Citrus Sinensis ID: 018722

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYINRK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccccccccEEHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEcccccEEEEEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccEcccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEcEEEEEccccccEEEEccccccEEEEEEcccccHHcccccccccccHcccccHHHHcccccEEEEEEEccccccccEEEEEEcccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MLLYLIITCFSLILFLnclalkplppwarpteLRLLSLCFWKeisffsipsslknslnittiiipspklsfkHMMSTSndhveevsggaemsvldLPELVLECILeklppsglcnMAAVCSSLRDRCMSDHLWEKHMKqkwgrivgpaAYREWQWHLasrkdsthlkqGKQRLWMKLFSFVRSFSWVrskvhdtskqttttrlpvdsnsIMSWYLALETgrfwfpaqvynrenghvGFMLSCYDAElsydqstdtfqarypphgrrpiaiecgvpwerlraapvdtsphdlhisdclndlhpgdhieiqwrrnkefpygwwyGVVGHlescdgnenfchchnsdyryinrk
Flexible Loop (DISEMBL)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFsipsslknslNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLasrkdsthlkqGKQRLWMKLFSFVRSFSwvrskvhdtskqttttrlpvdsnsIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGnenfchchnsdyryinrk
Low Complexity Region (SEG)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLfsfvrsfswvrsKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYINRK
Disordered region (IsUnstruct)
*LLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSF******************EMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDT****TTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYI***
Disordered Region (DISOPRED)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIII****************************VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQW*********************LFSFVRSFSWVRSK****************SNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYINR*
Disordered Region (DISEMBL)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYINRK
Disordered Region (DISPRO)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHM*****D********AEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTH*****QRLWMKLFSFVRSFSWVRSKVHDT****TTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYINR*
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRYINRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q8RY82	371	F-box protein At2g32560 O	yes	no	0.877	0.830	0.579	1e-105
Q6NLB1	371	F-box protein At2g26850 O	no	no	0.877	0.830	0.569	2e-99
Q6NKN8	371	F-box protein At2g41170 O	no	no	0.854	0.808	0.495	3e-75

>sp|Q8RY82|FB121_ARATH F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/347 (57%), Positives = 240/347 (69%), Gaps = 39/347 (11%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLY +ITC S   F   L+L   PPWA  T+  L         SF+ I +   N+L+ T
Sbjct: 1   MLLYFLITCLSFFFFTKSLSL---PPWASETKTLL---------SFYFIKNPFMNTLHQT 48

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                SP +                    +MSVLDLPEL L+CIL+ LPPSGLC+MA VC
Sbjct: 49  KHDPASPVID-------------------QMSVLDLPELALDCILDLLPPSGLCSMARVC 89

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRK---DSTHLKQGKQRLWMKL 177
           SSLR+RC+SDHLWEKH+K KWG+I+GPAA+REWQ +++S     DS H + G      K+
Sbjct: 90  SSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGF-AKI 148

Query: 178 FSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVG 237
            S +RS S V  +  D  ++   + LP+DS+  MS YL+LETGRFWFPAQVYNRENGHVG
Sbjct: 149 ISLIRSLSSVFRE--DKQRRGYASSLPLDSS--MSCYLSLETGRFWFPAQVYNRENGHVG 204

Query: 238 FMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCL 297
           FMLSCYDAELSYD  TDTFQARYPPHGRR  AIE GV W+R+RAAP+D SPH LH+SD L
Sbjct: 205 FMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSL 264

Query: 298 NDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
            +L PGDHIEIQWRRNKEFPYGWWYG+V HLESCDG+ N CHCH S+
Sbjct: 265 KELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSE 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 237/346 (68%), Gaps = 38/346 (10%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLYL+ITC S   F         P WA  T+  LLS  F K +          NSL+  
Sbjct: 1   MLLYLLITCLSFFFFS---KSLSFPQWASKTK-NLLSFYFSKYL--------FTNSLHQI 48

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
           T  + SP L                    +MS+LDLP+L L+CILE LPPS LC MA VC
Sbjct: 49  TPDLASPVL-------------------GKMSILDLPDLPLDCILELLPPSELCTMARVC 89

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS--RKDSTHLKQGKQRLWMKLF 178
           SSLR+RC+SDHLWEKH+K KWG+I+GP+A++EWQ +L+S    DS H K     L  K+ 
Sbjct: 90  SSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGL-AKII 148

Query: 179 SFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGF 238
           S +RS S +     D  ++   + +P+DS   M++YL+LETGRFWFPAQVYNRENGHVGF
Sbjct: 149 SLMRSLSSIFRD--DDHRRRYPSSIPLDST--MNFYLSLETGRFWFPAQVYNRENGHVGF 204

Query: 239 MLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLN 298
           MLSCYDAELSYD  T+TFQARYPPHG+R IA+E  V WER+RAAPVD SPH+L++SD LN
Sbjct: 205 MLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPHNLYVSDSLN 264

Query: 299 DLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           +L PGDHIEIQWRRNKEFPYGWWY VVGH+ESCDGN N C CHNS+
Sbjct: 265 ELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHNSE 310

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/317 (49%), Positives = 205/317 (64%), Gaps = 17/317 (5%)

Query: 33  LRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMS 92
           L  +S CF   I  F I S L  S+    I   + +   K       D         +MS
Sbjct: 6   LTFISFCFSITICGFLIVSWLARSIIRNGIRTLTWRKETKRKKKNQEDE-------NKMS 58

Query: 93  VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYRE 152
           +LDLP+L L+CILEKL PS LC M +VCS LRD+C+SDHLWEKHM+ KWGR++G AA +E
Sbjct: 59  LLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQE 118

Query: 153 WQWHLAS----RKDSTHLKQGKQRLWMKLF-SFVRSFSWVRSKVHDTSKQTTTTRLPVDS 207
           W+ H+A+       S+   +  +  W   F + ++ F+W+ S     ++ +++   P+D 
Sbjct: 119 WKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAWLSSNHGCENRGSSSYLAPID- 177

Query: 208 NSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRP 267
            S+M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDA++ YD  TDTFQARY  HGRR 
Sbjct: 178 -SVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRR- 235

Query: 268 IAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGH 327
            A E  V W+RLR +  DT   DLH+SDCL+ L PGDH EIQWRR KEFPYGWW+G+VGH
Sbjct: 236 -AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVGH 294

Query: 328 LESCDGNENFCHCHNSD 344
           L++CDG +N C C + +
Sbjct: 295 LQNCDGVQN-CRCDSDE 310

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
449444853	396	PREDICTED: F-box protein At2g32560-like	0.954	0.845	0.697	1e-133
449532603	369	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.962	0.915	0.691	1e-133
225435860	396	PREDICTED: F-box protein At2g32560-like	0.951	0.843	0.671	1e-130
224106001	405	predicted protein [Populus trichocarpa]	0.962	0.834	0.674	1e-127
296083888	375	unnamed protein product [Vitis vinifera]	0.891	0.834	0.648	1e-126
449444855	368	PREDICTED: F-box protein At2g32560-like	0.874	0.834	0.659	1e-125
255585161	408	conserved hypothetical protein [Ricinus	0.917	0.789	0.685	1e-124
356501388	397	PREDICTED: F-box protein At2g32560-like	0.954	0.843	0.634	1e-123
224055285	368	f-box family protein [Populus trichocarp	0.874	0.834	0.659	1e-120
356554183	397	PREDICTED: F-box protein At2g32560-like	0.957	0.846	0.642	1e-118

>gi|449444853|ref|XP_004140188.1| PREDICTED: F-box protein At2g32560-like isoform 1 [Cucumis sativus]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/344 (69%), Positives = 273/344 (79%), Gaps = 9/344 (2%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLL   +TC S ILFL  L+LKPLP WA   E+R LS  FWKE+SFF I   +KNSL   
Sbjct: 1   MLLCFFLTCISFILFLKSLSLKPLPLWA--DEMRFLSHWFWKELSFFPIYKVIKNSLCTY 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
           T  I S K+SFK    +  ++VEE     EMSVLDLPEL LECILEKLPP  LC+MA VC
Sbjct: 59  TFCISS-KMSFKKKYLSKVENVEE---SGEMSVLDLPELALECILEKLPPDALCSMAGVC 114

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLR+RC+SDHLWEKHMK+KWG+++G AAYREWQWHLASR   ++LKQ KQ+  ++LFSF
Sbjct: 115 SSLRERCISDHLWEKHMKRKWGKVIGQAAYREWQWHLASRAGESNLKQNKQKSLIRLFSF 174

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
             S SW+RSKV++ S  T  T LPVDS  IM+WYLALETGRFWFPAQVYNRENGHVGFML
Sbjct: 175 GWSLSWIRSKVNENS-NTPRTFLPVDS--IMAWYLALETGRFWFPAQVYNRENGHVGFML 231

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAEL YD  TDTFQARYPPHGRR IAIE GV WERLR+ P+DT PHDLH+SDCLN+L
Sbjct: 232 SCYDAELCYDLRTDTFQARYPPHGRRAIAIENGVQWERLRSPPIDTPPHDLHVSDCLNEL 291

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
            PGDHIEIQWR+NK+FPYGWWYGVVGHLE+CDG+ N C CH SD
Sbjct: 292 WPGDHIEIQWRKNKDFPYGWWYGVVGHLETCDGDANHCSCHYSD 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532603|ref|XP_004173270.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At2g32560-like [Cucumis sativus]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/347 (69%), Positives = 273/347 (78%), Gaps = 9/347 (2%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLL   +TC S ILFL  L+LKPLP WA   E+R LS  FWKE+SFF I   +KNSL   
Sbjct: 1   MLLCFFLTCISFILFLKSLSLKPLPLWA--DEMRFLSHWFWKELSFFPIYKVIKNSLCTY 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
           T  I S K+SFK    +  ++VEE     EMSVLDLPEL LECILEKLPP  LC+MA VC
Sbjct: 59  TFCISS-KMSFKKKYLSKVENVEE---SGEMSVLDLPELALECILEKLPPDALCSMAGVC 114

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLR+RC+SDHLWEKHMK+KWG+++G AAYREWQWHLASR   ++LKQ KQ+  ++LFS 
Sbjct: 115 SSLRERCISDHLWEKHMKRKWGKVIGQAAYREWQWHLASRAGESNLKQNKQKSLIRLFSL 174

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
           V S SW+RSKV++ S  T  T LPVDS  IM+WYLALETGRFWFPAQVYNRENGHVGFML
Sbjct: 175 VXSLSWIRSKVNENS-NTPRTFLPVDS--IMAWYLALETGRFWFPAQVYNRENGHVGFML 231

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAEL YD  TDTFQARYPPHGRR IAIE GV WERLR+ P+DT PHDLH+SDCLN+L
Sbjct: 232 SCYDAELCYDLRTDTFQARYPPHGRRAIAIENGVQWERLRSPPIDTPPHDLHVSDCLNEL 291

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSDYRY 347
            PGDHIEIQWR+NK+FPYGWWYGVVGHLE+CDG+ N C CH S   Y
Sbjct: 292 WPGDHIEIQWRKNKDFPYGWWYGVVGHLETCDGDANHCSCHYSGEFY 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435860|ref|XP_002263423.1| PREDICTED: F-box protein At2g32560-like [Vitis vinifera]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/344 (67%), Positives = 275/344 (79%), Gaps = 10/344 (2%)

Query: 2   LLYLIITCFSLILFLNCLALKPLPPWARPTELRLLS-LCFWKEISFFSIPSSLKNSLNIT 60
           +L+ +ITCFS  L  +  +++PLP W   +E+RL S L FWKE+SFF+I  S+KNSL   
Sbjct: 1   MLFFLITCFSFFLLSHSFSIRPLPSWV--SEIRLSSSLWFWKELSFFTIYRSIKNSLFGG 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
              IPS K+SF     T    VE V  G EM +LDLPELVLECILE+LPP GLC++  VC
Sbjct: 59  FWGIPS-KMSFTE--KTPLHKVENVEVGLEMGLLDLPELVLECILERLPPEGLCSLGGVC 115

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLRDRCMSD+ W++HMK+KWGRI+G AAYREWQWH+ASRKDS  L+QGK    M+L S 
Sbjct: 116 SSLRDRCMSDYFWKRHMKEKWGRILGRAAYREWQWHMASRKDSDTLEQGKPNGLMRLLSR 175

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
               SW+RS++ +++ Q ++  +PVDS  IMSWYLALETGRFWFPAQVYNRE+GHVGFML
Sbjct: 176 FGPLSWIRSRLSNSTPQRSS--VPVDS--IMSWYLALETGRFWFPAQVYNRESGHVGFML 231

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD  TDTFQARYPPHGRR +AIE GV W+RLRA PV+T PHDLH+SDCLN+L
Sbjct: 232 SCYDAELSYDSHTDTFQARYPPHGRRTVAIENGVSWDRLRAPPVETPPHDLHMSDCLNEL 291

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           HPGDHIEIQWRRNKEFPYGWWYG+VGHLESCDGNE++C CHNS+
Sbjct: 292 HPGDHIEIQWRRNKEFPYGWWYGIVGHLESCDGNESYCRCHNSE 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106001|ref|XP_002314008.1| predicted protein [Populus trichocarpa] gi|222850416|gb|EEE87963.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/350 (67%), Positives = 269/350 (76%), Gaps = 12/350 (3%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSL--- 57
           MLLY  ITCFS ILFL  L LKPL PWA  +E+RLLS+ F K++  FS   SL+N+L   
Sbjct: 1   MLLYFFITCFSFILFLKPLPLKPLLPWA--SEIRLLSVWFLKDLFLFSYLGSLRNTLLEV 58

Query: 58  ---NITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLC 114
              NI  +     K+S           +++ +GG  MSVLDLPEL LEC+LE+LPP+GLC
Sbjct: 59  FYINIIPLKTSIKKMSLSSSARAEKSALDDETGG--MSVLDLPELALECVLERLPPAGLC 116

Query: 115 NMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLW 174
           +MA VC+SLR+RC+SDHLWEKHMK KWGR++GPAAYREWQWHLASRKD    KQGK +  
Sbjct: 117 SMAGVCTSLRERCVSDHLWEKHMKHKWGRVIGPAAYREWQWHLASRKDLGSCKQGKPKGL 176

Query: 175 MKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENG 234
           M+L S     SW   KV   +     + LPV  +SIMSWYLALETG+FWFPAQV+NRENG
Sbjct: 177 MRLLSIFWPSSWSTPKVDPVNNSRQRSSLPV--HSIMSWYLALETGKFWFPAQVFNRENG 234

Query: 235 HVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHIS 294
           HVGFMLSCYDAEL+YD  TDTFQARYPPHGRR I+IE GVPWERLRA  VDTSPHDLHIS
Sbjct: 235 HVGFMLSCYDAELNYDPRTDTFQARYPPHGRRAISIESGVPWERLRAPSVDTSPHDLHIS 294

Query: 295 DCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           DCL+DL PGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNEN+C CHNSD
Sbjct: 295 DCLHDLLPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENYCRCHNSD 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083888|emb|CBI24276.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/344 (64%), Positives = 266/344 (77%), Gaps = 31/344 (9%)

Query: 2   LLYLIITCFSLILFLNCLALKPLPPWARPTELRLLS-LCFWKEISFFSIPSSLKNSLNIT 60
           +L+ +ITCFS  L  +  +++PLP W   +E+RL S L FWKE+SFF+I  S+KNSL   
Sbjct: 1   MLFFLITCFSFFLLSHSFSIRPLPSWV--SEIRLSSSLWFWKELSFFTIYRSIKNSL--- 55

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                                 E V  G EM +LDLPELVLECILE+LPP GLC++  VC
Sbjct: 56  ---------------------FENVEVGLEMGLLDLPELVLECILERLPPEGLCSLGGVC 94

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLRDRCMSD+ W++HMK+KWGRI+G AAYREWQWH+ASRKDS  L+QGK    M+L S 
Sbjct: 95  SSLRDRCMSDYFWKRHMKEKWGRILGRAAYREWQWHMASRKDSDTLEQGKPNGLMRLLSR 154

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
               SW+RS++ +++ Q ++  +PVDS  IMSWYLALETGRFWFPAQVYNRE+GHVGFML
Sbjct: 155 FGPLSWIRSRLSNSTPQRSS--VPVDS--IMSWYLALETGRFWFPAQVYNRESGHVGFML 210

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD  TDTFQARYPPHGRR +AIE GV W+RLRA PV+T PHDLH+SDCLN+L
Sbjct: 211 SCYDAELSYDSHTDTFQARYPPHGRRTVAIENGVSWDRLRAPPVETPPHDLHMSDCLNEL 270

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           HPGDHIEIQWRRNKEFPYGWWYG+VGHLESCDGNE++C CHNS+
Sbjct: 271 HPGDHIEIQWRRNKEFPYGWWYGIVGHLESCDGNESYCRCHNSE 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444855|ref|XP_004140189.1| PREDICTED: F-box protein At2g32560-like isoform 2 [Cucumis sativus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/344 (65%), Positives = 258/344 (75%), Gaps = 37/344 (10%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLL   +TC S ILFL  L+LKPLP WA   E+R LS  FWKE+SFF I  +++ S    
Sbjct: 1   MLLCFFLTCISFILFLKSLSLKPLPLWA--DEMRFLSHWFWKELSFFPIYKNVEES---- 54

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                                        EMSVLDLPEL LECILEKLPP  LC+MA VC
Sbjct: 55  ----------------------------GEMSVLDLPELALECILEKLPPDALCSMAGVC 86

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLR+RC+SDHLWEKHMK+KWG+++G AAYREWQWHLASR   ++LKQ KQ+  ++LFSF
Sbjct: 87  SSLRERCISDHLWEKHMKRKWGKVIGQAAYREWQWHLASRAGESNLKQNKQKSLIRLFSF 146

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
             S SW+RSKV++ S  T  T LPVDS  IM+WYLALETGRFWFPAQVYNRENGHVGFML
Sbjct: 147 GWSLSWIRSKVNENS-NTPRTFLPVDS--IMAWYLALETGRFWFPAQVYNRENGHVGFML 203

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAEL YD  TDTFQARYPPHGRR IAIE GV WERLR+ P+DT PHDLH+SDCLN+L
Sbjct: 204 SCYDAELCYDLRTDTFQARYPPHGRRAIAIENGVQWERLRSPPIDTPPHDLHVSDCLNEL 263

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
            PGDHIEIQWR+NK+FPYGWWYGVVGHLE+CDG+ N C CH SD
Sbjct: 264 WPGDHIEIQWRKNKDFPYGWWYGVVGHLETCDGDANHCSCHYSD 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585161|ref|XP_002533285.1| conserved hypothetical protein [Ricinus communis] gi|223526888|gb|EEF29096.1| conserved hypothetical protein [Ricinus communis]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/334 (68%), Positives = 253/334 (75%), Gaps = 12/334 (3%)

Query: 19  LALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSP-KLSFKHMMST 77
           L L+PLP WA  +E+RLLSL FWKE+  F    S +N+L    I    P K+S K M   
Sbjct: 18  LPLEPLPSWA--SEVRLLSLWFWKELFLFPYFGSFRNTLFKACISTRIPSKMSMKKMALI 75

Query: 78  SNDHVE-------EVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSD 130
            N  +E       E    +E+SVLDLPEL LECILEKLPP GLC+MA VC+SLR RC+SD
Sbjct: 76  CNGKLEQQQHQQAEDDEISEVSVLDLPELALECILEKLPPKGLCSMAGVCTSLRQRCLSD 135

Query: 131 HLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSK 190
           HLWE+HMKQKWG+I+GPAAYREWQ+H+ASR D    KQGKQ+  MKL S V   SW+  K
Sbjct: 136 HLWERHMKQKWGKIIGPAAYREWQFHIASRNDFGTCKQGKQKGLMKLLSIVWPPSWIIPK 195

Query: 191 VHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD 250
                     + LPVDS  IMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDA+LSYD
Sbjct: 196 DDCNIFIKQRSSLPVDS--IMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDADLSYD 253

Query: 251 QSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQW 310
              DTFQARYPPHGRR  AIE GVPWERLRA P DTSPHDLHISDCLN+L PGDHIEIQW
Sbjct: 254 PRKDTFQARYPPHGRRATAIENGVPWERLRAPPADTSPHDLHISDCLNELRPGDHIEIQW 313

Query: 311 RRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           RRNKEFPYGWWYGVVGHLESCDGNEN+C CHNSD
Sbjct: 314 RRNKEFPYGWWYGVVGHLESCDGNENYCRCHNSD 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501388|ref|XP_003519507.1| PREDICTED: F-box protein At2g32560-like [Glycine max]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/345 (63%), Positives = 259/345 (75%), Gaps = 10/345 (2%)

Query: 1   MLLYLIITCFSLILFLN-CLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNI 59
           MLLY I TC S  LFL   L+LK LP WA  +E+RL+S  F+K++S  SI    +  L +
Sbjct: 1   MLLYFI-TCISFFLFLKPILSLKSLPSWA--SEVRLISPLFYKDLSVKSISKLFRKRLWL 57

Query: 60  TTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAV 119
             +     ++  +  +   +  VE +    +MSVLDLPELVLECILEKLPP  LC MA V
Sbjct: 58  GFL----GQIPTRMSLVNKSSKVEIIEDSQDMSVLDLPELVLECILEKLPPPSLCQMAGV 113

Query: 120 CSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFS 179
           C SLR+ C+SDHLWE+HMKQKWGR++G AAYREW+WH AS+ +   L+ GKQR  ++L S
Sbjct: 114 CRSLRESCVSDHLWERHMKQKWGRVIGQAAYREWKWHAASKGNVGTLRHGKQRSLLRLVS 173

Query: 180 FVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFM 239
               FSW+R+KV   +     + LP DS  +M+WYLALETG FWFPAQVYNRENGHVGFM
Sbjct: 174 LSWPFSWMRTKVDANNSIKQQSYLPPDS--LMTWYLALETGNFWFPAQVYNRENGHVGFM 231

Query: 240 LSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLND 299
           LSCYDAELSYD  TDTFQARYPPHGRR +A+E G+PWERLRA PVDT PHDLHISDCL D
Sbjct: 232 LSCYDAELSYDPHTDTFQARYPPHGRRAVAVEHGIPWERLRAPPVDTPPHDLHISDCLYD 291

Query: 300 LHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           LHPGDH+EIQWRRNKEFPYGWWYGVVGHLE CDGNEN+C CH+SD
Sbjct: 292 LHPGDHVEIQWRRNKEFPYGWWYGVVGHLEVCDGNENYCRCHSSD 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055285|ref|XP_002298461.1| f-box family protein [Populus trichocarpa] gi|222845719|gb|EEE83266.1| f-box family protein [Populus trichocarpa]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/344 (65%), Positives = 248/344 (72%), Gaps = 37/344 (10%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLY  ITCFS +L L  L LKPLPPW   +E+RLLS  F K++  FS   SL+      
Sbjct: 1   MLLYFFITCFSFVLLLKPLPLKPLPPWT--SEMRLLSFWFLKDLLLFSYLGSLRT----- 53

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                                        EMSVLDLPEL LECILE+LPP+GLC+MA VC
Sbjct: 54  ----------------------------GEMSVLDLPELALECILERLPPAGLCSMAGVC 85

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           +SLR+RC+SDHLWEKHMKQKWGR++GPAAYREWQWHLASRKD    KQGK +   +L S 
Sbjct: 86  TSLRERCVSDHLWEKHMKQKWGRVIGPAAYREWQWHLASRKDLGSCKQGKPKGLTRLLSM 145

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
               SW   K    +     + LPV  NSIMSWYLALETG+FWFPAQV+NRENGHVGFML
Sbjct: 146 FWPSSWSTPKADPINNSKQRSSLPV--NSIMSWYLALETGKFWFPAQVFNRENGHVGFML 203

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDA LSYD  TDTFQ RYPPHGRR IA E GVPWERLRA P DTSPHDLHISDCLNDL
Sbjct: 204 SCYDANLSYDPGTDTFQVRYPPHGRRAIATESGVPWERLRAPPFDTSPHDLHISDCLNDL 263

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
            PGDHIEIQWRRNKEFPYGWWYGVVGHLE CDGNEN+C CHNSD
Sbjct: 264 RPGDHIEIQWRRNKEFPYGWWYGVVGHLELCDGNENYCRCHNSD 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554183|ref|XP_003545428.1| PREDICTED: F-box protein At2g32560-like [Glycine max]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/344 (64%), Positives = 261/344 (75%), Gaps = 8/344 (2%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLYLI     L+     L+LKPLP WA  +ELRL+S  F+K++S  SI    +N L + 
Sbjct: 1   MLLYLITCISFLLFLKPLLSLKPLPSWA--SELRLISPLFYKDLSVKSISKLFRNRLWLG 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
            +     ++S   +M  S+  VE +    +MSVLDLPELVLECILEKLPP+ LC MA VC
Sbjct: 59  FLCQIPTRMS---LMKKSSK-VENIEDSQDMSVLDLPELVLECILEKLPPASLCQMAGVC 114

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
            SLR+ C+SDHLWE+HMKQKWGRI+G AAYREW+WH+AS+ +   L+ GKQR  ++L S 
Sbjct: 115 RSLRESCVSDHLWERHMKQKWGRIIGQAAYREWKWHVASKGNVGTLRHGKQRSLLRLVSL 174

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
              FSW+R+KV   +     + LP DS  +M+WYLALETG FWFPAQVYNRENGHVGFML
Sbjct: 175 SWPFSWMRTKVDANNSIKQQSYLPPDS--LMTWYLALETGNFWFPAQVYNRENGHVGFML 232

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD   DTFQARYPPHGRR +A+E G+PWERLRA PVDT PHDLHISDC+ DL
Sbjct: 233 SCYDAELSYDPHNDTFQARYPPHGRRTVAVEHGIPWERLRAPPVDTPPHDLHISDCVYDL 292

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSD 344
           HPGDHIEIQWRRNKEFPYGWWYGVVGHLE CDGNEN+C CH+SD
Sbjct: 293 HPGDHIEIQWRRNKEFPYGWWYGVVGHLELCDGNENYCRCHSSD 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2060236	371	AT2G32560 "AT2G32560" [Arabido	0.837	0.792	0.594	5.2e-102
TAIR|locus:2039498	371	AT2G26850 "AT2G26850" [Arabido	0.849	0.803	0.583	1.6e-93
TAIR|locus:2063167	371	AT2G41170 "AT2G41170" [Arabido	0.849	0.803	0.496	6.2e-78
UNIPROTKB|F1LQ94	123	Fbxo31 "F-box only protein 31"	0.159	0.455	0.362	0.00084

TAIR|locus:2060236 AT2G32560 "AT2G32560" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
 Identities = 183/308 (59%), Positives = 220/308 (71%)

Query:    40 FWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPEL 99
             F K +S     S  K  L+     I +P ++  H   T +D    V    +MSVLDLPEL
Sbjct:    15 FTKSLSLPPWASETKTLLSF--YFIKNPFMNTLHQ--TKHDPASPVID--QMSVLDLPEL 68

Query:   100 VLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS 159
              L+CIL+ LPPSGLC+MA VCSSLR+RC+SDHLWEKH+K KWG+I+GPAA+REWQ +++S
Sbjct:    69 ALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISS 128

Query:   160 RK---DSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNSIMSWYLA 216
                  DS H + G    + K+            +  D  ++   + LP+DS+  MS YL+
Sbjct:   129 STYHLDSPHHQTGNLG-FAKIISLIRSLSSVFRE--DKQRRGYASSLPLDSS--MSCYLS 183

Query:   217 LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPW 276
             LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD  TDTFQARYPPHGRR  AIE GV W
Sbjct:   184 LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTW 243

Query:   277 ERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNEN 336
             +R+RAAP+D SPH LH+SD L +L PGDHIEIQWRRNKEFPYGWWYG+V HLESCDG+ N
Sbjct:   244 DRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHN 303

Query:   337 FCHCHNSD 344
              CHCH S+
Sbjct:   304 HCHCHLSE 311

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039498 AT2G26850 "AT2G26850" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 182/312 (58%), Positives = 220/312 (70%)

Query:    36 LSLCFW-KEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVL 94
             LS  F+ K +SF    S  KN L+       S  L    +   + D    V G  +MS+L
Sbjct:    10 LSFFFFSKSLSFPQWASKTKNLLSFYF----SKYLFTNSLHQITPDLASPVLG--KMSIL 63

Query:    95 DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQ 154
             DLP+L L+CILE LPPS LC MA VCSSLR+RC+SDHLWEKH+K KWG+I+GP+A++EWQ
Sbjct:    64 DLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQ 123

Query:   155 WHLAS--RKDSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNSIMS 212
              +L+S    DS H K     L  K+               D  ++   + +P+DS   M+
Sbjct:   124 CYLSSPYHLDSPHHKTSHLGL-AKIISLMRSLSSIFRD--DDHRRRYPSSIPLDST--MN 178

Query:   213 WYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIEC 272
             +YL+LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD  T+TFQARYPPHG+R IA+E 
Sbjct:   179 FYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEK 238

Query:   273 GVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCD 332
              V WER+RAAPVD SPH+L++SD LN+L PGDHIEIQWRRNKEFPYGWWY VVGH+ESCD
Sbjct:   239 DVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCD 298

Query:   333 GNENFCHCHNSD 344
             GN N C CHNS+
Sbjct:   299 GNLNHCQCHNSE 310

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2063167 AT2G41170 "AT2G41170" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 158/318 (49%), Positives = 203/318 (63%)

Query:    33 LRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMS 92
             L  +S CF   I  F I S L  S+    I      L+++        + E+ +   +MS
Sbjct:     6 LTFISFCFSITICGFLIVSWLARSIIRNGI----RTLTWRKETKRKKKNQEDEN---KMS 58

Query:    93 VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYRE 152
             +LDLP+L L+CILEKL PS LC M +VCS LRD+C+SDHLWEKHM+ KWGR++G AA +E
Sbjct:    59 LLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQE 118

Query:   153 WQWHLAS-----RKDSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRL-PVD 206
             W+ H+A+        S+  ++ K   W                 H    + +++ L P+D
Sbjct:   119 WKSHVATIMRCLTSSSSSSRKSKPN-WSSRFVANLKPFAWLSSNHGCENRGSSSYLAPID 177

Query:   207 SNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRR 266
             S  +M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDA++ YD  TDTFQARY  HGRR
Sbjct:   178 S--VMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRR 235

Query:   267 PIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVG 326
               A E  V W+RLR +  DT   DLH+SDCL+ L PGDH EIQWRR KEFPYGWW+G+VG
Sbjct:   236 --AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVG 293

Query:   327 HLESCDGNENFCHCHNSD 344
             HL++CDG +N C C +SD
Sbjct:   294 HLQNCDGVQN-CRC-DSD 309

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LQ94 Fbxo31 "F-box only protein 31" [Rattus norvegicus (taxid:10116)]

 Score = 92 (37.4 bits), Expect = 0.00084, P = 0.00084
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query:    86 SGGAEMSVLDLP-ELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG 142
             +G A  S+L+LP EL++E I   LP + L ++A VCS  R    +D +W +  ++++G
Sbjct:    46 AGPARCSLLELPPELLVE-IFASLPGTDLPSLAQVCSRFRRILHTDTIWRRRCREEYG 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      351       339   0.00094  116 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  300 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.73u 0.11s 28.84t   Elapsed:  00:00:01
  Total cpu time:  28.73u 0.11s 28.84t   Elapsed:  00:00:01
  Start:  Fri May 10 00:04:15 2013   End:  Fri May 10 00:04:16 2013

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031571 "mitotic G1 DNA damage checkpoint" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY82	FB121_ARATH	No assigned EC number	0.5792	0.8774	0.8301	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	1e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-05

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 91  MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMK 138
            S+LDLP+ +L  IL +L P  L  ++ V    R    S  LW+K + 
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 93  VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEK 135
           + DLP+ +L  I   L P  L  +A VC   R+    D LW +
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRR 43

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 96  LPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH 136
           LP+ +LE IL KL P  L  +  V    R    S   W K 
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.93
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.71
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.53
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.33
PF06881	109	Elongin_A: RNA polymerase II transcription factor	95.11
PF13013	109	F-box-like_2: F-box-like domain	93.45
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.08
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	85.89
KOG3926	332	consensus F-box proteins [Amino acid transport and	85.18
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	83.98

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.93  E-value=1.2e-09  Score=76.57  Aligned_cols=44  Identities=27%  Similarity=0.506  Sum_probs=40.0

Q ss_pred             CCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhh
Q 018722           94 LDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHM  137 (351)
Q Consensus        94 LDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV  137 (351)
                      .+||+|++..|+++|+|.||++++.||+.+|+.+.++.||.++.
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            58999999999999999999999999999999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.71  E-value=6.7e-09  Score=71.99  Aligned_cols=47  Identities=32%  Similarity=0.526  Sum_probs=40.9

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhh
Q 018722           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHM  137 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV  137 (351)
                      +++.+||++++..|+++|++.|+++++.||+.+|+.+.++.+|.+..
T Consensus         1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            36789999999999999999999999999999999999999998864

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.53  E-value=9.8e-08  Score=63.11  Aligned_cols=40  Identities=40%  Similarity=0.620  Sum_probs=38.7

Q ss_pred             CcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHH
Q 018722           96 LPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEK  135 (351)
Q Consensus        96 LPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWek  135 (351)
                      ||++++..|+++|++.|++++++||+.+|..+.++.+|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.78  E-value=0.0072  Score=60.50  Aligned_cols=52  Identities=25%  Similarity=0.406  Sum_probs=44.6

Q ss_pred             CCCCCcHHHHHHHHccCC-----hhhHHHHHhhcHHHHHhccCchHHHHhhhhhhcc
Q 018722           92 SVLDLPELVLECILEKLP-----PSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGR  143 (351)
Q Consensus        92 sLLDLPeelLd~ILs~LS-----P~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~  143 (351)
                      .+..||+|+|=.|+...=     -.+|-++|+||+.|+..|+.|.||...--+-|++
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~  162 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQR  162 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHH
Confidence            368999999999887654     4999999999999999999999999876655553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.016  Score=58.35  Aligned_cols=50  Identities=22%  Similarity=0.361  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHh
Q 018722           87 GGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH  136 (351)
Q Consensus        87 ~~~~~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWekl  136 (351)
                      --.+.+.-.||+|++.+|.+.|.-.||.+|+.||+.+..-+....+|..+
T Consensus        92 ~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l  141 (419)
T KOG2120|consen   92 NNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL  141 (419)
T ss_pred             cCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence            34556788999999999999999999999999999999999999999764

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=95.11  E-value=0.027  Score=46.58  Aligned_cols=60  Identities=30%  Similarity=0.496  Sum_probs=51.0

Q ss_pred             CCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhhhccc---cCccccchhh
Q 018722           93 VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRI---VGPAAYREWQ  154 (351)
Q Consensus        93 LLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~v---Lgpaa~~eWq  154 (351)
                      +.++|-.+|.-||...+|..|.++-.-|..|.+.  +|.||.+|+++..|.-   -.|...++|.
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr   66 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWR   66 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHH
Confidence            6789999999999999999999999999888765  8999999999999952   2444445773

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>PF13013 F-box-like_2: F-box-like domain

Probab=93.45  E-value=0.1  Score=44.50  Aligned_cols=44  Identities=25%  Similarity=0.435  Sum_probs=37.7

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHh
Q 018722           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH  136 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWekl  136 (351)
                      ..++|||+|+++.|+++-.+.++..+..+|+.+|.+..  ++|..+
T Consensus        20 ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~--~~~~~L   63 (109)
T PF13013_consen   20 LTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRD--HIWYLL   63 (109)
T ss_pred             cchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence            46999999999999999999999999999999987643  455544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.08  E-value=0.086  Score=53.07  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             CCCCCCcHHHHHHHHccC-ChhhHHHHHhhcHHHHHhccC
Q 018722           91 MSVLDLPELVLECILEKL-PPSGLCNMAAVCSSLRDRCMS  129 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~L-SP~DLcrmAaVCrsLRerc~S  129 (351)
                      ++.-+||+++|+.|..+| +..|+.++++||++-|.+...
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            356799999999999999 889999999999999998775

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=85.89  E-value=0.99  Score=46.54  Aligned_cols=68  Identities=25%  Similarity=0.447  Sum_probs=58.3

Q ss_pred             CCCCc----HHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhhhccc-c--Cccccchhhhhhhcc
Q 018722           93 VLDLP----ELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRI-V--GPAAYREWQWHLASR  160 (351)
Q Consensus        93 LLDLP----eelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~v-L--gpaa~~eWq~h~~~~  160 (351)
                      ...||    +++-+.||+||...|||+--.||+.-+......-+|.+++.+++... +  |-+-++.|..++-..
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~  149 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKN  149 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccC
Confidence            34688    99999999999999999999999999999999999999999998733 2  777778887766543

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=85.18  E-value=1.2  Score=44.57  Aligned_cols=65  Identities=22%  Similarity=0.371  Sum_probs=52.0

Q ss_pred             CCCCCCCCcHHHHHHHHccCC-hhhHHHHHhhcHHHHHhccCchHHHHhhhh-----hhcccc--Cccccchh
Q 018722           89 AEMSVLDLPELVLECILEKLP-PSGLCNMAAVCSSLRDRCMSDHLWEKHMKQ-----KWGRIV--GPAAYREW  153 (351)
Q Consensus        89 ~~~sLLDLPeelLd~ILs~LS-P~DLcrmAaVCrsLRerc~SD~LWeklV~~-----kwp~vL--gpaa~~eW  153 (351)
                      .+.-|.|||+|++-.||-+|| -.||..+|+|=.+|.+-...+.+|.++-+=     +..+.+  +..--.+|
T Consensus       198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dW  270 (332)
T KOG3926|consen  198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDW  270 (332)
T ss_pred             CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhH
Confidence            457799999999999999998 489999999999999999999999987542     333222  44444667

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=83.98  E-value=0.56  Score=48.96  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhhhccc
Q 018722           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRI  144 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~v  144 (351)
                      --+..||.|+.-.||.+|++.+|+++++||+..++.+..|..|-+...+.-+..
T Consensus       106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~  159 (537)
T KOG0274|consen  106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRL  159 (537)
T ss_pred             chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccC
Confidence            358899999999999999999999999999999999999999998887776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 67/231 (29%)

Query: 11  SLILFLNCLALKP--LPPWARPTELRLLSLC------------FWKEISFFSIPSSLKNS 56
              L L  L  +P  LP     T  R LS+              WK ++   + + +++S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 57  LNITT-----------------IIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPEL 99
           LN+                     IP+  LS    +   +    +V     M V++  +L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDV-----MVVVN--KL 411

Query: 100 VLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMK-----------QKWGRIVGPA 148
               ++EK P     ++ ++   L  +   ++ +  H                  I    
Sbjct: 412 HKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 149 -AYREWQWHLASRKDSTHLKQGKQRLWMKLFS--FVRSFSWVRSKV-HDTS 195
             Y  +  H+       HLK  +    M LF   F+  F ++  K+ HD++
Sbjct: 470 DQY--FYSHIGH-----HLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDST 512

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 50/287 (17%), Positives = 95/287 (33%), Gaps = 64/287 (22%)

Query: 11  SLILFLNCLALKPLPPWA----RPTELRLLSLCFWKEISFFSIPSSLKNSLNITTII--- 63
           +++  L  L  +  P W       + ++L       E+         +N L    ++   
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLN 252

Query: 64  IPSPKL--SF----KHMMSTSNDHVEEVSGGAEMSVLDLPEL---------------VLE 102
           + + K   +F    K +++T    V +    A  + + L                   L+
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 103 CILEKLPPSG------LCNMAAVCSSLRDR-CMSDHLWEKHMKQKWGRIVG-------PA 148
           C  + LP           ++ A   S+RD     D+ W+     K   I+        PA
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPA 369

Query: 149 AYREWQWHLASRKDSTHLKQGK-QRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDS 207
            YR+    L+    S H+       +W  +         V   V+   K +   + P +S
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQPKES 424

Query: 208 N-SIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQST 253
             SI S YL L+        ++ N    H   ++  Y+   ++D   
Sbjct: 425 TISIPSIYLELK-------VKLENEYALHRS-IVDHYNIPKTFDSDD 463

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.24
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.2
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.17
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.01
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.48
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	96.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.44
2lkt_A	125	Retinoic acid receptor responder protein 3; TIG3,	83.38

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.00  E-value=2.5e-10  Score=80.21  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=40.6

Q ss_pred             CCCCCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHh
Q 018722           88 GAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH  136 (351)
Q Consensus        88 ~~~~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWekl  136 (351)
                      ..+.++.+||+|+|..|+++|++.||+++++||+.+|+.+.++.+|+++
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            3456799999999999999999999999999999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.24  E-value=7.9e-07  Score=79.78  Aligned_cols=50  Identities=24%  Similarity=0.340  Sum_probs=46.7

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhh
Q 018722           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQK  140 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~k  140 (351)
                      -.+.+||+|++..||+||+|.||+++++||+.+|+.+.++.||+++.++.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~   66 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence            45888999999999999999999999999999999999999999998654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.20  E-value=8.9e-07  Score=84.99  Aligned_cols=54  Identities=22%  Similarity=0.433  Sum_probs=48.9

Q ss_pred             CCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhh---hhcccc
Q 018722           92 SVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQ---KWGRIV  145 (351)
Q Consensus        92 sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~---kwp~vL  145 (351)
                      .+-+||.+++-.||+||+|.|||++++||+..|..++.+.||..++.+   +|+.+-
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~   60 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVD   60 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCC
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccc
Confidence            467899999999999999999999999999999999999999999985   465544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.17  E-value=1.1e-06  Score=79.01  Aligned_cols=51  Identities=25%  Similarity=0.419  Sum_probs=47.8

Q ss_pred             CCCCCcHH----HHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhhhc
Q 018722           92 SVLDLPEL----VLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG  142 (351)
Q Consensus        92 sLLDLPee----lLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp  142 (351)
                      .+..||+|    ++..||+||+|.||+++++||+.+|+.+..+.||.++..+++.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            46679999    9999999999999999999999999999999999999998864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.05  E-value=3.3e-06  Score=75.46  Aligned_cols=49  Identities=18%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             CCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccC-chHHHHhhhhh
Q 018722           92 SVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMS-DHLWEKHMKQK  140 (351)
Q Consensus        92 sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~S-D~LWeklV~~k  140 (351)
                      .+.+||+|++..||+||+|.||++.++||+..++.+.+ +.||+++..+.
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            46789999999999999999999999999999999998 89999998544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.01  E-value=4.1e-06  Score=79.20  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=48.2

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHH-HHHhhcHHHHHhccCchHHHHhhhhh
Q 018722           91 MSVLDLPELVLECILEKLPPSGLC-NMAAVCSSLRDRCMSDHLWEKHMKQK  140 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLc-rmAaVCrsLRerc~SD~LWeklV~~k  140 (351)
                      +.+.+||+|+|..||++|+|.||+ +.++||+..|+.+.++.||.++.++.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            578899999999999999999999 99999999999999999999999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.48  E-value=3.6e-05  Score=67.29  Aligned_cols=49  Identities=22%  Similarity=0.307  Sum_probs=41.7

Q ss_pred             CCCCCCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHH
Q 018722           87 GGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEK  135 (351)
Q Consensus        87 ~~~~~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWek  135 (351)
                      ..++.++-+||+|+|..|+++|+..|+++++.||+..|+.+.+..+|..
T Consensus         3 ~~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B            3 NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             ----CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             ccccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence            3456789999999999999999999999999999999999877777764

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=96.78  E-value=0.001  Score=56.69  Aligned_cols=64  Identities=23%  Similarity=0.535  Sum_probs=44.9

Q ss_pred             CCCceeecCCCCCCCceeeecCCCccccccCCCCCCCcccccccccCCCCCCCeeEEEeeccCCCCccchhhhhccc
Q 018722          252 STDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHL  328 (351)
Q Consensus       252 ~TDTF~ARYpphGrr~~~ie~~i~WdRlRapPvdT~~hdlh~Sdcl~dLkPGDHIEIQWRrnkefPYgWWYgvVGHl  328 (351)
                      ..|.+..+|.. .++   .|+.|+-+.+|.||...+       +  .++..||-|||=+|.|-.=|.|||-|.|-..
T Consensus        26 ~~d~~~V~f~n-~w~---~~~~vp~~~vRlpP~~~~-------~--~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~   89 (128)
T 3h8z_A           26 HEDSVTIFFEN-NWQ---SERQIPFGDVRLPPPADY-------N--KEITEGDEVEVYSRANEQEPCGWWLARVRMM   89 (128)
T ss_dssp             CSSEEEEEETT-CTT---CCEEEEGGGEECCCCC-------------CCCTTCEEEEEECC---CCCEEEEEEEEEE
T ss_pred             eCCcEEEEEcc-ccC---cceEechhhEEcCCCccc-------c--cCCCCCCEEEEEecCCCCCcCccEEEEEEEe
Confidence            45556666642 233   377888999999987643       2  3789999999999999999999999998544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.19  E-value=0.011  Score=55.32  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             CCCCcHHHHHHHHccCC-hhhHHHHHhhcHHHHHh
Q 018722           93 VLDLPELVLECILEKLP-PSGLCNMAAVCSSLRDR  126 (351)
Q Consensus        93 LLDLPeelLd~ILs~LS-P~DLcrmAaVCrsLRer  126 (351)
                      +-+||+|+|..|+++|+ +.|+++++.||+..|+.
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            56799999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.44  E-value=0.018  Score=54.02  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CCCCCCcHHHHHHHHccC-ChhhHHHHHhhcHHHHHh
Q 018722           91 MSVLDLPELVLECILEKL-PPSGLCNMAAVCSSLRDR  126 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~L-SP~DLcrmAaVCrsLRer  126 (351)
                      ....+||+|+|..|+++| ++.|+++++.||+..+..
T Consensus        11 ~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           11 LSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             -CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             hccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            345689999999999999 899999999999998876

>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}

Probab=83.38  E-value=0.58  Score=37.86  Aligned_cols=13  Identities=46%  Similarity=0.662  Sum_probs=11.3

Q ss_pred             cCCCCCCCeeEEE
Q 018722          297 LNDLHPGDHIEIQ  309 (351)
Q Consensus       297 l~dLkPGDHIEIQ  309 (351)
                      -.+.||||||||+
T Consensus         5 ~~ep~pGDlI~~~   17 (125)
T 2lkt_A            5 HQEPKPGDLIEIF   17 (125)
T ss_dssp             SCCCCTTCEEEEE
T ss_pred             CCCCCCCCEEEEe
Confidence            4689999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-05

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 14/81 (17%), Positives = 24/81 (29%)

Query: 95  DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQ 154
            LP+ +   +L  L P  L   A  C   R     + LW +  K++          R+  
Sbjct: 21  LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80

Query: 155 WHLASRKDSTHLKQGKQRLWM 175
                          + R+  
Sbjct: 81  KPGFIHSPWKSAYIRQHRIDT 101

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 95  DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQK------WGRIVGPA 148
              + + E IL  L    LC    VC           LW+K +++       W  +    
Sbjct: 17  RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERR 76

Query: 149 AYREWQWHLASRKDSTHLKQGKQRLWMKLF 178
            + ++ +       +       + L+ K+ 
Sbjct: 77  GWGQYLFKNKPPDGNAPPNSFYRALYPKII 106

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 7e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 95  DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLW 133
            LP+ +L  I   L    L  ++ VC         + LW
Sbjct: 3   SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.03
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.64
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.57
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	85.71

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1e-10  Score=88.73  Aligned_cols=52  Identities=23%  Similarity=0.273  Sum_probs=48.3

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhhhc
Q 018722           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG  142 (351)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp  142 (351)
                      -++..||+|++..||++|+|.||+++++||+.+|+.+.+|.||+++..+.+.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~   68 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGI   68 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTC
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCC
Confidence            4678899999999999999999999999999999999999999999877654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=77.47  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=38.8

Q ss_pred             CCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHH
Q 018722           94 LDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLW  133 (351)
Q Consensus        94 LDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LW  133 (351)
                      -.||+|++..|+++|+|.||+++++|||.+++.+.++.||
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            4799999999999999999999999999999999999998

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=6e-09  Score=79.72  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             CCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCc-hHHHHhhhhh
Q 018722           93 VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSD-HLWEKHMKQK  140 (351)
Q Consensus        93 LLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD-~LWeklV~~k  140 (351)
                      +.+||+|++..||++|++.||+++++||+..++.+.+| .||.++.-..
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            56799999999999999999999999999999998765 7999876543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.2e-08  Score=79.68  Aligned_cols=51  Identities=25%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             CCCCCc----HHHHHHHHccCChhhHHHHHhhcHHHHHhccCchHHHHhhhhhhc
Q 018722           92 SVLDLP----ELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG  142 (351)
Q Consensus        92 sLLDLP----eelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp  142 (351)
                      .+..||    +|++..||+||++.|||++|+||+.+|+.+.+|.||.++..+.+.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~   64 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcc
Confidence            345577    599999999999999999999999999999999999999877654

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.18  Score=38.41  Aligned_cols=28  Identities=25%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             cccccCCCCCCCeeEEEeeccCCCCccchhhhh
Q 018722          293 ISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVV  325 (351)
Q Consensus       293 ~Sdcl~dLkPGDHIEIQWRrnkefPYgWWYgvV  325 (351)
                      ..|.| .|+.||.|+|-=+.+ +   |||+|..
T Consensus        27 ~~dEL-s~~~Gd~i~Vl~~~~-~---gWw~g~~   54 (118)
T d1ng2a2          27 EGDEV-SLLEGEAVEVIHKLL-D---GWWVIRK   54 (118)
T ss_dssp             STTBC-CBCTTCEEEEEECCT-T---SEEEEEE
T ss_pred             CCCEe-cCCCCCEEEEeEecC-C---CeEEEEE
Confidence            46677 799999999974333 2   9999864