcCCCHHHHHHHHHHHcC-CCCEEEEEe
Confidence                     13589999999999999999999999999997 899998764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.95  E-value=4.8e-09  Score=92.53  Aligned_cols=130  Identities=18%  Similarity=0.193  Sum_probs=88.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..+..++..|. +|+++|+++.+++..     +.|                        ..+.+..
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~------------------------~~~~~~~  100 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAA-----RAA------------------------GAGEVHL  100 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHH-----HHT------------------------CSSCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHH-----HHh------------------------cccccch
Confidence            3568999999999999999887776 899999999887532     111                        0123333


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      ++......                                                           .......+||+|+
T Consensus       101 ~~~~~~~~-----------------------------------------------------------~~~~~~~~fD~v~  121 (227)
T 3e8s_A          101 ASYAQLAE-----------------------------------------------------------AKVPVGKDYDLIC  121 (227)
T ss_dssp             CCHHHHHT-----------------------------------------------------------TCSCCCCCEEEEE
T ss_pred             hhHHhhcc-----------------------------------------------------------cccccCCCccEEE
Confidence            33221100                                                           0001245699999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----------------ccccc----------chHHHHHHhhhhc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFN----------NAARHLRSLVDEE  329 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----------------yfgv~----------gg~~~F~~~ve~~  329 (351)
                      ++.+++ ......+++.+.++|+ |+|++++..-..                +.+..          -+..++.+.+++.
T Consensus       122 ~~~~l~-~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  199 (227)
T 3e8s_A          122 ANFALL-HQDIIELLSAMRTLLV-PGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA  199 (227)
T ss_dssp             EESCCC-SSCCHHHHHHHHHTEE-EEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT
T ss_pred             ECchhh-hhhHHHHHHHHHHHhC-CCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHc
Confidence            999999 7778889999999997 899999874211                11111          1578899999999


Q ss_pred             CceeeEE
Q 018716          330 GIFGAHL  336 (351)
Q Consensus       330 G~~~~~~  336 (351)
                      |+-..++
T Consensus       200 Gf~~~~~  206 (227)
T 3e8s_A          200 GLRLVSL  206 (227)
T ss_dssp             TEEEEEE
T ss_pred             CCeEEEE
Confidence            9744443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.95  E-value=2.9e-08  Score=93.61  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccC
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  175 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~  175 (351)
                      +...+.+.+....    ...++.+|||+|||+|...+.++.. |. +|+++|+++.+++.     .+.+....       
T Consensus        74 ~~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-------  136 (318)
T 2fk8_A           74 AQYAKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHAR-----CEQVLASI-------  136 (318)
T ss_dssp             HHHHHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHTS-------
T ss_pred             HHHHHHHHHHHhc----CCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHH-----HHHHHHhc-------
Confidence            3445555665542    2357889999999999999888865 76 89999999998854     23332210       


Q ss_pred             CCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 018716          176 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  255 (351)
Q Consensus       176 ~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~  255 (351)
                                .+..++++..+|+.+                                                       
T Consensus       137 ----------~~~~~v~~~~~d~~~-------------------------------------------------------  151 (318)
T 2fk8_A          137 ----------DTNRSRQVLLQGWED-------------------------------------------------------  151 (318)
T ss_dssp             ----------CCSSCEEEEESCGGG-------------------------------------------------------
T ss_pred             ----------CCCCceEEEECChHH-------------------------------------------------------
Confidence                      012345554433211                                                       


Q ss_pred             hhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          256 RAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       256 ~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                                 ..+.||+|++.++++..  +....+++.+.++|+ |+|++++.
T Consensus       152 -----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~  193 (318)
T 2fk8_A          152 -----------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQ  193 (318)
T ss_dssp             -----------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEE
T ss_pred             -----------CCCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence                       12579999999999877  678889999999997 89998875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.95  E-value=1.2e-08  Score=87.63  Aligned_cols=122  Identities=18%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..+..++..+. +|+++|+++.+++..     +.|.                       +++++..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a-----~~~~-----------------------~~~~~~~   95 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYA-----KQDF-----------------------PEARWVV   95 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHC-----------------------TTSEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHH-----HHhC-----------------------CCCcEEE
Confidence            3678999999999999998887765 899999999887532     2221                       1244444


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.+                                                               ...+.||+|+
T Consensus        96 ~d~~~~~---------------------------------------------------------------~~~~~~D~i~  112 (195)
T 3cgg_A           96 GDLSVDQ---------------------------------------------------------------ISETDFDLIV  112 (195)
T ss_dssp             CCTTTSC---------------------------------------------------------------CCCCCEEEEE
T ss_pred             cccccCC---------------------------------------------------------------CCCCceeEEE
Confidence            4432210                                                               1246799999


Q ss_pred             Ee-ccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCcee
Q 018716          276 LT-EIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       276 as-DviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~  333 (351)
                      +. ++++..  +....+++.+.++|+ |+|++++......   +-...++.+.+++.|+-.
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~-~~G~l~~~~~~~~---~~~~~~~~~~l~~~Gf~~  169 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALG-ADGRAVIGFGAGR---GWVFGDFLEVAERVGLEL  169 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEETTS---SCCHHHHHHHHHHHTEEE
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhC-CCCEEEEEeCCCC---CcCHHHHHHHHHHcCCEE
Confidence            98 777654  445778888888897 8999998753321   125788999999999633

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.94  E-value=4.2e-09  Score=101.91  Aligned_cols=104  Identities=27%  Similarity=0.325  Sum_probs=75.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ..++++|||+|||+|..++.++..|+.+|++.|+++ +++. .+.|+..|.                     +..++.+.
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~-a~~~~~~~~---------------------~~~~i~~~  118 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQ-AMDIIRLNK---------------------LEDTITLI  118 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHH-HHHHHHHTT---------------------CTTTEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHH-HHHHHHHcC---------------------CCCcEEEE
Confidence            467899999999999999999988878999999996 7754 233433321                     22356766


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ....+||+|
T Consensus       119 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I  135 (340)
T 2fyt_A          119 KGKIEEVH---------------------------------------------------------------LPVEKVDVI  135 (340)
T ss_dssp             ESCTTTSC---------------------------------------------------------------CSCSCEEEE
T ss_pred             EeeHHHhc---------------------------------------------------------------CCCCcEEEE
Confidence            66543311                                                               123679999


Q ss_pred             EEecc---ccCccCHHHHHHHHHHHcCCCCeEEE
Q 018716          275 LLTEI---PYSVTSLKKLYLLIKKCLRPPYGVVY  305 (351)
Q Consensus       275 LasDv---iY~~~~~~~L~~~l~~~L~~p~gv~y  305 (351)
                      ++.-+   +..+...+.+++.+.++|+ |+|+++
T Consensus       136 vs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  168 (340)
T 2fyt_A          136 ISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY  168 (340)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHHhhcC-CCcEEE
Confidence            98764   5556677888888889997 889876

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.94  E-value=1.9e-08  Score=93.55  Aligned_cols=148  Identities=13%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      +.+..+++++...+.     .++.+|||+|||+|..++.++. .+..+|+++|+++.+++. ...|+..|.         
T Consensus        93 ~~te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~-a~~n~~~~~---------  157 (276)
T 2b3t_A           93 PDTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSL-AQRNAQHLA---------  157 (276)
T ss_dssp             TTHHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHH-HHHHHHHHT---------
T ss_pred             chHHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHcC---------
Confidence            345567777766531     3578999999999999998885 344589999999999864 234443321         


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                                  + .++++..+||.+.                                                     
T Consensus       158 ------------~-~~v~~~~~d~~~~-----------------------------------------------------  171 (276)
T 2b3t_A          158 ------------I-KNIHILQSDWFSA-----------------------------------------------------  171 (276)
T ss_dssp             ------------C-CSEEEECCSTTGG-----------------------------------------------------
T ss_pred             ------------C-CceEEEEcchhhh-----------------------------------------------------
Confidence                        1 1477776666331                                                     


Q ss_pred             chhhhhccccccCCCCccEEEEe-------------ccccCc------------cCHHHHHHHHHHHcCCCCeEEEEEec
Q 018716          255 SRAWERASEADQGEGGYDVILLT-------------EIPYSV------------TSLKKLYLLIKKCLRPPYGVVYLATK  309 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILas-------------DviY~~------------~~~~~L~~~l~~~L~~p~gv~ylA~K  309 (351)
                                 ...++||+|++.             ++++..            ..+..+++.+.++|+ |+|++++...
T Consensus       172 -----------~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~~  239 (276)
T 2b3t_A          172 -----------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEHG  239 (276)
T ss_dssp             -----------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEECC
T ss_pred             -----------cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence                       013468888875             333222            245677777778887 8999888642


Q ss_pred             cccccccchHHHHHHhhhhcCceeeEEeeecCC
Q 018716          310 KNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTD  342 (351)
Q Consensus       310 ~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e~~d  342 (351)
                      ..      ...++.+.+++.|+-..++..+...
T Consensus       240 ~~------~~~~~~~~l~~~Gf~~v~~~~d~~g  266 (276)
T 2b3t_A          240 WQ------QGEAVRQAFILAGYHDVETCRDYGD  266 (276)
T ss_dssp             SS------CHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred             ch------HHHHHHHHHHHCCCcEEEEEecCCC
Confidence            21      3567778888888745555555543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.94  E-value=1.6e-08  Score=94.86  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      ....+.+.+..    ...++.+|||+|||+|..++.++.. | .+|+++|+++.+++.     .+.|....         
T Consensus        58 ~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~-----a~~~~~~~---------  118 (302)
T 3hem_A           58 YAKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAH-----DKAMFDEV---------  118 (302)
T ss_dssp             HHHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHH-----HHHHHHHS---------
T ss_pred             HHHHHHHHHHc----CCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHH-----HHHHHHhc---------
Confidence            33444454442    2347889999999999999998875 7 589999999999854     23333211         


Q ss_pred             CCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  257 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~  257 (351)
                              .+..++++..+|+.+                                                         
T Consensus       119 --------~~~~~v~~~~~d~~~---------------------------------------------------------  133 (302)
T 3hem_A          119 --------DSPRRKEVRIQGWEE---------------------------------------------------------  133 (302)
T ss_dssp             --------CCSSCEEEEECCGGG---------------------------------------------------------
T ss_pred             --------CCCCceEEEECCHHH---------------------------------------------------------
Confidence                    122356665544321                                                         


Q ss_pred             hhhccccccCCCCccEEEEeccccCc---------cCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          258 WERASEADQGEGGYDVILLTEIPYSV---------TSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       258 W~~~~e~~~~~~~~DlILasDviY~~---------~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                              . .+.||+|++..++.+.         ..++.+++.+.++|+ |+|++++..
T Consensus       134 --------~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  183 (302)
T 3hem_A          134 --------F-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHT  183 (302)
T ss_dssp             --------C-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEE
T ss_pred             --------c-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence                    1 4679999999998777         556888999999997 899988763

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.94  E-value=2.9e-09  Score=96.73  Aligned_cols=66  Identities=17%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             CCccEEEEecccc----CccCHHHHHHHHHHHcCCCCeEEEEEec--ccccccc--------chHHHHHHhhhhcCceee
Q 018716          269 GGYDVILLTEIPY----SVTSLKKLYLLIKKCLRPPYGVVYLATK--KNYVGFN--------NAARHLRSLVDEEGIFGA  334 (351)
Q Consensus       269 ~~~DlILasDviY----~~~~~~~L~~~l~~~L~~p~gv~ylA~K--~~yfgv~--------gg~~~F~~~ve~~G~~~~  334 (351)
                      +.||+|++..+++    .......+++-+.++|+ |+|++++...  ..|+..+        -...++.+.+++.|+-..
T Consensus       156 ~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  234 (265)
T 2i62_A          156 PPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK-PGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIE  234 (265)
T ss_dssp             CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEE
T ss_pred             CCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEE
Confidence            6899999999998    66677788888888897 8999888641  1111111        145688899999997333


Q ss_pred             E
Q 018716          335 H  335 (351)
Q Consensus       335 ~  335 (351)
                      +
T Consensus       235 ~  235 (265)
T 2i62_A          235 Q  235 (265)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.94  E-value=8.1e-09  Score=101.91  Aligned_cols=127  Identities=22%  Similarity=0.270  Sum_probs=88.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      ..+.+..|.+++.....  ....++++|||+|||+|..++.++..|+ +|+++|+++.+++.     .+.|...+     
T Consensus       212 ~d~~t~~ll~~l~~~l~--~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~-----A~~n~~~~-----  278 (381)
T 3dmg_A          212 VDPASLLLLEALQERLG--PEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLS-----LQKGLEAN-----  278 (381)
T ss_dssp             CCHHHHHHHHHHHHHHC--TTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHH-----HHHHHHHT-----
T ss_pred             CCHHHHHHHHHHHHhhc--ccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHHc-----
Confidence            34566677777766531  1235788999999999999999998876 99999999999865     34444322     


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                    ..++++..+|+.+..                                                   
T Consensus       279 --------------~~~v~~~~~D~~~~~---------------------------------------------------  293 (381)
T 3dmg_A          279 --------------ALKAQALHSDVDEAL---------------------------------------------------  293 (381)
T ss_dssp             --------------TCCCEEEECSTTTTS---------------------------------------------------
T ss_pred             --------------CCCeEEEEcchhhcc---------------------------------------------------
Confidence                          012555555443210                                                   


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccC-----ccCHHHHHHHHHHHcCCCCeEEEEEeccc
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYS-----VTSLKKLYLLIKKCLRPPYGVVYLATKKN  311 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~-----~~~~~~L~~~l~~~L~~p~gv~ylA~K~~  311 (351)
                                  .....||+|++......     ......+++.+.++|+ |+|++++.+.++
T Consensus       294 ------------~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~n~~  343 (381)
T 3dmg_A          294 ------------TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR-PGGVFFLVSNPF  343 (381)
T ss_dssp             ------------CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEECTT
T ss_pred             ------------ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcC-cCcEEEEEEcCC
Confidence                        12368999998666554     4556778888888997 899999986554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.94  E-value=2.4e-09  Score=93.71  Aligned_cols=54  Identities=22%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      ..+++++...+.   ...++++|||+|||+|..++.++..+ ..+|+++|+++.+++.
T Consensus        15 ~~~~~~~~~~l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~   69 (215)
T 4dzr_A           15 EVLVEEAIRFLK---RMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAV   69 (215)
T ss_dssp             HHHHHHHHHHHT---TCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------
T ss_pred             HHHHHHHHHHhh---hcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            466666666542   12578899999999999999988764 3489999999999854

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.93  E-value=3.6e-09  Score=94.22  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ++++|||+|||+|..++.++..|+.+|++.|+++.+++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~   91 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQ   91 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHH
Confidence            678999999999999998777777799999999999865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.92  E-value=2.8e-08  Score=87.43  Aligned_cols=99  Identities=21%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..|. +|++.|+++.+++....         .                  -.+++++..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---------~------------------~~~~~~~~~   96 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---------H------------------GLDNVEFRQ   96 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---------G------------------CCTTEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---------c------------------CCCCeEEEe
Confidence            4667999999999999998887765 89999999998854211         0                  012466655


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|....                                                                ...+.||+|+
T Consensus        97 ~d~~~~----------------------------------------------------------------~~~~~~D~v~  112 (218)
T 3ou2_A           97 QDLFDW----------------------------------------------------------------TPDRQWDAVF  112 (218)
T ss_dssp             CCTTSC----------------------------------------------------------------CCSSCEEEEE
T ss_pred             cccccC----------------------------------------------------------------CCCCceeEEE
Confidence            543221                                                                1246899999


Q ss_pred             EeccccCccC--HHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ++.+++....  ...+++.+.++|+ |+|++++.
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~  145 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVA-PGGVVEFV  145 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcC-CCeEEEEE
Confidence            9999988776  4788888888997 89998887

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.92  E-value=1.2e-08  Score=88.60  Aligned_cols=103  Identities=23%  Similarity=0.350  Sum_probs=75.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..|. +|+++|+++.+++.     .+.|...+.                 + +++++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~~~~~~   86 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIAN-----VERIKSIEN-----------------L-DNLHTRV   86 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHHT-----------------C-TTEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHH-----HHHHHHhCC-----------------C-CCcEEEE
Confidence            4678999999999999999887765 89999999998854     233332110                 1 1355554


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.                                                               .. ...||+|+
T Consensus        87 ~d~~~~---------------------------------------------------------------~~-~~~~D~v~  102 (199)
T 2xvm_A           87 VDLNNL---------------------------------------------------------------TF-DRQYDFIL  102 (199)
T ss_dssp             CCGGGC---------------------------------------------------------------CC-CCCEEEEE
T ss_pred             cchhhC---------------------------------------------------------------CC-CCCceEEE
Confidence            443221                                                               01 46799999


Q ss_pred             EeccccCcc--CHHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +..+++...  ....+++.+.++|+ |+|.+++.
T Consensus       103 ~~~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~  135 (199)
T 2xvm_A          103 STVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIV  135 (199)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence            999998765  78889999999997 89987765

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.92  E-value=3.1e-09  Score=98.32  Aligned_cols=41  Identities=10%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++++|||||||+|+..+.++..|+.+|+++|+|+.|++.
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~   93 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREE   93 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHH
Confidence            46789999999999988887777787789999999999965

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.92  E-value=2.5e-08  Score=89.11  Aligned_cols=39  Identities=28%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..+..++..|. +|+++|+++.+++.
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~   74 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSE   74 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHH
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHH
Confidence            3788999999999999998887775 89999999999854

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.91  E-value=1.4e-08  Score=95.22  Aligned_cols=128  Identities=15%  Similarity=0.148  Sum_probs=86.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++++|||+|||+|..++.++..|+.+|++.|+++.+++. ...|+..|.                     +..++++..+
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~-a~~n~~~n~---------------------~~~~v~~~~~  182 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLNK---------------------VEDRMSAYNM  182 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHTT---------------------CTTTEEEECS
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCceEEEEEC
Confidence            589999999999999999998887689999999999865 345555442                     2224666665


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+..                                                                ....||+|++
T Consensus       183 D~~~~~----------------------------------------------------------------~~~~fD~Vi~  198 (278)
T 2frn_A          183 DNRDFP----------------------------------------------------------------GENIADRILM  198 (278)
T ss_dssp             CTTTCC----------------------------------------------------------------CCSCEEEEEE
T ss_pred             CHHHhc----------------------------------------------------------------ccCCccEEEE
Confidence            543310                                                                1457999987


Q ss_pred             eccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc-cccccchHHHHHHhhhhcCceeeEE
Q 018716          277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-YVGFNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~-yfgv~gg~~~F~~~ve~~G~~~~~~  336 (351)
                       |..+.   ...+++.+.++|+ |+|++++..-.. ..........+.+.+++.|+ ..+.
T Consensus       199 -~~p~~---~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~-~~~~  253 (278)
T 2frn_A          199 -GYVVR---THEFIPKALSIAK-DGAIIHYHNTVPEKLMPREPFETFKRITKEYGY-DVEK  253 (278)
T ss_dssp             -CCCSS---GGGGHHHHHHHEE-EEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC-EEEE
T ss_pred             -CCchh---HHHHHHHHHHHCC-CCeEEEEEEeeccccccccHHHHHHHHHHHcCC-eeEE
Confidence             33333   3456666777887 899888754221 11123356777888888885 5544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.91  E-value=3.1e-08  Score=85.77  Aligned_cols=51  Identities=16%  Similarity=0.107  Sum_probs=39.9

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+++.+...     ...++.+|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus         9 ~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~   59 (185)
T 3mti_A            9 IHMSHDFLAE-----VLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGK   59 (185)
T ss_dssp             HHHHHHHHHT-----TCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHH
T ss_pred             HHHHHHHHHH-----hCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence            4455555443     22468899999999999999998774 589999999999864

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.91  E-value=1.4e-08  Score=95.06  Aligned_cols=122  Identities=18%  Similarity=0.176  Sum_probs=85.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      .+.+.|....     .-++++|||+|||+|..++.++.  .+..+|+++|+++.+++.     .+.|.....        
T Consensus        24 ~~~~~l~~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~~--------   85 (299)
T 3g5t_A           24 DFYKMIDEYH-----DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKT-----AEVIKEGSP--------   85 (299)
T ss_dssp             HHHHHHHHHC-----CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHH-----HHHHHHHCC--------
T ss_pred             HHHHHHHHHh-----cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHH-----HHHHHHhcc--------
Confidence            3555555542     13788999999999999998884  345699999999999854     233332110        


Q ss_pred             CCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  257 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~  257 (351)
                              ....+++|..+|..+.+. .                        +                           
T Consensus        86 --------~~~~~v~~~~~d~~~~~~-~------------------------~---------------------------  105 (299)
T 3g5t_A           86 --------DTYKNVSFKISSSDDFKF-L------------------------G---------------------------  105 (299)
T ss_dssp             ---------CCTTEEEEECCTTCCGG-G------------------------C---------------------------
T ss_pred             --------CCCCceEEEEcCHHhCCc-c------------------------c---------------------------
Confidence                    012468888877765320 0                        0                           


Q ss_pred             hhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEE
Q 018716          258 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL  306 (351)
Q Consensus       258 W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~yl  306 (351)
                           ......+.||+|+++.+++.. ....+++.+.++|+ |+|++++
T Consensus       106 -----~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk-pgG~l~i  147 (299)
T 3g5t_A          106 -----ADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLR-KDGTIAI  147 (299)
T ss_dssp             -----TTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE-EEEEEEE
T ss_pred             -----cccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC-CCcEEEE
Confidence                 000124689999999999999 89999999999997 8998877

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.91  E-value=9.4e-09  Score=95.36  Aligned_cols=102  Identities=20%  Similarity=0.226  Sum_probs=76.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..|. +|+++|+++.+++.     .+.|...+                 .+  ++++..
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~-----a~~~~~~~-----------------~~--~~~~~~  173 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAF-----LNETKEKE-----------------NL--NISTAL  173 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-----------------TC--CEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHH-----HHHHHHHc-----------------CC--ceEEEE
Confidence            3789999999999999999998876 89999999999854     23333321                 01  455555


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|....                                                                ...+.||+|+
T Consensus       174 ~d~~~~----------------------------------------------------------------~~~~~fD~i~  189 (286)
T 3m70_A          174 YDINAA----------------------------------------------------------------NIQENYDFIV  189 (286)
T ss_dssp             CCGGGC----------------------------------------------------------------CCCSCEEEEE
T ss_pred             eccccc----------------------------------------------------------------cccCCccEEE
Confidence            443221                                                                0146899999


Q ss_pred             EeccccC--ccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYS--VTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~--~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +..+++.  .+..+.+++.+.++|+ |+|++++.
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~  222 (286)
T 3m70_A          190 STVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIV  222 (286)
T ss_dssp             ECSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEE
T ss_pred             EccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence            9999984  4668899999999997 89987764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.90  E-value=1.2e-08  Score=94.31  Aligned_cols=108  Identities=24%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..|..+|+++|+++.+++.     .+.|....                 .+..++++..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  120 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIND-----ARVRARNM-----------------KRRFKVFFRA  120 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHH-----HHHHHHTS-----------------CCSSEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCccEEEEE
Confidence            4678999999999998888877776799999999998854     23333211                 0123566666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.+                         +                                     ...+.||+|+
T Consensus       121 ~d~~~~~-------------------------~-------------------------------------~~~~~fD~v~  138 (298)
T 1ri5_A          121 QDSYGRH-------------------------M-------------------------------------DLGKEFDVIS  138 (298)
T ss_dssp             SCTTTSC-------------------------C-------------------------------------CCSSCEEEEE
T ss_pred             CCccccc-------------------------c-------------------------------------CCCCCcCEEE
Confidence            5543321                         0                                     0246799999


Q ss_pred             EeccccC----ccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYS----VTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~----~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +..++..    ......+++.+.++|+ |+|++++..
T Consensus       139 ~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  174 (298)
T 1ri5_A          139 SQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTV  174 (298)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ECchhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence            9999854    4556778888888897 899988764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.90  E-value=1.9e-08  Score=89.72  Aligned_cols=50  Identities=24%  Similarity=0.200  Sum_probs=40.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .|.+++...     ...++.+|||+|||+|...+.++..|. +|++.|+|+.|++.
T Consensus        10 ~l~~~~~~l-----~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~   59 (203)
T 1pjz_A           10 DLQQYWSSL-----NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVER   59 (203)
T ss_dssp             HHHHHHHHH-----CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHH
T ss_pred             HHHHHHHhc-----ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            455665443     123688999999999999999888886 89999999999864

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.89  E-value=8.4e-09  Score=100.02  Aligned_cols=105  Identities=27%  Similarity=0.307  Sum_probs=77.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .+++++|||+|||+|..++.++..|+.+|++.|+++ +++. .+.|+..|.                     +..++.+.
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-a~~~~~~~~---------------------~~~~v~~~  120 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-AVKIVKANK---------------------LDHVVTII  120 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTT---------------------CTTTEEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-HHHHHHHcC---------------------CCCcEEEE
Confidence            368899999999999999999988888999999995 7754 233333331                     23357777


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.+.+                                                               ...++||+|
T Consensus       121 ~~d~~~~~---------------------------------------------------------------~~~~~fD~I  137 (349)
T 3q7e_A          121 KGKVEEVE---------------------------------------------------------------LPVEKVDII  137 (349)
T ss_dssp             ESCTTTCC---------------------------------------------------------------CSSSCEEEE
T ss_pred             ECcHHHcc---------------------------------------------------------------CCCCceEEE
Confidence            77765421                                                               124689999


Q ss_pred             EEecc---ccCccCHHHHHHHHHHHcCCCCeEEEE
Q 018716          275 LLTEI---PYSVTSLKKLYLLIKKCLRPPYGVVYL  306 (351)
Q Consensus       275 LasDv---iY~~~~~~~L~~~l~~~L~~p~gv~yl  306 (351)
                      ++.-+   +..+...+.+++.+.++|+ |+|+++.
T Consensus       138 is~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li~  171 (349)
T 3q7e_A          138 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIFP  171 (349)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred             EEccccccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence            98654   4455888999999999997 8898653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.89  E-value=6e-08  Score=86.66  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++.+++.     .+.|...+                 .++.++++..
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~-----a~~~~~~~-----------------g~~~~v~~~~  110 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIEN-----IQKNIDTY-----------------GLSPRMRAVQ  110 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCCCEEEEe
Confidence            468899999999999999998874 589999999999865     23343321                 0122466665


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+..                                                               .....||+|+
T Consensus       111 ~d~~~~~---------------------------------------------------------------~~~~~~D~v~  127 (204)
T 3njr_A          111 GTAPAAL---------------------------------------------------------------ADLPLPEAVF  127 (204)
T ss_dssp             SCTTGGG---------------------------------------------------------------TTSCCCSEEE
T ss_pred             Cchhhhc---------------------------------------------------------------ccCCCCCEEE
Confidence            5543200                                                               0124689999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      ..-..    ..+ +++.+.++|+ |+|++++..-.     .....++.+.+++.|+
T Consensus       128 ~~~~~----~~~-~l~~~~~~Lk-pgG~lv~~~~~-----~~~~~~~~~~l~~~g~  172 (204)
T 3njr_A          128 IGGGG----SQA-LYDRLWEWLA-PGTRIVANAVT-----LESETLLTQLHARHGG  172 (204)
T ss_dssp             ECSCC----CHH-HHHHHHHHSC-TTCEEEEEECS-----HHHHHHHHHHHHHHCS
T ss_pred             ECCcc----cHH-HHHHHHHhcC-CCcEEEEEecC-----cccHHHHHHHHHhCCC
Confidence            76533    345 8888888897 89999887533     2357788888888883

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.89  E-value=9.4e-09  Score=93.23  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=78.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..+. +|+++|+++.+++..     +.|.. .                  ..+++++..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~~-~------------------~~~~~~~~~   92 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVF-----RQKIA-G------------------VDRKVQVVQ   92 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHH-----HHHTT-T------------------SCTTEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHH-----HHHhh-c------------------cCCceEEEE
Confidence            4678999999999999998887764 899999999988542     22220 0                  123567766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+...+                                                               ...+.||+|+
T Consensus        93 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  109 (263)
T 2yqz_A           93 ADARAIP---------------------------------------------------------------LPDESVHGVI  109 (263)
T ss_dssp             SCTTSCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred             cccccCC---------------------------------------------------------------CCCCCeeEEE
Confidence            6654321                                                               1246799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +..+++.....+.+++.+.++|+ |+|.+++.
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLK-PGGALLEG  140 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ECCchhhcCCHHHHHHHHHHHCC-CCcEEEEE
Confidence            99999998888999999999997 89988876

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.88  E-value=4.4e-08  Score=87.29  Aligned_cols=130  Identities=14%  Similarity=0.044  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .+.+|||||||+|..++.++... ..+|+++|+++.+++.. ..|+..|.                     + .+++++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a-~~~~~~~~---------------------~-~~v~~~~   97 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-LDKVLEVG---------------------V-PNIKLLW   97 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHHHHC---------------------C-SSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHH-HHHHHHcC---------------------C-CCEEEEe
Confidence            57899999999999999888653 35899999999998642 33333221                     1 3577877


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.+..                                                             ...+.||+|+
T Consensus        98 ~d~~~~~~~-------------------------------------------------------------~~~~~~D~i~  116 (214)
T 1yzh_A           98 VDGSDLTDY-------------------------------------------------------------FEDGEIDRLY  116 (214)
T ss_dssp             CCSSCGGGT-------------------------------------------------------------SCTTCCSEEE
T ss_pred             CCHHHHHhh-------------------------------------------------------------cCCCCCCEEE
Confidence            776542210                                                             0134688888


Q ss_pred             EeccccCcc--------CHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEE
Q 018716          276 LTEIPYSVT--------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       276 asDviY~~~--------~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +.-..-...        ..+.+++.+.++|+ |+|++++.+-...     -.....+.+++.|+-..++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~~~~  179 (214)
T 1yzh_A          117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKTDNRG-----LFEYSLVSFSQYGMKLNGV  179 (214)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEESCHH-----HHHHHHHHHHHHTCEEEEE
T ss_pred             EECCCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEeCCHH-----HHHHHHHHHHHCCCeeeec
Confidence            762211110        34678888999997 8999999863321     2355667777888643333

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.88  E-value=2.8e-08  Score=87.06  Aligned_cols=123  Identities=18%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++ +|||+|||+|..++.++..|. +|+++|+++.+++.     .+.|....                   ..++.+..+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~~   83 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAK-----AKQLAQEK-------------------GVKITTVQS   83 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHH-----HHHHHHHH-------------------TCCEEEECC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHH-----HHHHHHhc-------------------CCceEEEEc
Confidence            45 999999999999998887776 89999999998854     23333211                   013555444


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |....+                                                               ...+.||+|++
T Consensus        84 d~~~~~---------------------------------------------------------------~~~~~fD~v~~  100 (202)
T 2kw5_A           84 NLADFD---------------------------------------------------------------IVADAWEGIVS  100 (202)
T ss_dssp             BTTTBS---------------------------------------------------------------CCTTTCSEEEE
T ss_pred             ChhhcC---------------------------------------------------------------CCcCCccEEEE
Confidence            432210                                                               12468999999


Q ss_pred             eccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----c-cc------ccchHHHHHHhhhhcCc
Q 018716          277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----Y-VG------FNNAARHLRSLVDEEGI  331 (351)
Q Consensus       277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----y-fg------v~gg~~~F~~~ve~~G~  331 (351)
                      +-+.+.......+++.+.++|+ |+|++++..-..    | .+      ..-+..++.+.++  |+
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf  163 (202)
T 2kw5_A          101 IFCHLPSSLRQQLYPKVYQGLK-PGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SL  163 (202)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTCC-SSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SS
T ss_pred             EhhcCCHHHHHHHHHHHHHhcC-CCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--Cc
Confidence            8665555667788888888897 899988873110    0 00      0125677888887  74

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.88  E-value=8.7e-09  Score=91.81  Aligned_cols=109  Identities=14%  Similarity=0.224  Sum_probs=76.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..++.++..|+.+|++.|+++.+++.     .+.|...+.                 + .++++..
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~-----a~~~~~~~~-----------------~-~~v~~~~  109 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ-----LIKNLATLK-----------------A-GNARVVN  109 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH-----HHHHHHHTT-----------------C-CSEEEEC
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------C-CcEEEEE
Confidence            3678999999999999998777777799999999999865     334443220                 1 2466655


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.   +                                                           ......||+|+
T Consensus       110 ~D~~~~---~-----------------------------------------------------------~~~~~~fD~V~  127 (202)
T 2fpo_A          110 SNAMSF---L-----------------------------------------------------------AQKGTPHNIVF  127 (202)
T ss_dssp             SCHHHH---H-----------------------------------------------------------SSCCCCEEEEE
T ss_pred             CCHHHH---H-----------------------------------------------------------hhcCCCCCEEE
Confidence            543220   0                                                           01235799998


Q ss_pred             EeccccCccCHHHHHHHHHHH--cCCCCeEEEEEeccc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKKN  311 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~--L~~p~gv~ylA~K~~  311 (351)
                      + |..|.....+.+++.+.+.  |+ |+|++++.....
T Consensus       128 ~-~~p~~~~~~~~~l~~l~~~~~L~-pgG~l~i~~~~~  163 (202)
T 2fpo_A          128 V-DPPFRRGLLEETINLLEDNGWLA-DEALIYVESEVE  163 (202)
T ss_dssp             E-CCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEEGG
T ss_pred             E-CCCCCCCcHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence            6 4558877888888888764  76 899999876543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.87  E-value=1.5e-08  Score=88.87  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcccCCHHHHH-HHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIF-ACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~-aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|...+. ++..|. +|++.|+++.+++..     +.|....                   ..++++.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a-----~~~~~~~-------------------~~~~~~~   76 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKA-----ENFSREN-------------------NFKLNIS   76 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHH-----HHHHHHH-------------------TCCCCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHH-----HHHHHhc-------------------CCceEEE
Confidence            3678999999999987543 344554 899999999998542     2332211                   0134454


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               ...+.||+|
T Consensus        77 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v   93 (209)
T 2p8j_A           77 KGDIRKLP---------------------------------------------------------------FKDESMSFV   93 (209)
T ss_dssp             ECCTTSCC---------------------------------------------------------------SCTTCEEEE
T ss_pred             ECchhhCC---------------------------------------------------------------CCCCceeEE
Confidence            44433210                                                               124679999


Q ss_pred             EEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          275 LLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       275 LasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      ++..++++.  .....+++.+.++|+ |+|++++..
T Consensus        94 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  128 (209)
T 2p8j_A           94 YSYGTIFHMRKNDVKEAIDEIKRVLK-PGGLACINF  128 (209)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEcChHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence            999999887  567788888888997 899988763

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.87  E-value=5.1e-08  Score=84.46  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      +.+..|++++...      ..++++|||+|||+|..++.++..+  +|+++|+++.+++
T Consensus         8 ~~~~~l~~~l~~~------~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~   58 (170)
T 3q87_B            8 EDTYTLMDALERE------GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALE   58 (170)
T ss_dssp             HHHHHHHHHHHHH------TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHH
T ss_pred             ccHHHHHHHHHhh------cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHh
Confidence            3445666776442      2467899999999999999999877  9999999999884

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.86  E-value=1.3e-08  Score=97.86  Aligned_cols=103  Identities=22%  Similarity=0.310  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..++.++..|+.+|++.|++ .+++. ...|+..|.                     +..++++..
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~-a~~~~~~~~---------------------~~~~i~~~~   93 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEM-AKELVELNG---------------------FSDKITLLR   93 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHH-HHHHHHHTT---------------------CTTTEEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHH-HHHHHHHcC---------------------CCCCEEEEE
Confidence            5789999999999999999998888899999999 47743 234433331                     233567666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.+                                                               ....+||+|+
T Consensus        94 ~d~~~~~---------------------------------------------------------------~~~~~~D~Iv  110 (328)
T 1g6q_1           94 GKLEDVH---------------------------------------------------------------LPFPKVDIII  110 (328)
T ss_dssp             SCTTTSC---------------------------------------------------------------CSSSCEEEEE
T ss_pred             Cchhhcc---------------------------------------------------------------CCCCcccEEE
Confidence            5543311                                                               1235799999


Q ss_pred             Eec---cccCccCHHHHHHHHHHHcCCCCeEEE
Q 018716          276 LTE---IPYSVTSLKKLYLLIKKCLRPPYGVVY  305 (351)
Q Consensus       276 asD---viY~~~~~~~L~~~l~~~L~~p~gv~y  305 (351)
                      +.-   .+..+...+.++..++++|+ |+|+++
T Consensus       111 s~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  142 (328)
T 1g6q_1          111 SEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EeCchhhcccHHHHHHHHHHHHhhcC-CCeEEE
Confidence            863   44566778888888889997 889876

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.86  E-value=1.5e-08  Score=94.66  Aligned_cols=118  Identities=18%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             CCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716           87 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus        87 ~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      .|.......+.  .|.++|....      -.+.+|||||||+|..+..++..+. +|+++|+|+.|++...         
T Consensus        17 ~Y~~~Rp~yp~--~l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~---------   78 (257)
T 4hg2_A           17 AYRAFRPRYPR--ALFRWLGEVA------PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQAL---------   78 (257)
T ss_dssp             ---CCCCCCCH--HHHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCC---------
T ss_pred             HHHHHCCCcHH--HHHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhh---------
Confidence            34443334443  4677787653      2457999999999999998888775 8999999999874310         


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 018716          167 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  246 (351)
Q Consensus       167 ~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~  246 (351)
                                          -.+++++..++.+..+                                            
T Consensus        79 --------------------~~~~v~~~~~~~e~~~--------------------------------------------   94 (257)
T 4hg2_A           79 --------------------RHPRVTYAVAPAEDTG--------------------------------------------   94 (257)
T ss_dssp             --------------------CCTTEEEEECCTTCCC--------------------------------------------
T ss_pred             --------------------hcCCceeehhhhhhhc--------------------------------------------
Confidence                                0135666665543321                                            


Q ss_pred             cccccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          247 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       247 ~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                                         ..++.||+|+++.++...+ .+.+++-+.+.|+ |+|++.+.
T Consensus        95 -------------------~~~~sfD~v~~~~~~h~~~-~~~~~~e~~rvLk-pgG~l~~~  134 (257)
T 4hg2_A           95 -------------------LPPASVDVAIAAQAMHWFD-LDRFWAELRRVAR-PGAVFAAV  134 (257)
T ss_dssp             -------------------CCSSCEEEEEECSCCTTCC-HHHHHHHHHHHEE-EEEEEEEE
T ss_pred             -------------------ccCCcccEEEEeeehhHhh-HHHHHHHHHHHcC-CCCEEEEE
Confidence                               1356899999999997765 7788888999997 88876543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.85  E-value=1.5e-08  Score=92.27  Aligned_cols=124  Identities=14%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ++++|||+|||+|.+++.++. ....+|++.|+++.+++.+ ..|+..|.                     + .++++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-~~~~~~~~---------------------~-~~v~~~~  126 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFL-EKLSEALQ---------------------L-ENTTFCH  126 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHH-HHHHHHHT---------------------C-SSEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHcC---------------------C-CCEEEEe
Confidence            678999999999999998885 2345899999999998652 34443321                     1 1467666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.+.                                                            .....+.||+|+
T Consensus       127 ~d~~~~~~------------------------------------------------------------~~~~~~~fD~V~  146 (240)
T 1xdz_A          127 DRAETFGQ------------------------------------------------------------RKDVRESYDIVT  146 (240)
T ss_dssp             SCHHHHTT------------------------------------------------------------CTTTTTCEEEEE
T ss_pred             ccHHHhcc------------------------------------------------------------cccccCCccEEE
Confidence            65432100                                                            000135799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      +..+    ..++.+++.+.++|+ |+|++++.....+   .....++.+.+++.|+
T Consensus       147 ~~~~----~~~~~~l~~~~~~Lk-pgG~l~~~~g~~~---~~~~~~~~~~l~~~g~  194 (240)
T 1xdz_A          147 ARAV----ARLSVLSELCLPLVK-KNGLFVALKAASA---EEELNAGKKAITTLGG  194 (240)
T ss_dssp             EECC----SCHHHHHHHHGGGEE-EEEEEEEEECC-C---HHHHHHHHHHHHHTTE
T ss_pred             Eecc----CCHHHHHHHHHHhcC-CCCEEEEEeCCCc---hHHHHHHHHHHHHcCC
Confidence            8763    567888898988997 8999887632221   2235567778888886

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.85  E-value=3.6e-08  Score=89.13  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..+..++..|. +|+++|+++.+++..     +.                          ++++..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~--------------------------~~~~~~   87 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFC-----EG--------------------------KFNVVK   87 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHH-----HT--------------------------TSEEEC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHH-----Hh--------------------------hcceee
Confidence            3678999999999999988887776 799999999887431     10                          123322


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+                           +                             +     .....+.||+|+
T Consensus        88 ~d~~~---------------------------~-----------------------------~-----~~~~~~~fD~i~  106 (240)
T 3dli_A           88 SDAIE---------------------------Y-----------------------------L-----KSLPDKYLDGVM  106 (240)
T ss_dssp             SCHHH---------------------------H-----------------------------H-----HTSCTTCBSEEE
T ss_pred             ccHHH---------------------------H-----------------------------h-----hhcCCCCeeEEE
Confidence            22111                           0                             0     001357899999


Q ss_pred             EeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEeccc---------ccc----ccchHHHHHHhhhhcCceeeE
Q 018716          276 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN---------YVG----FNNAARHLRSLVDEEGIFGAH  335 (351)
Q Consensus       276 asDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~~---------yfg----v~gg~~~F~~~ve~~G~~~~~  335 (351)
                      +..+++...  .++.+++.+.++|+ |+|++++.....         |..    ..-...++.+.+++.|+-..+
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~  180 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMK-YSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK  180 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBC-TTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcC-CCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence            999999887  67999999999997 899988864211         100    011457888899999974443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.84  E-value=2.6e-08  Score=93.80  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=74.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHH--HcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa--~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|..++.++  .....+|+++|+++.+++.     .+.|....                 .+..++++
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~  174 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDG-----ATRLAAGH-----------------ALAGQITL  174 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHH-----HHHHHTTS-----------------TTGGGEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHH-----HHHHHHhc-----------------CCCCceEE
Confidence            468899999999999998874  3334589999999998854     33343211                 01234666


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.+                                                                ..+.||+
T Consensus       175 ~~~d~~~~~----------------------------------------------------------------~~~~fD~  190 (305)
T 3ocj_A          175 HRQDAWKLD----------------------------------------------------------------TREGYDL  190 (305)
T ss_dssp             EECCGGGCC----------------------------------------------------------------CCSCEEE
T ss_pred             EECchhcCC----------------------------------------------------------------ccCCeEE
Confidence            665543311                                                                1268999


Q ss_pred             EEEeccccCccCHH---HHHHHHHHHcCCCCeEEEEEe
Q 018716          274 ILLTEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       274 ILasDviY~~~~~~---~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      |++..+++......   .+++.+.++|+ |+|++++..
T Consensus       191 v~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  227 (305)
T 3ocj_A          191 LTSNGLNIYEPDDARVTELYRRFWQALK-PGGALVTSF  227 (305)
T ss_dssp             EECCSSGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             EEECChhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEe
Confidence            99999888655444   47888888897 899999875

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.83  E-value=1.4e-07  Score=82.45  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++..  +..+|++.|+++.+++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~   62 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN   62 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            46789999999999999988764  34589999999999864

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.83  E-value=1.5e-08  Score=85.82  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=34.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ++++|||+|||+|..++.++..+.. |++.|+++.+++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~   78 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRL   78 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence            7889999999999999999988774 9999999999854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.82  E-value=8.1e-08  Score=86.67  Aligned_cols=129  Identities=17%  Similarity=0.122  Sum_probs=81.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|..++.++.. | ..+|++.|+++.+++.     +..|...+                    .++.+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~-----~~~~a~~~--------------------~~v~~  130 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD-----LINLAKKR--------------------TNIIP  130 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHH-----HHHHHHHC--------------------TTEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-----HHHHhhcc--------------------CCeEE
Confidence            46889999999999999988864 3 3589999999988754     22232211                    24666


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+...+                                                            ......||+
T Consensus       131 ~~~d~~~~~~~------------------------------------------------------------~~~~~~~D~  150 (233)
T 2ipx_A          131 VIEDARHPHKY------------------------------------------------------------RMLIAMVDV  150 (233)
T ss_dssp             ECSCTTCGGGG------------------------------------------------------------GGGCCCEEE
T ss_pred             EEcccCChhhh------------------------------------------------------------cccCCcEEE
Confidence            65554331100                                                            012457999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHH-H---HHhhhhcCce
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH-L---RSLVDEEGIF  332 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~-F---~~~ve~~G~~  332 (351)
                      |++ |.. .+.....+++-+.++|+ |+|++++..+............ |   ++.+++.|+-
T Consensus       151 V~~-~~~-~~~~~~~~~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  210 (233)
T 2ipx_A          151 IFA-DVA-QPDQTRIVALNAHTFLR-NGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMK  210 (233)
T ss_dssp             EEE-CCC-CTTHHHHHHHHHHHHEE-EEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEE
T ss_pred             EEE-cCC-CccHHHHHHHHHHHHcC-CCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCc
Confidence            997 555 45555666777888897 8999999765421111111111 2   6777888863

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.81  E-value=5.2e-08  Score=91.01  Aligned_cols=106  Identities=18%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C--CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  192 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G--a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~  192 (351)
                      -+|.+|||||||+|..++.++.. +  ..+|++.|+++.|++..     +.|+...                 ....+|+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A-----~~~~~~~-----------------~~~~~v~  126 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC-----RRHIDAY-----------------KAPTPVD  126 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHH-----HHHHHTS-----------------CCSSCEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH-----HHHHHhh-----------------ccCceEE
Confidence            47889999999999999888763 1  23899999999998652     3333211                 0123566


Q ss_pred             eeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCcc
Q 018716          193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  272 (351)
Q Consensus       193 ~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~D  272 (351)
                      +..+|..+.                                                                 ....||
T Consensus       127 ~~~~D~~~~-----------------------------------------------------------------~~~~~d  141 (261)
T 4gek_A          127 VIEGDIRDI-----------------------------------------------------------------AIENAS  141 (261)
T ss_dssp             EEESCTTTC-----------------------------------------------------------------CCCSEE
T ss_pred             Eeecccccc-----------------------------------------------------------------cccccc
Confidence            665543221                                                                 124589


Q ss_pred             EEEEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEec
Q 018716          273 VILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATK  309 (351)
Q Consensus       273 lILasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K  309 (351)
                      +|++.-++.....  ...+++-|.+.|+ |+|+++++-+
T Consensus       142 ~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~  179 (261)
T 4gek_A          142 MVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK  179 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             cceeeeeeeecCchhHhHHHHHHHHHcC-CCcEEEEEec
Confidence            9999999876543  3567888889997 9999988743

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.81  E-value=4.8e-08  Score=87.61  Aligned_cols=135  Identities=14%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|++.|+++.+++. .+.|+..+.                     +..+|++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~---------------------~~~~v~~  114 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI-TQQMLNFAG---------------------LQDKVTI  114 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH-HHHHHHHHT---------------------CGGGEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHH-HHHHHHHcC---------------------CCCceEE
Confidence            36789999999999999998863 2 3589999999999864 234444331                     2235777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +..                    +                                  ........||+
T Consensus       115 ~~~d~~~~---l~~--------------------~----------------------------------~~~~~~~~fD~  137 (221)
T 3u81_A          115 LNGASQDL---IPQ--------------------L----------------------------------KKKYDVDTLDM  137 (221)
T ss_dssp             EESCHHHH---GGG--------------------T----------------------------------TTTSCCCCCSE
T ss_pred             EECCHHHH---HHH--------------------H----------------------------------HHhcCCCceEE
Confidence            77765331   000                    0                                  00012368999


Q ss_pred             EEEeccccCccCHHHHHHHHH--HHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEee
Q 018716          274 ILLTEIPYSVTSLKKLYLLIK--KCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~--~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                      |+..-..   ..+....+.+.  ++|+ |+|++++..-.     ..+...|.+++++...|....+.
T Consensus       138 V~~d~~~---~~~~~~~~~~~~~~~Lk-pgG~lv~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~  195 (221)
T 3u81_A          138 VFLDHWK---DRYLPDTLLLEKCGLLR-KGTVLLADNVI-----VPGTPDFLAYVRGSSSFECTHYS  195 (221)
T ss_dssp             EEECSCG---GGHHHHHHHHHHTTCCC-TTCEEEESCCC-----CCCCHHHHHHHHHCTTEEEEEEE
T ss_pred             EEEcCCc---ccchHHHHHHHhccccC-CCeEEEEeCCC-----CcchHHHHHHHhhCCCceEEEcc
Confidence            9875322   33444334443  6776 89988775322     12568999999988777777664

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.81  E-value=2.1e-08  Score=97.04  Aligned_cols=39  Identities=31%  Similarity=0.561  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      ..++++|||+|||+|..++.++..|+.+|++.|.++ +++
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~   86 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ   86 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHH
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHH
Confidence            358899999999999999999988888999999996 664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.81  E-value=1.1e-07  Score=85.11  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ++++|||+|||+|..++.++..  .+|+++|+++.+++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~   69 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEI   69 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHH
Confidence            4689999999999999888766  589999999999854

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.80  E-value=1.6e-07  Score=79.98  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=80.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++.. +..+|+++|+++.+++.     .+.|...+                 .+..++ ++
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~~-~~   80 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRER-----ILSNAINL-----------------GVSDRI-AV   80 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHH-----HHHHHHTT-----------------TCTTSE-EE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHH-----HHHHHHHh-----------------CCCCCE-EE
Confidence            46789999999999999988864 34689999999998854     23333211                 012234 44


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.                                                        +    +  .....||+|
T Consensus        81 ~~d~~~~--------------------------------------------------------~----~--~~~~~~D~i   98 (178)
T 3hm2_A           81 QQGAPRA--------------------------------------------------------F----D--DVPDNPDVI   98 (178)
T ss_dssp             ECCTTGG--------------------------------------------------------G----G--GCCSCCSEE
T ss_pred             ecchHhh--------------------------------------------------------h----h--ccCCCCCEE
Confidence            4332110                                                        0    0  012689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      +....++.    ..+++.+.++|+ |+|++++..-..     .....+.+.+++.|.
T Consensus        99 ~~~~~~~~----~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~~~  145 (178)
T 3hm2_A           99 FIGGGLTA----PGVFAAAWKRLP-VGGRLVANAVTV-----ESEQMLWALRKQFGG  145 (178)
T ss_dssp             EECC-TTC----TTHHHHHHHTCC-TTCEEEEEECSH-----HHHHHHHHHHHHHCC
T ss_pred             EECCcccH----HHHHHHHHHhcC-CCCEEEEEeecc-----ccHHHHHHHHHHcCC
Confidence            99998887    566777777887 899998875332     245677777777764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.80  E-value=1.3e-08  Score=94.40  Aligned_cols=112  Identities=19%  Similarity=0.293  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..++.++..|+ +|+++|+++.+++..     +.|........              ...++.+..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~~~~~~~--------------~~~~~~~~~  115 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYA-----LKERWNRRKEP--------------AFDKWVIEE  115 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHHHHTTTSH--------------HHHTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH-----HHhhhhccccc--------------ccceeeEee
Confidence            3678999999999999999988877 999999999998652     33322110000              001234444


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+...+.                                                     .|       ...+.||+|+
T Consensus       116 ~d~~~~~~-----------------------------------------------------~~-------~~~~~fD~V~  135 (293)
T 3thr_A          116 ANWLTLDK-----------------------------------------------------DV-------PAGDGFDAVI  135 (293)
T ss_dssp             CCGGGHHH-----------------------------------------------------HS-------CCTTCEEEEE
T ss_pred             cChhhCcc-----------------------------------------------------cc-------ccCCCeEEEE
Confidence            44332110                                                     01       1356899999


Q ss_pred             Ee-ccccCccC-------HHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LT-EIPYSVTS-------LKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 as-DviY~~~~-------~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +. .++.+...       ...+++-+.++|+ |+|++++..
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  175 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDH  175 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence            98 89988777       8899999999997 899998764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.80  E-value=3.6e-08  Score=91.43  Aligned_cols=131  Identities=13%  Similarity=0.169  Sum_probs=84.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++... ..+|++.|+++.+++. ...|+..+.. +                 .+..+++++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~-a~~n~~~~~~-~-----------------~l~~~v~~~   95 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEF-ARRSLELPDN-A-----------------AFSARIEVL   95 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHH-HHHHTTSGGG-T-----------------TTGGGEEEE
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHhhhh-C-----------------CCcceEEEE
Confidence            367899999999999999988654 4589999999999865 2344433000 1                 122357777


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.+...  .                                                   +.   ........||+|
T Consensus        96 ~~D~~~~~~--~---------------------------------------------------~~---~~~~~~~~fD~V  119 (260)
T 2ozv_A           96 EADVTLRAK--A---------------------------------------------------RV---EAGLPDEHFHHV  119 (260)
T ss_dssp             ECCTTCCHH--H---------------------------------------------------HH---HTTCCTTCEEEE
T ss_pred             eCCHHHHhh--h---------------------------------------------------hh---hhccCCCCcCEE
Confidence            777655310  0                                                   00   000124578888


Q ss_pred             EEeccccCcc-------------------CHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhc
Q 018716          275 LLTEIPYSVT-------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE  329 (351)
Q Consensus       275 LasDviY~~~-------------------~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~  329 (351)
                      ++. -.|...                   .++.+++.+.++|+ |+|++++.....      ...++.+.+++.
T Consensus       120 v~n-PPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~------~~~~~~~~l~~~  185 (260)
T 2ozv_A          120 IMN-PPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLISRPQ------SVAEIIAACGSR  185 (260)
T ss_dssp             EEC-CCC---------------------CCHHHHHHHHHHHEE-EEEEEEEEECGG------GHHHHHHHHTTT
T ss_pred             EEC-CCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEEEcHH------HHHHHHHHHHhc
Confidence            875 334332                   37788888889997 899999876443      346788888764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.79  E-value=2e-08  Score=93.04  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=86.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ..+.+|||+|||+|.+++.++.. +..+|++.|+++.+++. ...|+..|.                     +. +|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~---------------------l~-~v~~~  135 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAF-VERAIEVLG---------------------LK-GARAL  135 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHH-HHHHHHHHT---------------------CS-SEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------CC-ceEEE
Confidence            36789999999999999998864 45689999999999864 334444331                     11 37776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+++.+.                                                            .......||+|
T Consensus       136 ~~d~~~~~~------------------------------------------------------------~~~~~~~fD~I  155 (249)
T 3g89_A          136 WGRAEVLAR------------------------------------------------------------EAGHREAYARA  155 (249)
T ss_dssp             ECCHHHHTT------------------------------------------------------------STTTTTCEEEE
T ss_pred             ECcHHHhhc------------------------------------------------------------ccccCCCceEE
Confidence            665533110                                                            00123689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH  335 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~  335 (351)
                      ++.-+    ..++.+++.+.++|+ |+|++++......   ..-..++.+.+++.|+...+
T Consensus       156 ~s~a~----~~~~~ll~~~~~~Lk-pgG~l~~~~g~~~---~~e~~~~~~~l~~~G~~~~~  208 (249)
T 3g89_A          156 VARAV----APLCVLSELLLPFLE-VGGAAVAMKGPRV---EEELAPLPPALERLGGRLGE  208 (249)
T ss_dssp             EEESS----CCHHHHHHHHGGGEE-EEEEEEEEECSCC---HHHHTTHHHHHHHHTEEEEE
T ss_pred             EECCc----CCHHHHHHHHHHHcC-CCeEEEEEeCCCc---HHHHHHHHHHHHHcCCeEEE
Confidence            98643    457889998989997 8898775432211   22455677777788864333

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.79  E-value=6.7e-09  Score=94.02  Aligned_cols=56  Identities=18%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             ccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           93 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        93 k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..|+..  +.+.+.+..     ..++.+|||+|||+|..++.++..+..+|+++|+++.|++.
T Consensus        43 ~~~~~~--~~~~l~~~~-----~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~   98 (236)
T 1zx0_A           43 ERWETP--YMHALAAAA-----SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR   98 (236)
T ss_dssp             EGGGHH--HHHHHHHHH-----TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHH
T ss_pred             HHHHHH--HHHHHHhhc-----CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHH
Confidence            467764  333333331     13678999999999999998887666689999999999864

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.79  E-value=2.7e-08  Score=87.72  Aligned_cols=97  Identities=21%  Similarity=0.211  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..+..+   +..+|+++|+++.+++..     +.|.                       +++++..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a-----~~~~-----------------------~~~~~~~~   84 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVG-----RRRA-----------------------PEATWVRA   84 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHH-----HHHC-----------------------TTSEEECC
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHH-----HHhC-----------------------CCcEEEEc
Confidence            7889999999999887765   555899999999987532     1111                       12444444


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+.+                                                               ...+.||+|++
T Consensus        85 d~~~~~---------------------------------------------------------------~~~~~fD~v~~  101 (211)
T 2gs9_A           85 WGEALP---------------------------------------------------------------FPGESFDVVLL  101 (211)
T ss_dssp             CTTSCC---------------------------------------------------------------SCSSCEEEEEE
T ss_pred             ccccCC---------------------------------------------------------------CCCCcEEEEEE
Confidence            332210                                                               12467999999


Q ss_pred             eccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          277 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       277 sDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      ..+++..+....+++.+.++|+ |+|++++..
T Consensus       102 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~  132 (211)
T 2gs9_A          102 FTTLEFVEDVERVLLEARRVLR-PGGALVVGV  132 (211)
T ss_dssp             ESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cChhhhcCCHHHHHHHHHHHcC-CCCEEEEEe
Confidence            9999999999999999999997 899998874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.79  E-value=1.8e-07  Score=85.86  Aligned_cols=135  Identities=16%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|++.|+++.+++.     .+.|+..+                 .+..+|++
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-----------------g~~~~v~~  119 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQV-----ARENLQLA-----------------GVDQRVTL  119 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEE
Confidence            36789999999999999988864 2 4589999999999854     33343321                 12346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +.                                                         .....+.||+
T Consensus       120 ~~~d~~~~---l~---------------------------------------------------------~~~~~~~fD~  139 (248)
T 3tfw_A          120 REGPALQS---LE---------------------------------------------------------SLGECPAFDL  139 (248)
T ss_dssp             EESCHHHH---HH---------------------------------------------------------TCCSCCCCSE
T ss_pred             EEcCHHHH---HH---------------------------------------------------------hcCCCCCeEE
Confidence            76654321   00                                                         0012358999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc----------ccchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg----------v~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+. |.  ....++.+++.+.++|+ |+|++++..--. .|          ...++++|.+.+.+..-|...++
T Consensus       140 V~~-d~--~~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~-~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (248)
T 3tfw_A          140 IFI-DA--DKPNNPHYLRWALRYSR-PGTLIIGDNVVR-DGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL  208 (248)
T ss_dssp             EEE-CS--CGGGHHHHHHHHHHTCC-TTCEEEEECCSG-GGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEE-CC--chHHHHHHHHHHHHhcC-CCeEEEEeCCCc-CCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence            987 33  45667788888888897 899887753211 11          01257889999888766776665

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.78  E-value=2.1e-08  Score=98.78  Aligned_cols=48  Identities=25%  Similarity=0.198  Sum_probs=40.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++++|||+|||+|..++.++..|+++|++.|+++.+++. .+.|+.+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~-A~~N~~~n  258 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRAL-SLAHFEAN  258 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHH-HHHHHHHT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            4688999999999999999998788899999999999965 34555544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.77  E-value=1.9e-08  Score=90.64  Aligned_cols=116  Identities=18%  Similarity=0.152  Sum_probs=80.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||+|||+|..++.++..|. +|+++|+++.+++..     +.|   .                    +++++..
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~---~--------------------~~~~~~~   97 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLA-----RAN---A--------------------PHADVYE   97 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHH---C--------------------TTSEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHh---C--------------------CCceEEE
Confidence            4678999999999999999988765 899999999988542     222   0                    2467777


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccC-CCCccEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQG-EGGYDVI  274 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~-~~~~DlI  274 (351)
                      +|+.+.-                                                              ... .+.||+|
T Consensus        98 ~d~~~~~--------------------------------------------------------------~~~~~~~fD~v  115 (226)
T 3m33_A           98 WNGKGEL--------------------------------------------------------------PAGLGAPFGLI  115 (226)
T ss_dssp             CCSCSSC--------------------------------------------------------------CTTCCCCEEEE
T ss_pred             cchhhcc--------------------------------------------------------------CCcCCCCEEEE
Confidence            7764210                                                              011 4689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH  335 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~  335 (351)
                      ++.      .....+++-+.++|+ |+|+++....      ......+.+.+++.|+-..+
T Consensus       116 ~~~------~~~~~~l~~~~~~Lk-pgG~l~~~~~------~~~~~~~~~~l~~~Gf~~~~  163 (226)
T 3m33_A          116 VSR------RGPTSVILRLPELAA-PDAHFLYVGP------RLNVPEVPERLAAVGWDIVA  163 (226)
T ss_dssp             EEE------SCCSGGGGGHHHHEE-EEEEEEEEES------SSCCTHHHHHHHHTTCEEEE
T ss_pred             EeC------CCHHHHHHHHHHHcC-CCcEEEEeCC------cCCHHHHHHHHHHCCCeEEE
Confidence            998      234455666777887 8998882221      12456788888888874444

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.77  E-value=6.8e-08  Score=87.44  Aligned_cols=39  Identities=36%  Similarity=0.553  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~   78 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRV   78 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            4678999999999999999888776 89999999999854

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.76  E-value=9e-08  Score=87.96  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=80.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  179 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~  179 (351)
                      .+++.+....    ...++.+|||+|||+|..++.++..+. +|+++|+++.+++...                      
T Consensus        21 ~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~----------------------   73 (261)
T 3ege_A           21 RIVNAIINLL----NLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAV----------------------   73 (261)
T ss_dssp             HHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSC----------------------
T ss_pred             HHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHH----------------------
Confidence            4666666653    124788999999999999999887664 8999999998874310                      


Q ss_pred             CCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 018716          180 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  259 (351)
Q Consensus       180 ~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~  259 (351)
                             -..+++|..+|+...+                                                         
T Consensus        74 -------~~~~~~~~~~d~~~~~---------------------------------------------------------   89 (261)
T 3ege_A           74 -------VHPQVEWFTGYAENLA---------------------------------------------------------   89 (261)
T ss_dssp             -------CCTTEEEECCCTTSCC---------------------------------------------------------
T ss_pred             -------hccCCEEEECchhhCC---------------------------------------------------------
Confidence                   0114666655553311                                                         


Q ss_pred             hccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          260 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       260 ~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                            ...+.||+|++..++++....+.+++-+.++|+  +|.+++.
T Consensus        90 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~  129 (261)
T 3ege_A           90 ------LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLL  129 (261)
T ss_dssp             ------SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEE
T ss_pred             ------CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEE
Confidence                  124689999999999999999999999999996  7755544

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.76  E-value=4.1e-08  Score=88.68  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=78.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..+. +|+++|+++.+++..     +.|..                     ..++++..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a-----~~~~~---------------------~~~~~~~~  107 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIA-----AKENT---------------------AANISYRL  107 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHH-----HHHSC---------------------CTTEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHH-----HHhCc---------------------ccCceEEE
Confidence            4678999999999999999988776 899999999988542     22210                     12577777


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.+...                     .|                                     .....||+|+
T Consensus       108 ~d~~~~~~~~---------------------~~-------------------------------------~~~~~~d~v~  129 (245)
T 3ggd_A          108 LDGLVPEQAA---------------------QI-------------------------------------HSEIGDANIY  129 (245)
T ss_dssp             CCTTCHHHHH---------------------HH-------------------------------------HHHHCSCEEE
T ss_pred             Cccccccccc---------------------cc-------------------------------------ccccCccEEE
Confidence            7665532100                     00                                     0123589999


Q ss_pred             EeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +..+++...  ....+++.+.++|+ |+|++++..
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  163 (245)
T 3ggd_A          130 MRTGFHHIPVEKRELLGQSLRILLG-KQGAMYLIE  163 (245)
T ss_dssp             EESSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred             EcchhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence            999999888  78899999999997 899877763

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.76  E-value=6.2e-08  Score=95.27  Aligned_cols=49  Identities=27%  Similarity=0.365  Sum_probs=39.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      ..+.+|||+|||+|..++.++..+ ..+|+++|+++.+++. .+.|+..|.
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~-Ar~n~~~ng  270 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-SRLNVETNM  270 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHH-HHHHHHHHC
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHH-HHHHHHHcC
Confidence            356899999999999999998764 4689999999999865 355665553

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.76  E-value=1.9e-07  Score=88.24  Aligned_cols=133  Identities=21%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++.. ...+++++|++ .+++.     .+.|....                 .+..++++.
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~-----a~~~~~~~-----------------~~~~~v~~~  220 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEV-----AKENARIQ-----------------GVASRYHTI  220 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHH-----HHHHHHHH-----------------TCGGGEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHH-----HHHHHHhc-----------------CCCcceEEE
Confidence            35689999999999999888764 23489999999 88854     23333221                 022357776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                                ...+||+|
T Consensus       221 ~~d~~~~~----------------------------------------------------------------~~~~~D~v  236 (335)
T 2r3s_A          221 AGSAFEVD----------------------------------------------------------------YGNDYDLV  236 (335)
T ss_dssp             ESCTTTSC----------------------------------------------------------------CCSCEEEE
T ss_pred             ecccccCC----------------------------------------------------------------CCCCCcEE
Confidence            66543310                                                                12249999


Q ss_pred             EEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEecccc---------------------ccccchHHHHHHhhhhcCc
Q 018716          275 LLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNY---------------------VGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       275 LasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~y---------------------fgv~gg~~~F~~~ve~~G~  331 (351)
                      ++..++++-  +....+++-+.++|+ |+|.+++..-...                     .+..-+..++.+.+++.|+
T Consensus       237 ~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf  315 (335)
T 2r3s_A          237 LLPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGF  315 (335)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTC
T ss_pred             EEcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCC
Confidence            999999876  455788888888997 8998887632110                     1122257889999999997


Q ss_pred             eeeEE
Q 018716          332 FGAHL  336 (351)
Q Consensus       332 ~~~~~  336 (351)
                      -..++
T Consensus       316 ~~~~~  320 (335)
T 2r3s_A          316 SHSQL  320 (335)
T ss_dssp             SEEEE
T ss_pred             CeeeE
Confidence            44443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.76  E-value=2e-07  Score=83.16  Aligned_cols=138  Identities=19%  Similarity=0.188  Sum_probs=88.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|....                 .+..++++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~  114 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADI-----ARSNIERA-----------------NLNDRVEV  114 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEE
Confidence            36789999999999999988864 2 3489999999998854     33444321                 12335777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +.                                                  .+.     ......||+
T Consensus       115 ~~~d~~~~---~~--------------------------------------------------~~~-----~~~~~~fD~  136 (223)
T 3duw_A          115 RTGLALDS---LQ--------------------------------------------------QIE-----NEKYEPFDF  136 (223)
T ss_dssp             EESCHHHH---HH--------------------------------------------------HHH-----HTTCCCCSE
T ss_pred             EEcCHHHH---HH--------------------------------------------------HHH-----hcCCCCcCE
Confidence            76654321   00                                                  000     011257999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc----------ccchHHHHHHhhhhcCceeeEEee
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg----------v~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                      |+..-   ....++.+++.+.++|+ |+|++++-.--. .|          .....++|.+.+.++.-+...++.
T Consensus       137 v~~d~---~~~~~~~~l~~~~~~L~-pgG~lv~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  206 (223)
T 3duw_A          137 IFIDA---DKQNNPAYFEWALKLSR-PGTVIIGDNVVR-EGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQ  206 (223)
T ss_dssp             EEECS---CGGGHHHHHHHHHHTCC-TTCEEEEESCSG-GGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             EEEcC---CcHHHHHHHHHHHHhcC-CCcEEEEeCCCc-CCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEe
Confidence            98642   25567888888888997 899777642211 11          012468899999888767776654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.76  E-value=3.3e-08  Score=97.27  Aligned_cols=48  Identities=29%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++++|||+|||+|..++.++..|+.+|++.|+++.+++. ...|+.+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~-a~~n~~~n  266 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-ARQNVELN  266 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            3688999999999999999998888899999999999865 34555544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.75  E-value=7.6e-08  Score=84.94  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..| .+|+++|+++.+++..     +.|                      .   .++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~-----~~~----------------------~---~~~~~   79 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQA-----KEK----------------------L---DHVVL   79 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHH-----HTT----------------------S---SEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHH-----HHh----------------------C---CcEEE
Confidence            467899999999999999888776 5999999999887431     100                      0   12333


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|.....                                                             .....+.||+|+
T Consensus        80 ~d~~~~~-------------------------------------------------------------~~~~~~~fD~v~   98 (230)
T 3cc8_A           80 GDIETMD-------------------------------------------------------------MPYEEEQFDCVI   98 (230)
T ss_dssp             SCTTTCC-------------------------------------------------------------CCSCTTCEEEEE
T ss_pred             cchhhcC-------------------------------------------------------------CCCCCCccCEEE
Confidence            3322100                                                             001246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc---------------cc--c-------ccchHHHHHHhhhhcCc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN---------------YV--G-------FNNAARHLRSLVDEEGI  331 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~---------------yf--g-------v~gg~~~F~~~ve~~G~  331 (351)
                      +.+++++......+++.+.++|+ |+|.+++.....               +.  +       ..-...++.+.+++.|+
T Consensus        99 ~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  177 (230)
T 3cc8_A           99 FGDVLEHLFDPWAVIEKVKPYIK-QNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY  177 (230)
T ss_dssp             EESCGGGSSCHHHHHHHTGGGEE-EEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred             ECChhhhcCCHHHHHHHHHHHcC-CCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence            99999998888899999999997 899999874211               00  0       00156788899999996


Q ss_pred             eee
Q 018716          332 FGA  334 (351)
Q Consensus       332 ~~~  334 (351)
                      -..
T Consensus       178 ~~~  180 (230)
T 3cc8_A          178 SIS  180 (230)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            333

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.75  E-value=1.5e-08  Score=92.62  Aligned_cols=57  Identities=18%  Similarity=0.272  Sum_probs=42.2

Q ss_pred             cccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           92 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        92 ~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      +..|+..  +-+.+.+..     ..+|.||||+|||+|.....++..+..+|++.|++++|++.
T Consensus        42 m~~we~~--~m~~~a~~~-----~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~   98 (236)
T 3orh_A           42 MERWETP--YMHALAAAA-----SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR   98 (236)
T ss_dssp             EEGGGHH--HHHHHHHHH-----TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHH
T ss_pred             HHHHHHH--HHHHHHHhh-----ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHH
Confidence            3468864  223333321     24789999999999999988887655689999999999854

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.75  E-value=1.4e-07  Score=85.87  Aligned_cols=125  Identities=19%  Similarity=0.185  Sum_probs=84.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|++.|+++++++. ...|+..+.                     +..++++
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~-a~~~~~~~~---------------------~~~~v~~  149 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKL-AWENIKWAG---------------------FDDRVTI  149 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH-HHHHHHHHT---------------------CTTTEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHH-HHHHHHHcC---------------------CCCceEE
Confidence            57889999999999999988865 4 4699999999999864 234443321                     1224666


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.                                                                .....||+
T Consensus       150 ~~~d~~~~----------------------------------------------------------------~~~~~~D~  165 (255)
T 3mb5_A          150 KLKDIYEG----------------------------------------------------------------IEEENVDH  165 (255)
T ss_dssp             ECSCGGGC----------------------------------------------------------------CCCCSEEE
T ss_pred             EECchhhc----------------------------------------------------------------cCCCCcCE
Confidence            55544320                                                                12356999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcC--ceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG--IFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G--~~~~~~v  337 (351)
                      |+. |    ......+++.+.++|+ |+|++++.....     ....++.+.+++.|  +-..+++
T Consensus       166 v~~-~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          166 VIL-D----LPQPERVVEHAAKALK-PGGFFVAYTPCS-----NQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             EEE-C----SSCGGGGHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             EEE-C----CCCHHHHHHHHHHHcC-CCCEEEEEECCH-----HHHHHHHHHHHHcCCCccccEEE
Confidence            987 3    3344556677777887 899988765322     24677888888888  6455443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.75  E-value=5e-08  Score=91.80  Aligned_cols=39  Identities=21%  Similarity=0.106  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||||||+|..++.++..|+ +|+++|+|+.|++.
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~   82 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDD   82 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence            5788999999999999999998876 89999999999854

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.75  E-value=4.6e-09  Score=94.94  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..| .+|+++|+++.+++.
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~  115 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIAL  115 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHH
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHH
Confidence            378999999999999999999887 599999999999865

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.75  E-value=3.5e-07  Score=83.83  Aligned_cols=108  Identities=20%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChH------HHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCC
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAE------TIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTL  187 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~------vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l  187 (351)
                      .++++|||+|||+|..++.++.. |. .+|+++|+++.      +++.     .+.|...+                 .+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~-----a~~~~~~~-----------------~~   99 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ-----AWNHLLAG-----------------PL   99 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHH-----HHHHHHTS-----------------TT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHH-----HHHHHHhc-----------------CC
Confidence            47889999999999999988865 43 58999999987      6643     23333211                 01


Q ss_pred             CCceeeeecc-CCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhcccccc
Q 018716          188 APSVHFYAGD-WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQ  266 (351)
Q Consensus       188 ~~~v~~~~gd-W~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~  266 (351)
                      ..++++..+| +....                                                 +            ..
T Consensus       100 ~~~v~~~~~d~~~~~~-------------------------------------------------~------------~~  118 (275)
T 3bkx_A          100 GDRLTVHFNTNLSDDL-------------------------------------------------G------------PI  118 (275)
T ss_dssp             GGGEEEECSCCTTTCC-------------------------------------------------G------------GG
T ss_pred             CCceEEEECChhhhcc-------------------------------------------------C------------CC
Confidence            2356666655 11100                                                 0            01


Q ss_pred             CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ..+.||+|++..+++.......+.+.++.+++ |+|.+++.
T Consensus       119 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-~gG~l~~~  158 (275)
T 3bkx_A          119 ADQHFDRVVLAHSLWYFASANALALLFKNMAA-VCDHVDVA  158 (275)
T ss_dssp             TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-TCSEEEEE
T ss_pred             CCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-CCCEEEEE
Confidence            34689999999999999888888888888764 89998886

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.74  E-value=2.7e-08  Score=90.14  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..+..++.. ...+|+++|+++.+++..     +.|.                       +++++.
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a-----~~~~-----------------------~~~~~~   83 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA-----ADRL-----------------------PNTNFG   83 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHH-----HHHS-----------------------TTSEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhC-----------------------CCcEEE
Confidence            46789999999999999888764 234899999999988542     1110                       135555


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|....                                                                .....||+|
T Consensus        84 ~~d~~~~----------------------------------------------------------------~~~~~fD~v   99 (259)
T 2p35_A           84 KADLATW----------------------------------------------------------------KPAQKADLL   99 (259)
T ss_dssp             ECCTTTC----------------------------------------------------------------CCSSCEEEE
T ss_pred             ECChhhc----------------------------------------------------------------CccCCcCEE
Confidence            5543321                                                                024579999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      ++..+++.......+++.+.++|+ |+|++++..
T Consensus       100 ~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  132 (259)
T 2p35_A          100 YANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQM  132 (259)
T ss_dssp             EEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             EEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEe
Confidence            999999999889999999999997 899998864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.74  E-value=1.9e-07  Score=86.61  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|..++.++.. + ..+|++.|+++.+++.     .+.|...+.                 +..++++
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~~~~v~~  168 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL-----AESNLTKWG-----------------LIERVTI  168 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH-----HHHHHHHTT-----------------CGGGEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCCEEE
Confidence            56889999999999999988865 4 4699999999999864     233433210                 1124555


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.                                                                .....||+
T Consensus       169 ~~~d~~~~----------------------------------------------------------------~~~~~~D~  184 (277)
T 1o54_A          169 KVRDISEG----------------------------------------------------------------FDEKDVDA  184 (277)
T ss_dssp             ECCCGGGC----------------------------------------------------------------CSCCSEEE
T ss_pred             EECCHHHc----------------------------------------------------------------ccCCccCE
Confidence            44433210                                                                12357999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEeee
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKE  339 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e  339 (351)
                      |+. |.    .....+++.+.++|+ |+|++++.....     ....++.+.+++.|+...+..+.
T Consensus       185 V~~-~~----~~~~~~l~~~~~~L~-pgG~l~~~~~~~-----~~~~~~~~~l~~~gf~~~~~~~~  239 (277)
T 1o54_A          185 LFL-DV----PDPWNYIDKCWEALK-GGGRFATVCPTT-----NQVQETLKKLQELPFIRIEVWES  239 (277)
T ss_dssp             EEE-CC----SCGGGTHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHSSEEEEEEECC
T ss_pred             EEE-CC----cCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCceeEEEEE
Confidence            997 33    333456666777887 899988876432     24567788888888755555443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.74  E-value=4.1e-08  Score=85.93  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.++|...+      .++.+|||+|||+|..++.++..|..+|+++|+++.+++.
T Consensus        31 ~~~~~l~~~~------~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~   80 (215)
T 2pxx_A           31 SFRALLEPEL------RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA   80 (215)
T ss_dssp             HHHHHHGGGC------CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred             HHHHHHHHhc------CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHH
Confidence            4666665542      4678999999999999999888776689999999998854

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=5.1e-08  Score=90.18  Aligned_cols=99  Identities=22%  Similarity=0.233  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..+..++..+. +|+++|+++.|++..     +.+.                       +++++..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~  106 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKA-----RQNY-----------------------PHLHFDV  106 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHC-----------------------TTSCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCEEEE
Confidence            4678999999999999998887654 899999999988542     1111                       1344544


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|....+                                                                ..+.||+|+
T Consensus       107 ~d~~~~~----------------------------------------------------------------~~~~fD~v~  122 (279)
T 3ccf_A          107 ADARNFR----------------------------------------------------------------VDKPLDAVF  122 (279)
T ss_dssp             CCTTTCC----------------------------------------------------------------CSSCEEEEE
T ss_pred             CChhhCC----------------------------------------------------------------cCCCcCEEE
Confidence            4433210                                                                135799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +..+++.....+.+++-+.++|+ |+|.+++..
T Consensus       123 ~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~  154 (279)
T 3ccf_A          123 SNAMLHWVKEPEAAIASIHQALK-SGGRFVAEF  154 (279)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EcchhhhCcCHHHHHHHHHHhcC-CCcEEEEEe
Confidence            99999998888999999999997 899988863

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.73  E-value=5.5e-08  Score=94.11  Aligned_cols=46  Identities=28%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++++|||+|||+|..++.++..|+ +|++.|+|+.+++. .+.|+.+|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~-a~~n~~~~  198 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW-AKENQVLA  198 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH-HHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHH-HHHHHHHc
Confidence            578999999999999999998888 99999999999965 35566555

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.72  E-value=1.4e-07  Score=88.35  Aligned_cols=38  Identities=26%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||||||+|..++.++..|. +|+++|+++.+++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~  119 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAA  119 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHH
Confidence            455999999999999999988775 79999999999854

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.72  E-value=1e-07  Score=88.57  Aligned_cols=126  Identities=14%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|..++.++..  ...+|++.|+++.+++.     .+.|...+.   .              ..++++
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~---g--------------~~~v~~  166 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK-----AMDNLSEFY---D--------------IGNVRT  166 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHH-----HHHHHHTTS---C--------------CTTEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHH-----HHHHHHhcC---C--------------CCcEEE
Confidence            46789999999999999988864  24589999999998854     344443110   0              124555


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.                                                                .....||+
T Consensus       167 ~~~d~~~~----------------------------------------------------------------~~~~~fD~  182 (275)
T 1yb2_A          167 SRSDIADF----------------------------------------------------------------ISDQMYDA  182 (275)
T ss_dssp             ECSCTTTC----------------------------------------------------------------CCSCCEEE
T ss_pred             EECchhcc----------------------------------------------------------------CcCCCccE
Confidence            55544320                                                                12357999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEee
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                      |++ +    ......+++.+.++|+ |+|++++.....     ....++.+.+++.|+...+..+
T Consensus       183 Vi~-~----~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~-----~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          183 VIA-D----IPDPWNHVQKIASMMK-PGSVATFYLPNF-----DQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             EEE-C----CSCGGGSHHHHHHTEE-EEEEEEEEESSH-----HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             EEE-c----CcCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCeEEEEEE
Confidence            998 3    3344567777788887 899999886432     2467788889888975555444

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.71  E-value=1.2e-07  Score=90.17  Aligned_cols=49  Identities=18%  Similarity=0.175  Sum_probs=42.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      -+|++|||+|||+|..++.++..|+.+|++.|+|+..++. +..|+++|.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~-~~~N~~~N~  172 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLNK  172 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHTT
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHH-HHHHHHHcC
Confidence            4689999999999999999999888899999999999865 456666663

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.71  E-value=6.1e-08  Score=90.27  Aligned_cols=67  Identities=15%  Similarity=0.102  Sum_probs=47.2

Q ss_pred             CCCccEEEEeccccC----ccCHHHHHHHHHHHcCCCCeEEEEEe--ccccccc--------cchHHHHHHhhhhcCcee
Q 018716          268 EGGYDVILLTEIPYS----VTSLKKLYLLIKKCLRPPYGVVYLAT--KKNYVGF--------NNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       268 ~~~~DlILasDviY~----~~~~~~L~~~l~~~L~~p~gv~ylA~--K~~yfgv--------~gg~~~F~~~ve~~G~~~  333 (351)
                      .+.||+|++..+++.    ......+++-+.++|+ |+|++++..  ...++..        .-...++.+.+++.|+-.
T Consensus       172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~  250 (289)
T 2g72_A          172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV  250 (289)
T ss_dssp             CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence            467999999999987    5567788888888897 899988862  1111101        115678889999999633


Q ss_pred             eE
Q 018716          334 AH  335 (351)
Q Consensus       334 ~~  335 (351)
                      .+
T Consensus       251 ~~  252 (289)
T 2g72_A          251 RD  252 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.71  E-value=1.7e-07  Score=83.60  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~   77 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTH   77 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHH
Confidence            4678999999999999998887665 89999999998854

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.71  E-value=2.3e-07  Score=84.08  Aligned_cols=126  Identities=21%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++.+|||+|||+|..++.++.. + ..+|++.|+++.+++.. ..|+..|.   .                  ..++++
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a-~~~~~~~~---g------------------~~~v~~  152 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA-ERNVRAFW---Q------------------VENVRF  152 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHHHHC---C------------------CCCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHhc---C------------------CCCEEE
Confidence            57889999999999999988865 4 45999999999998642 33333220   0                  124555


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|+.+.+                                                               ...+.||+
T Consensus       153 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~  169 (258)
T 2pwy_A          153 HLGKLEEAE---------------------------------------------------------------LEEAAYDG  169 (258)
T ss_dssp             EESCGGGCC---------------------------------------------------------------CCTTCEEE
T ss_pred             EECchhhcC---------------------------------------------------------------CCCCCcCE
Confidence            555432210                                                               12357999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+. +    ......+++.+.++|+ |+|.+++.....     ....++.+.+++.|+...+..
T Consensus       170 v~~-~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          170 VAL-D----LMEPWKVLEKAALALK-PDRFLVAYLPNI-----TQVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             EEE-E----SSCGGGGHHHHHHHEE-EEEEEEEEESCH-----HHHHHHHHHHTTTTEEEEEEE
T ss_pred             EEE-C----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCceEEEE
Confidence            997 2    3344466777778887 899988876432     245678888888887554443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.71  E-value=1.7e-07  Score=82.24  Aligned_cols=40  Identities=25%  Similarity=0.497  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      +++.+|||+|||+|..++.++.. +..+|+++|+++.+++.
T Consensus        64 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~  104 (207)
T 1jsx_A           64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRF  104 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            35889999999999999988864 34599999999999854

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.71  E-value=2.6e-07  Score=83.73  Aligned_cols=133  Identities=17%  Similarity=0.245  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ++++|||+|||+|..++.++... ..+|++.|+++.+++.     .+.|+...                 .+..++++..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  128 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQY-----AKQNLATY-----------------HFENQVRIIE  128 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEEE
Confidence            67899999999999999988732 4589999999999854     33344321                 1233577766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+.                                                        +.   +  ...+.||+|+
T Consensus       129 ~d~~~~--------------------------------------------------------~~---~--~~~~~fD~V~  147 (232)
T 3ntv_A          129 GNALEQ--------------------------------------------------------FE---N--VNDKVYDMIF  147 (232)
T ss_dssp             SCGGGC--------------------------------------------------------HH---H--HTTSCEEEEE
T ss_pred             CCHHHH--------------------------------------------------------HH---h--hccCCccEEE
Confidence            654321                                                        00   0  0136799999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc---------------cchHHHHHHhhhhcCceeeEEe
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF---------------NNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv---------------~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      ..   .....++.+++.+.++|+ |+|++++-. -.+.|.               ....++|.+.+.+..-+...++
T Consensus       148 ~~---~~~~~~~~~l~~~~~~Lk-pgG~lv~d~-~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  219 (232)
T 3ntv_A          148 ID---AAKAQSKKFFEIYTPLLK-HQGLVITDN-VLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL  219 (232)
T ss_dssp             EE---TTSSSHHHHHHHHGGGEE-EEEEEEEEC-TTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             Ec---CcHHHHHHHHHHHHHhcC-CCeEEEEee-CCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            54   346678888998999997 899887731 111111               1246788888877765665554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.71  E-value=3.2e-07  Score=81.74  Aligned_cols=138  Identities=19%  Similarity=0.192  Sum_probs=88.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|+..+                 .+..++++
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~  120 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTAL-----AKEYWEKA-----------------GLSDKIGL  120 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHH-----HHHHHHHC-----------------CCCCceEE
Confidence            36789999999999999998864 2 4689999999999854     33444321                 12335777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +..                    +                                  ........||+
T Consensus       121 ~~~d~~~~---~~~--------------------~----------------------------------~~~~~~~~fD~  143 (225)
T 3tr6_A          121 RLSPAKDT---LAE--------------------L----------------------------------IHAGQAWQYDL  143 (225)
T ss_dssp             EESCHHHH---HHH--------------------H----------------------------------HTTTCTTCEEE
T ss_pred             EeCCHHHH---HHH--------------------h----------------------------------hhccCCCCccE
Confidence            77665331   000                    0                                  00011268999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc----------cchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv----------~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+. |.  ....+..+++.+.++|+ |+|++++..-. +.|.          ...+++|.+.+.++.-+...++
T Consensus       144 v~~-~~--~~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  212 (225)
T 3tr6_A          144 IYI-DA--DKANTDLYYEESLKLLR-EGGLIAVDNVL-RRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI  212 (225)
T ss_dssp             EEE-CS--CGGGHHHHHHHHHHHEE-EEEEEEEECSS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEE-CC--CHHHHHHHHHHHHHhcC-CCcEEEEeCCC-cCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            993 22  35567888888888997 89988875321 1111          1157888888887765665554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.70  E-value=6.7e-07  Score=80.49  Aligned_cols=39  Identities=28%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. ..+|+++|+++.+++.
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~  128 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKT  128 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHH
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHH
Confidence            47889999999999999988876 4599999999998854

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.69  E-value=3.9e-08  Score=96.63  Aligned_cols=47  Identities=32%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++++|||+|||+|..++.++..|+.+|++.|+++.+++. ...|+.+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~-a~~n~~~n  263 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIET-AKENAKLN  263 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            788999999999999999998888899999999999865 34555544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.69  E-value=1.2e-07  Score=100.54  Aligned_cols=48  Identities=27%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .+|++|||+|||||..++.++..|+.+|++.|+|+.+++. ...|+.+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~-a~~N~~~n  585 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEW-AERNLRLN  585 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            4789999999999999999998888889999999999965 45666655

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.69  E-value=2.7e-07  Score=83.34  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. |..+|++.|+++.+++.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~  113 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE  113 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHH
Confidence            36789999999999999988864 55699999999998854

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.69  E-value=2.9e-07  Score=80.96  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++++|||+|||+|..++.++..|..+|++.|+++.+++.
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~   87 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV   87 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            35788999999999999999988877789999999998854

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.68  E-value=3.7e-07  Score=76.52  Aligned_cols=135  Identities=15%  Similarity=0.182  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .+...+.+.+...    ....++.+|||+|||+|..++.++.. |. .+|++.|+++ +++.                  
T Consensus         5 r~~~~l~~~~~~~----~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------------   61 (180)
T 1ej0_A            5 RAWFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------------   61 (180)
T ss_dssp             HHHHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------------
T ss_pred             hHHHHHHHHHHHh----CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------------
Confidence            3444455555443    12356789999999999999988765 43 6899999999 6421                  


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                     .++++..+|+.+.+....                     +                         
T Consensus        62 ---------------~~~~~~~~d~~~~~~~~~---------------------~-------------------------   80 (180)
T 1ej0_A           62 ---------------VGVDFLQGDFRDELVMKA---------------------L-------------------------   80 (180)
T ss_dssp             ---------------TTEEEEESCTTSHHHHHH---------------------H-------------------------
T ss_pred             ---------------CcEEEEEcccccchhhhh---------------------h-------------------------
Confidence                           135666666654321000                     0                         


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCH-----------HHHHHHHHHHcCCCCeEEEEEeccccccccchHHHH
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSL-----------KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL  322 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~-----------~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F  322 (351)
                               ......+.||+|++...++.....           ..+++.+.++|+ |+|.+++..-.     ......+
T Consensus        81 ---------~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~-----~~~~~~~  145 (180)
T 1ej0_A           81 ---------LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQ-----GEGFDEY  145 (180)
T ss_dssp             ---------HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEES-----STTHHHH
T ss_pred             ---------hccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEec-----CCcHHHH
Confidence                     000124689999997776655444           677888888897 89998876432     1245667


Q ss_pred             HHhhhhc
Q 018716          323 RSLVDEE  329 (351)
Q Consensus       323 ~~~ve~~  329 (351)
                      .+.+++.
T Consensus       146 ~~~~~~~  152 (180)
T 1ej0_A          146 LREIRSL  152 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777663

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.67  E-value=9.4e-07  Score=79.50  Aligned_cols=73  Identities=16%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             CCCCCCCCCC----CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716           81 SEMISSKPDG----FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  154 (351)
Q Consensus        81 ~dl~~g~y~g----G~k~Weas-~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~  154 (351)
                      ..+.+..|..    ....|..- ..++..+...+.  ....++.+|||+|||+|..+..++.. |..+|++.|+++.+++
T Consensus        18 ~~~~~~~Y~~~~~~~y~~~~~~~~~l~~~~~~~l~--~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~   95 (210)
T 1nt2_A           18 KSKYGSHYGEKVFDGYREWVPWRSKLAAMILKGHR--LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE   95 (210)
T ss_dssp             ECSCCCSSSCCEETTEEECCGGGCHHHHHHHTSCC--CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH
T ss_pred             ccCCccccchhhhhhhhhcChhHHHHHHHHHhhcc--cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            3344455665    45567542 234444433221  11246889999999999998877753 3458999999999875


Q ss_pred             h
Q 018716          155 C  155 (351)
Q Consensus       155 ~  155 (351)
                      .
T Consensus        96 ~   96 (210)
T 1nt2_A           96 K   96 (210)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.66  E-value=3.4e-08  Score=100.25  Aligned_cols=63  Identities=29%  Similarity=0.412  Sum_probs=47.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ..++++|||+|||+|..++.++..|+.+|+++|+++ +++. ...|+..|.                     +..+|++.
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~-A~~~~~~~g---------------------l~~~v~~~  212 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH-AEVLVKSNN---------------------LTDRIVVI  212 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHH-HHHHHHHTT---------------------CTTTEEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHH-HHHHHHHcC---------------------CCCcEEEE
Confidence            357899999999999999999988878999999998 7743 334444331                     23468887


Q ss_pred             eccCCC
Q 018716          195 AGDWEE  200 (351)
Q Consensus       195 ~gdW~~  200 (351)
                      .+|+.+
T Consensus       213 ~~d~~~  218 (480)
T 3b3j_A          213 PGKVEE  218 (480)
T ss_dssp             ESCTTT
T ss_pred             ECchhh
Confidence            777654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.65  E-value=4.6e-07  Score=88.45  Aligned_cols=47  Identities=15%  Similarity=0.166  Sum_probs=38.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++++|||+| |+|..++.++..+. .+|++.|+++.+++. .+.|+..|
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~-a~~~~~~~  218 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKF-IEKAANEI  218 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHH-HHHHHHHH
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            5789999999 99999999988775 799999999999865 34454443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.65  E-value=2.2e-07  Score=88.48  Aligned_cols=150  Identities=13%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ++++|||||||+|.....++.. +..+|++.|+++.+++.+ +.|+... ...  .               ..+++++..
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a-~~~~~~~-~~~--~---------------~~~~v~~~~  155 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS-KQHFPQI-SRS--L---------------ADPRATVRV  155 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH-HHHCHHH-HGG--G---------------GCTTEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHhHHh-hcc--c---------------CCCcEEEEE
Confidence            5689999999999999988865 456999999999998653 2333210 000  0               123566665


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+..                                                            . ....+.||+|+
T Consensus       156 ~D~~~~~------------------------------------------------------------~-~~~~~~fDvIi  174 (304)
T 3bwc_A          156 GDGLAFV------------------------------------------------------------R-QTPDNTYDVVI  174 (304)
T ss_dssp             SCHHHHH------------------------------------------------------------H-SSCTTCEEEEE
T ss_pred             CcHHHHH------------------------------------------------------------H-hccCCceeEEE
Confidence            5432210                                                            0 00246799999


Q ss_pred             EeccccCc-cC--H--HHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEeee-cCC--cceee
Q 018716          276 LTEIPYSV-TS--L--KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKE-MTD--RDIWK  347 (351)
Q Consensus       276 asDviY~~-~~--~--~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e-~~d--~~i~~  347 (351)
                      + |..+.. ..  +  ..+++.++++|+ |+|++++.....++. ......+.+.+++.|+-.++.... ++.  ...|.
T Consensus       175 ~-d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~~~~~-~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~  251 (304)
T 3bwc_A          175 I-DTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGESIWLD-LELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG  251 (304)
T ss_dssp             E-ECC---------CCHHHHHHHHHHEE-EEEEEEEEECCTTTC-HHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred             E-CCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecCCcccc-hHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence            8 333211 11  1  577888899997 899988875443221 235677888888888644443322 232  35676


Q ss_pred             ee
Q 018716          348 FF  349 (351)
Q Consensus       348 ~~  349 (351)
                      |.
T Consensus       252 f~  253 (304)
T 3bwc_A          252 TL  253 (304)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.65  E-value=1.3e-07  Score=88.36  Aligned_cols=48  Identities=15%  Similarity=0.067  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++++|||+|||+|..++.++.. ++.+|++.|+++.+++. .+.|+..|
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~-a~~n~~~n  166 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHY-LCENIKLN  166 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            46889999999999999999875 45699999999999865 34454444

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.64  E-value=4.8e-07  Score=82.16  Aligned_cols=150  Identities=19%  Similarity=0.159  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      +....+...|....    ..-++.+|||+|||+|..++.++. .+ ..+|++.|+++++++.     .+.|+..+     
T Consensus        39 ~~~~~~l~~l~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----  104 (221)
T 3dr5_A           39 EMTGQLLTTLAATT----NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQ-----AKALFREA-----  104 (221)
T ss_dssp             HHHHHHHHHHHHHS----CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHH-----HHHHHHHT-----
T ss_pred             HHHHHHHHHHHHhh----CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----
Confidence            34445555555441    111234999999999999998876 22 3589999999999854     33444321     


Q ss_pred             cCCCCCCCCcccCCC-CceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 018716          174 RQPESSLTPSRQTLA-PSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL  252 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~-~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~l  252 (351)
                                  .+. .++++..+|..+.   +.                                              
T Consensus       105 ------------g~~~~~i~~~~gda~~~---l~----------------------------------------------  123 (221)
T 3dr5_A          105 ------------GYSPSRVRFLLSRPLDV---MS----------------------------------------------  123 (221)
T ss_dssp             ------------TCCGGGEEEECSCHHHH---GG----------------------------------------------
T ss_pred             ------------CCCcCcEEEEEcCHHHH---HH----------------------------------------------
Confidence                        122 3577665543220   00                                              


Q ss_pred             cCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc------c----chHHHH
Q 018716          253 SGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF------N----NAARHL  322 (351)
Q Consensus       253 s~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv------~----gg~~~F  322 (351)
                                  ....+.||+|+.. .  ....++.+++.+.++|+ |+|++++..--. .|.      .    .++++|
T Consensus       124 ------------~~~~~~fD~V~~d-~--~~~~~~~~l~~~~~~Lk-pGG~lv~dn~~~-~g~v~~~~~~~~~~~~~~~~  186 (221)
T 3dr5_A          124 ------------RLANDSYQLVFGQ-V--SPMDLKALVDAAWPLLR-RGGALVLADALL-DGTIADQTRKDRDTQAARDA  186 (221)
T ss_dssp             ------------GSCTTCEEEEEEC-C--CTTTHHHHHHHHHHHEE-EEEEEEETTTTG-GGTCSCSSCCCHHHHHHHHH
T ss_pred             ------------HhcCCCcCeEEEc-C--cHHHHHHHHHHHHHHcC-CCcEEEEeCCCC-CCcCCCCCCCChHHHHHHHH
Confidence                        0114689999863 2  34567788888888997 889888742111 010      0    145889


Q ss_pred             HHhhhhcCceeeEEe
Q 018716          323 RSLVDEEGIFGAHLI  337 (351)
Q Consensus       323 ~~~ve~~G~~~~~~v  337 (351)
                      .+++.+..-+...++
T Consensus       187 ~~~l~~~~~~~~~~l  201 (221)
T 3dr5_A          187 DEYIRSIEGAHVARL  201 (221)
T ss_dssp             HHHHTTCTTEEEEEE
T ss_pred             HHHHhhCCCeeEEEe
Confidence            999988765666554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.64  E-value=3.2e-07  Score=82.36  Aligned_cols=39  Identities=13%  Similarity=-0.121  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||+|||+|..++.++.. ...+|++.|+++.+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~   77 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   77 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHH
Confidence            5679999999999999988864 34589999999999864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.64  E-value=4.1e-07  Score=85.81  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716           98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus        98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      +..|++++.....    ..++.+|||+|||+|..++.++..+..+|+++|+|+.+++. ...|+..|.            
T Consensus       108 te~lv~~~l~~~~----~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~-A~~n~~~~~------------  170 (284)
T 1nv8_A          108 TEELVELALELIR----KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEI-ARKNAERHG------------  170 (284)
T ss_dssp             HHHHHHHHHHHHH----HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHH-HHHHHHHTT------------
T ss_pred             HHHHHHHHHHHhc----ccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcC------------
Confidence            3466666665432    12567999999999999999886644589999999999865 344444331            


Q ss_pred             CCCCCcccCCCCceeeeeccCCC
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEE  200 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~  200 (351)
                               +..+++|..+||.+
T Consensus       171 ---------l~~~v~~~~~D~~~  184 (284)
T 1nv8_A          171 ---------VSDRFFVRKGEFLE  184 (284)
T ss_dssp             ---------CTTSEEEEESSTTG
T ss_pred             ---------CCCceEEEECcchh
Confidence                     22358888887754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.64  E-value=4.6e-07  Score=83.61  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|.+++.+++.+ +.+|+++|+++.+++. ...|+..|
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~-A~~N~~~~   62 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQS-AVKNVEAH   62 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            467899999999999999999876 4689999999999854 34555544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.63  E-value=2.1e-07  Score=82.01  Aligned_cols=39  Identities=18%  Similarity=0.032  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..+ .+|+++|+++.+++.
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~  114 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQ  114 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHH
Confidence            578899999999999999888775 589999999998854

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.63  E-value=4.9e-07  Score=79.94  Aligned_cols=59  Identities=17%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      .+.||+|++..+++. .....+++.+.++|+ |+|.+++..-...+   ....++.+.+++.|+
T Consensus       113 ~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~-~gG~l~i~~~~~~~---~~~~~~~~~l~~~Gf  171 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-TNIRDFLEEANRVLK-PGGLLKVAEVSSRF---EDVRTFLRAVTKLGF  171 (215)
T ss_dssp             TTCEEEEEEESCCCS-SCHHHHHHHHHHHEE-EEEEEEEEECGGGC---SCHHHHHHHHHHTTE
T ss_pred             CCCEeEEEEehhccc-cCHHHHHHHHHHhCC-CCeEEEEEEcCCCC---CCHHHHHHHHHHCCC
Confidence            467999999999974 777888888999997 89999987543332   267889999999996

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.62  E-value=3.8e-07  Score=84.46  Aligned_cols=48  Identities=17%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|+|+|||+|..++++++.| +.+|+++|+++.+++. ...|+..|
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~-A~~N~~~~   68 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQS-ALKNVSEH   68 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            467899999999999999999877 4689999999999854 44555554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.62  E-value=3e-07  Score=83.40  Aligned_cols=146  Identities=18%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ++++|||+|||+|..++.++.. + ..+|++.|+++.+++.     .+.|+..+                 .+..++++.
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------g~~~~v~~~  117 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNV-----ARKYWKEN-----------------GLENKIFLK  117 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCGGGEEEE
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCCEEEE
Confidence            6789999999999999988864 2 4589999999998854     23333321                 012247776


Q ss_pred             eccCCCC-cchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCC--CCc
Q 018716          195 AGDWEEL-PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGE--GGY  271 (351)
Q Consensus       195 ~gdW~~~-~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~--~~~  271 (351)
                      .+|..+. +.+..                    +.     .                    ...|....    ..  +.|
T Consensus       118 ~~d~~~~~~~~~~--------------------~~-----~--------------------~~~~~~~f----~~~~~~f  148 (239)
T 2hnk_A          118 LGSALETLQVLID--------------------SK-----S--------------------APSWASDF----AFGPSSI  148 (239)
T ss_dssp             ESCHHHHHHHHHH--------------------CS-----S--------------------CCGGGTTT----CCSTTCE
T ss_pred             ECCHHHHHHHHHh--------------------hc-----c--------------------cccccccc----cCCCCCc
Confidence            6654331 00000                    00     0                    00243222    22  689


Q ss_pred             cEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc----------ccchHHHHHHhhhhcCceeeEEee
Q 018716          272 DVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       272 DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg----------v~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                      |+|+..   +....++.+++.+.++|+ |+|++++..-. +.|          .....++|.+.+.+...+.+.++.
T Consensus       149 D~I~~~---~~~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  220 (239)
T 2hnk_A          149 DLFFLD---ADKENYPNYYPLILKLLK-PGGLLIADNVL-WDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVP  220 (239)
T ss_dssp             EEEEEC---SCGGGHHHHHHHHHHHEE-EEEEEEEECSS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred             CEEEEe---CCHHHHHHHHHHHHHHcC-CCeEEEEEccc-cCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEE
Confidence            999976   446677888888889997 89998886411 111          011457788888877767776553

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.62  E-value=1.8e-07  Score=86.92  Aligned_cols=51  Identities=25%  Similarity=0.187  Sum_probs=40.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .|.+++....    ...++.+|||+|||+|...+.++..|. +|++.|+|+.+++.
T Consensus        55 ~l~~~~~~~~----~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~  105 (252)
T 2gb4_A           55 LLKKHLDTFL----KGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIRE  105 (252)
T ss_dssp             HHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             HHHHHHHHhc----cCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            4666665432    113678999999999999999998887 89999999999854

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.62  E-value=3.4e-07  Score=85.53  Aligned_cols=48  Identities=10%  Similarity=0.126  Sum_probs=39.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|.+++++++.| +.+|+++|+++.+++. .+.|+..|
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~-A~~N~~~~   68 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQS-AQKQVRSS   68 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            467899999999999999999877 4589999999999864 45555555

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.61  E-value=3.7e-07  Score=80.85  Aligned_cols=130  Identities=14%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ++++|||+|||+|..++.++.. + ..+|++.|+++.+++. ...|+..+.                     +..++++.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~---------------------~~~~v~~~  113 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEH-ARRMLHDNG---------------------LIDRVELQ  113 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHH-HHHHHHHHS---------------------GGGGEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHCC---------------------CCceEEEE
Confidence            5789999999999999988864 2 3589999999999864 234443221                     12346666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.+.   +                                                         +  ...+ ||+|
T Consensus       114 ~~d~~~~---~---------------------------------------------------------~--~~~~-fD~v  130 (210)
T 3c3p_A          114 VGDPLGI---A---------------------------------------------------------A--GQRD-IDIL  130 (210)
T ss_dssp             ESCHHHH---H---------------------------------------------------------T--TCCS-EEEE
T ss_pred             EecHHHH---h---------------------------------------------------------c--cCCC-CCEE
Confidence            5543220   0                                                         0  0124 9999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc---------ccchHHHHHHhhhhcCceeeEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------FNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg---------v~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +..   .....++.+++.+.++|+ |+|++++..- .+.|         ....+++|.+.+.+..-+...+
T Consensus       131 ~~~---~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (210)
T 3c3p_A          131 FMD---CDVFNGADVLERMNRCLA-KNALLIAVNA-LRRGSVAESHEDPETAALREFNHHLSRRRDFFTTI  196 (210)
T ss_dssp             EEE---TTTSCHHHHHHHHGGGEE-EEEEEEEESS-SSCC------------CCCHHHHHHTTCTTEEEEE
T ss_pred             EEc---CChhhhHHHHHHHHHhcC-CCeEEEEECc-cccCcccCcccchHHHHHHHHHHHHhhCCCeEEEE
Confidence            875   335678888888889997 8998887421 1111         1124667888776654444443

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.59  E-value=4.5e-07  Score=82.79  Aligned_cols=49  Identities=10%  Similarity=0.115  Sum_probs=39.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .++.+|||+|||+|..++.++..+. .+|++.|+++.+++. ...|+..|.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~   97 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNY-VEDRIIALR   97 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHH-HHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHH-HHHHHHHHh
Confidence            3678999999999999999887654 489999999999865 356666554

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.58  E-value=5.9e-07  Score=80.05  Aligned_cols=69  Identities=12%  Similarity=0.112  Sum_probs=51.0

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc----------------cc--ccchHHHHHHhhhhc
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------VG--FNNAARHLRSLVDEE  329 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y----------------fg--v~gg~~~F~~~ve~~  329 (351)
                      .+.||+|++..+++.......+++.+.++|+ |+|.+++..-...                +.  ..-...++.+.+++.
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  178 (219)
T 1vlm_A          100 DESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA  178 (219)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             CCCeeEEEEcchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHC
Confidence            4679999999999988888999999999997 8999988732110                00  011568889999999


Q ss_pred             CceeeEEe
Q 018716          330 GIFGAHLI  337 (351)
Q Consensus       330 G~~~~~~v  337 (351)
                      |+-..++.
T Consensus       179 Gf~~~~~~  186 (219)
T 1vlm_A          179 GFEEFKVV  186 (219)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEe
Confidence            97444433

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.57  E-value=1.2e-07  Score=92.93  Aligned_cols=46  Identities=30%  Similarity=0.249  Sum_probs=38.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++++|||+|||+|..++.++.. +.+|+++|+++.+++. ...|+.+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~-a~~n~~~n  254 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRR-AEENARLN  254 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence            6789999999999999999876 6689999999999865 34555544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.57  E-value=3.2e-07  Score=84.32  Aligned_cols=138  Identities=20%  Similarity=0.256  Sum_probs=89.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|++.|+++++++. .+.|+..+.                     +..+|++
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~g---------------------~~~~i~~  116 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKH-AHPYWREAK---------------------QEHKIKL  116 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCC-SHHHHHHTT---------------------CTTTEEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence            36789999999999999998862 2 3589999999998854 344443321                     2346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +..                                                  .   .+ ....+.||+
T Consensus       117 ~~gda~~~---l~~--------------------------------------------------~---~~-~~~~~~fD~  139 (242)
T 3r3h_A          117 RLGPALDT---LHS--------------------------------------------------L---LN-EGGEHQFDF  139 (242)
T ss_dssp             EESCHHHH---HHH--------------------------------------------------H---HH-HHCSSCEEE
T ss_pred             EEcCHHHH---HHH--------------------------------------------------H---hh-ccCCCCEeE
Confidence            77664321   000                                                  0   00 001468999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc----------cchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv----------~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+..-   ....+..+++.+.++|+ |+|++++-.-. +.|.          ...+++|.+.+.++.-|...++
T Consensus       140 V~~d~---~~~~~~~~l~~~~~~Lk-pGG~lv~d~~~-~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (242)
T 3r3h_A          140 IFIDA---DKTNYLNYYELALKLVT-PKGLIAIDNIF-WDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL  208 (242)
T ss_dssp             EEEES---CGGGHHHHHHHHHHHEE-EEEEEEEECSS-SSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             EEEcC---ChHHhHHHHHHHHHhcC-CCeEEEEECCc-cCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE
Confidence            98642   25667788888888997 89988874211 1111          1247889999988766666654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.57  E-value=6.1e-07  Score=80.29  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. | ..+|++.|+++.+++.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~  113 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE  113 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHH
Confidence            46889999999999999988854 4 3589999999998854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.57  E-value=2.2e-07  Score=85.14  Aligned_cols=38  Identities=32%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ++++|||+|||+|..+..++..|. +|+++|+++.+++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~   91 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEV   91 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            678999999999999999887765 89999999998853

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.57  E-value=2.5e-06  Score=80.87  Aligned_cols=132  Identities=15%  Similarity=0.154  Sum_probs=87.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ++++|||+|||+|..++.++.. ...+++++|+ +.+++.. ..|+..+.                     +..+|++..
T Consensus       167 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~~~~---------------------~~~~v~~~~  223 (334)
T 2ip2_A          167 RGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVA-RDNLSSLL---------------------AGERVSLVG  223 (334)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHH-HHHTHHHH---------------------HTTSEEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHH-HHHHhhcC---------------------CCCcEEEec
Confidence            3389999999999999888754 3358999999 8887542 23332221                     123566666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+ +                                                                ...+||+|+
T Consensus       224 ~d~~~-~----------------------------------------------------------------~~~~~D~v~  238 (334)
T 2ip2_A          224 GDMLQ-E----------------------------------------------------------------VPSNGDIYL  238 (334)
T ss_dssp             SCTTT-C----------------------------------------------------------------CCSSCSEEE
T ss_pred             CCCCC-C----------------------------------------------------------------CCCCCCEEE
Confidence            54422 0                                                                124699999


Q ss_pred             EeccccC--ccCHHHHHHHHHHHcCCCCeEEEEEeccc----------cc---------cccchHHHHHHhhhhcCceee
Q 018716          276 LTEIPYS--VTSLKKLYLLIKKCLRPPYGVVYLATKKN----------YV---------GFNNAARHLRSLVDEEGIFGA  334 (351)
Q Consensus       276 asDviY~--~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----------yf---------gv~gg~~~F~~~ve~~G~~~~  334 (351)
                      +..++++  .+....+++-+.+.|+ |+|.+++..-..          ++         |......+|.+.+++.|+-..
T Consensus       239 ~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  317 (334)
T 2ip2_A          239 LSRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVE  317 (334)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred             EchhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCcee
Confidence            9999963  4445688888888997 899988873110          00         112257889999999997444


Q ss_pred             EEe
Q 018716          335 HLI  337 (351)
Q Consensus       335 ~~v  337 (351)
                      ++.
T Consensus       318 ~~~  320 (334)
T 2ip2_A          318 RIV  320 (334)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.57  E-value=2.3e-07  Score=92.02  Aligned_cols=46  Identities=26%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +|++|||+|||||..++.++..|+. |++.|+|+.+++. +..|+.+|
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~-a~~n~~~n  259 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGV-LDQAALRL  259 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHH-HHHHHHHh
Confidence            4899999999999999999988885 9999999999965 45666666

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.57  E-value=8.2e-07  Score=79.87  Aligned_cols=39  Identities=15%  Similarity=0.148  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ++++|||+|||+|..++.++.. +..+|++.|+++.+++.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~   93 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEE   93 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            6789999999999999988864 23589999999998854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.56  E-value=4.2e-07  Score=80.69  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++... ..+|++.|+++.|++.
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEK   66 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHH
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            367899999999999999988753 4589999999998853

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.56  E-value=1e-06  Score=78.65  Aligned_cols=138  Identities=17%  Similarity=0.173  Sum_probs=86.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++.. + ..+|++.|+++.+++.. +.|+..+.                     +..++++
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~g---------------------~~~~i~~  125 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG-RPLWRQAE---------------------AEHKIDL  125 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH-HHHHHHTT---------------------CTTTEEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHCC---------------------CCCeEEE
Confidence            46789999999999999988863 2 45899999999988542 33333211                     2235677


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +.                                                  ...   . .....+||+
T Consensus       126 ~~~d~~~~---~~--------------------------------------------------~~~---~-~~~~~~~D~  148 (229)
T 2avd_A          126 RLKPALET---LD--------------------------------------------------ELL---A-AGEAGTFDV  148 (229)
T ss_dssp             EESCHHHH---HH--------------------------------------------------HHH---H-TTCTTCEEE
T ss_pred             EEcCHHHH---HH--------------------------------------------------HHH---h-cCCCCCccE
Confidence            66554221   00                                                  000   0 001257999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc----------ccchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg----------v~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+..- .  ...+..+++.+.++|+ |+|++++..-. +.|          ....+++|.+.+.++.-+.+.++
T Consensus       149 v~~d~-~--~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  217 (229)
T 2avd_A          149 AVVDA-D--KENCSAYYERCLQLLR-PGGILAVLRVL-WRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL  217 (229)
T ss_dssp             EEECS-C--STTHHHHHHHHHHHEE-EEEEEEEECCS-GGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEECC-C--HHHHHHHHHHHHHHcC-CCeEEEEECCC-cCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEE
Confidence            98732 2  4567788888888997 89988875311 111          11246788888887765666544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.55  E-value=2.4e-07  Score=83.94  Aligned_cols=39  Identities=10%  Similarity=0.093  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||||||+|..++.++... ..+|++.|+++.+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~   73 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA   73 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHH
Confidence            56799999999999999888643 3589999999999854

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.54  E-value=3.4e-07  Score=86.31  Aligned_cols=118  Identities=15%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      ++.+|||+|||+|..+..++..+..+|+++|+++.+++.. ..+...+..    +   ..        .....++++..+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a-~~~~~~~~~----~---~~--------~~~~~~~~~~~~   97 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQC-QQRYEDMKN----R---RD--------SEYIFSAEFITA   97 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHH-HHHHHHHHS----S---SC--------C-CCCEEEEEEC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHH-HHHHHHhhh----c---cc--------ccccceEEEEEe
Confidence            6789999999999998887765566999999999998653 222221110    0   00        001235677776


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |....+. .                             +               .+            ....+.||+|++
T Consensus        98 D~~~~~~-~-----------------------------~---------------~~------------~~~~~~fD~V~~  120 (313)
T 3bgv_A           98 DSSKELL-I-----------------------------D---------------KF------------RDPQMCFDICSC  120 (313)
T ss_dssp             CTTTSCS-T-----------------------------T---------------TC------------SSTTCCEEEEEE
T ss_pred             cccccch-h-----------------------------h---------------hc------------ccCCCCEEEEEE
Confidence            6654320 0                             0               00            012358999999


Q ss_pred             eccccCc----cCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          277 TEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       277 sDviY~~----~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +.++...    +....+++-+.++|+ |+|++++..
T Consensus       121 ~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~  155 (313)
T 3bgv_A          121 QFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTT  155 (313)
T ss_dssp             ETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             ecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEec
Confidence            9998544    335577777778887 899998875

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.54  E-value=1.3e-06  Score=83.48  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=46.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      +-.++.-|.+.|...    ....++++|||+|||||..+..++..|+.+|++.|++++||+
T Consensus        66 vsrg~~Kl~~~l~~~----~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~  122 (291)
T 3hp7_A           66 VSRGGLKLEKALAVF----NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLV  122 (291)
T ss_dssp             SSTTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSC
T ss_pred             ccchHHHHHHHHHhc----CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            345666777777654    345689999999999999999888888889999999999974

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.53  E-value=1.8e-06  Score=83.03  Aligned_cols=132  Identities=14%  Similarity=0.090  Sum_probs=88.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++++|||+|||+|..++.++... ..+++++|+ +.+++.     .+.|....                 .+..++++.
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  245 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-----VNENAAEK-----------------GVADRMRGI  245 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHH-----HHHHHHhc-----------------CCCCCEEEE
Confidence            467899999999999998887642 348999999 888854     33343321                 123357776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                                 ...+|+|
T Consensus       246 ~~d~~~~~-----------------------------------------------------------------~~~~D~v  260 (359)
T 1x19_A          246 AVDIYKES-----------------------------------------------------------------YPEADAV  260 (359)
T ss_dssp             ECCTTTSC-----------------------------------------------------------------CCCCSEE
T ss_pred             eCccccCC-----------------------------------------------------------------CCCCCEE
Confidence            66543310                                                                 1123999


Q ss_pred             EEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEeccc----------------ccccc------chHHHHHHhhhhcC
Q 018716          275 LLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFN------NAARHLRSLVDEEG  330 (351)
Q Consensus       275 LasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~~----------------yfgv~------gg~~~F~~~ve~~G  330 (351)
                      +++.++++-..  ...+++-+.+.|+ |+|.+++..-..                ..+.+      -...+|.+.+++.|
T Consensus       261 ~~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aG  339 (359)
T 1x19_A          261 LFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG  339 (359)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHT
T ss_pred             EEechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCC
Confidence            99999976554  7778888888897 899987764110                01111      36778999999999


Q ss_pred             ceeeEE
Q 018716          331 IFGAHL  336 (351)
Q Consensus       331 ~~~~~~  336 (351)
                      +-..++
T Consensus       340 f~~v~~  345 (359)
T 1x19_A          340 YKDVTM  345 (359)
T ss_dssp             CEEEEE
T ss_pred             CceEEE
Confidence            744443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.53  E-value=5.5e-07  Score=86.84  Aligned_cols=46  Identities=22%  Similarity=0.253  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++++|||+|||+|..++. +. ++.+|++.|+|+.+++. .+.|+..|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~-a~~n~~~n  239 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIEL-LKKNIKLN  239 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            3788999999999999999 87 67799999999999865 34555544

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.52  E-value=6.1e-07  Score=79.35  Aligned_cols=57  Identities=18%  Similarity=0.130  Sum_probs=40.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-C-CEEEEEcCChHHHHh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-A-GTVHFQDLSAETIRC  155 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a-~~V~~TD~s~~vL~~  155 (351)
                      .|... .+...+.+..    ...++.+|||+|||+|..++.++..+ . .+|+++|+++.+++.
T Consensus        59 ~~~~~-~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~  117 (215)
T 2yxe_A           59 TISAI-HMVGMMCELL----DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEK  117 (215)
T ss_dssp             EECCH-HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             EeCcH-HHHHHHHHhh----CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            34444 3444444442    23578899999999999998887643 2 589999999998854

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.52  E-value=1.3e-06  Score=76.69  Aligned_cols=40  Identities=25%  Similarity=0.410  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++..|..+|++.|+++.+++.
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~   89 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET   89 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            5788999999999999999988777789999999998854

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.52  E-value=1.3e-06  Score=80.44  Aligned_cols=40  Identities=33%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. + ..+|++.|+++.+++.
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~  139 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEH  139 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            57889999999999999988863 3 4589999999999864

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.52  E-value=3.6e-06  Score=80.98  Aligned_cols=131  Identities=18%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++... ..+++++|+ +.+++.     .+.|....                 .+..+|++.
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  237 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAER-----ARRRFADA-----------------GLADRVTVA  237 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHH-----HHHHHHhc-----------------CCCCceEEE
Confidence            357899999999999998887653 348999999 888854     33343321                 123357776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.                                                                 ...+||+|
T Consensus       238 ~~d~~~~-----------------------------------------------------------------~~~~~D~v  252 (374)
T 1qzz_A          238 EGDFFKP-----------------------------------------------------------------LPVTADVV  252 (374)
T ss_dssp             ECCTTSC-----------------------------------------------------------------CSCCEEEE
T ss_pred             eCCCCCc-----------------------------------------------------------------CCCCCCEE
Confidence            6554220                                                                 01249999


Q ss_pred             EEeccccCccCH--HHHHHHHHHHcCCCCeEEEEEec--ccc----------c---------cccchHHHHHHhhhhcCc
Q 018716          275 LLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATK--KNY----------V---------GFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       275 LasDviY~~~~~--~~L~~~l~~~L~~p~gv~ylA~K--~~y----------f---------gv~gg~~~F~~~ve~~G~  331 (351)
                      ++..++++-..-  ..+++-+.+.|+ |+|.+++..-  ...          +         |..-+..++.+.+++.|+
T Consensus       253 ~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf  331 (374)
T 1qzz_A          253 LLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL  331 (374)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred             EEeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence            999999754433  478888888897 8998887643  100          0         111257788899999996


Q ss_pred             eeeE
Q 018716          332 FGAH  335 (351)
Q Consensus       332 ~~~~  335 (351)
                      -..+
T Consensus       332 ~~~~  335 (374)
T 1qzz_A          332 ALAS  335 (374)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            3333

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.52  E-value=7.2e-07  Score=79.71  Aligned_cols=56  Identities=16%  Similarity=0.161  Sum_probs=42.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .|... .+...+....    ...++.+|||+|||+|..+..++..+ .+|+++|+++.+++.
T Consensus        52 ~~~~~-~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~  107 (231)
T 1vbf_A           52 NTTAL-NLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNY  107 (231)
T ss_dssp             EECCH-HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred             ccCCH-HHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHH
Confidence            35444 4455555442    23467899999999999999988776 599999999998854

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.52  E-value=3.6e-08  Score=101.66  Aligned_cols=37  Identities=35%  Similarity=0.472  Sum_probs=33.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      ++.||||+|||+|+.+..+|+.|+ +|++.|.++.+++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~  102 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENIN  102 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHH
Confidence            567999999999999999999998 8999999998774

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.51  E-value=1.7e-06  Score=84.49  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=40.9

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~  155 (351)
                      ..++..|....     ..++.+|||+|||+|...+.++..+. .+|+++|+++.+++.
T Consensus       204 ~~la~~l~~~~-----~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~  256 (373)
T 3tm4_A          204 ASIANAMIELA-----ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIG  256 (373)
T ss_dssp             HHHHHHHHHHH-----TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhh-----cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence            35566555542     24678999999999999999998764 389999999999865

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.49  E-value=3.5e-06  Score=80.03  Aligned_cols=131  Identities=13%  Similarity=0.052  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ...+|||+|||+|...+.++.. ...++++.|+ +.+++.     .+.+....                 .+..+|+|..
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  225 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASA-----AHRRFLDT-----------------GLSGRAQVVV  225 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHH-----HHHhhhhc-----------------CcCcCeEEec
Confidence            4579999999999999887753 3458999999 888743     33343311                 1234677766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+ +                                                                ...+||+|+
T Consensus       226 ~d~~~-~----------------------------------------------------------------~p~~~D~v~  240 (332)
T 3i53_A          226 GSFFD-P----------------------------------------------------------------LPAGAGGYV  240 (332)
T ss_dssp             CCTTS-C----------------------------------------------------------------CCCSCSEEE
T ss_pred             CCCCC-C----------------------------------------------------------------CCCCCcEEE
Confidence            55421 0                                                                012799999


Q ss_pred             EeccccCccC--HHHHHHHHHHHcCCCCeEEEEEeccc-------c---------ccccchHHHHHHhhhhcCceeeEE
Q 018716          276 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN-------Y---------VGFNNAARHLRSLVDEEGIFGAHL  336 (351)
Q Consensus       276 asDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~~-------y---------fgv~gg~~~F~~~ve~~G~~~~~~  336 (351)
                      +..++++-+.  ...+++-+++.|+ |+|.+++.....       .         .|...+..+|.+.+++.|+-..++
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  318 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA  318 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            9999965544  5778888888997 899998863210       0         011235778999999999744444

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.49  E-value=1.5e-06  Score=79.34  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=87.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+.++|||+|||+|..++.++.. + ..+|++.|+++.+++.     .+.|+..+                 .+..++++
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-----a~~~~~~~-----------------g~~~~i~~  126 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEI-----GLPFIRKA-----------------GVEHKINF  126 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCGGGEEE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEE
Confidence            36789999999999999988763 2 3589999999999854     33343321                 12235777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..+|..+.   +..                    +                                 .+.....+.||+
T Consensus       127 ~~gda~~~---l~~--------------------l---------------------------------~~~~~~~~~fD~  150 (237)
T 3c3y_A          127 IESDAMLA---LDN--------------------L---------------------------------LQGQESEGSYDF  150 (237)
T ss_dssp             EESCHHHH---HHH--------------------H---------------------------------HHSTTCTTCEEE
T ss_pred             EEcCHHHH---HHH--------------------H---------------------------------HhccCCCCCcCE
Confidence            77665331   000                    0                                 000001467999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEec----ccccc----------ccchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK----KNYVG----------FNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K----~~yfg----------v~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |+..   .....++.+++.+.++|+ |+|++++-.-    .....          ....+++|.+.+.++.-|...++
T Consensus       151 I~~d---~~~~~~~~~l~~~~~~L~-pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~l  224 (237)
T 3c3y_A          151 GFVD---ADKPNYIKYHERLMKLVK-VGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHL  224 (237)
T ss_dssp             EEEC---SCGGGHHHHHHHHHHHEE-EEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEC---CchHHHHHHHHHHHHhcC-CCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9963   335678888999999997 8998876421    00000          01234588888887665665554

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.49  E-value=1.1e-06  Score=80.10  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=37.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc---CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~---Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++.+|||+|||+|..++.++..   +..+|+++|+++.+++. .+.|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~-A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLEL-AAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHH-HHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHH-HHHHHHHh
Confidence            5679999999999999988754   23589999999999975 45666544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.48  E-value=4e-07  Score=87.66  Aligned_cols=39  Identities=21%  Similarity=0.383  Sum_probs=33.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC-CEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga-~~V~~TD~s~~vL~~  155 (351)
                      .+.+|||+|||+|..++.++..+. .+|+++|+++.+++.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~  235 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEA  235 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHH
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            467999999999999999987664 489999999999854

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.48  E-value=1.5e-06  Score=82.81  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             CCCccEEEEeccc-c--CccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          268 EGGYDVILLTEIP-Y--SVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       268 ~~~~DlILasDvi-Y--~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      .+.||+|++..++ |  +......+++-+.++|+ |+|++++..
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~  169 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITT  169 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence            4689999999887 2  34456889999999997 999998764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.47  E-value=2.3e-06  Score=78.57  Aligned_cols=56  Identities=21%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      ..++..|.+.|...    ....++++|||||||||..+..++..|+.+|++.|+++.|++
T Consensus        19 srg~~kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~   74 (232)
T 3opn_A           19 SRGGLKLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLA   74 (232)
T ss_dssp             STTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred             CCcHHHHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence            34556676766654    245678999999999999999988888779999999999874

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.47  E-value=1.8e-06  Score=83.19  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=40.9

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~~  155 (351)
                      ..++..|....    ...++.+|||+|||+|...+.++..+  ..+|++.|+++.+++.
T Consensus       189 ~~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~  243 (354)
T 3tma_A          189 PVLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGL  243 (354)
T ss_dssp             HHHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHH
Confidence            35666666542    22467899999999999999988743  3589999999999854

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.46  E-value=1.1e-05  Score=78.24  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|...+.++.. ...+++++|+ +.+++.     .+.|....                 .+..+|+|.
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~l~~~v~~~  257 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEE-----ARELLTGR-----------------GLADRCEIL  257 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHH-----HHHhhhhc-----------------CcCCceEEe
Confidence            35689999999999999888764 2348999999 888743     34443321                 123467776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+ +                                                                ...+||+|
T Consensus       258 ~~d~~~-~----------------------------------------------------------------~p~~~D~v  272 (369)
T 3gwz_A          258 PGDFFE-T----------------------------------------------------------------IPDGADVY  272 (369)
T ss_dssp             ECCTTT-C----------------------------------------------------------------CCSSCSEE
T ss_pred             ccCCCC-C----------------------------------------------------------------CCCCceEE
Confidence            655431 0                                                                01279999


Q ss_pred             EEeccccCccCH--HHHHHHHHHHcCCCCeEEEEEeccc---------cc---------cccchHHHHHHhhhhcCceee
Q 018716          275 LLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKN---------YV---------GFNNAARHLRSLVDEEGIFGA  334 (351)
Q Consensus       275 LasDviY~~~~~--~~L~~~l~~~L~~p~gv~ylA~K~~---------yf---------gv~gg~~~F~~~ve~~G~~~~  334 (351)
                      ++..++++-+.-  ..+++-+.+.|+ |+|.+++..-..         ++         |......+|.+.+++.|+-..
T Consensus       273 ~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  351 (369)
T 3gwz_A          273 LIKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVE  351 (369)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEE
T ss_pred             EhhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEE
Confidence            999999765543  368888888897 899998863111         00         111357789999999997444


Q ss_pred             EEe
Q 018716          335 HLI  337 (351)
Q Consensus       335 ~~v  337 (351)
                      ++.
T Consensus       352 ~~~  354 (369)
T 3gwz_A          352 RSL  354 (369)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.46  E-value=2.5e-06  Score=83.54  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc-------cccc-------ccchHHHHHHhhhhcCcee
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG-------FNNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~-------~yfg-------v~gg~~~F~~~ve~~G~~~  333 (351)
                      .+.||+|++..++++......+++-+.++|+ |+|++++....       ..|.       ..-+...+.+.+++.|+ .
T Consensus       169 ~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf-~  246 (416)
T 4e2x_A          169 EGPANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGF-E  246 (416)
T ss_dssp             HCCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTE-E
T ss_pred             CCCEEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCC-E
Confidence            4789999999999999999999999999997 89999987421       0000       00156788899999996 4


Q ss_pred             eEEeee
Q 018716          334 AHLIKE  339 (351)
Q Consensus       334 ~~~v~e  339 (351)
                      ...+.+
T Consensus       247 ~~~~~~  252 (416)
T 4e2x_A          247 LVDVQR  252 (416)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            433444

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.46  E-value=2.7e-06  Score=82.43  Aligned_cols=133  Identities=11%  Similarity=0.111  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..++|||+|||+|...+.++.. ...++++.|+ +.+++.     .+.|....                 .+..+|++..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  235 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEM-----MRKQTAGL-----------------SGSERIHGHG  235 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHH-----HHHHHTTC-----------------TTGGGEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHH-----HHHHHHhc-----------------CcccceEEEE
Confidence            5689999999999999888763 2348999999 888743     33333210                 1224577766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+..                                                              .....+||+|+
T Consensus       236 ~d~~~~~--------------------------------------------------------------~~~p~~~D~v~  253 (363)
T 3dp7_A          236 ANLLDRD--------------------------------------------------------------VPFPTGFDAVW  253 (363)
T ss_dssp             CCCCSSS--------------------------------------------------------------CCCCCCCSEEE
T ss_pred             ccccccC--------------------------------------------------------------CCCCCCcCEEE
Confidence            6543210                                                              00125799999


Q ss_pred             EeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccc-----------------cc-------cccchHHHHHHhhhhc
Q 018716          276 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN-----------------YV-------GFNNAARHLRSLVDEE  329 (351)
Q Consensus       276 asDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~-----------------yf-------gv~gg~~~F~~~ve~~  329 (351)
                      +..++++-  +....+++-+.+.|+ |+|.+++.-.-.                 ++       +......++.+.+++.
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A  332 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA  332 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence            99999743  445677888888897 899988852100                 00       1111578899999999


Q ss_pred             CceeeE
Q 018716          330 GIFGAH  335 (351)
Q Consensus       330 G~~~~~  335 (351)
                      |+-..+
T Consensus       333 Gf~~v~  338 (363)
T 3dp7_A          333 GLEVEE  338 (363)
T ss_dssp             TEEESC
T ss_pred             CCeEEE
Confidence            964333

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.46  E-value=7.8e-07  Score=84.64  Aligned_cols=40  Identities=25%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC--CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga--~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..+.  .+|+++|+++++++.
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~  115 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI  115 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            4788999999999999988886542  469999999999854

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.44  E-value=2.1e-06  Score=86.34  Aligned_cols=51  Identities=16%  Similarity=0.171  Sum_probs=39.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhh--hHHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT--TVPNVLANLE  166 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~--t~~Nv~lN~~  166 (351)
                      .++.+|||||||+|..++.++. .|..+|++.|+++.+++..  ++..++.|+.
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~  294 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK  294 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHH
Confidence            4788999999999999998886 4666899999999988654  3333455543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.44  E-value=3.5e-06  Score=80.74  Aligned_cols=131  Identities=16%  Similarity=0.185  Sum_probs=86.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++.+|||+|||+|..++.++..+ ..+++.+|+ +.+++.     .+.|....                 .+..++++.
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  238 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDT-----ARSYLKDE-----------------GLSDRVDVV  238 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHH-----HHHHHHhc-----------------CCCCceEEE
Confidence            357899999999999998887653 348999999 878753     34444321                 123357776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+.+.                                                                 ...+||+|
T Consensus       239 ~~d~~~~-----------------------------------------------------------------~~~~~D~v  253 (360)
T 1tw3_A          239 EGDFFEP-----------------------------------------------------------------LPRKADAI  253 (360)
T ss_dssp             ECCTTSC-----------------------------------------------------------------CSSCEEEE
T ss_pred             eCCCCCC-----------------------------------------------------------------CCCCccEE
Confidence            6655320                                                                 01249999


Q ss_pred             EEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEecc-cc------------------c-cccchHHHHHHhhhhcCce
Q 018716          275 LLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKK-NY------------------V-GFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       275 LasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~-~y------------------f-gv~gg~~~F~~~ve~~G~~  332 (351)
                      +++.++++-..  ...+++-+.+.|+ |+|.+++..-. ..                  + |..-...++.+.+++.|+-
T Consensus       254 ~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  332 (360)
T 1tw3_A          254 ILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV  332 (360)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence            99999965443  3577888888897 89988876322 00                  0 1112567888999999964


Q ss_pred             eeE
Q 018716          333 GAH  335 (351)
Q Consensus       333 ~~~  335 (351)
                      ..+
T Consensus       333 ~~~  335 (360)
T 1tw3_A          333 VEE  335 (360)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.44  E-value=2.3e-06  Score=82.16  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcccCC-HHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtG-L~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+| +.++.+++ .|+ +|++.|+++++++.
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~  161 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAEL  161 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHH
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHH
Confidence            57899999999986 55566665 454 89999999999865

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.42  E-value=1.5e-06  Score=80.01  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++.. . ..+|++.|+++.+++.
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~  119 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL  119 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence            36789999999999999988863 2 3589999999999854

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.42  E-value=3.4e-06  Score=80.59  Aligned_cols=132  Identities=16%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  196 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~g  196 (351)
                      +.+|||+|||+|.....++.. ...++++.|+ +.+++.     .+.|....                 .+..++++..+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~~  236 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDA-----ARKTIHAH-----------------DLGGRVEFFEK  236 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHH-----HHHHHHHT-----------------TCGGGEEEEEC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHH-----HHHHHHhc-----------------CCCCceEEEeC
Confidence            789999999999999888764 3358999999 767743     33343321                 02235777776


Q ss_pred             cCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEEE
Q 018716          197 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  276 (351)
Q Consensus       197 dW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILa  276 (351)
                      |..+.+.                                                              ....+||+|++
T Consensus       237 d~~~~~~--------------------------------------------------------------~~~~~~D~v~~  254 (352)
T 3mcz_A          237 NLLDARN--------------------------------------------------------------FEGGAADVVML  254 (352)
T ss_dssp             CTTCGGG--------------------------------------------------------------GTTCCEEEEEE
T ss_pred             CcccCcc--------------------------------------------------------------cCCCCccEEEE
Confidence            6543210                                                              02346999999


Q ss_pred             eccccCcc--CHHHHHHHHHHHcCCCCeEEEEEecc-------c-------------c-ccccchHHHHHHhhhhcCcee
Q 018716          277 TEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKK-------N-------------Y-VGFNNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       277 sDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~-------~-------------y-fgv~gg~~~F~~~ve~~G~~~  333 (351)
                      ..++++-+  ....+++-+++.|+ |+|.+++...-       .             . -|...+..+|.+.+++.|+-.
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  333 (352)
T 3mcz_A          255 NDCLHYFDAREAREVIGHAAGLVK-PGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV  333 (352)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred             ecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCce
Confidence            99997544  45788888888897 89999886310       0             0 112235788999999999743


Q ss_pred             eE
Q 018716          334 AH  335 (351)
Q Consensus       334 ~~  335 (351)
                      .+
T Consensus       334 ~~  335 (352)
T 3mcz_A          334 GE  335 (352)
T ss_dssp             EE
T ss_pred             ee
Confidence            33

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.41  E-value=9.7e-07  Score=82.96  Aligned_cols=39  Identities=21%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||||||+|..++.++..+..+|++.|+++.+++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~  113 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMV  113 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            568999999999999998887676799999999999865

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.40  E-value=1.7e-06  Score=93.09  Aligned_cols=112  Identities=14%  Similarity=0.109  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC--CEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga--~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .++++|||+|||+|..++.++..+.  .+|++.|+++.+++.. +.++....  +..+             .. .++++|
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~A-ReRLa~~l--nAkr-------------~g-l~nVef  782 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA-AKMLHVKL--NKEA-------------CN-VKSATL  782 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHH-HHHHHHHT--TTTC-------------SS-CSEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHH-HHHhhhcc--chhh-------------cC-CCceEE
Confidence            3789999999999999999987762  5899999999998653 23332221  1000             01 136777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      +.+|..+.+                                                               ...+.||+
T Consensus       783 iqGDa~dLp---------------------------------------------------------------~~d~sFDl  799 (950)
T 3htx_A          783 YDGSILEFD---------------------------------------------------------------SRLHDVDI  799 (950)
T ss_dssp             EESCTTSCC---------------------------------------------------------------TTSCSCCE
T ss_pred             EECchHhCC---------------------------------------------------------------cccCCeeE
Confidence            776654421                                                               12468999


Q ss_pred             EEEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEec
Q 018716          274 ILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATK  309 (351)
Q Consensus       274 ILasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K  309 (351)
                      |++.+++.+...  ...+++.+.++|+ |+ .+++...
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTP  835 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTP  835 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEEC
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEec
Confidence            999999988765  3357888888997 66 6666653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.40  E-value=2.1e-06  Score=80.63  Aligned_cols=39  Identities=15%  Similarity=0.081  Sum_probs=34.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||||||+|..++.+++. +..+|++.|+++.+++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~  114 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEY  114 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHH
Confidence            5789999999999999988875 66799999999999865

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.37  E-value=4.9e-06  Score=75.38  Aligned_cols=138  Identities=13%  Similarity=0.132  Sum_probs=85.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ++++|||+|||+|..++.++.. + ..+|++.|+++.+++. ...|+..+.                     +..++++.
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~g---------------------~~~~i~~~  129 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAI-AKKYWQKAG---------------------VAEKISLR  129 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH-HHHHHHHHT---------------------CGGGEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEEE
Confidence            5789999999999999988863 2 3489999999998854 233433221                     12356766


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.   +.                    .+                                  ......+.||+|
T Consensus       130 ~~d~~~~---l~--------------------~l----------------------------------~~~~~~~~fD~V  152 (232)
T 3cbg_A          130 LGPALAT---LE--------------------QL----------------------------------TQGKPLPEFDLI  152 (232)
T ss_dssp             ESCHHHH---HH--------------------HH----------------------------------HTSSSCCCEEEE
T ss_pred             EcCHHHH---HH--------------------HH----------------------------------HhcCCCCCcCEE
Confidence            6554321   00                    00                                  000012679999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccc----c-----cccchHHHHHHhhhhcCceeeEEe
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----V-----GFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~y----f-----gv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      +..-   ....++.+++.+.++|+ |+|++++..-...    .     .....+++|.+.+.++.-+...++
T Consensus       153 ~~d~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  220 (232)
T 3cbg_A          153 FIDA---DKRNYPRYYEIGLNLLR-RGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVI  220 (232)
T ss_dssp             EECS---CGGGHHHHHHHHHHTEE-EEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred             EECC---CHHHHHHHHHHHHHHcC-CCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEE
Confidence            8532   24667888888888897 8999887521110    0     001246788888877654555543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.36  E-value=3.4e-06  Score=79.98  Aligned_cols=39  Identities=15%  Similarity=0.070  Sum_probs=34.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||||||+|..++.++.. +..+|++.|+++.+++.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~  129 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEA  129 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            4689999999999999998875 56799999999999865

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.35  E-value=8.6e-07  Score=79.14  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC------CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGA------GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga------~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++....      .+|+++|+++.+++.
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~  124 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNF  124 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHH
Confidence            4678999999999999988886432      489999999999865

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.35  E-value=4.5e-06  Score=76.44  Aligned_cols=39  Identities=10%  Similarity=0.097  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ++.+|||||||+|...+.++.. ...+|++.|+++.|++.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~   85 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDY   85 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence            5679999999999999988864 34589999999999865

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.35  E-value=1.6e-06  Score=79.46  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++.. +..+|++.|+++.+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~  124 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA  124 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence            36789999999999999888764 23489999999998853

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.35  E-value=2.7e-06  Score=79.31  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.  .+..+|++.|+++.+++.
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~  123 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKA  123 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHH
Confidence            4688999999999999988775  344699999999999864

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.34  E-value=1.9e-06  Score=80.41  Aligned_cols=63  Identities=13%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc-------c------cc-----ccchHHHHHHhhhhc
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-------Y------VG-----FNNAARHLRSLVDEE  329 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~-------y------fg-----v~gg~~~F~~~ve~~  329 (351)
                      .+.||+|+++.++++.+..+..++-+.++|+ |+|.++++....       +      ++     ..-...++.+.+++.
T Consensus       133 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  211 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  211 (292)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred             CCceeEEEEeeeeeecCCHHHHHHHHHHHcC-CCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence            5689999999999999999999999999998 999988863110       0      00     011456788888899


Q ss_pred             Cc
Q 018716          330 GI  331 (351)
Q Consensus       330 G~  331 (351)
                      |+
T Consensus       212 Gf  213 (292)
T 2aot_A          212 GL  213 (292)
T ss_dssp             TC
T ss_pred             CC
Confidence            96

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.34  E-value=6.3e-06  Score=78.66  Aligned_cols=46  Identities=24%  Similarity=0.258  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHhhhHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .++.+|||+|||+|..++.++.. |. .+|++.|+++.+++. .+.|+.
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~-a~~~~~  151 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL-AKKNYK  151 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH-HHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHHHH
Confidence            57899999999999999998875 54 689999999999865 234443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.34  E-value=4e-06  Score=83.78  Aligned_cols=47  Identities=28%  Similarity=0.365  Sum_probs=37.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++.+++. ...|+..|
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~-A~~n~~~n  335 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEM-ARRNVEIN  335 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHH-HHHHHHHc
Confidence            467899999999999999998765 489999999999865 34444443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.33  E-value=4.4e-06  Score=83.27  Aligned_cols=75  Identities=24%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716           98 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus        98 s~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      ...|.+.+.+..    ...++.+|||+|||+|..++.++.. ..+|++.|+++.+++. ...|+..|.            
T Consensus       271 ~e~l~~~~~~~l----~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~-A~~n~~~~~------------  332 (433)
T 1uwv_A          271 NQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEK-GQQNARLNG------------  332 (433)
T ss_dssp             HHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHH-HHHHHHHTT------------
T ss_pred             HHHHHHHHHHhh----cCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHH-HHHHHHHcC------------
Confidence            445666665543    1246789999999999999999877 4589999999999864 234443331            


Q ss_pred             CCCCCcccCCCCceeeeeccCCC
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEE  200 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~  200 (351)
                               +. +++|..+|+.+
T Consensus       333 ---------~~-~v~f~~~d~~~  345 (433)
T 1uwv_A          333 ---------LQ-NVTFYHENLEE  345 (433)
T ss_dssp             ---------CC-SEEEEECCTTS
T ss_pred             ---------CC-ceEEEECCHHH
Confidence                     12 58888888765

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.33  E-value=6.5e-07  Score=81.24  Aligned_cols=44  Identities=14%  Similarity=0.275  Sum_probs=35.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ...+|||||||+|..++..+..  ++ +|+++|+|+.|++. +..|+.
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~lei-ar~~~~   94 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAF-LSSIIG   94 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHH-HHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHH-HHHHHH
Confidence            4679999999999999998754  45 99999999999965 334443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.33  E-value=2.1e-06  Score=77.56  Aligned_cols=52  Identities=15%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++..+....    ...++.+|||+|||+|..++.++..+..+|++.|+++.+++.
T Consensus        78 ~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~  129 (235)
T 1jg1_A           78 HMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEF  129 (235)
T ss_dssp             HHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence            4455555443    234678999999999999988876432589999999998854

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.32  E-value=3.8e-06  Score=80.73  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=34.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||+|||+|..++.+++. +..+|++.|+++.+++.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~  155 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEV  155 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            5689999999999999988865 45699999999999864

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.31  E-value=4e-06  Score=80.14  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=34.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||||||+|..+..++.. +..+|++.|+++.+++.
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  116 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEV  116 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            5689999999999999988865 45699999999999865

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.31  E-value=1.8e-06  Score=77.02  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga-~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++.. |. .+|++.|+++.+++.
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~  117 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD  117 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence            46889999999999999888754 43 489999999999865

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.31  E-value=1.3e-06  Score=86.13  Aligned_cols=47  Identities=30%  Similarity=0.357  Sum_probs=40.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++.+|||+|||+|..|+.++.. ++.+|++.|+++.+++. .+.|+++|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~-a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYEL-MKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHHh
Confidence            6789999999999999998875 66689999999999865 46677666

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.31  E-value=2.7e-06  Score=76.30  Aligned_cols=48  Identities=21%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCC------CEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGA------GTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga------~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|..+..++. .+.      .+|++.|+++.+++. ...|+..+
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~  137 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR-SKANLNTD  137 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHH-HHHHHHhc
Confidence            4678999999999999988775 342      489999999999865 34555443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.31  E-value=5.6e-06  Score=80.23  Aligned_cols=45  Identities=11%  Similarity=0.047  Sum_probs=36.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ..++|||||||+|..++.+++. +..+|++.|+++.+++.. +.|+.
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~A-r~~~~  165 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS-KQFFP  165 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH-HHHCH
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHH-HHHHH
Confidence            5689999999999999998865 346999999999998653 34443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.30  E-value=1.3e-05  Score=74.10  Aligned_cols=64  Identities=17%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             CcccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716           91 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus        91 G~k~Weas~-~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      +.+.|+--. -|+..|..-+.. ...-+|.+|||||||+|.....++. .| ..+|++.|++++|++.
T Consensus        51 e~r~w~p~rsklaa~i~~gl~~-l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~  117 (233)
T 4df3_A           51 EYREWNAYRSKLAAALLKGLIE-LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD  117 (233)
T ss_dssp             EEEECCTTTCHHHHHHHTTCSC-CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH
T ss_pred             eeeeECCCchHHHHHHHhchhh-cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence            467887642 456666554321 2345899999999999999988885 34 3589999999999864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.29  E-value=5.4e-06  Score=75.83  Aligned_cols=39  Identities=18%  Similarity=0.028  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc----C-CCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK----G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~----G-a~~V~~TD~s~~vL~~  155 (351)
                      ++++|||||||+|..++.++..    + ..+|++.|+++.+++.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~  124 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI  124 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHH
Confidence            5679999999999999988764    2 3589999999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.28  E-value=1e-05  Score=77.19  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      .++.+|||+|||+|..++.++..  +..+|++.|+++.+++. ...|+..
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~-a~~~~~~  165 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRE-TRLNLSR  165 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHH-HHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHH-HHHHHHH
Confidence            46889999999999999888753  23589999999999865 2344443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.25  E-value=8.1e-06  Score=76.79  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=33.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ++++|||||||+|.....+++. +..+|++.|+++.+++.
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  117 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEV  117 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            5689999999999999988865 35699999999999864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.24  E-value=1.7e-05  Score=68.58  Aligned_cols=35  Identities=34%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC---------CEEEEEcCCh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GA---------GTVHFQDLSA  150 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga---------~~V~~TD~s~  150 (351)
                      .++.+|||+|||+|..++.++.. |.         .+|++.|+++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~   65 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH   65 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence            46889999999999999988864 54         6899999998

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.23  E-value=3.4e-05  Score=74.92  Aligned_cols=77  Identities=18%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             cEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccc------------------------cccccchHHHHHHh
Q 018716          272 DVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN------------------------YVGFNNAARHLRSL  325 (351)
Q Consensus       272 DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~------------------------yfgv~gg~~~F~~~  325 (351)
                      |+|++..++++-  +....+++-+++.|+ |+|++++.--..                        ..|......+|.+.
T Consensus       263 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~l  341 (368)
T 3reo_A          263 DAIFIKWICHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQAL  341 (368)
T ss_dssp             SEEEEESCGGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHH
T ss_pred             CEEEEechhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHH
Confidence            999999999843  445577888888897 899988862110                        01122357789999


Q ss_pred             hhhcCceeeEEeeecCCcceeeee
Q 018716          326 VDEEGIFGAHLIKEMTDRDIWKFF  349 (351)
Q Consensus       326 ve~~G~~~~~~v~e~~d~~i~~~~  349 (351)
                      +++.|+-.+++........|..++
T Consensus       342 l~~AGF~~v~~~~~~~~~~vie~~  365 (368)
T 3reo_A          342 AMASGFRGFKVASCAFNTYVMEFL  365 (368)
T ss_dssp             HHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             HHHCCCeeeEEEEeCCCcEEEEEE
Confidence            999998666665554444444433

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.20  E-value=4.7e-05  Score=69.15  Aligned_cols=45  Identities=9%  Similarity=-0.026  Sum_probs=35.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ++++|||+|||+|..++.++.. ...+|+++|+++.+++. .+.|+.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~-a~~~~~  110 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY-AKKNVE  110 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH-HHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHH
Confidence            5789999999999998877753 23589999999999865 234443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.19  E-value=1.3e-05  Score=80.46  Aligned_cols=61  Identities=15%  Similarity=0.060  Sum_probs=43.7

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHH
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ....+...+....    ...++.+|||||||+|-+.+.++. .|+.+|++.|+++.+++. ...|+.
T Consensus       157 t~~~~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lel-Ar~n~e  218 (438)
T 3uwp_A          157 TSFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY-AETMDR  218 (438)
T ss_dssp             THHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            3344444444442    234788999999999999998875 577679999999999865 344543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.17  E-value=1e-05  Score=78.82  Aligned_cols=59  Identities=19%  Similarity=0.207  Sum_probs=43.6

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..|..++....     ...+++|||+|||+|..++.++.. +.+|++.|+++.+++. .+.|+..|
T Consensus       200 ~~l~~~~~~~~-----~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~-a~~n~~~n  258 (369)
T 3bt7_A          200 IQMLEWALDVT-----KGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAA-AQYNIAAN  258 (369)
T ss_dssp             HHHHHHHHHHT-----TTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHHHh-----hcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence            45666665542     234689999999999999988874 5699999999999865 23444433

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.16  E-value=1.2e-05  Score=71.30  Aligned_cols=50  Identities=16%  Similarity=0.121  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCCh
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  150 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~  150 (351)
                      .++.-|.+.+.+.    ....++.+|||||||+|..+..++..+ .+|++.|+++
T Consensus         8 Ra~~KL~ei~~~~----~~~~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~   57 (191)
T 3dou_A            8 RAAFKLEFLLDRY----RVVRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQE   57 (191)
T ss_dssp             HHHHHHHHHHHHH----CCSCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSC
T ss_pred             cHHHHHHHHHHHc----CCCCCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccc
Confidence            3556666666554    233478999999999999999998774 5899999997

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.16  E-value=1.8e-05  Score=77.12  Aligned_cols=51  Identities=20%  Similarity=0.149  Sum_probs=39.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIR  154 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~  154 (351)
                      .++++|.+...    ..++.+|||+|||+|...+.++..  ...+|++.|+++.+++
T Consensus        26 ~l~~~~~~~~~----~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~   78 (421)
T 2ih2_A           26 EVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   78 (421)
T ss_dssp             HHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             HHHHHHHHhhc----cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            57777776642    135679999999999999988853  3468999999998764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.16  E-value=1.3e-05  Score=76.91  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=48.8

Q ss_pred             CccEEEEeccccCccCH--HHHHHHHHHHcCCCCeEEEEEeccc-------------------cccccchHHHHHHhhhh
Q 018716          270 GYDVILLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKN-------------------YVGFNNAARHLRSLVDE  328 (351)
Q Consensus       270 ~~DlILasDviY~~~~~--~~L~~~l~~~L~~p~gv~ylA~K~~-------------------yfgv~gg~~~F~~~ve~  328 (351)
                      +||+|++..++++-+.-  ..+++-+++.|+ |+|++++.....                   ..|......+|.+.+++
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~  325 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTA  325 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHH
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHH
Confidence            89999999999766554  578888888897 899998863110                   00112357889999999


Q ss_pred             cCceeeEEee
Q 018716          329 EGIFGAHLIK  338 (351)
Q Consensus       329 ~G~~~~~~v~  338 (351)
                      .|+-..++..
T Consensus       326 aGf~~~~~~~  335 (348)
T 3lst_A          326 AGLRLDRVVG  335 (348)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCceEEEEE
Confidence            9975555544

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.14  E-value=3e-06  Score=84.06  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=39.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      +|.+|||++||+|..|+.++.  .|+.+|++.|+++..++. +..|+++|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~-~~~N~~~N  100 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEI-MKENFKLN  100 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHH-HHHHHHHT
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHh
Confidence            578999999999999999887  366799999999999865 45666666

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.13  E-value=3.3e-06  Score=79.81  Aligned_cols=42  Identities=19%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             CCCccEEEEeccc-cCc-cCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          268 EGGYDVILLTEIP-YSV-TSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       268 ~~~~DlILasDvi-Y~~-~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      .++||+|++..++ |.. +....+++.+.+.|+ |+|..++....
T Consensus       211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~lg~sE  254 (274)
T 1af7_A          211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFAGHSE  254 (274)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEECTTC
T ss_pred             CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEEEecc
Confidence            3579999998874 444 445788888999997 99999987543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.13  E-value=3e-05  Score=67.50  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=36.9

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C--CCEEEEEcCCh
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G--AGTVHFQDLSA  150 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G--a~~V~~TD~s~  150 (351)
                      ++..|.+.+.+.    ....++.+|||||||+|..++.++.. +  ..+|++.|+++
T Consensus         6 ~~~kl~~~~~~~----~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A            6 AAYKLIELDNKY----LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             THHHHHHHHHHH----CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHHHHHHHc----CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            455566655443    12346789999999999999988864 3  35899999998

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.13  E-value=4.2e-06  Score=79.87  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+++|||||||+|..++.++.. +..+|++.|+++.+++.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  134 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQV  134 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            35689999999999999998875 35699999999999865

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.12  E-value=2.9e-05  Score=71.68  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      .++..|...+.. ....+|.+|||+|||+|..+..++. .| ..+|++.|+++.+++.
T Consensus        60 kla~~ll~~l~~-~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~  116 (232)
T 3id6_C           60 KLAGAILKGLKT-NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE  116 (232)
T ss_dssp             HHHHHHHTTCSC-CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH
T ss_pred             HHHHHHHhhhhh-cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence            456666554321 1235789999999999998887774 33 4589999999998754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.07  E-value=9.3e-05  Score=70.93  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             CccEEEEeccccCccCHH--HHHHHHHHHcCCC---CeEEEEEeccc--------------cc--------cccchHHHH
Q 018716          270 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPP---YGVVYLATKKN--------------YV--------GFNNAARHL  322 (351)
Q Consensus       270 ~~DlILasDviY~~~~~~--~L~~~l~~~L~~p---~gv~ylA~K~~--------------yf--------gv~gg~~~F  322 (351)
                      .||+|++..++++-..-.  .+++-+++.|+ |   +|++++.--..              .+        |...+..+|
T Consensus       246 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~  324 (352)
T 1fp2_A          246 NADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEW  324 (352)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHH
T ss_pred             CccEEEeehhhccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHH
Confidence            399999999998766555  78888888897 7   89888762110              00        111246788


Q ss_pred             HHhhhhcCceeeEEee
Q 018716          323 RSLVDEEGIFGAHLIK  338 (351)
Q Consensus       323 ~~~ve~~G~~~~~~v~  338 (351)
                      .+.+++.|+-..++..
T Consensus       325 ~~ll~~aGf~~~~~~~  340 (352)
T 1fp2_A          325 KKLFIEAGFQHYKISP  340 (352)
T ss_dssp             HHHHHHTTCCEEEEEE
T ss_pred             HHHHHHCCCCeeEEEe
Confidence            8999999974444433

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.06  E-value=0.00012  Score=71.08  Aligned_cols=69  Identities=20%  Similarity=0.110  Sum_probs=47.7

Q ss_pred             cEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccc------------------------cccccchHHHHHHh
Q 018716          272 DVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN------------------------YVGFNNAARHLRSL  325 (351)
Q Consensus       272 DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~------------------------yfgv~gg~~~F~~~  325 (351)
                      |+|+++.++++-  +....+++-+++.|+ |+|.+++.--..                        ..|...+..+|.+.
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  339 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDALP-AHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQAL  339 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHH
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHH
Confidence            999999999844  456677888888897 899988852110                        01112357789999


Q ss_pred             hhhcCceeeEEeeecC
Q 018716          326 VDEEGIFGAHLIKEMT  341 (351)
Q Consensus       326 ve~~G~~~~~~v~e~~  341 (351)
                      +++.|+-.+++..-..
T Consensus       340 l~~AGF~~v~~~~~~~  355 (364)
T 3p9c_A          340 ARGAGFTGVKSTYIYA  355 (364)
T ss_dssp             HHHTTCCEEEEEEEET
T ss_pred             HHHCCCceEEEEEcCC
Confidence            9999986666554433

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.05  E-value=3.4e-06  Score=81.01  Aligned_cols=39  Identities=21%  Similarity=0.101  Sum_probs=33.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++|||||||+|..++.+++. +..+|++.|+++.+++.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  147 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDV  147 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            4689999999999999988865 35699999999999864

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.05  E-value=3.9e-05  Score=71.72  Aligned_cols=114  Identities=13%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             CCCEEEEEcccC---CHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 018716          117 RGKRVLELSCGY---GLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  192 (351)
Q Consensus       117 ~~krVLELGcGt---GL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~  192 (351)
                      ...+|||||||+   |.....+... ...+|++.|+++.|++..     +.++.                    ...+++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~A-----r~~~~--------------------~~~~v~  131 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHG-----RALLA--------------------KDPNTA  131 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHH-----HHHHT--------------------TCTTEE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHH-----HHhcC--------------------CCCCeE
Confidence            347999999999   9876655543 234899999999998542     22221                    013577


Q ss_pred             eeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCcc
Q 018716          193 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  272 (351)
Q Consensus       193 ~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~D  272 (351)
                      +..+|..+.+.++..-                                                ..    .......+||
T Consensus       132 ~~~~D~~~~~~~~~~~------------------------------------------------~~----~~~~d~~~~d  159 (274)
T 2qe6_A          132 VFTADVRDPEYILNHP------------------------------------------------DV----RRMIDFSRPA  159 (274)
T ss_dssp             EEECCTTCHHHHHHSH------------------------------------------------HH----HHHCCTTSCC
T ss_pred             EEEeeCCCchhhhccc------------------------------------------------hh----hccCCCCCCE
Confidence            8777765532211000                                                00    0001224799


Q ss_pred             EEEEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEe
Q 018716          273 VILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       273 lILasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +|++.-++++-+.  ...+++.+.+.|+ |+|.+++..
T Consensus       160 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~  196 (274)
T 2qe6_A          160 AIMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTS  196 (274)
T ss_dssp             EEEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             EEEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence            9999999987554  8889999999997 899988874

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.04  E-value=1.7e-05  Score=74.70  Aligned_cols=51  Identities=18%  Similarity=0.078  Sum_probs=39.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++.+.+..    ...++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus        15 ~i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~   65 (285)
T 1zq9_A           15 LIINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAE   65 (285)
T ss_dssp             HHHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHH
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHH
Confidence            3455555542    224678999999999999999887765 89999999998854

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.00  E-value=2.1e-05  Score=75.57  Aligned_cols=45  Identities=11%  Similarity=-0.007  Sum_probs=34.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC------CEEEEEcCChHHHHhhhHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGA------GTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga------~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      ++.+|||+|||+|...+.++....      .+++++|+++.+++.+ ..|+.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a-~~n~~  180 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA-LVGAD  180 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH-HHHHH
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH-HHHHH
Confidence            567999999999999988875321      5899999999998653 34443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.99  E-value=9e-05  Score=74.13  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++. .+ ..+|++.|+++.+++.
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~  299 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKR  299 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence            4678999999999999988775 23 2589999999998854

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.98  E-value=1.2e-05  Score=77.82  Aligned_cols=37  Identities=19%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             CEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          119 KRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+||+||||+|.....+++ ....+|++.|+++.|++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~  128 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARL  128 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHH
Confidence            4999999999999988886 433489999999999864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.97  E-value=4.1e-05  Score=71.50  Aligned_cols=38  Identities=11%  Similarity=-0.105  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||||||+|.....++..+ .+|++.|+++.|++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~  109 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDS  109 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGG
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHH
Confidence            46899999999999988777666 799999999999865

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.97  E-value=8.6e-06  Score=74.01  Aligned_cols=38  Identities=11%  Similarity=-0.055  Sum_probs=30.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCC-hHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLS-AETIR  154 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s-~~vL~  154 (351)
                      ++.+|||||||+|...+.++.. ...+|++.|++ +.|++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~   63 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFD   63 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHH
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            6789999999999999888742 33589999999 66653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.96  E-value=5.7e-05  Score=73.06  Aligned_cols=66  Identities=17%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             ccEEEEeccccCccCHH--HHHHHHHHHcCCCCeEEEEEe---ccc-----------cc---------cccchHHHHHHh
Q 018716          271 YDVILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLAT---KKN-----------YV---------GFNNAARHLRSL  325 (351)
Q Consensus       271 ~DlILasDviY~~~~~~--~L~~~l~~~L~~p~gv~ylA~---K~~-----------yf---------gv~gg~~~F~~~  325 (351)
                      ||+|++..++++-+.-.  .+++-+.+.|+ |+|++++.-   ...           .+         |...+..+|.+.
T Consensus       268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l  346 (372)
T 1fp1_D          268 GDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKL  346 (372)
T ss_dssp             EEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHH
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHH
Confidence            89999999998766554  78888888897 899988762   100           00         112256788899


Q ss_pred             hhhcCceeeEEe
Q 018716          326 VDEEGIFGAHLI  337 (351)
Q Consensus       326 ve~~G~~~~~~v  337 (351)
                      +++.|+-..++.
T Consensus       347 l~~aGf~~~~~~  358 (372)
T 1fp1_D          347 SKLSGFSKFQVA  358 (372)
T ss_dssp             HHHTTCSEEEEE
T ss_pred             HHHCCCceEEEE
Confidence            999997444443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.96  E-value=1.2e-05  Score=80.38  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             CCCCEEEEEccc------CCHHHHHHHHc--CCCEEEEEcCChHH
Q 018716          116 FRGKRVLELSCG------YGLPGIFACLK--GAGTVHFQDLSAET  152 (351)
Q Consensus       116 ~~~krVLELGcG------tGL~gl~aa~~--Ga~~V~~TD~s~~v  152 (351)
                      .++.+|||||||      +|..++.++..  ...+|++.|+++.|
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m  259 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS  259 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            467899999999      66667666542  34589999999976

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.94  E-value=0.00015  Score=69.92  Aligned_cols=131  Identities=14%  Similarity=0.113  Sum_probs=85.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..++|+|+|||+|...+.++.. ...++++.|. |.+++.     .+.+...                  ....+|+|..
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~-----a~~~~~~------------------~~~~rv~~~~  234 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWT-----AKQHFSF------------------QEEEQIDFQE  234 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHH-----HHHHSCC--------------------CCSEEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHH-----HHHhhhh------------------cccCceeeec
Confidence            4579999999999999888764 3447888997 556532     2222210                  0134677766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|.-+.                                                                 ...++|+|+
T Consensus       235 gD~~~~-----------------------------------------------------------------~~~~~D~~~  249 (353)
T 4a6d_A          235 GDFFKD-----------------------------------------------------------------PLPEADLYI  249 (353)
T ss_dssp             SCTTTS-----------------------------------------------------------------CCCCCSEEE
T ss_pred             CccccC-----------------------------------------------------------------CCCCceEEE
Confidence            653210                                                                 123579999


Q ss_pred             EeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEeccc-----------cc---------cccchHHHHHHhhhhcCcee
Q 018716          276 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN-----------YV---------GFNNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       276 asDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~~-----------yf---------gv~gg~~~F~~~ve~~G~~~  333 (351)
                      ...++++-+  ....+++-+.+.|+ |+|.++|.---.           ++         |...+..+|.+++++.|+=.
T Consensus       250 ~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          250 LARVLHDWADGKCSHLLERIYHTCK-PGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred             eeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            999998643  34567777888886 899998863110           01         12235788999999999755


Q ss_pred             eEEe
Q 018716          334 AHLI  337 (351)
Q Consensus       334 ~~~v  337 (351)
                      +++.
T Consensus       329 v~v~  332 (353)
T 4a6d_A          329 FQFK  332 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.93  E-value=1.7e-05  Score=75.13  Aligned_cols=47  Identities=13%  Similarity=0.058  Sum_probs=37.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ...+|||||||+|.+++.++.. +..+|++.|+|+.+++. +..|+..|
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~-a~~~l~~~  179 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGF-VDEALTRL  179 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHH-HHHHHHHT
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHH-HHHHHHhc
Confidence            3569999999999999988764 56799999999999965 44555444

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.93  E-value=5.8e-05  Score=70.68  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ....+|||||||+|.+++...  +..+|+++|+++.+++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~  141 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDV  141 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHH
Confidence            357799999999999999887  66799999999999865

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.90  E-value=0.00017  Score=71.47  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..+ ..+|++.|+++.+++.
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~  285 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSR  285 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHH
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            468899999999999998887643 2589999999998854

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.90  E-value=0.00025  Score=68.05  Aligned_cols=68  Identities=15%  Similarity=0.141  Sum_probs=46.9

Q ss_pred             CccEEEEeccccCccCHH--HHHHHHHHHcCCC---CeEEEEEeccc--------------cc---------cccchHHH
Q 018716          270 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPP---YGVVYLATKKN--------------YV---------GFNNAARH  321 (351)
Q Consensus       270 ~~DlILasDviY~~~~~~--~L~~~l~~~L~~p---~gv~ylA~K~~--------------yf---------gv~gg~~~  321 (351)
                      .||+|++..++++-+.-.  .+++-+++.|+ |   +|.+++..-..              .+         |...+..+
T Consensus       251 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e  329 (358)
T 1zg3_A          251 SADAVLLKWVLHDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQE  329 (358)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHH
T ss_pred             CceEEEEcccccCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHH
Confidence            489999999998766544  88888888897 7   89888852110              00         11125678


Q ss_pred             HHHhhhhcCceeeEEee
Q 018716          322 LRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       322 F~~~ve~~G~~~~~~v~  338 (351)
                      |.+.+++.|+-..++..
T Consensus       330 ~~~ll~~aGf~~~~~~~  346 (358)
T 1zg3_A          330 WEKLIYDAGFSSYKITP  346 (358)
T ss_dssp             HHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHcCCCeeEEEe
Confidence            88999999974444433

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.85  E-value=0.00011  Score=70.14  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=33.1

Q ss_pred             CHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEe
Q 018716          285 SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       285 ~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      .++.+++.+.+.|+ |+|.+++..-..     +...++.+.+++.|+..++.+
T Consensus       149 l~~~~l~~a~r~Lk-pGG~~v~~~~~~-----~~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          149 FFTYLCGFIKQKLA-LGGSIAVKITEH-----SWNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHHHHHHHHHHEE-EEEEEEEEECSS-----SCCHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcC-CCcEEEEEEecc-----CCHHHHHHHHHHcCCcEEEEE
Confidence            35678888888997 899988854221     234688888988886555554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.83  E-value=3.4e-05  Score=77.91  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=37.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-c-CCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||+|..++.++. . +..+|++.|+++.+++. ...|+.++
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~-~~~n~~r~  153 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKI-LSENIERW  153 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHH-HHHHHHHH
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            4688999999999999988774 2 34589999999999865 34555443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.83  E-value=3.1e-05  Score=81.29  Aligned_cols=63  Identities=10%  Similarity=0.042  Sum_probs=41.7

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC---CC--EEEEEcCChHHHHhhhHHHHHHHH
Q 018716          101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG---AG--TVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G---a~--~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      ..+.|.+...+....++++.||++|||+|.+..+++..|   +.  +|++.+.|+...  +++.+++.|.
T Consensus       341 I~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~--~a~~~v~~N~  408 (637)
T 4gqb_A          341 IYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV--VTLENWQFEE  408 (637)
T ss_dssp             HHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH--HHHHHHHHHT
T ss_pred             HHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHHHHhcc
Confidence            334444332222345677899999999999976665433   33  689999998544  4567777774

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.82  E-value=9.6e-05  Score=72.75  Aligned_cols=61  Identities=21%  Similarity=0.118  Sum_probs=44.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  140 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga--------------------------------------  140 (351)
                      ..|+..|....    ...++.+|||.+||+|...+.++..+.                                      
T Consensus       181 e~lAa~ll~~~----~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          181 ETLAAGLIYLT----PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             HHHHHHHHHTS----CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHhh----CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            35777776552    224678999999999999998876432                                      


Q ss_pred             -CEEEEEcCChHHHHhhhHHHHHHH
Q 018716          141 -GTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       141 -~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                       .+|++.|+++.+++. .+.|+..|
T Consensus       257 ~~~V~GvDid~~ai~~-Ar~Na~~~  280 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDI-ARENAEIA  280 (385)
T ss_dssp             CCCEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CceEEEEECCHHHHHH-HHHHHHHc
Confidence             369999999999965 34555544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.81  E-value=0.00012  Score=74.21  Aligned_cols=46  Identities=24%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .++.+|||+|||+|..++.++..  +..+|++.|+++.+++. ...|+.
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~-a~~n~~  147 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRG-LLENVE  147 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH-HHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHH
Confidence            37889999999999999888743  33589999999999865 234444

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.81  E-value=0.00012  Score=72.48  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  140 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga--------------------------------------  140 (351)
                      ..|+..|....    ...++.+|||.+||+|-..+.++..+.                                      
T Consensus       187 e~lAa~ll~l~----~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          187 ETMAAALVLLT----SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             HHHHHHHHHHS----CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHh----CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            35677666542    224678999999999999998886432                                      


Q ss_pred             -CEEEEEcCChHHHHhhhHHHHH
Q 018716          141 -GTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       141 -~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                       .+|++.|+++.+++. .+.|+.
T Consensus       263 ~~~V~GvDid~~al~~-Ar~Na~  284 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEI-AKQNAV  284 (393)
T ss_dssp             CCCEEEEESCHHHHHH-HHHHHH
T ss_pred             CceEEEEECCHHHHHH-HHHHHH
Confidence             259999999999965 334444

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.80  E-value=7.6e-05  Score=70.72  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~   79 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISE   79 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHH
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHH
Confidence            467899999999999999988765 489999999999854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.80  E-value=0.00021  Score=65.62  Aligned_cols=51  Identities=10%  Similarity=0.105  Sum_probs=40.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++.+.+..    ...++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        17 ~~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~   67 (244)
T 1qam_A           17 HNIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT   67 (244)
T ss_dssp             HHHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHH
T ss_pred             HHHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHH
Confidence            4555555542    22467899999999999999998776 589999999998854

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.79  E-value=0.00014  Score=73.65  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      ++.+|||+|||+|..++.++.. + ..+|++.|+++.+++. ...|+..
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~-~~~n~~r  164 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKV-LHANISR  164 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHH-HHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHH
Confidence            6889999999999999887753 2 3589999999999865 3444443

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.78  E-value=5.1e-05  Score=72.44  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcC
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL  148 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~  148 (351)
                      .++..|...+...     ...++++|||||||+|..+..++..  .+|++.|+
T Consensus        66 R~a~KL~~i~~~~-----~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~  111 (305)
T 2p41_A           66 RGSAKLRWFVERN-----LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKG  111 (305)
T ss_dssp             THHHHHHHHHHTT-----SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEE
T ss_pred             cHHHHHHHHHHcC-----CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEec
Confidence            4566666655442     2346889999999999999998876  37999998

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.77  E-value=0.00013  Score=69.49  Aligned_cols=51  Identities=16%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++.|.+..    ...++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        37 ~i~~~Iv~~l----~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~   87 (295)
T 3gru_A           37 NFVNKAVESA----NLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPY   87 (295)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHH
T ss_pred             HHHHHHHHhc----CCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHH
Confidence            3445555442    23468899999999999999988775 589999999999854

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.73  E-value=7.9e-05  Score=63.76  Aligned_cols=63  Identities=25%  Similarity=0.351  Sum_probs=47.8

Q ss_pred             CCCccEEEEeccccCc-cCHHHHHHHHHHHcCCCCeEEEEEeccccc----cccchHHHHHHhhhhcCc
Q 018716          268 EGGYDVILLTEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKNYV----GFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       268 ~~~~DlILasDviY~~-~~~~~L~~~l~~~L~~p~gv~ylA~K~~yf----gv~gg~~~F~~~ve~~G~  331 (351)
                      .+.||+|+++.++... ...+.+++-+.++|+ |+|.+++.......    .......++.+.+++.|+
T Consensus        61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           61 ESSFDIILSGLVPGSTTLHSAEILAEIARILR-PGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEE-EEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CCCEeEEEECChhhhcccCHHHHHHHHHHHCC-CCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            5689999999999887 677889999999997 89999985331100    001246788999999998

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.71  E-value=0.00031  Score=69.24  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  140 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga--------------------------------------  140 (351)
                      ..|+..|....    ...++..|||.+||+|-..|.++..+.                                      
T Consensus       180 e~LAaall~l~----~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          180 ENMAAAIILLS----NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             HHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHh----CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            46777766552    224678999999999999998886432                                      


Q ss_pred             -CEEEEEcCChHHHHhhhHHHHH
Q 018716          141 -GTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       141 -~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                       .+|++.|+++.+++. .+.|+.
T Consensus       256 ~~~v~GvDid~~al~~-Ar~Na~  277 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEI-ARKNAR  277 (384)
T ss_dssp             CCCEEEEESCHHHHHH-HHHHHH
T ss_pred             CceEEEEECCHHHHHH-HHHHHH
Confidence             259999999999965 334443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.56  E-value=0.00067  Score=63.85  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++ +|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~   83 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPV   83 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHH
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHH
Confidence            357 99999999999999998877 489999999999854

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.49  E-value=0.00013  Score=68.04  Aligned_cols=47  Identities=19%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCCh-------HHHHhhhHHHHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA-------ETIRCTTVPNVLANL  165 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~-------~vL~~~t~~Nv~lN~  165 (351)
                      ++.+|||+|||+|..++.++..|. +|++.|+++       ++++. ...|+..|.
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~-a~~n~~~~~  136 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRR-ALLNPETQD  136 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHH-HHHSHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHH-HHhHHHhhC
Confidence            568999999999999999998775 899999999       76654 245555543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.44  E-value=0.0002  Score=62.15  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHH-cCCCEEEEEcCChHHH
Q 018716           90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACL-KGAGTVHFQDLSAETI  153 (351)
Q Consensus        90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL-~gl~aa~-~Ga~~V~~TD~s~~vL  153 (351)
                      -+.|+|+   .|++||.+..      ..+.+|||+|||.|. ++..++. .|. .|++||+++..+
T Consensus        17 ~~~~m~e---~LaeYI~~~~------~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av   72 (153)
T 2k4m_A           17 RGSHMWN---DLAVYIIRCS------GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG   72 (153)
T ss_dssp             CCCHHHH---HHHHHHHHHS------CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST
T ss_pred             chhhHHH---HHHHHHHhcC------CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc
Confidence            4567876   6999998773      245799999999995 9999886 776 799999998644

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.42  E-value=0.00044  Score=65.07  Aligned_cols=50  Identities=16%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHH
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAET  152 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~v  152 (351)
                      -.++..|...+...     ...++++|||||||+|..+..++..  .+|++.|+++ |
T Consensus        65 sR~a~KL~~i~~~~-----~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m  114 (276)
T 2wa2_A           65 SRGTAKLAWIDERG-----GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-L  114 (276)
T ss_dssp             CHHHHHHHHHHHTT-----SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-C
T ss_pred             chHHHHHHHHHHcC-----CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-h
Confidence            34555565555431     3347889999999999999988876  4799999998 5

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.41  E-value=0.00043  Score=64.43  Aligned_cols=39  Identities=8%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~   66 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAF   66 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHH
T ss_pred             CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence            467899999999999999998776 589999999999854

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.40  E-value=0.00057  Score=63.88  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=37.1

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCCh
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  150 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~  150 (351)
                      .++..|...+...     ...++++|||||||+|..+..++..  .+|++.|+++
T Consensus        58 R~a~KL~~i~~~~-----~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~  105 (265)
T 2oxt_A           58 RGTAKLAWMEERG-----YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT  105 (265)
T ss_dssp             THHHHHHHHHHHT-----SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC
T ss_pred             hHHHHHHHHHHcC-----CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch
Confidence            4555666555442     3346889999999999999988876  4799999998

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.35  E-value=0.0011  Score=66.03  Aligned_cols=52  Identities=19%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--------------CCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--------------GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~--------------Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|.+.+.    ...+.+|||.|||+|...+.++..              ...++++.|+++.+++.
T Consensus       158 ~v~~~mv~~l~----~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~l  223 (445)
T 2okc_A          158 PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  223 (445)
T ss_dssp             HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHH
Confidence            45666655431    245779999999999998887642              12479999999999865

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.30  E-value=0.0003  Score=65.14  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=42.7

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.  .+++.+.+..    ...++.+|||+|||+|..+..++..|+.+|++.|+++.+++.
T Consensus        14 l~d~--~i~~~iv~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~   69 (249)
T 3ftd_A           14 LVSE--GVLKKIAEEL----NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVEN   69 (249)
T ss_dssp             EECH--HHHHHHHHHT----TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHH
T ss_pred             cCCH--HHHHHHHHhc----CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            4554  3455555542    224688999999999999999988776799999999998854

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.20  E-value=0.00047  Score=68.76  Aligned_cols=59  Identities=19%  Similarity=0.150  Sum_probs=45.4

Q ss_pred             hHHHHHHHHhhhhhcCCCCC-CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           97 SSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~-~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ++...+.|-...       + .|++|||||||+|..+++++..+. +|++.|+++.+++. ...|+..|
T Consensus        79 t~e~vA~~~a~~-------l~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~-Ar~N~~~~  138 (410)
T 3ll7_A           79 SGAVTSSYKSRF-------IREGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVA-ARHNIPLL  138 (410)
T ss_dssp             CCHHHHHHGGGG-------SCTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CHHHHHHHHHHh-------cCCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHH-HHHhHHHh
Confidence            345566664433       3 389999999999999999887764 99999999999965 45676655

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.11  E-value=0.0018  Score=68.46  Aligned_cols=60  Identities=20%  Similarity=0.116  Sum_probs=43.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC---------------------------------------
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG---------------------------------------  139 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G---------------------------------------  139 (351)
                      ..|+..|....    ...++.+|||.+||+|-..|.++..+                                       
T Consensus       176 e~LAa~ll~~~----~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          176 ETLAAAIVMRS----GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             HHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh----CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            46777776652    22367899999999999999887532                                       


Q ss_pred             ----CCEEEEEcCChHHHHhhhHHHHHH
Q 018716          140 ----AGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       140 ----a~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                          ..+|++.|+++.+++. .+.|+..
T Consensus       252 ~~~~~~~i~G~Did~~av~~-A~~N~~~  278 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQR-ARTNARL  278 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHH-HHHHHHH
T ss_pred             cccCCccEEEEECCHHHHHH-HHHHHHH
Confidence                1379999999999965 3444443

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.06  E-value=0.0055  Score=58.48  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~  155 (351)
                      .+|.+|||+|||+|..++.++..  +..+|++.|+++.+++.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~  142 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS  142 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            46889999999999999887752  34689999999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.97  E-value=0.00073  Score=63.74  Aligned_cols=51  Identities=22%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC---EEEEEcCChHHHHh
Q 018716          101 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG---TVHFQDLSAETIRC  155 (351)
Q Consensus       101 L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~---~V~~TD~s~~vL~~  155 (351)
                      +++.+.+..    ...++.+|||+|||+|..+..++..+..   +|++.|+++.+++.
T Consensus        30 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~   83 (279)
T 3uzu_A           30 VIDAIVAAI----RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGR   83 (279)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHH
T ss_pred             HHHHHHHhc----CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHH
Confidence            444455443    2246789999999999999998876542   29999999999865

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.84  E-value=0.0015  Score=69.26  Aligned_cols=37  Identities=14%  Similarity=0.061  Sum_probs=28.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHH----cC----------CCEEEEEcCChHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACL----KG----------AGTVHFQDLSAETI  153 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~----~G----------a~~V~~TD~s~~vL  153 (351)
                      +++.||++|||+|.++.+++.    .|          +.+|++.|.|+..+
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~  459 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI  459 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH
Confidence            357899999999999865432    12          34999999998665

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.81  E-value=0.0015  Score=60.63  Aligned_cols=37  Identities=11%  Similarity=0.105  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCE--EEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGT--VHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~--V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+. +.. + .+  |++.|+++.|++.
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~   58 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAAR   58 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHH
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHH
Confidence            467899999999999999 654 3 36  9999999999854

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.74  E-value=0.042  Score=56.43  Aligned_cols=62  Identities=15%  Similarity=0.065  Sum_probs=41.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc----CCCEEEEEcCChHHHHhhhHHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~----Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .++++|.+.+........+.+|+|.+||+|...+.++..    +..+++++|+++.+++.+ +-|+.
T Consensus       204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA-~~Nl~  269 (542)
T 3lkd_A          204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLA-RMNMI  269 (542)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHH-HHHHH
Confidence            345555554321111246789999999999887776642    345899999999998653 34443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=96.74  E-value=0.0021  Score=61.32  Aligned_cols=40  Identities=18%  Similarity=0.089  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..++.++.. +..+|++.|+++.+++.
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~   65 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRI   65 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            36789999999999999988865 24589999999999854

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.65  E-value=0.022  Score=53.92  Aligned_cols=53  Identities=19%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAE  151 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~  151 (351)
                      .-.++.-|.+.....     ...++.+|||||||.|--+-+++.. ++..|++.|+..+
T Consensus        56 rSRaA~KL~ei~ek~-----~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD  109 (277)
T 3evf_A           56 VSRGTAKLRWFHERG-----YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD  109 (277)
T ss_dssp             SSTHHHHHHHHHHTT-----SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             cccHHHHHHHHHHhC-----CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc
Confidence            456888888888763     2346779999999999999988764 6778888888753

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.63  E-value=0.014  Score=55.15  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=27.2

Q ss_pred             CEEEEEcccC---CHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          119 KRVLELSCGY---GLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       119 krVLELGcGt---GL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+|||||||+   |.....+.. ....+|+..|.|+.||+.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~  120 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTL  120 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHH
Confidence            6899999996   444433332 334589999999999864

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.63  E-value=0.065  Score=48.28  Aligned_cols=43  Identities=14%  Similarity=0.044  Sum_probs=31.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      +.++|||+|||  .-++.+++....+|+..|.+++..+. .+.|+.
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~-ar~~l~   72 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARM-MKAWLA   72 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHH-HHHHHH
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            46899999985  56677776423589999999988754 334444

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.47  E-value=0.00077  Score=61.35  Aligned_cols=39  Identities=15%  Similarity=0.070  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~   66 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNL   66 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHH
Confidence            467899999999999999988776 589999999988743

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.41  E-value=0.0062  Score=57.25  Aligned_cols=50  Identities=26%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .|++.+....     ..+|..|||++||+|..+++++..|. ++++.|+++++++.
T Consensus       223 ~l~~~~i~~~-----~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~  272 (297)
T 2zig_A          223 ELAERLVRMF-----SFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQL  272 (297)
T ss_dssp             HHHHHHHHHH-----CCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            4555555442     25788999999999999999999886 89999999998854

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.37  E-value=0.013  Score=60.11  Aligned_cols=52  Identities=17%  Similarity=0.005  Sum_probs=37.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc----C---------------CCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G---------------AGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~----G---------------a~~V~~TD~s~~vL~~  155 (351)
                      .++++|.+.+.    ...+.+|+|.+||+|...+.++..    +               ..++++.|+++.+++.
T Consensus       156 ~iv~~mv~~l~----p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l  226 (541)
T 2ar0_A          156 PLIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  226 (541)
T ss_dssp             HHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhc----cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence            34555554431    235789999999999988877631    1               1379999999999865

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.33  E-value=0.016  Score=55.19  Aligned_cols=40  Identities=15%  Similarity=0.154  Sum_probs=33.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      ..++||-||-|.|...-.+++. +..+|++.|+++.|++.+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a  123 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFC  123 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHH
Confidence            5689999999999888777764 567999999999998753

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.33  E-value=0.037  Score=56.79  Aligned_cols=51  Identities=16%  Similarity=0.009  Sum_probs=35.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--------C--------CCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--------G--------AGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~--------G--------a~~V~~TD~s~~vL~~  155 (351)
                      .++++|.+.+.     ....+|+|.+||+|...+.++..        +        ..+++++|+++.+++.
T Consensus       232 ~Vv~lmv~ll~-----p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l  298 (544)
T 3khk_A          232 SIVTLIVEMLE-----PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL  298 (544)
T ss_dssp             HHHHHHHHHHC-----CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred             HHHHHHHHHHh-----cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence            45556655431     12239999999999877766421        1        2479999999999865

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.22  E-value=0.034  Score=59.91  Aligned_cols=40  Identities=8%  Similarity=0.022  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C---CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-G---AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-G---a~~V~~TD~s~~vL~~  155 (351)
                      ..+.+|||.|||+|...+.++.. +   ..+++++|+++.+++.
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~L  363 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLEL  363 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHH
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHH
Confidence            36789999999999998888753 2   2479999999998864

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=95.86  E-value=0.0085  Score=55.92  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=35.3

Q ss_pred             CEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHH
Q 018716          119 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  162 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~  162 (351)
                      .+|||+|||+|..++.++..|+ +|++.|.++.+.+. ...|+.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l-~~~~l~  131 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAAL-LDDGLA  131 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHH-HHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHH-HHHHHH
Confidence            8999999999999999998776 79999999987754 345554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.50  E-value=0.12  Score=50.98  Aligned_cols=34  Identities=15%  Similarity=-0.059  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCCh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  150 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~  150 (351)
                      -+|++||||||..|.-+-.++..|. +|++.|..+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~  243 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP  243 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh
Confidence            5799999999999999988888876 899999765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.27  E-value=0.032  Score=51.35  Aligned_cols=59  Identities=22%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..|++.+....     ..+|..|||..||+|-.+++|...|. ++++.|+++..++. ++.|+..|
T Consensus       199 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~-~~~r~~~~  257 (260)
T 1g60_A          199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQ-ANFVLNQL  257 (260)
T ss_dssp             HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-HHHHHHC-
T ss_pred             HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHH-HHHHHHhc
Confidence            45666555442     35788999999999999999999885 89999999988754 45555543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=94.70  E-value=0.16  Score=47.02  Aligned_cols=59  Identities=19%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CCccEEEEeccccCccC-----HHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEeeec
Q 018716          269 GGYDVILLTEIPYSVTS-----LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEM  340 (351)
Q Consensus       269 ~~~DlILasDviY~~~~-----~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~e~  340 (351)
                      ..||+|+. |- +.+..     .+.+++.+.++|+ |+|++..      |.   ....+++.+.+.|| .++.+...
T Consensus       172 ~~~D~ifl-D~-fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~t------ys---aa~~vrr~L~~aGF-~v~~~~g~  235 (257)
T 2qy6_A          172 QKVDAWFL-DG-FAPAKNPDMWTQNLFNAMARLAR-PGGTLAT------FT---SAGFVRRGLQEAGF-TMQKRKGF  235 (257)
T ss_dssp             TCEEEEEE-CS-SCTTTCGGGCCHHHHHHHHHHEE-EEEEEEE------SC---CBHHHHHHHHHHTE-EEEEECCS
T ss_pred             CeEEEEEE-CC-CCcccChhhcCHHHHHHHHHHcC-CCcEEEE------Ee---CCHHHHHHHHHCCC-EEEeCCCC
Confidence            37898887 32 33321     3567888888997 8887553      11   12357778888885 55544333

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=94.40  E-value=0.2  Score=49.46  Aligned_cols=40  Identities=23%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.++||=||.|.|.....+++....+|++.|+++.|++.
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~  243 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDG  243 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHH
Confidence            3578999999999988877777666799999999999864

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=93.87  E-value=0.045  Score=51.97  Aligned_cols=154  Identities=11%  Similarity=0.026  Sum_probs=93.2

Q ss_pred             CCCCCCCCc-ccchh-H---HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhH
Q 018716           84 ISSKPDGFL-KCWES-S---IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTV  158 (351)
Q Consensus        84 ~~g~y~gG~-k~Wea-s---~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~  158 (351)
                      ++|-|..|. ++|.+ .   -.|..|+.-- +    .+.+..+||+=+|+|.+|+-+.. +..++++.|.++..++    
T Consensus        58 ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l-~----~~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~----  127 (283)
T 2oo3_A           58 KTEEYKEGINPVWLDRENLPSLFLEYISVI-K----QINLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYN----  127 (283)
T ss_dssp             -CCGGGGTHHHHHHTGGGSCGGGHHHHHHH-H----HHSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHH----
T ss_pred             hcHHHHHHHHHHHhcccCCcHHHHHHHHHH-H----HhcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHH----
Confidence            456666663 57772 1   1223333221 1    14677899999999999999987 5589999999998874    


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCc
Q 018716          159 PNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGS  238 (351)
Q Consensus       159 ~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~  238 (351)
                       .++.|+..                    ..+++++..|--.   .+.                                
T Consensus       128 -~L~~Nl~~--------------------~~~~~V~~~D~~~---~L~--------------------------------  151 (283)
T 2oo3_A          128 -FLLKLPHF--------------------NKKVYVNHTDGVS---KLN--------------------------------  151 (283)
T ss_dssp             -HHTTSCCT--------------------TSCEEEECSCHHH---HHH--------------------------------
T ss_pred             -HHHHHhCc--------------------CCcEEEEeCcHHH---HHH--------------------------------
Confidence             34545421                    1234544433100   000                                


Q ss_pred             ccccCCcccccccccCchhhhhccccccCCCCccEEEEeccccC-ccCHHHHHHHHHHH-cCCCCeEEEEEecccccccc
Q 018716          239 IIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYS-VTSLKKLYLLIKKC-LRPPYGVVYLATKKNYVGFN  316 (351)
Q Consensus       239 ~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~-~~~~~~L~~~l~~~-L~~p~gv~ylA~K~~yfgv~  316 (351)
                                  .+            .....+||+|+. |=.|. ...++.+++.|.+. ++.++|++.+=+.-..   .
T Consensus       152 ------------~l------------~~~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~---~  203 (283)
T 2oo3_A          152 ------------AL------------LPPPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN---K  203 (283)
T ss_dssp             ------------HH------------CSCTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS---H
T ss_pred             ------------Hh------------cCCCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc---h
Confidence                        00            012346898885 99998 46788888888774 3347887665432221   2


Q ss_pred             chHHHHHHhhhhcCc
Q 018716          317 NAARHLRSLVDEEGI  331 (351)
Q Consensus       317 gg~~~F~~~ve~~G~  331 (351)
                      ..++.|.+.+++.|+
T Consensus       204 ~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          204 AWTEQFLRKMREISS  218 (283)
T ss_dssp             HHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhcCC
Confidence            357889999987775

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=90.54  E-value=1.5  Score=41.28  Aligned_cols=33  Identities=18%  Similarity=-0.008  Sum_probs=25.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHH----cC--CCEEEEEcCC
Q 018716          117 RGKRVLELSCGYGLPGIFACL----KG--AGTVHFQDLS  149 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~----~G--a~~V~~TD~s  149 (351)
                      ..++|||+|+..|.-++.++.    .|  ..+|++.|..
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dtf  144 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSF  144 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECS
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECC
Confidence            457999999999998887653    11  3579998864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=90.53  E-value=0.068  Score=63.95  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=13.9

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ...||+|+++.++.........++-++++|+ |+|..++.
T Consensus      1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~-p~G~l~~~ 1347 (2512)
T 2vz8_A         1309 LGKADLLVCNCALATLGDPAVAVGNMAATLK-EGGFLLLH 1347 (2512)
T ss_dssp             ---CCEEEEECC---------------------CCEEEEE
T ss_pred             CCceeEEEEcccccccccHHHHHHHHHHhcC-CCcEEEEE
Confidence            3469999999999877777777777888887 88977664

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=89.03  E-value=8.9  Score=38.88  Aligned_cols=53  Identities=15%  Similarity=0.110  Sum_probs=37.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH----cC----------CCEEEEEcCChHHHHhh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL----KG----------AGTVHFQDLSAETIRCT  156 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~----~G----------a~~V~~TD~s~~vL~~~  156 (351)
                      .++++|.+.+    ....+.+|+|-.||||..-+.+..    ..          ...++++|+++.+.+.+
T Consensus       204 ~Vv~lmv~l~----~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          204 PVVRFMVEVM----DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             HHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             HHHHHHHHhh----ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            5666666654    224677999999999987766652    11          23699999999988653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=88.79  E-value=0.44  Score=45.66  Aligned_cols=60  Identities=15%  Similarity=0.110  Sum_probs=43.5

Q ss_pred             CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCCh
Q 018716           86 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSA  150 (351)
Q Consensus        86 g~y~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~  150 (351)
                      |.-.+|.-.-.++.-|.....+.     ...++.+||||||++|--+-+++. .|+++|++.|+-.
T Consensus        68 g~~~~g~y~SR~~~KL~ei~~~~-----~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~  128 (321)
T 3lkz_A           68 GNVTGGHPVSRGTAKLRWLVERR-----FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG  128 (321)
T ss_dssp             TCCSSCCCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred             CcCcCCCccchHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence            33333433456777777776653     335777999999999999987764 6888899999875

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=88.14  E-value=0.63  Score=44.07  Aligned_cols=53  Identities=21%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAE  151 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~  151 (351)
                      .-.++.-|.+...+.     ...++.+|||||||.|--+-+|+. .++..|++.|+...
T Consensus        72 rSRAAfKL~ei~eK~-----~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           72 VSRGSAKLRWMEERG-----YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             SSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             ecHHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            345777887777654     334777999999999999998874 67778999998764

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=86.70  E-value=1.4  Score=42.06  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      ...+.+|+||-||+|..++.+...|...|.+.|+++...+
T Consensus         8 ~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~   47 (327)
T 2c7p_A            8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQE   47 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHH
T ss_pred             ccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHH
Confidence            3567899999999999999988889988999999998763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=85.36  E-value=1.2  Score=43.35  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  154 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~  154 (351)
                      .+..|||+|.|.|..+..++.. .+++|++.++++.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~   96 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK   96 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH
Confidence            4689999999999999888853 3568999999998764

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=85.21  E-value=1.2  Score=41.52  Aligned_cols=52  Identities=21%  Similarity=0.265  Sum_probs=39.6

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCCh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSA  150 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~  150 (351)
                      .-.++.-|.+...+.     ...++.+||||||++|--+-+++ +.|+++|++.|+-.
T Consensus        60 rSRa~~KL~ei~ek~-----~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           60 VSRGSAKLQWFVERN-----MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             SSTHHHHHHHHHHTT-----SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             cchHHHHHHHHHHhc-----CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            345666666666544     33577899999999999998776 46888999999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=84.66  E-value=14  Score=35.62  Aligned_cols=65  Identities=22%  Similarity=0.182  Sum_probs=38.8

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716           90 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus        90 gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..++-|+++-   +||.++....   ..+.+||-++.+.|-++..++..+.  +.++| |- +-++.+..|+.+|
T Consensus        17 ~~l~a~da~d---~~ll~~~~~~---~~~~~~~~~~d~~gal~~~~~~~~~--~~~~d-s~-~~~~~~~~n~~~~   81 (375)
T 4dcm_A           17 NPLQAWEAAD---EYLLQQLDDT---EIRGPVLILNDAFGALSCALAEHKP--YSIGD-SY-ISELATRENLRLN   81 (375)
T ss_dssp             CSCCSCCHHH---HHHHHTTTTC---CCCSCEEEECCSSSHHHHHTGGGCC--EEEES-CH-HHHHHHHHHHHHT
T ss_pred             CCCCccchHH---HHHHHhhhhc---cCCCCEEEECCCCCHHHHhhccCCc--eEEEh-HH-HHHHHHHHHHHHc
Confidence            3478999992   3333332111   2557899999999988877664433  45566 33 3334445555555

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=82.53  E-value=2.2  Score=41.76  Aligned_cols=47  Identities=9%  Similarity=0.027  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHH-H-cC-CCEEEEEcCChHHHHhhhHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFAC-L-KG-AGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa-~-~G-a~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      -++..|+|+||+.|..++.++ . .+ ..+|++.+-++..++. +..|+.+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~-L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT-LQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH-HHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH-HHHHHHh
Confidence            367899999999999998876 4 34 3699999999998865 3456655

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=81.56  E-value=2  Score=40.59  Aligned_cols=38  Identities=18%  Similarity=0.070  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      -++..+||.+||.|.-+..++..+ .+|++.|.++.+++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~   58 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVA   58 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHH
Confidence            367899999999999999988764 48999999999874

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=80.57  E-value=1.9  Score=41.19  Aligned_cols=36  Identities=28%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             CEEEEEcccCCHHHHHHHHcC--CCEEEEEcCChHHHH
Q 018716          119 KRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIR  154 (351)
Q Consensus       119 krVLELGcGtGL~gl~aa~~G--a~~V~~TD~s~~vL~  154 (351)
                      .+||||-||+|..++.+...|  +..|.+.|+++..++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~   40 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANE   40 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHH
Confidence            589999999999999888888  568999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	7e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	2e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	9e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.001
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	0.002

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 22/162 (13%)

Query: 67  KGKVSVADIIG-FTGSEMISSKPDGFLKCWESSIDLVNVLKHEI-----RDGQL------ 114
            G V    I+G F G  + SS    ++    +  D V ++K        +D  +      
Sbjct: 36  WGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMD 95

Query: 115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 174
              G  VLE   G G            ++          R  +      + + A++    
Sbjct: 96  INPGDTVLEAGSGSG----------GMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145

Query: 175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVT 216
             +S      +    +V F   D       +  +  D   + 
Sbjct: 146 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD 187

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 155
           F+ K VL++  G G+  +FA   GA  V   + S+ +   
Sbjct: 32  FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 71

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 9e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 149
           F+ K VL++ CG G+  +FA   GA  V   D+S
Sbjct: 37  FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS 70

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 109 IRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 149
           I      F+ K VL++ CG G+  +FA   GA  V   D S
Sbjct: 27  IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS 67

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 14/102 (13%)

Query: 67  KGKVSVADIIGFT-GSEMISSKPDGFLKCWESSIDLVNVLKHE-----------IRDGQL 114
            G + + ++     G  + +S          S ID +  +K             I     
Sbjct: 41  LGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLD 100

Query: 115 SFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETIR 154
              G R+++   G G         +  +G V   +   E  +
Sbjct: 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAK 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.32
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.32
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.29
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.28
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.26
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.21
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.18
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.16
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.16
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.14
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.11
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.06
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.06
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.03
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.0
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.99
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.98
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.95
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.92
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.92
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.9
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.9
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.89
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.88
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.86
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.85
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.85
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.78
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.77
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.77
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.75
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.74
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.72
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.72
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.72
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.68
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.67
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.67
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.65
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.63
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.61
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.61
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.6
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.6
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.42
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.4
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.39
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.37
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.37
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.36
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.36
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.25
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.25
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.24
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.22
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.17
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.11
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.06
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.03
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.98
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.89
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.88
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.78
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.59
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.59
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.58
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.44
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.44
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.27
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.18
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.04
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.88
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.75
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.72
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.72
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.68
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.65
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.59
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.55
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.36
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.16
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.86
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.48
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.41
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	94.83
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	94.68
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	91.6
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	90.81
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	89.35
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	82.81
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	82.25
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	81.37
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	80.65

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.32  E-value=2.1e-11  Score=111.93  Aligned_cols=152  Identities=21%  Similarity=0.268  Sum_probs=104.1

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccC
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  175 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~  175 (351)
                      +.....+.+.+.+......-++.+|||+|||+|..++.++.. |+ +|++.|+++.+++..     +.+....       
T Consensus        47 a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a-----~~~~~~~-------  113 (282)
T d2o57a1          47 ASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRN-----EEYNNQA-------  113 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhh-----hcccccc-------
Confidence            344445555554332233457899999999999999888764 65 899999999988542     2222211       


Q ss_pred             CCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 018716          176 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  255 (351)
Q Consensus       176 ~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~  255 (351)
                                .++.++.|..+|+.+.+                                                     
T Consensus       114 ----------gl~~~v~~~~~d~~~l~-----------------------------------------------------  130 (282)
T d2o57a1         114 ----------GLADNITVKYGSFLEIP-----------------------------------------------------  130 (282)
T ss_dssp             ----------TCTTTEEEEECCTTSCS-----------------------------------------------------
T ss_pred             ----------ccccccccccccccccc-----------------------------------------------------
Confidence                      13457888887775532                                                     


Q ss_pred             hhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----------------cccccchH
Q 018716          256 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNNAA  319 (351)
Q Consensus       256 ~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----------------yfgv~gg~  319 (351)
                                ...+.||+|++.+++++.+....+++-+.++|+ |+|+++++.-..                .+..-...
T Consensus       131 ----------~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (282)
T d2o57a1         131 ----------CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSL  199 (282)
T ss_dssp             ----------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCH
T ss_pred             ----------ccccccchhhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCH
Confidence                      124689999999999999999999999999997 899988863110                01111245


Q ss_pred             HHHHHhhhhcCceeeE
Q 018716          320 RHLRSLVDEEGIFGAH  335 (351)
Q Consensus       320 ~~F~~~ve~~G~~~~~  335 (351)
                      ..+.+.+++.|+-..+
T Consensus       200 ~~~~~~l~~~Gf~~i~  215 (282)
T d2o57a1         200 GLYRSLAKECGLVTLR  215 (282)
T ss_dssp             HHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHcCCceEE
Confidence            6778888888874443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=1e-11  Score=108.52  Aligned_cols=135  Identities=18%  Similarity=0.250  Sum_probs=92.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      ++.++..|++++.        ..++++|||+|||+|..++.++..+ .+|+++|+|+.+++. ...|++.|...      
T Consensus        37 ~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~-a~~n~~~~~l~------  100 (194)
T d1dusa_          37 VDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKL-AKENIKLNNLD------  100 (194)
T ss_dssp             CCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHH-HHHHHHHTTCT------
T ss_pred             cCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchh-HHHHHHHhCCc------
Confidence            4556656666542        3478999999999999999988765 489999999999865 34555544210      


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                    ..++++..+|+-+.                                                    
T Consensus       101 --------------~~~i~~~~~d~~~~----------------------------------------------------  114 (194)
T d1dusa_         101 --------------NYDIRVVHSDLYEN----------------------------------------------------  114 (194)
T ss_dssp             --------------TSCEEEEECSTTTT----------------------------------------------------
T ss_pred             --------------cceEEEEEcchhhh----------------------------------------------------
Confidence                          12456555554220                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccC-HHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhh
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTS-LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE  328 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~-~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~  328 (351)
                                  .....||+|++....|.... .+.+++.+.++|+ |+|++|+....+     .+...+...+++
T Consensus       115 ------------~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~-----~~~~~~~~~l~~  172 (194)
T d1dusa_         115 ------------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK-----QGAKSLAKYMKD  172 (194)
T ss_dssp             ------------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST-----HHHHHHHHHHHH
T ss_pred             ------------hccCCceEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEEEeCc-----CCHHHHHHHHHH
Confidence                        12468999998887776544 5788888999997 899998865332     244556555554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.29  E-value=1.7e-11  Score=107.95  Aligned_cols=104  Identities=16%  Similarity=0.163  Sum_probs=81.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      -++.+|||||||+|..++.++..|+ +|+++|+|++|++.     .+.+....                  -.+++.|..
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~-----A~~~~~~~------------------~~~~i~~~~   69 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKV-----ARAFIEGN------------------GHQQVEYVQ   69 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHH-----HHHHHHHT------------------TCCSEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhh-----hhhccccc------------------ccccccccc
Confidence            4678999999999999999988875 89999999999854     23333221                  013577777


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|+.+.+                                                               ...+.||+|+
T Consensus        70 ~d~~~l~---------------------------------------------------------------~~~~~fD~v~   86 (231)
T d1vl5a_          70 GDAEQMP---------------------------------------------------------------FTDERFHIVT   86 (231)
T ss_dssp             CCC-CCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred             ccccccc---------------------------------------------------------------cccccccccc
Confidence            7765532                                                               1246899999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +.+++++......+++-+.++|+ |+|++++.
T Consensus        87 ~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~  117 (231)
T d1vl5a_          87 CRIAAHHFPNPASFVSEAYRVLK-KGGQLLLV  117 (231)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ccccccccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            99999999999999999999997 99988875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=1.2e-11  Score=114.04  Aligned_cols=135  Identities=20%  Similarity=0.214  Sum_probs=95.5

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      .-+....+.++|.+..      .+|++|||+|||+|..++.+++.|+ +|+++|+++.+++. .+.|+++|.        
T Consensus       103 ~H~TT~l~l~~l~~~~------~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~-A~~na~~n~--------  166 (254)
T d2nxca1         103 HHETTRLALKALARHL------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQ-AEANAKRNG--------  166 (254)
T ss_dssp             CSHHHHHHHHHHHHHC------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHH-HHHHHHHTT--------
T ss_pred             ccchhhHHHHHHHhhc------CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHH-HHHHHHHcC--------
Confidence            3566777778887653      5899999999999999999999886 79999999999854 344544442        


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                   +  ++++..+|+..                                                     
T Consensus       167 -------------~--~~~~~~~d~~~-----------------------------------------------------  178 (254)
T d2nxca1         167 -------------V--RPRFLEGSLEA-----------------------------------------------------  178 (254)
T ss_dssp             -------------C--CCEEEESCHHH-----------------------------------------------------
T ss_pred             -------------C--ceeEEeccccc-----------------------------------------------------
Confidence                         1  23444443211                                                     


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCce
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~  332 (351)
                                 ....++||+|++.   +....+..+++.+.++|+ |+|+++++.-.     ......+.+.+++.|+-
T Consensus       179 -----------~~~~~~fD~V~an---i~~~~l~~l~~~~~~~Lk-pGG~lilSgil-----~~~~~~v~~~~~~~Gf~  237 (254)
T d2nxca1         179 -----------ALPFGPFDLLVAN---LYAELHAALAPRYREALV-PGGRALLTGIL-----KDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             -----------HGGGCCEEEEEEE---CCHHHHHHHHHHHHHHEE-EEEEEEEEEEE-----GGGHHHHHHHHHHTTCE
T ss_pred             -----------cccccccchhhhc---cccccHHHHHHHHHHhcC-CCcEEEEEecc-----hhhHHHHHHHHHHCCCE
Confidence                       0123689999985   334457788888999997 89999886311     12467788888899973

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=2.6e-11  Score=108.07  Aligned_cols=105  Identities=18%  Similarity=0.206  Sum_probs=80.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .-+|.||||||||+|..+..++..++ +|++.|+|+.|++.. +.+...|.                      ..++.+.
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A-~~~~~~~~----------------------~~~~~~~   69 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVA-SSFAQEKG----------------------VENVRFQ   69 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-HHHHHHHT----------------------CCSEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhh-hhhhcccc----------------------ccccccc
Confidence            35789999999999999999988775 899999999998642 22222221                      1246666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|.++.+                                                               ...+.||+|
T Consensus        70 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v   86 (234)
T d1xxla_          70 QGTAESLP---------------------------------------------------------------FPDDSFDII   86 (234)
T ss_dssp             ECBTTBCC---------------------------------------------------------------SCTTCEEEE
T ss_pred             cccccccc---------------------------------------------------------------cccccccee
Confidence            66554321                                                               134689999


Q ss_pred             EEeccccCccCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      ++..++...+..+.+++-+.++|+ |+|+++++
T Consensus        87 ~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~  118 (234)
T d1xxla_          87 TCRYAAHHFSDVRKAVREVARVLK-QDGRFLLV  118 (234)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             eeeceeecccCHHHHHHHHHHeeC-CCcEEEEE
Confidence            999999998889999999999998 99998885

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.21  E-value=1.7e-11  Score=103.87  Aligned_cols=110  Identities=21%  Similarity=0.272  Sum_probs=81.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .+.|++|||||||||..|+.|+..|+++|++.|.++.+++.     ++.|+..+.                 +..+++++
T Consensus        12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~-----~~~n~~~~~-----------------~~~~~~ii   69 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAI-----IQDNIIMTK-----------------AENRFTLL   69 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHH-----HHHHHHTTT-----------------CGGGEEEE
T ss_pred             hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhh-----hhhhhhhcc-----------------cccchhhh
Confidence            47899999999999999999998899999999999998854     455554321                 12346666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|+...   +                                                           .....+||+|
T Consensus        70 ~~D~~~~---l-----------------------------------------------------------~~~~~~fDiI   87 (152)
T d2esra1          70 KMEAERA---I-----------------------------------------------------------DCLTGRFDLV   87 (152)
T ss_dssp             CSCHHHH---H-----------------------------------------------------------HHBCSCEEEE
T ss_pred             ccccccc---c-----------------------------------------------------------ccccccccee
Confidence            5554220   0                                                           0124689999


Q ss_pred             EEeccccCccCHHHHHHHHHHH--cCCCCeEEEEEecc
Q 018716          275 LLTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKK  310 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~~~--L~~p~gv~ylA~K~  310 (351)
                      ++ |-.|....+...++.|.+.  |+ |+|++++-..+
T Consensus        88 f~-DPPy~~~~~~~~l~~i~~~~~L~-~~g~iiiE~~~  123 (152)
T d2esra1          88 FL-DPPYAKETIVATIEALAAKNLLS-EQVMVVCETDK  123 (152)
T ss_dssp             EE-CCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             Ee-chhhccchHHHHHHHHHHCCCcC-CCeEEEEEeCC
Confidence            88 8999998888988888763  65 89999885433

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=8e-11  Score=105.66  Aligned_cols=146  Identities=17%  Similarity=0.104  Sum_probs=101.5

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhc
Q 018716           95 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  173 (351)
Q Consensus        95 Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~  173 (351)
                      ++.+-.....|....    ...+|++|||+|||+|...+.++. .|+ +|++.|.|+.|++.     .+.|....     
T Consensus        15 ~p~~~~~~~~l~~~~----~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~-----ar~~~~~~-----   79 (245)
T d1nkva_          15 NPFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQ-----AKRRAEEL-----   79 (245)
T ss_dssp             SSCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHH-----HHHHHHHT-----
T ss_pred             CCCCHHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhH-----HHHHHHHh-----
Confidence            344445555555542    235799999999999998888776 454 89999999999854     23333211     


Q ss_pred             cCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 018716          174 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  253 (351)
Q Consensus       174 ~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls  253 (351)
                                  .++.+|+|..+|+.+.                                                    
T Consensus        80 ------------gl~~~v~~~~~d~~~~----------------------------------------------------   95 (245)
T d1nkva_          80 ------------GVSERVHFIHNDAAGY----------------------------------------------------   95 (245)
T ss_dssp             ------------TCTTTEEEEESCCTTC----------------------------------------------------
T ss_pred             ------------hccccchhhhhHHhhc----------------------------------------------------
Confidence                        1334677777766442                                                    


Q ss_pred             CchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecc--c----------c----ccccc
Q 018716          254 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK--N----------Y----VGFNN  317 (351)
Q Consensus       254 ~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~--~----------y----fgv~g  317 (351)
                                  ..+++||+|++.+++++....+.+++-+.++|+ |+|++++..--  .          +    ...-.
T Consensus        96 ------------~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
T d1nkva_          96 ------------VANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFL  162 (245)
T ss_dssp             ------------CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSC
T ss_pred             ------------cccCceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEeccccCCCChHHHHHHhccCCCcccC
Confidence                        124679999999999999999999999999998 99998886310  0          0    00012


Q ss_pred             hHHHHHHhhhhcCce
Q 018716          318 AARHLRSLVDEEGIF  332 (351)
Q Consensus       318 g~~~F~~~ve~~G~~  332 (351)
                      ....+.+.+++.|+-
T Consensus       163 ~~~~~~~~~~~aG~~  177 (245)
T d1nkva_         163 TLPGLVGAFDDLGYD  177 (245)
T ss_dssp             CHHHHHHHHHTTTBC
T ss_pred             CHHHHHHHHHHcCCE
Confidence            456678888888873

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.16  E-value=1.3e-10  Score=103.30  Aligned_cols=101  Identities=22%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .+++++|||||||+|.....++..|. +|+++|+|+++++..     +.+                      ....+.+.
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a-----~~~----------------------~~~~~~~~   69 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHA-----QGR----------------------LKDGITYI   69 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHH-----HHH----------------------SCSCEEEE
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhh-----hcc----------------------cccccccc
Confidence            36889999999999999998887775 799999999887431     111                      11235555


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .++++..                                                                ..++.||+|
T Consensus        70 ~~~~~~~----------------------------------------------------------------~~~~~fD~I   85 (225)
T d2p7ia1          70 HSRFEDA----------------------------------------------------------------QLPRRYDNI   85 (225)
T ss_dssp             ESCGGGC----------------------------------------------------------------CCSSCEEEE
T ss_pred             ccccccc----------------------------------------------------------------ccccccccc
Confidence            5443221                                                                124679999


Q ss_pred             EEeccccCccCHHHHHHHHH-HHcCCCCeEEEEEe
Q 018716          275 LLTEIPYSVTSLKKLYLLIK-KCLRPPYGVVYLAT  308 (351)
Q Consensus       275 LasDviY~~~~~~~L~~~l~-~~L~~p~gv~ylA~  308 (351)
                      ++.+++.+.+....+++-+. ++|+ |+|.+++..
T Consensus        86 ~~~~vleh~~d~~~~l~~i~~~~Lk-~gG~l~i~~  119 (225)
T d2p7ia1          86 VLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVC  119 (225)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             cccceeEecCCHHHHHHHHHHHhcC-CCceEEEEe
Confidence            99999998888888777776 7887 899999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.2e-10  Score=101.35  Aligned_cols=150  Identities=15%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      ...+.+|||||||+|..+..++..+..+|++.|+|+.|++.     .+.|....                  -...++|.
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~-----ak~~~~~~------------------~~~~~~f~  114 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ-----AKTYLGEE------------------GKRVRNYF  114 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHH-----HHHHTGGG------------------GGGEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhc-----cccccccc------------------cccccccc
Confidence            35678999999999999887765556789999999999854     22222110                  01245666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .+|..+.+                                                               .....||+|
T Consensus       115 ~~d~~~~~---------------------------------------------------------------~~~~~fD~I  131 (222)
T d2ex4a1         115 CCGLQDFT---------------------------------------------------------------PEPDSYDVI  131 (222)
T ss_dssp             ECCGGGCC---------------------------------------------------------------CCSSCEEEE
T ss_pred             cccccccc---------------------------------------------------------------ccccccccc
Confidence            55543311                                                               135789999


Q ss_pred             EEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEeccc----cc-----cccchHHHHHHhhhhcCceeeEEe--eecC
Q 018716          275 LLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN----YV-----GFNNAARHLRSLVDEEGIFGAHLI--KEMT  341 (351)
Q Consensus       275 LasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~~----yf-----gv~gg~~~F~~~ve~~G~~~~~~v--~e~~  341 (351)
                      ++.+++++-..  ...+++-++++|+ |+|.+++.....    .+     ........+.+++++.|+-..+..  ...+
T Consensus       132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP  210 (222)
T d2ex4a1         132 WIQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLP  210 (222)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred             ccccccccchhhhhhhHHHHHHHhcC-CcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCC
Confidence            99999988654  4568888888997 899888762111    11     111257889999999997333322  2233


Q ss_pred             C--cceeeeecC
Q 018716          342 D--RDIWKFFLK  351 (351)
Q Consensus       342 d--~~i~~~~~~  351 (351)
                      +  ..||.|-+|
T Consensus       211 ~~~~~v~~~al~  222 (222)
T d2ex4a1         211 DEIYHVYSFALR  222 (222)
T ss_dssp             TTSCEEEEEEEC
T ss_pred             cchhEEEEEEeC
Confidence            2  446666543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=2.4e-10  Score=99.33  Aligned_cols=38  Identities=32%  Similarity=0.384  Sum_probs=34.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ++.+|||||||+|..++.++..|+ +|+++|+|++|++.
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~   74 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRK   74 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhh
Confidence            567999999999999999998876 89999999999865

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1e-10  Score=109.79  Aligned_cols=104  Identities=27%  Similarity=0.299  Sum_probs=76.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++|++|||||||+|+.+++|++.|+++|++.|.++.+..  ...|+..|.                     +..+|.+.
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~--a~~~~~~n~---------------------~~~~v~~~   87 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY--AVKIVKANK---------------------LDHVVTII   87 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH--HHHHHHHTT---------------------CTTTEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhh--hhhHHHHhC---------------------CccccceE
Confidence            4689999999999999999999999999999999986532  234444432                     23457776


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .++..+.+                                                               ....+||+|
T Consensus        88 ~~~~~~~~---------------------------------------------------------------~~~~~~D~i  104 (316)
T d1oria_          88 KGKVEEVE---------------------------------------------------------------LPVEKVDII  104 (316)
T ss_dssp             ESCTTTCC---------------------------------------------------------------CSSSCEEEE
T ss_pred             eccHHHcc---------------------------------------------------------------cccceeEEE
Confidence            66544321                                                               124678999


Q ss_pred             EEe---ccccCccCHHHHHHHHHHHcCCCCeEEE
Q 018716          275 LLT---EIPYSVTSLKKLYLLIKKCLRPPYGVVY  305 (351)
Q Consensus       275 Las---DviY~~~~~~~L~~~l~~~L~~p~gv~y  305 (351)
                      ++.   ..++.+..++.++..++++|+ |+|+++
T Consensus       105 vs~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii  137 (316)
T d1oria_         105 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF  137 (316)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             eeeeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence            763   445667789999999999997 788765

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.7e-10  Score=104.62  Aligned_cols=40  Identities=35%  Similarity=0.473  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHH
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI  153 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL  153 (351)
                      ..++|++|||||||+|+.++.+++.|+++|++.|.++.+.
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY   71 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH
Confidence            4579999999999999999999999999999999999765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=8.6e-10  Score=98.01  Aligned_cols=39  Identities=36%  Similarity=0.553  Sum_probs=35.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||||...+.++..|+ +|+++|.|+.|++.
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~   78 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRV   78 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccc
Confidence            4678999999999999999998887 89999999999854

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=5e-10  Score=105.40  Aligned_cols=104  Identities=22%  Similarity=0.308  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  194 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~  194 (351)
                      .++|++|||||||+|+.++.|++.|+++|++.|.++ +++. .+.++..|.                     +..++.+.
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~-a~~~~~~~~---------------------~~~~i~~i   92 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-AKELVELNG---------------------FSDKITLL   92 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-HHHHHHHTT---------------------CTTTEEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHH-HHHHHHHhC---------------------ccccceEE
Confidence            368999999999999999999999999999999997 4432 233333332                     23456666


Q ss_pred             eccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEE
Q 018716          195 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  274 (351)
Q Consensus       195 ~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlI  274 (351)
                      .++..+.+                                                               ....+||+|
T Consensus        93 ~~~~~~l~---------------------------------------------------------------~~~~~~D~i  109 (328)
T d1g6q1_          93 RGKLEDVH---------------------------------------------------------------LPFPKVDII  109 (328)
T ss_dssp             ESCTTTSC---------------------------------------------------------------CSSSCEEEE
T ss_pred             Eeehhhcc---------------------------------------------------------------CcccceeEE
Confidence            65543321                                                               134689999


Q ss_pred             EEe---ccccCccCHHHHHHHHHHHcCCCCeEEE
Q 018716          275 LLT---EIPYSVTSLKKLYLLIKKCLRPPYGVVY  305 (351)
Q Consensus       275 Las---DviY~~~~~~~L~~~l~~~L~~p~gv~y  305 (351)
                      ++.   ..+..+...+.+...++++|+ |+|+++
T Consensus       110 ~se~~~~~~~~e~~~~~~~~a~~r~Lk-pgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEecceeeccchhHHHHHHHHHhccC-CCeEEE
Confidence            984   445567788899999999997 788764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.00  E-value=1.6e-09  Score=93.81  Aligned_cols=121  Identities=18%  Similarity=0.183  Sum_probs=83.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++++++.     .+.|...+                 .+..+++++.
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~-----a~~n~~~~-----------------gl~~~v~~~~   88 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIST-----TEMNLQRH-----------------GLGDNVTLME   88 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHH-----HHHHHHHT-----------------TCCTTEEEEE
T ss_pred             CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHH-----HHHHHHHc-----------------CCCcceEEEE
Confidence            589999999999999999988764 589999999999854     34444322                 1334677766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|..+..                                                               .....||+|+
T Consensus        89 gda~~~~---------------------------------------------------------------~~~~~~D~v~  105 (186)
T d1l3ia_          89 GDAPEAL---------------------------------------------------------------CKIPDIDIAV  105 (186)
T ss_dssp             SCHHHHH---------------------------------------------------------------TTSCCEEEEE
T ss_pred             Cchhhcc---------------------------------------------------------------cccCCcCEEE
Confidence            6542210                                                               1235789999


Q ss_pred             EeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccccchHHHHHHhhhhcCc
Q 018716          276 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       276 asDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~  331 (351)
                      ......   ..+.+++.+.++|+ |+|.+++..-.     ..+...+.+.+++.|+
T Consensus       106 ~~~~~~---~~~~~~~~~~~~Lk-pgG~lvi~~~~-----~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_         106 VGGSGG---ELQEILRIIKDKLK-PGGRIIVTAIL-----LETKFEAMECLRDLGF  152 (186)
T ss_dssp             ESCCTT---CHHHHHHHHHHTEE-EEEEEEEEECB-----HHHHHHHHHHHHHTTC
T ss_pred             EeCccc---cchHHHHHHHHHhC-cCCEEEEEeec-----cccHHHHHHHHHHcCC
Confidence            877653   35778888888897 88877664321     1245667777777764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=1e-09  Score=96.50  Aligned_cols=39  Identities=31%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..+++|||+|||+|.....++..|+ +|+++|+|+.|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~   79 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEV   79 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeecccccccc
Confidence            3678999999999999999998886 89999999999854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.98  E-value=9.9e-10  Score=95.40  Aligned_cols=104  Identities=21%  Similarity=0.323  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++.||||||||+|...+.++..|. +|++.|+++.+++.     .+.+....                 .+ ..+++..
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~-----a~~~~~~~-----------------~~-~~~~~~~   84 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMAN-----LERIKAAE-----------------GL-DNLQTDL   84 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-----------------TC-TTEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHH-----HHHHhhhc-----------------cc-cchhhhh
Confidence            4566999999999999999998886 89999999999854     23333211                 01 1234333


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      .|....                                                                ..++.||+|+
T Consensus        85 ~d~~~~----------------------------------------------------------------~~~~~fD~I~  100 (198)
T d2i6ga1          85 VDLNTL----------------------------------------------------------------TFDGEYDFIL  100 (198)
T ss_dssp             CCTTTC----------------------------------------------------------------CCCCCEEEEE
T ss_pred             eecccc----------------------------------------------------------------cccccccEEE
Confidence            332211                                                                1246799999


Q ss_pred             EeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          276 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       276 asDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                      +..+++..  +..+.+++-+.++|+ |+|++++..
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~  134 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTK-PGGYNLIVA  134 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence            99999975  457789999999997 899888753

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.95  E-value=2.5e-09  Score=94.80  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.|++|||+|||+|..++.+++.|+++|+++|+++.+++.
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~   86 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET   86 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHH
Confidence            468999999999999999999999998899999999988753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.92  E-value=2.4e-09  Score=95.53  Aligned_cols=39  Identities=28%  Similarity=0.267  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++++|||+|||+|..++.++..|. +|++.|.|+.|++.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~   74 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSE   74 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHH
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhh
Confidence            5678999999999999999998886 89999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.92  E-value=4.8e-09  Score=95.41  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..+++|||+|||+|..+..++..+..+|++.|.++.|++..     +.+..                    -.+.++|+.
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a-----~~~~~--------------------~~~~~~~~~  146 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEA-----KRELA--------------------GMPVGKFIL  146 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHH-----HHHTT--------------------TSSEEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhh-----hcccc--------------------ccccceeEE
Confidence            46789999999999999876655556899999999998542     22211                    012456655


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      ++..+.                                                               ....+.||+|+
T Consensus       147 ~d~~~~---------------------------------------------------------------~~~~~~fD~I~  163 (254)
T d1xtpa_         147 ASMETA---------------------------------------------------------------TLPPNTYDLIV  163 (254)
T ss_dssp             SCGGGC---------------------------------------------------------------CCCSSCEEEEE
T ss_pred             cccccc---------------------------------------------------------------ccCCCccceEE
Confidence            443221                                                               01357899999


Q ss_pred             EeccccCccC--HHHHHHHHHHHcCCCCeEEEEEeccc---cc-------cccchHHHHHHhhhhcCc
Q 018716          276 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN---YV-------GFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       276 asDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~~---yf-------gv~gg~~~F~~~ve~~G~  331 (351)
                      +..++++-..  +..+++-+++.|+ |+|.+++.....   ++       .+..+...|.+++++.|+
T Consensus       164 ~~~vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf  230 (254)
T d1xtpa_         164 IQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGV  230 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTC
T ss_pred             eeccccccchhhhHHHHHHHHHhcC-CCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCC
Confidence            9999988754  4466777777887 899888852110   01       112257789999999997

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=8.8e-09  Score=95.49  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      ..|++......     .-.+.+|||||||+|..++.++. ....+|+++|+|+..++. ++.|++.|.            
T Consensus        95 E~lv~~~l~~~-----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~-A~~Na~~~~------------  156 (274)
T d2b3ta1          95 ECLVEQALARL-----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSL-AQRNAQHLA------------  156 (274)
T ss_dssp             HHHHHHHHHHS-----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHH-HHHHHHHHT------------
T ss_pred             hhhhhhHhhhh-----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhH-HHHHHHHhC------------
Confidence            35666555542     23567999999999999998875 445699999999999854 455555442            


Q ss_pred             CCCCCcccCCCCceeeeeccCCC
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEE  200 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~  200 (351)
                               + .+|+|+.+||-+
T Consensus       157 ---------~-~~v~~~~~d~~~  169 (274)
T d2b3ta1         157 ---------I-KNIHILQSDWFS  169 (274)
T ss_dssp             ---------C-CSEEEECCSTTG
T ss_pred             ---------c-ccceeeeccccc
Confidence                     2 258888888754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=2e-09  Score=101.61  Aligned_cols=49  Identities=31%  Similarity=0.210  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      -+|++|||+|||+|..++.++..|+++|+..|+++.+++. ...|+.+|.
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~-a~~N~~~ng  192 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIET-AKENAKLNG  192 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHTT
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHH-HHHHHHHcC
Confidence            3689999999999999999999899899999999999865 455666553

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.89  E-value=8.4e-09  Score=94.79  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=82.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCC
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  177 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~  177 (351)
                      ++.++|.+.+.   ...+..+|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|...          
T Consensus        13 d~l~~l~~~~~---~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~-----a~~~~~~----------   74 (281)
T d2gh1a1          13 DYVSFLVNTVW---KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE-----ARELFRL----------   74 (281)
T ss_dssp             HHHHHHHHTTS---CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHH-----HHHHHHS----------
T ss_pred             HHHHHHHHHHh---ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhh-----hhccccc----------
Confidence            45566766532   2346789999999999999888753 2 2489999999998854     2333321          


Q ss_pred             CCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 018716          178 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  257 (351)
Q Consensus       178 s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~  257 (351)
                               ...+++|..+|..+.+                                                       
T Consensus        75 ---------~~~~~~f~~~d~~~~~-------------------------------------------------------   90 (281)
T d2gh1a1          75 ---------LPYDSEFLEGDATEIE-------------------------------------------------------   90 (281)
T ss_dssp             ---------SSSEEEEEESCTTTCC-------------------------------------------------------
T ss_pred             ---------cccccccccccccccc-------------------------------------------------------
Confidence                     1225666555433210                                                       


Q ss_pred             hhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEe
Q 018716          258 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  308 (351)
Q Consensus       258 W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~  308 (351)
                               ...+||+|++..++++.+..+.+++-+.++|+ |+|.+++..
T Consensus        91 ---------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~  131 (281)
T d2gh1a1          91 ---------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFE  131 (281)
T ss_dssp             ---------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ---------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEE
Confidence                     12469999999999999999999999999997 899877653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=2.3e-08  Score=92.41  Aligned_cols=118  Identities=16%  Similarity=0.127  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhcc
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  174 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~  174 (351)
                      +|.....+.+.+.+    ..-+|.+|||||||+|.+.+.++.. |+ +|++.|+|++.++..     +......      
T Consensus        35 ~AQ~~k~~~~~~~l----~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a-----~~~~~~~------   98 (280)
T d2fk8a1          35 EAQYAKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARC-----EQVLASI------   98 (280)
T ss_dssp             HHHHHHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHTS------
T ss_pred             HHHHHHHHHHHHHc----CCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHH-----HHHHHhh------
Confidence            44455566666553    3457899999999999999888864 65 899999999887431     1111100      


Q ss_pred             CCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 018716          175 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  254 (351)
Q Consensus       175 ~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~  254 (351)
                                 .+...+.+...|..                                                       
T Consensus        99 -----------~l~~~~~~~~~d~~-------------------------------------------------------  112 (280)
T d2fk8a1          99 -----------DTNRSRQVLLQGWE-------------------------------------------------------  112 (280)
T ss_dssp             -----------CCSSCEEEEESCGG-------------------------------------------------------
T ss_pred             -----------ccccchhhhhhhhh-------------------------------------------------------
Confidence                       12223332211110                                                       


Q ss_pred             chhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          255 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       255 ~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                                 ...+.||.|++.+++.+.  ..++.+++.|.++|+ |+|++++-
T Consensus       113 -----------~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~  155 (280)
T d2fk8a1         113 -----------DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQ  155 (280)
T ss_dssp             -----------GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEE
T ss_pred             -----------hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEE
Confidence                       124689999999999887  567999999999997 99999874

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.86  E-value=5.4e-09  Score=94.05  Aligned_cols=107  Identities=24%  Similarity=0.150  Sum_probs=74.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      .++++|||||||+|.....++..|..+|+++|+|++|++..     +......                 ....++.|..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A-----~~r~~~~-----------------~~~~~v~f~~   80 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDA-----RVRARNM-----------------KRRFKVFFRA   80 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHH-----HHHHHTS-----------------CCSSEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHH-----HHHHHhc-----------------CCCcceEEEE
Confidence            47899999999999887777777877999999999998542     1111100                 1123566666


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|....+                                                              ......||+|+
T Consensus        81 ~D~~~~~--------------------------------------------------------------~~~~~~fD~V~   98 (252)
T d1ri5a_          81 QDSYGRH--------------------------------------------------------------MDLGKEFDVIS   98 (252)
T ss_dssp             SCTTTSC--------------------------------------------------------------CCCSSCEEEEE
T ss_pred             cchhhhc--------------------------------------------------------------ccccccceEEE
Confidence            5532210                                                              01246799999


Q ss_pred             EeccccCc----cCHHHHHHHHHHHcCCCCeEEEEE
Q 018716          276 LTEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLA  307 (351)
Q Consensus       276 asDviY~~----~~~~~L~~~l~~~L~~p~gv~ylA  307 (351)
                      +..++...    +.+..+++.+.++|+ |+|++++.
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~~  133 (252)
T d1ri5a_          99 SQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMT  133 (252)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred             EcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEEE
Confidence            99988643    456678888888997 89998875

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=4.6e-09  Score=90.41  Aligned_cols=57  Identities=25%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .|..+|.+.+      .+|++|||+|||+|..|+.++..|+ +|++.|.|+.+++. ++.|++.|
T Consensus        30 ~lf~~l~~~~------~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~-~~~N~~~~   86 (171)
T d1ws6a1          30 ALFDYLRLRY------PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRL-LKENVRRT   86 (171)
T ss_dssp             HHHHHHHHHC------TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHH-HHHHHHHH
T ss_pred             HHHHHhhccc------cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhh-hhHHHHhh
Confidence            5667776652      4788999999999999999998887 78899999999864 35555544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=2.4e-08  Score=88.02  Aligned_cols=42  Identities=29%  Similarity=0.331  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|++|||+|||||..++.++..|+.+|++.|+++.+++.
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~   84 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV   84 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHH
Confidence            468999999999999999999988898899999999998854

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.7e-08  Score=87.60  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=43.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNV  161 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv  161 (351)
                      .+..+|.+.       +.+++||||+||+|.+|+.|+..|+++|++.|.|+.+++. ++.|+
T Consensus        33 ~lfn~l~~~-------~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~-~k~N~   86 (183)
T d2fpoa1          33 TLFNWLAPV-------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ-LIKNL   86 (183)
T ss_dssp             HHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH-HHHHH
T ss_pred             HHHhhhhcc-------cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhH-HHHHH
Confidence            455556544       5789999999999999999999999999999999999854 23444

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.77  E-value=2e-08  Score=84.63  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++.||||+|||+|-..+.++..|. +|++.|+|+.|++.
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~   57 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVER   57 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHH
Confidence            35899999999999999999999897 89999999999854

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.6e-09  Score=96.48  Aligned_cols=64  Identities=11%  Similarity=0.012  Sum_probs=46.1

Q ss_pred             CCCCccEEEEeccccCc----cCHHHHHHHHHHHcCCCCeEEEEEecccc--c--------cccchHHHHHHhhhhcCc
Q 018716          267 GEGGYDVILLTEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLATKKNY--V--------GFNNAARHLRSLVDEEGI  331 (351)
Q Consensus       267 ~~~~~DlILasDviY~~----~~~~~L~~~l~~~L~~p~gv~ylA~K~~y--f--------gv~gg~~~F~~~ve~~G~  331 (351)
                      ..++||+|++..++-+.    +.+..+++.|.++|+ |+|.++++.-...  +        ...=...++++.+++.|+
T Consensus       149 ~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-pGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  226 (257)
T d2a14a1         149 VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGF  226 (257)
T ss_dssp             CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTE
T ss_pred             cCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC-CCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCC
Confidence            56789999999988443    467788888999997 8998887642110  0        001157889999999996

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=1.3e-07  Score=87.71  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=85.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhh
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ  172 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~  172 (351)
                      +=+|...+.+++.+.+    ..-+|.+|||||||.|-+.+.++. .|+ +|++.++|++-++.     ++......    
T Consensus        43 L~eAQ~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~-----a~~~~~~~----  108 (285)
T d1kpga_          43 LQEAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANH-----VQQLVANS----  108 (285)
T ss_dssp             HHHHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHc----CCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHH-----HHHHHHhh----
Confidence            3356677778887764    346899999999999999998764 675 99999999976643     22222110    


Q ss_pred             ccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 018716          173 SRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL  252 (351)
Q Consensus       173 ~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~l  252 (351)
                                   .+..+|++...|+.+                                                    
T Consensus       109 -------------g~~~~v~~~~~d~~~----------------------------------------------------  123 (285)
T d1kpga_         109 -------------ENLRSKRVLLAGWEQ----------------------------------------------------  123 (285)
T ss_dssp             -------------CCCSCEEEEESCGGG----------------------------------------------------
T ss_pred             -------------hhhhhhHHHHhhhhc----------------------------------------------------
Confidence                         134466665554422                                                    


Q ss_pred             cCchhhhhccccccCCCCccEEEEeccccCc--cCHHHHHHHHHHHcCCCCeEEEE
Q 018716          253 SGSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYL  306 (351)
Q Consensus       253 s~~~~W~~~~e~~~~~~~~DlILasDviY~~--~~~~~L~~~l~~~L~~p~gv~yl  306 (351)
                                    .++.||-|++-+.+-+.  ..++.+++-+.++|+ |+|++++
T Consensus       124 --------------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l  164 (285)
T d1kpga_         124 --------------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLL  164 (285)
T ss_dssp             --------------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEE
T ss_pred             --------------ccccccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEE
Confidence                          13578999999999887  567899999999997 9998886

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1e-08  Score=91.33  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+|++|||+|||+|.....++..+..+|++.|+|+.+++.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~   91 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR   91 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHH
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHH
Confidence            4688999999999999998887665689999999999854

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=5.2e-08  Score=84.19  Aligned_cols=70  Identities=11%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc----------------cccc--cchHHHHHHhhhhc
Q 018716          268 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGF--NNAARHLRSLVDEE  329 (351)
Q Consensus       268 ~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~----------------yfgv--~gg~~~F~~~ve~~  329 (351)
                      .+.||+|++..++++.+....+++-+.++|+ |+|.+++..-..                ++..  .-+..++.+++++.
T Consensus        89 ~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~  167 (208)
T d1vlma_          89 DESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA  167 (208)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccchhhhhhcCC-CCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHc
Confidence            5789999999999999999999999999997 999988864211                1100  01467788999999


Q ss_pred             CceeeEEee
Q 018716          330 GIFGAHLIK  338 (351)
Q Consensus       330 G~~~~~~v~  338 (351)
                      |+-.+++..
T Consensus       168 Gf~~i~v~~  176 (208)
T d1vlma_         168 GFEEFKVVQ  176 (208)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            974454443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.72  E-value=5e-08  Score=85.84  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc---CCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~---Ga~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||||||||..++.+++.   ...+|++.|.|+.|++.
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~   80 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER   80 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHH
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHH
Confidence            46789999999999999888752   23489999999999864

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4e-08  Score=87.06  Aligned_cols=52  Identities=21%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      -.|.+++....    ...++.||||+|||+|..++.++..|. +|++.|+|+.+++.
T Consensus        31 ~~l~~~~~~~l----~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~   82 (229)
T d2bzga1          31 QLLKKHLDTFL----KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE   82 (229)
T ss_dssp             HHHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence            56777776653    224788999999999999999999998 89999999998853

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.72  E-value=2.4e-08  Score=86.79  Aligned_cols=48  Identities=21%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      .+.|++||||.||+|..|+.++..|+++|++.|.++.+++. ...|+..
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~-~~~N~~~   86 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKV-IKENIAI   86 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHH
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHH-HHHHhhh
Confidence            36899999999999999999999999999999999998854 3444443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=8.9e-08  Score=88.46  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCC
Q 018716           99 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES  178 (351)
Q Consensus        99 ~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s  178 (351)
                      ..|++++......    ....+|+|+|||+|..++.++.....+|+++|+|++.++. +..|++.|..            
T Consensus        96 E~lv~~~~~~~~~----~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~-A~~Na~~~~~------------  158 (271)
T d1nv8a_          96 EELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEI-ARKNAERHGV------------  158 (271)
T ss_dssp             HHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHH-HHHHHHHTTC------------
T ss_pred             hhhhhhhhhhhcc----ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHH-HHHHHHHcCC------------
Confidence            3566666554322    2346899999999999999887766799999999999965 4566665532            


Q ss_pred             CCCCcccCCCCceeeeeccCCC
Q 018716          179 SLTPSRQTLAPSVHFYAGDWEE  200 (351)
Q Consensus       179 ~~~p~~~~l~~~v~~~~gdW~~  200 (351)
                               ..++.+..++|.+
T Consensus       159 ---------~~~~~i~~~~~~~  171 (271)
T d1nv8a_         159 ---------SDRFFVRKGEFLE  171 (271)
T ss_dssp             ---------TTSEEEEESSTTG
T ss_pred             ---------CceeEEeeccccc
Confidence                     2356677788865

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=9e-08  Score=89.07  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=43.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716           94 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIR  154 (351)
Q Consensus        94 ~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~  154 (351)
                      +=+|.....+++.+..    ...+|.+|||||||.|.+.+.++. .|+ +|++.|+|++.++
T Consensus        42 L~~Aq~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~   98 (291)
T d1kpia_          42 LEEAQYAKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYA   98 (291)
T ss_dssp             HHHHHHHHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHH
Confidence            4455567777777663    346899999999999999988774 675 8999999998764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=1.1e-07  Score=87.07  Aligned_cols=48  Identities=19%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      -+|.+|||+|||+|..++.+|..|+.+|++.|+|+..++. +..|+++|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~-~~~N~~~n  153 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLN  153 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHT
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHH-HHHHHHHh
Confidence            4789999999999999999998887799999999999965 45666666

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.67  E-value=3.2e-07  Score=82.47  Aligned_cols=134  Identities=16%  Similarity=0.218  Sum_probs=87.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..++|||+|||+|...+.++.. ...++++.|+ +++++.     .+.+....                 .+..+|++..
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~rv~~~~  136 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDT-----ARSYLKDE-----------------GLSDRVDVVE  136 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHH-----HHHHHHHh-----------------hcccchhhcc
Confidence            4579999999999999888864 3458999998 456643     33343321                 1234677766


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|.-+                                                                 ....+||+|+
T Consensus       137 ~D~~~-----------------------------------------------------------------~~~~~~D~v~  151 (253)
T d1tw3a2         137 GDFFE-----------------------------------------------------------------PLPRKADAII  151 (253)
T ss_dssp             CCTTS-----------------------------------------------------------------CCSSCEEEEE
T ss_pred             ccchh-----------------------------------------------------------------hcccchhhee
Confidence            54311                                                                 0124689999


Q ss_pred             EeccccCcc--CHHHHHHHHHHHcCCCCeEEEEEeccc----c---------------c-cccchHHHHHHhhhhcCcee
Q 018716          276 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN----Y---------------V-GFNNAARHLRSLVDEEGIFG  333 (351)
Q Consensus       276 asDviY~~~--~~~~L~~~l~~~L~~p~gv~ylA~K~~----y---------------f-gv~gg~~~F~~~ve~~G~~~  333 (351)
                      ++.++++-+  ....+++-+.+.|+ |+|.+++.-.-.    .               + |...+..+|.+++++.|+ .
T Consensus       152 ~~~vlh~~~d~~~~~~L~~~~~~Lk-PGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf-~  229 (253)
T d1tw3a2         152 LSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL-V  229 (253)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE-E
T ss_pred             eccccccCCchhhHHHHHHHHHhcC-CCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCC-e
Confidence            999998643  34467777888897 999988863110    0               0 111256789999999996 4


Q ss_pred             eEEeeec
Q 018716          334 AHLIKEM  340 (351)
Q Consensus       334 ~~~v~e~  340 (351)
                      ...+...
T Consensus       230 ~~~v~~~  236 (253)
T d1tw3a2         230 VEEVRQL  236 (253)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            4444443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.65  E-value=3.7e-07  Score=81.95  Aligned_cols=151  Identities=14%  Similarity=0.132  Sum_probs=95.6

Q ss_pred             cccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhh
Q 018716           92 LKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQAR  169 (351)
Q Consensus        92 ~k~Weas~-~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~  169 (351)
                      .+.|+.-. -|+..|...+. ....-+|.+|||||||+|.....++..+ ...|++.|+++.|++.+     ..+...  
T Consensus        49 ~r~w~p~rsklaA~i~~gl~-~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a-----~~~a~~--  120 (230)
T d1g8sa_          49 YRIWNPNKSKLAAAIIKGLK-VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMREL-----LDACAE--  120 (230)
T ss_dssp             EEECCTTTCHHHHHHHTTCC-CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHH-----HHHTTT--
T ss_pred             eeeECCCccHHHHHHHhhHH-hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHH-----HHHHhh--
Confidence            67888653 66666665432 1234579999999999999998888653 45899999999998642     222110  


Q ss_pred             hhhccCCCCCCCCcccCCCCceeeeeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccc
Q 018716          170 ERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRS  249 (351)
Q Consensus       170 ~~~~~~~~s~~~p~~~~l~~~v~~~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~  249 (351)
                                        .+.+.++.+|.....                                               
T Consensus       121 ------------------~~ni~~i~~d~~~~~-----------------------------------------------  135 (230)
T d1g8sa_         121 ------------------RENIIPILGDANKPQ-----------------------------------------------  135 (230)
T ss_dssp             ------------------CTTEEEEECCTTCGG-----------------------------------------------
T ss_pred             ------------------hcccceEEEeeccCc-----------------------------------------------
Confidence                              113333333332210                                               


Q ss_pred             ccccCchhhhhccccccCCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccccccc-cchHHHH---HHh
Q 018716          250 RKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-NNAARHL---RSL  325 (351)
Q Consensus       250 r~ls~~~~W~~~~e~~~~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfgv-~gg~~~F---~~~  325 (351)
                                     ......+|+++....++.....+.++.-+++.|+ |+|.++++.|...... +.....|   .+.
T Consensus       136 ---------------~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~~k~~~~d~~~~~~~~~~e~~~~  199 (230)
T d1g8sa_         136 ---------------EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIAIKARSIDVTKDPKEIFKEQKEI  199 (230)
T ss_dssp             ---------------GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEEGGGTCSSSCHHHHHHHHHHH
T ss_pred             ---------------ccccccceeEEeeccccchHHHHHHHHHHHHhcc-cCceEEEEeeccccCCCCCHHHHHHHHHHH
Confidence                           0123456676666678888888888999999997 8999888865543322 2222333   456


Q ss_pred             hhhcCc
Q 018716          326 VDEEGI  331 (351)
Q Consensus       326 ve~~G~  331 (351)
                      +++.|+
T Consensus       200 L~~aGF  205 (230)
T d1g8sa_         200 LEAGGF  205 (230)
T ss_dssp             HHHHTE
T ss_pred             HHHcCC
Confidence            667786

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=2e-07  Score=85.11  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      ..+|.+|||+|||+|..+++++. .| ..+|+..|.++++++.
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~  125 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK  125 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHH
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            46899999999999999988875 23 3589999999999854

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.61  E-value=5.2e-08  Score=91.77  Aligned_cols=49  Identities=24%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      .+|++||++.||+|..|+.++..|+.+|+..|.++..++. .+.|+.+|.
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~-a~~N~~~n~  191 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRAL-SLAHFEANH  191 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHH-HHHHHHHTT
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHH-HHHHHHHhc
Confidence            4799999999999999999998899999999999999865 456665553

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.3e-08  Score=88.30  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             CCCCccEEEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEeccc-------------cccc-----cchHHHHHHhhhh
Q 018716          267 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-------------YVGF-----NNAARHLRSLVDE  328 (351)
Q Consensus       267 ~~~~~DlILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~-------------yfgv-----~gg~~~F~~~ve~  328 (351)
                      ...+||+|++..++|+.+..+.+++-+.++|+ |+|.+++.....             .|..     .-...++.+.+++
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  198 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN  198 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHH
T ss_pred             CCCceeEEEEccceecCCCHHHHHHHHHhhCC-CCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHH
Confidence            46899999999999999999999999999997 899877763110             0100     1145667788888


Q ss_pred             cCc
Q 018716          329 EGI  331 (351)
Q Consensus       329 ~G~  331 (351)
                      .|+
T Consensus       199 ~G~  201 (280)
T d1jqea_         199 LGL  201 (280)
T ss_dssp             HTC
T ss_pred             CCC
Confidence            886

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=6.6e-08  Score=88.58  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=34.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+++|||+|||+|..++.++..|. +|++.|+|+.||+.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~   93 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKY   93 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHH
Confidence            568999999999999999998886 89999999999965

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=1.4e-08  Score=95.55  Aligned_cols=47  Identities=34%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .+|++|||++||+|..++.++. |+.+|+..|+|+.+++. .+.|+.+|
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~-a~~n~~~n  190 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRR-AEENARLN  190 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHH-HHHHHHHc
Confidence            4799999999999999998875 55699999999999965 35565555

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.5e-07  Score=81.02  Aligned_cols=42  Identities=7%  Similarity=0.158  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          114 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       114 ~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      ...+|++|||+|||+|+..+..+..+..+|+++|+++.|++.
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~   92 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQE   92 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHH
Confidence            357899999999999988766554455699999999999864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.40  E-value=6.3e-07  Score=77.35  Aligned_cols=55  Identities=25%  Similarity=0.256  Sum_probs=45.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      .+...|...       +.+.+||||-||||.+|+-|+..||++|++.|.+...++     .++.|++
T Consensus        33 alFn~l~~~-------~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~-----~ik~Ni~   87 (183)
T d2ifta1          33 TLFNWLMPY-------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVAN-----QLKKNLQ   87 (183)
T ss_dssp             HHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHH-----HHHHHHH
T ss_pred             HHHHHhhhh-------cccceEeecccCccceeeeeeeecceeeEEeecccchhh-----hHhhHHh
Confidence            455556544       578999999999999999999999999999999999874     4566655

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.39  E-value=4e-06  Score=73.82  Aligned_cols=63  Identities=16%  Similarity=0.072  Sum_probs=45.5

Q ss_pred             CcccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716           91 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        91 G~k~Weas~-~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      +...|+--. -|+..+....  ....-+|.+|||||||+|.....++. .+..+|++.|+++.|++.
T Consensus        31 ~~r~w~p~rsklaa~i~~g~--~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~   95 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGH--RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK   95 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSC--CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH
T ss_pred             ceeeeCCcchHHHHHHhccc--cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence            346787432 4555555431  12345789999999999998887774 455689999999999965

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=2.8e-06  Score=77.76  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~  155 (351)
                      ..+|++|||+|||+|..++.+|.. | ..+|+..|+++++++.
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~  143 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL  143 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence            468999999999999999988863 3 3589999999999854

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=2.6e-06  Score=78.06  Aligned_cols=47  Identities=30%  Similarity=0.350  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~-G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      ..+|++|||+|||+|..++.+|.. | ..+|+..|.++++++     +.+.|..
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~-----~Ar~n~~  142 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAE-----HARRNVS  142 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHH-----HHHHHHH
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHH-----HHHHhhh
Confidence            368999999999999999998863 4 358999999999985     3455554

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.3e-06  Score=79.28  Aligned_cols=40  Identities=23%  Similarity=0.164  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~  155 (351)
                      .++.+|||+|||+|..+..++..+ ..++++.|+++.+++.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~  123 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA  123 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhh
Confidence            467899999999999998887654 3489999999998853

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.36  E-value=1.5e-06  Score=81.50  Aligned_cols=48  Identities=27%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      -+++|||+|.||||..++.++..|+ +|+..|.++.+++. .+.|+.+|.
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~-a~~N~~ln~  178 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW-AKENQVLAG  178 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH-HHHHHHHHT
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHH-HHHhhhhhc
Confidence            4789999999999999999998888 79999999999965 456666663

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.25  E-value=1.3e-05  Score=72.18  Aligned_cols=127  Identities=18%  Similarity=0.174  Sum_probs=81.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 018716          117 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  195 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~~~  195 (351)
                      ..++|||+|||+|...+.+++.- ..++++.|+ ++++     +..+.++...                 .+..++.+..
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-----~~a~~~~~~~-----------------~~~~ri~~~~  137 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-----ERARRRFADA-----------------GLADRVTVAE  137 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----HHHHHHHHHT-----------------TCTTTEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-----HHHHHHHhhc-----------------CCcceeeeee
Confidence            34799999999999998888642 348999998 5565     3344454421                 1223455443


Q ss_pred             ccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccEEE
Q 018716          196 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  275 (351)
Q Consensus       196 gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~DlIL  275 (351)
                      +|--                              +                                   ....+||+|+
T Consensus       138 ~d~~------------------------------~-----------------------------------~~p~~~D~v~  152 (256)
T d1qzza2         138 GDFF------------------------------K-----------------------------------PLPVTADVVL  152 (256)
T ss_dssp             CCTT------------------------------S-----------------------------------CCSCCEEEEE
T ss_pred             eecc------------------------------c-----------------------------------cccccchhhh
Confidence            3210                              0                                   1234699999


Q ss_pred             EeccccCc--cCHHHHHHHHHHHcCCCCeEEEEEeccc------------cc---------cccchHHHHHHhhhhcCce
Q 018716          276 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN------------YV---------GFNNAARHLRSLVDEEGIF  332 (351)
Q Consensus       276 asDviY~~--~~~~~L~~~l~~~L~~p~gv~ylA~K~~------------yf---------gv~gg~~~F~~~ve~~G~~  332 (351)
                      .+.++++-  +....+++-+.+.|+ |+|+++|.-...            ++         |...+..+|.+++++.|+-
T Consensus       153 ~~~vLh~~~d~~~~~lL~~i~~~Lk-pgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~  231 (256)
T d1qzza2         153 LSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA  231 (256)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred             ccccccccCcHHHHHHHHHHHhhcC-CcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence            99999754  334567777888897 899888763210            11         1112567899999999973

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.25  E-value=9e-06  Score=72.65  Aligned_cols=63  Identities=19%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716           92 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus        92 ~k~Weas-~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      .+.|+-- --|+..|..-+. ....-+|.+|||||||+|.....++. .| ..+|++.|+++.+++.
T Consensus        48 ~R~w~p~rSKlaa~i~~~l~-~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~  113 (227)
T d1g8aa_          48 YRIWNPNRSKLGAAIMNGLK-NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE  113 (227)
T ss_dssp             EEECCTTTCHHHHHHHTTCC-CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             EEEECCCccHHHHHHHcccc-ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence            5678742 145555554432 12345899999999999999988875 34 3589999999999865

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=6.4e-06  Score=72.47  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~  155 (351)
                      .-+|.+|||+|||+|..+..+++ .| ..+|+..|+++++++.
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~  115 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI  115 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHH
Confidence            45789999999999999988875 34 3489999999998854

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.3e-05  Score=73.56  Aligned_cols=49  Identities=22%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      ..+|.+|||+|||+|..++.+|. .| ..+|+..|+++++++. .+.|++.-
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~-A~~n~~~~  146 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL-AKKNYKHW  146 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH-HHHHHHHH
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHH-HHHHHHHh
Confidence            46899999999999999998885 34 3489999999999865 35565543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.7e-05  Score=68.54  Aligned_cols=67  Identities=9%  Similarity=-0.010  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhhhhcC-CCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHhhhHHHHHHHH
Q 018716           98 SIDLVNVLKHEIRDG-QLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANL  165 (351)
Q Consensus        98 s~~L~~~L~~~~~~~-~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~  165 (351)
                      -.....++.+..... .......+|||+|||+|..++.++. ....+++++|+++++++. ...|++.|.
T Consensus        41 r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~-A~~N~~~n~  109 (250)
T d2h00a1          41 RLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY-AKKNVEQNN  109 (250)
T ss_dssp             HHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH-HHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHH-HHHHHHHhC
Confidence            344455555443211 1123456999999999999988774 223589999999999965 567776663

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.2e-06  Score=73.33  Aligned_cols=47  Identities=26%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLA  163 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~l  163 (351)
                      -+|.+|||+|||+|..+..++. .| ..+|+..|+++++++. .+.|++.
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~-a~~~l~~  123 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD-SVNNVRK  123 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH-HHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHH-HHHhccc
Confidence            5789999999999988876664 44 3489999999999865 3455543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=2.1e-05  Score=68.99  Aligned_cols=38  Identities=13%  Similarity=-0.122  Sum_probs=31.3

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      +..|||||||+|-..+.+|.. ....+++.|+++.+++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~   68 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   68 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHH
Confidence            458999999999998887764 34589999999998843

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.3e-05  Score=74.82  Aligned_cols=52  Identities=15%  Similarity=0.095  Sum_probs=39.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .+.+.+.+..    ..-++.+|||||||+|-+.+.+++ .+..++++.|+++.+++.
T Consensus       138 ~~~~~~~~~~----~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~  190 (328)
T d1nw3a_         138 DLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY  190 (328)
T ss_dssp             HHHHHHHHHS----CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHH
T ss_pred             HHHHHHHHHc----CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            4444444442    234688999999999999998775 567789999999999865

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.98  E-value=3.8e-05  Score=67.25  Aligned_cols=38  Identities=11%  Similarity=-0.073  Sum_probs=31.3

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      +..|||||||+|-..+.+|.. ....+++.|+++.++..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~   70 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY   70 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHH
Confidence            457999999999988887764 35689999999998854

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.89  E-value=3.7e-05  Score=68.48  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .-+|.+|||+|||+|..+..++..+ .+|+..|+++++++.
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~  107 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNY  107 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHH
Confidence            3578899999999999988877765 489999999988754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=0.00016  Score=63.43  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+.++|||+|||+|.-++.++..  ...+|+..|.++++++     +.+.|+..+                 .+..+|++
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~-----~a~~~~~~~-----------------gl~~~i~l  112 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAA-----ITQQMLNFA-----------------GLQDKVTI  112 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHH-----HHHHHHHHH-----------------TCGGGEEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHH-----HHHHHHHHc-----------------CCCcccee
Confidence            36689999999999999988752  2358999999998874     344455432                 13346888


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..||..+.   +..                    +                                  ........||+
T Consensus       113 ~~Gd~~e~---l~~--------------------l----------------------------------~~~~~~~~~D~  135 (214)
T d2cl5a1         113 LNGASQDL---IPQ--------------------L----------------------------------KKKYDVDTLDM  135 (214)
T ss_dssp             EESCHHHH---GGG--------------------H----------------------------------HHHSCCCCEEE
T ss_pred             eecccccc---ccc--------------------h----------------------------------hhcccccccce
Confidence            77765442   100                    0                                  00013467898


Q ss_pred             EEEeccccCccCHHHHHHHHHH--HcCCCCeEEEEEeccccccccchHHHHHHhhhhcCceeeEEee
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  338 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~--~L~~p~gv~ylA~K~~yfgv~gg~~~F~~~ve~~G~~~~~~v~  338 (351)
                      |+.-   .+.+.+.....++..  +|+ |+|++ ++---.+.    |...|++++++..-+......
T Consensus       136 ifiD---~~~~~~~~~~~l~~~~~lLk-pGGvI-v~Ddvl~~----g~~~~~~~vr~~~~~~~~~~~  193 (214)
T d2cl5a1         136 VFLD---HWKDRYLPDTLLLEKCGLLR-KGTVL-LADNVIVP----GTPDFLAYVRGSSSFECTHYS  193 (214)
T ss_dssp             EEEC---SCGGGHHHHHHHHHHTTCEE-EEEEE-EESCCCCC----CCHHHHHHHHHCTTEEEEEEE
T ss_pred             eeec---ccccccccHHHHHHHhCccC-CCcEE-EEeCcCCC----CChHHHHHHhccCceeehhhh
Confidence            8753   345555554444433  465 77764 44332222    457888888887766665543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00031  Score=61.99  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~--Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+-++|||+|||+|.-++.++..  ...+|+..|.+++..+.     .+.|+..+                 .+..++++
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~-----A~~~~~~a-----------------g~~~~i~~  115 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPEL-----GRPLWRQA-----------------EAEHKIDL  115 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHH-----HHHHHHhc-----------------CccceEEE
Confidence            46799999999999999998852  13489999999987643     44555432                 13346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..||-.+.-  .+                     +           .                       .......||+
T Consensus       116 ~~Gda~e~l--~~---------------------~-----------~-----------------------~~~~~~~fD~  138 (219)
T d2avda1         116 RLKPALETL--DE---------------------L-----------L-----------------------AAGEAGTFDV  138 (219)
T ss_dssp             EESCHHHHH--HH---------------------H-----------H-----------------------HTTCTTCEEE
T ss_pred             EEeehhhcc--hh---------------------h-----------h-----------------------hhcccCCccE
Confidence            666543310  00                     0           0                       0013568999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEecccccc-c---------cchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-F---------NNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K~~yfg-v---------~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |.. |.  +.+.+...++.+.++|+ |+|++.+-.- ...| +         ..++++|.+.++++--|.+.++
T Consensus       139 ifi-D~--dk~~y~~~~~~~~~lL~-~GGvii~Dn~-l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~ll  207 (219)
T d2avda1         139 AVV-DA--DKENCSAYYERCLQLLR-PGGILAVLRV-LWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL  207 (219)
T ss_dssp             EEE-CS--CSTTHHHHHHHHHHHEE-EEEEEEEECC-SGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEE-eC--CHHHHHHHHHHHHHHhc-CCcEEEEeCC-cccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            987 32  45677888888888897 8888776321 1111 0         1247889999888766666554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.59  E-value=0.00013  Score=64.73  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-c---C---CCEEEEEcCChHHHHhhhHHHHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-K---G---AGTVHFQDLSAETIRCTTVPNVLAN  164 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~---G---a~~V~~TD~s~~vL~~~t~~Nv~lN  164 (351)
                      .++.+|||+|||||..+..++. .   |   ..+|+..|+++++++. ...|+..+
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~-a~~~l~~~  133 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR-SKANLNTD  133 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHH-HHHhhhhc
Confidence            5789999999999998877664 2   2   1379999999999865 35566544

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=0.00019  Score=63.27  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .-++.+|||+|||||..+..++. .| .+|+..|.++++++.
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~  116 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEF  116 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHH
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHH
Confidence            45788999999999999887774 56 479999999988754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.00024  Score=68.44  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHHh
Q 018716          115 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       115 ~~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~~  155 (351)
                      .-+|.+|||||||+|-+.+.+|+ .|.++|++.|+++.+++.
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~  255 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDL  255 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            35789999999999999988775 577799999999999865

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00038  Score=61.02  Aligned_cols=38  Identities=24%  Similarity=0.495  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCEEEEEcCChHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETI  153 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~G-a~~V~~TD~s~~vL  153 (351)
                      +.+++|+|+|+|.|+||+.+|... ..+|++.|-+..=.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~  102 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV  102 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHH
Confidence            467899999999999999988643 46899999988654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.44  E-value=0.00071  Score=59.95  Aligned_cols=140  Identities=14%  Similarity=0.196  Sum_probs=87.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cC-CCEEEEEcCChHHHHhhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  193 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~G-a~~V~~TD~s~~vL~~~t~~Nv~lN~~~~~~~~~~~~~s~~~p~~~~l~~~v~~  193 (351)
                      .+-++|||+|+++|.-++.++. .+ ..+|+..|.+++..+.     .+.|+..+                 .+..++++
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~-----A~~~~~~~-----------------g~~~~i~~  115 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL-----GLPVIKKA-----------------GVDHKIDF  115 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH-----HHHHHHHT-----------------TCGGGEEE
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHH-----HHHHHHHh-----------------ccccceee
Confidence            3678999999999999998875 22 3589999999987643     23333321                 12346777


Q ss_pred             eeccCCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhccccccCCCCccE
Q 018716          194 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  273 (351)
Q Consensus       194 ~~gdW~~~~~~l~~~~~d~~~~~~~~~~~f~~~df~~~~~s~~~~~i~~~~~~~~~r~ls~~~~W~~~~e~~~~~~~~Dl  273 (351)
                      ..|+..+.   +..+                                                     .......+.||+
T Consensus       116 ~~g~a~~~---L~~l-----------------------------------------------------~~~~~~~~~fD~  139 (227)
T d1susa1         116 REGPALPV---LDEM-----------------------------------------------------IKDEKNHGSYDF  139 (227)
T ss_dssp             EESCHHHH---HHHH-----------------------------------------------------HHCGGGTTCBSE
T ss_pred             eehHHHHH---HHHH-----------------------------------------------------HhccccCCceeE
Confidence            76655331   1100                                                     000013568999


Q ss_pred             EEEeccccCccCHHHHHHHHHHHcCCCCeEEEEEec----c-----------ccccccchHHHHHHhhhhcCceeeEEe
Q 018716          274 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK----K-----------NYVGFNNAARHLRSLVDEEGIFGAHLI  337 (351)
Q Consensus       274 ILasDviY~~~~~~~L~~~l~~~L~~p~gv~ylA~K----~-----------~yfgv~gg~~~F~~~ve~~G~~~~~~v  337 (351)
                      |.. |.  +...+..-++.+..+|+ |+|++.+=.-    +           +.-.....+++|.+.+.++.-|.+.++
T Consensus       140 iFi-Da--~k~~y~~~~e~~~~ll~-~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~ll  214 (227)
T d1susa1         140 IFV-DA--DKDNYLNYHKRLIDLVK-VGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICML  214 (227)
T ss_dssp             EEE-CS--CSTTHHHHHHHHHHHBC-TTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEE
T ss_pred             EEe-cc--chhhhHHHHHHHHhhcC-CCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            987 53  55778888888888897 8888766310    0           000011246778888887765665543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.0005  Score=63.77  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=33.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      ..++||.||.|.|.....+++. +..+|++.|++++|++.+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a  117 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVA  117 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHH
Confidence            4689999999999877777654 456999999999999753

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00097  Score=61.71  Aligned_cols=55  Identities=16%  Similarity=0.085  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716           96 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus        96 eas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .....|.+.+.+..    ...++.+||||-||+|..|+.++..+ ++|++.|.++..++.
T Consensus       195 ~~~e~l~~~v~~~~----~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~  249 (358)
T d1uwva2         195 GVNQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEK  249 (358)
T ss_dssp             HHHHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHH
T ss_pred             hhhhHHHHHHHHhh----ccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHH
Confidence            34455555555543    23467899999999999999998754 599999999998854

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.0017  Score=58.95  Aligned_cols=40  Identities=20%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      -+.++||-||+|.|.....++..+..+|++.|+++.|++.
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~  110 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMV  110 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHH
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHH
Confidence            3568999999999988877776666789999999999864

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.94  E-value=0.0044  Score=54.99  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=46.4

Q ss_pred             CccEEEEeccccCccC--HHHHHHHHHHHcCCCCeEEEEEeccc--------------cc---------cccchHHHHHH
Q 018716          270 GYDVILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN--------------YV---------GFNNAARHLRS  324 (351)
Q Consensus       270 ~~DlILasDviY~~~~--~~~L~~~l~~~L~~p~gv~ylA~K~~--------------yf---------gv~gg~~~F~~  324 (351)
                      +.|+|+.+-++++-+.  ...+++-+.+.|+ |+|+++|+---.              ++         |...+..+|.+
T Consensus       139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~-pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~  217 (244)
T d1fp1d2         139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK  217 (244)
T ss_dssp             CEEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred             cceEEEEehhhhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHH
Confidence            4499999999977543  5567777778886 899988873110              11         11124678999


Q ss_pred             hhhhcCceeeEEee
Q 018716          325 LVDEEGIFGAHLIK  338 (351)
Q Consensus       325 ~ve~~G~~~~~~v~  338 (351)
                      ++++.|+=.++++.
T Consensus       218 ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         218 LSKLSGFSKFQVAC  231 (244)
T ss_dssp             HHHHTTCSEEEEEE
T ss_pred             HHHHcCCCceEEEe
Confidence            99999975666553

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.88  E-value=0.00058  Score=58.57  Aligned_cols=43  Identities=16%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             CCCCccEEEEecccc--CccCHHHHHHHHHHHcCCCCeEEEEEecc
Q 018716          267 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLATKK  310 (351)
Q Consensus       267 ~~~~~DlILasDviY--~~~~~~~L~~~l~~~L~~p~gv~ylA~K~  310 (351)
                      ..++||+|++-.++-  +++....+++.+..+|+ |+|..+++..-
T Consensus       129 ~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~-pGG~L~lG~sE  173 (193)
T d1af7a2         129 VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFAGHSE  173 (193)
T ss_dssp             CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEECTTC
T ss_pred             CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC-CCcEEEEecCc
Confidence            357899999999764  44666889999999997 99998888644

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.75  E-value=0.023  Score=47.64  Aligned_cols=50  Identities=20%  Similarity=0.128  Sum_probs=36.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCEEEEEcCChHHH
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETI  153 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~--~Ga~~V~~TD~s~~vL  153 (351)
                      .++++|.+..    ...++.+|||.|||+|-..+.+..  .....+++.|+++..+
T Consensus         6 ~i~~~m~~l~----~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           6 EVVDFMVSLA----EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHHHHC----CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred             HHHHHHHHhc----CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence            4677777763    234788999999999976555442  3346799999998654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.0075  Score=55.22  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=32.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      ..++||-||.|.|...-.+++. +..+|++.|+++.|++.+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a  129 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAA  129 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHH
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHH
Confidence            4689999999999776666653 457899999999999764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.0021  Score=57.39  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHH
Q 018716          117 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETI  153 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL  153 (351)
                      .+++|+|+|+|.|+||+.++. ....++++.|-+..=.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~  107 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI  107 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH
Confidence            467999999999999999885 4567899999887544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.68  E-value=0.018  Score=50.86  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCCh
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSA  150 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~  150 (351)
                      .++|+|+|||+|...+.++.. ...++++.|..+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  114 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ  114 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH
Confidence            468999999999999888753 335899999853

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.013  Score=53.30  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=33.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      ..++||-||-|.|...-.+.+. +..+|++.|++++|++.+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a  118 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS  118 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHH
Confidence            4589999999999888777764 567999999999999753

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.59  E-value=0.014  Score=53.00  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH----cC--CCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACL----KG--AGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~----~G--a~~V~~TD~s~~vL~~  155 (351)
                      ..+.+|||.+||+|...+.+..    .+  ..++++.|+++.+++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~  161 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISL  161 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHH
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHH
Confidence            3567999999999988777652    11  2379999999998854

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.55  E-value=0.0022  Score=60.77  Aligned_cols=62  Identities=27%  Similarity=0.312  Sum_probs=47.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCEEEEEcCChHHHHhhhHHHHHHHHH
Q 018716           97 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLE  166 (351)
Q Consensus        97 as~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa-~~Ga~~V~~TD~s~~vL~~~t~~Nv~lN~~  166 (351)
                      -..+|+-.+.+.       +++++|||..||||+-||..+ ..|+.+|++.|+|+..++. ...|+++|..
T Consensus        32 ~NRDlsvl~~~~-------~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~-i~~N~~lN~~   94 (375)
T d2dula1          32 LNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYEL-MKRNVMLNFD   94 (375)
T ss_dssp             HHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHH-HHHHHHHHCC
T ss_pred             hhhHHHHHHHHH-------hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHH-HHHHHHhcCc
Confidence            344554444444       478899999999999999655 4678899999999999975 5678887753

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.38  E-value=0.0031  Score=55.86  Aligned_cols=38  Identities=11%  Similarity=0.115  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      .++.+|||+|||+|..+..++..++ +|++.|+++.+++
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~   57 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCK   57 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHH
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHH
Confidence            5789999999999999999987764 8999999998764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.36  E-value=0.028  Score=50.60  Aligned_cols=39  Identities=15%  Similarity=0.081  Sum_probs=33.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++||-||-|.|...-.+.+. +..+|++.|+++.|++.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~  114 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEY  114 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHH
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHH
Confidence            5689999999999988887763 56799999999999865

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.16  E-value=0.015  Score=52.90  Aligned_cols=40  Identities=13%  Similarity=0.112  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHhh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  156 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~~  156 (351)
                      .-++||-||-|.|.....+++. +..+|++.|++++|++.+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~  120 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS  120 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHH
Confidence            4579999999999887777764 557899999999998653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.86  E-value=0.044  Score=47.89  Aligned_cols=33  Identities=18%  Similarity=-0.039  Sum_probs=27.5

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCCh
Q 018716          118 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSA  150 (351)
Q Consensus       118 ~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~  150 (351)
                      .++|||+|||+|..++.++.. ...++++.|..+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH  115 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence            468999999999999988863 345899999876

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.48  E-value=0.042  Score=50.47  Aligned_cols=39  Identities=21%  Similarity=0.101  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHHh
Q 018716          117 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  155 (351)
Q Consensus       117 ~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~~  155 (351)
                      ..++||-||.|.|.....+++. +..+|++.|++++|++.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~  145 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDV  145 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHH
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHH
Confidence            4679999999999888777764 45799999999999864

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.009  Score=53.40  Aligned_cols=39  Identities=10%  Similarity=0.075  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHHh
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  155 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~~  155 (351)
                      .++..|||+|||+|.++..++..+ ++|++.|+++.+++.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~   58 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAAR   58 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHH
Confidence            468899999999999999988765 589999999987743

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=94.83  E-value=0.0032  Score=56.21  Aligned_cols=38  Identities=16%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      .++.+|||+|||+|..+..++..+ .+|++.|+++.+++
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~   65 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFN   65 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSS
T ss_pred             CCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchh
Confidence            467899999999999998888776 48999999997763

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.045  Score=49.39  Aligned_cols=38  Identities=21%  Similarity=0.105  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~Ga~~V~~TD~s~~vL~  154 (351)
                      .++..|||+|+|+|.++..++..++ +|++.++++.++.
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~   57 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVA   57 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhH
Confidence            4678999999999999999988764 8999999998774

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.60  E-value=0.12  Score=43.75  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~-~Ga~~V~~TD~s~~vL~  154 (351)
                      .++..|||.+||+|..+..++. ....+|++.|.+++|++
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~   61 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLR   61 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHH
Confidence            5788999999999998877765 33458999999999984

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=90.81  E-value=0.7  Score=42.99  Aligned_cols=52  Identities=19%  Similarity=0.172  Sum_probs=37.4

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc----C----------CCEEEEEcCChHHHHh
Q 018716          100 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G----------AGTVHFQDLSAETIRC  155 (351)
Q Consensus       100 ~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~~----G----------a~~V~~TD~s~~vL~~  155 (351)
                      .++++|...+.    ...+.+|+|-.||+|..-+.+...    +          ...++++|+++.+...
T Consensus       149 ~Iv~~mv~ll~----~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~l  214 (425)
T d2okca1         149 PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  214 (425)
T ss_dssp             HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             hhhHhhheecc----CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHH
Confidence            56677766541    235789999999999888777531    1          1259999999988754

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.35  E-value=0.25  Score=44.83  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGtGL~gl~aa~~-Ga~~V~~TD~s~~vL~  154 (351)
                      .++..|||+|.|.|..+..+... ++++|++.+.++..++
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~   81 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK   81 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence            46789999999999999887754 5679999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.81  E-value=0.77  Score=38.24  Aligned_cols=39  Identities=28%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcccC-CHHHHHHH-HcCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGt-GL~gl~aa-~~Ga~~V~~TD~s~~vL~  154 (351)
                      -+|.+||-+|||. |+..+.++ ..|+.+|+.+|.+++-++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~   64 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA   64 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhH
Confidence            5788999999985 55555555 368889999999997664

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=82.25  E-value=0.66  Score=37.63  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHHH
Q 018716          116 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIR  154 (351)
Q Consensus       116 ~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL~  154 (351)
                      .+|.+||=+|||. |+..+.+++ .|+++|+++|.+++-++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~   67 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK   67 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccc
Confidence            4789999999873 444444443 68879999999997654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=81.37  E-value=0.83  Score=37.31  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHHH-cCCCEEEEEcCChHHH
Q 018716          115 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI  153 (351)
Q Consensus       115 ~~~~krVLELGcGt-GL~gl~aa~-~Ga~~V~~TD~s~~vL  153 (351)
                      .-+|.+||=+|||. |+..+.+++ .|++.|+.+|.+++-+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~   66 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF   66 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH
Confidence            35788999999985 777777664 6888999999999644

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=80.65  E-value=1.2  Score=38.57  Aligned_cols=58  Identities=14%  Similarity=-0.025  Sum_probs=38.9

Q ss_pred             CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH----cC-CCEEEEEcCChH
Q 018716           89 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL----KG-AGTVHFQDLSAE  151 (351)
Q Consensus        89 ~gG~k~Weas~~L~~~L~~~~~~~~~~~~~krVLELGcGtGL~gl~aa~----~G-a~~V~~TD~s~~  151 (351)
                      |-|.++|....+++-+ ...+    ...+.++|||+|++.|.-.+..+.    .+ ..+|+..|+++.
T Consensus        57 w~G~p~~k~p~d~~~~-~eli----~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~  119 (232)
T d2bm8a1          57 WRGLRMLKDPDTQAVY-HDML----WELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS  119 (232)
T ss_dssp             ETTEECCSCHHHHHHH-HHHH----HHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred             ccceecccCHHHHHHH-HHHH----HHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence            3467788777666555 2222    125788999999999966554431    22 458999999874