Citrus Sinensis ID: 018726

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Secondary Structure (PSIPRED)
ccccccccccccccccHHHcccccccEEEccccEEEcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHcccccEEEEccccccHHHHHHcccccccEEEEEcccccEEEcccHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEEcccccccEEEEccccccccccccccccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccccHEEEEcccccEEEEccEEEEHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccEEEccccHHHHHHHHHcccccccEEEEEccccccEEEEEEcccccEEEEEccEEEEHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHccccEEEccccHHHHHHHHHcccccccEEEEEcccccEEcccHHHHHHccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccEEEEcccEEEEccccccccEEEEEccHccccccHHHccEEcccc
Coil and Loop (DISEMBL)
mardndqskfidssdFLTVLASEGVEFLLsrqgkvplsscggkticlffsanwcrpcktftpQLVQLYDTLRTRGTELEVIFISfdhdengfeehfkcmpwlavpfdetLHKKLRIRKRREELKAiddskrqggKLEQLLAIEgrdyvlsrdhrkitvSELAGKTIglyfgahwcppcrsfTSQLIEVYNELKTTANHCFEVVLVstdrdhkefdlnhsimpwlaipyedrARQDLCRIFNikgipalvligpdgktisTNGKEMISLygakafpfteSRIAEIETALKKEgdalprevkdvkheHELKLDMAKAYVCDcckmrgrfwafscdvcnydlhpkcveginlnl
Flexible Loop (DISEMBL)
mardndqskfidssdflTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREelkaiddskrqggkleqllaiegrdyvlsrdhRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALkkegdalprEVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKcveginlnl
Low Complexity Region (SEG)
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHkklrirkrreelkAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Disordered region (IsUnstruct)
*************SDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR******************LEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETAL*************VKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN***
Disordered Region (DISOPRED)
*******************LASEGVEF**********SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEI*************EVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINL**
Disordered Region (DISEMBL)
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Disordered Region (DISPRO)
*************SDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q8VZQ0	392	Probable nucleoredoxin 3	yes	no	0.982	0.880	0.618	1e-140
Q7XPE8	471	Probable nucleoredoxin 3	no	no	0.863	0.643	0.502	9e-95
O80763	578	Probable nucleoredoxin 1	no	no	0.928	0.564	0.377	2e-73
Q7Y0E8	569	Probable nucleoredoxin 1-	no	no	0.951	0.586	0.358	4e-64
Q7Y0F2	581	Probable nucleoredoxin 1-	no	no	0.945	0.571	0.352	8e-62
Q0JIL1	394	Probable nucleoredoxin 2	no	no	0.894	0.796	0.342	2e-56
Q6GM16	414	Nucleoredoxin OS=Xenopus	N/A	no	0.669	0.567	0.335	3e-33
Q503L9	418	Nucleoredoxin OS=Danio re	yes	no	0.763	0.641	0.322	1e-32
A6QLU8	435	Nucleoredoxin OS=Bos taur	yes	no	0.700	0.565	0.304	3e-31
Q6DKJ4	435	Nucleoredoxin OS=Homo sap	yes	no	0.794	0.641	0.292	4e-31

>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1

 Score =  497 bits (1279), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/385 (61%), Positives = 288/385 (74%), Gaps = 40/385 (10%)

Query: 1   MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
           MA   D Q KF +S D  ++LA+EG+EFLLS  G+VPL    GKTICLFFSA WCRPCK 
Sbjct: 1   MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60

Query: 60  FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR---- 115
           FTP+L++LY+ L+ RG ELE+IF+SFDHD   F EHF CMPWLAVPF+ +L  KLR    
Sbjct: 61  FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120

Query: 116 -----------------------------------IRKRREELKAIDDSKRQGGKLEQLL 140
                                               +KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180

Query: 141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 200
             E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT    F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240

Query: 201 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
           EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300

Query: 261 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 320
           N +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD 
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360

Query: 321 CKMRGRFWAFSCDVCNYDLHPKCVE 345
           CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2

 Score =  347 bits (889), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 174/346 (50%), Positives = 222/346 (64%), Gaps = 43/346 (12%)

Query: 16  FLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74
           ++++    GV  LLS  GK +PLSS  GK ICLFFSA+WCRPC+ FTP+L+Q+Y  LR  
Sbjct: 14  YVSIPQLAGVGTLLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNT 73

Query: 75  GTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR----------------- 117
              +E+IFIS D DE  F ++FK MPWLA+PFD  L +KL ++                 
Sbjct: 74  CKNMEIIFISLDRDEISFLDYFKGMPWLALPFDTGLRQKLCVQFDIEHIPALIPLSTTLS 133

Query: 118 -------------------------KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 152
                                    KRR EL+ +DD++RQGG L QLL  + R+YV+S D
Sbjct: 134 HGFRVEEDAVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISAD 193

Query: 153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 212
             K  +S+L GKTIGLYFGAHWCPPCR+FT QL E Y+ELK      F+V+ +S DR+ +
Sbjct: 194 GIKTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEE 253

Query: 213 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 272
           EF  + S MPW AIPY D   Q+L RIF IKGIP L+++GPDGK   T+G+ +IS YGA 
Sbjct: 254 EFQASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAM 313

Query: 273 AFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVC 318
           AFPFTESR  E+E  LKKE D+LP  V+D +HEHEL+LDMAKAY+ 
Sbjct: 314 AFPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYLS 359

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1

 Score =  276 bits (706), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 205/368 (55%), Gaps = 42/368 (11%)

Query: 18  TVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
           +VL +   +F++S  G KVP+S   GKTI L FS    R C   TP+LV+ Y  L+    
Sbjct: 178 SVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKE 237

Query: 77  ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR--------------------- 115
           + E++ IS + DE  F + FK  PWLA+PF++    KL                      
Sbjct: 238 DFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTR 297

Query: 116 ------------------IRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT 157
                               ++ +ELK ++ +K +   LE LL     +YVL +D  K+ 
Sbjct: 298 HSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVL 357

Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217
           VS+L GKTI +YF AHWCPPCR+FT +L+EVY ++K   N  FE++ +S+DRD + FD  
Sbjct: 358 VSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKER-NEAFELIFISSDRDQESFDEY 416

Query: 218 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 277
           +S MPWLA+P+ D  +  L + F + GIP L  +GP G+T++   ++++  +GA A+PFT
Sbjct: 417 YSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFT 476

Query: 278 ESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCN 336
           E R+ EIE    +     P++VK V H EHEL+L   + Y CD C+  G  W++ CD C+
Sbjct: 477 EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD 536

Query: 337 YDLHPKCV 344
           +DLH KC 
Sbjct: 537 FDLHAKCA 544

Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1

 Score =  245 bits (625), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 198/379 (52%), Gaps = 45/379 (11%)

Query: 12  DSSDFLTVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
           D+    +VL +   ++LLS +G +VP+S   GK + L F  N   P   FT  L + Y+ 
Sbjct: 165 DNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEK 224

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR--------------- 115
           L+  G + EV+ +S D DE    E F  MPWLA+P ++ + +KL                
Sbjct: 225 LKEVGEKFEVVAVSLDSDEELSNESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIG 284

Query: 116 ---------------------------IRKRREELKAIDDSKRQGGKLEQLLAIEGRDYV 148
                                        ++ E L     +K +   LE LL I   D+V
Sbjct: 285 PDGKTLNNNVADIIDEHGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFV 344

Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L +D  K+ VSEL GKT+ LYF A WC PCR+F  +L++ YN++K   N  FE++ +S+D
Sbjct: 345 LGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHND-FEIIFISSD 403

Query: 209 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 268
           RD   +D   S MPWLA+P  D  +Q L + F ++GIP+LV IG DG+T++ + K  ++ 
Sbjct: 404 RDQSSYDEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTA 463

Query: 269 YGAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRF 327
           +GA AFPFTE R+ E+E  + +     P ++K   H EHEL L     Y CD C   G  
Sbjct: 464 HGADAFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSS 523

Query: 328 WAFSCDVCNYDLHPKCVEG 346
           W++ C  C++DLHPKC  G
Sbjct: 524 WSYRCRECDFDLHPKCALG 542

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1

 Score =  237 bits (605), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 192/380 (50%), Gaps = 48/380 (12%)

Query: 12  DSSDFLTVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
           D+    ++  +   ++L++ +G KVP+S   GK + L F  N   P   FT  L ++Y+ 
Sbjct: 172 DNQTIHSLFGTPTRDYLITNKGDKVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEK 231

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR--------------- 115
           L+  G + EV+ +S D DE  F E F  MPWLA+P  + + +KL                
Sbjct: 232 LKAVGEKFEVVMVSLDGDEESFNESFADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIG 291

Query: 116 ---------------------------IRKRREELKAIDDSKRQGGKLEQLLAIEGRDYV 148
                                        ++ E L     +K +   LE LL     D+V
Sbjct: 292 PDGKTLNDDIADIIDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFV 351

Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L +D  K+ VSEL GKT+ LYF A WCPPCR+F  +L+  YN++K   N  FE+V +S+D
Sbjct: 352 LGKDGAKVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKHND-FEIVFISSD 410

Query: 209 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 268
           R+   +D   S MPWLA+P  D  +Q L +IF I GIP+LV IGPDGKT++ + K  +  
Sbjct: 411 REQSSYDEFFSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVA 470

Query: 269 YGAKAFPFT----ESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMR 324
           +GA AFPFT    +    E E  +       P ++K   H+HEL L     Y CD C   
Sbjct: 471 HGADAFPFTEEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTTYGCDGCDEM 530

Query: 325 GRFWAFSCDVCNYDLHPKCV 344
           G  W++ C  C++DLHPKC 
Sbjct: 531 GDSWSYRCKECDFDLHPKCA 550

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 187/362 (51%), Gaps = 48/362 (13%)

Query: 28  LLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
           L+S  G +V +S   GK I L+F+ANW   C+ FTP L   Y  L+  G   EVIF+S D
Sbjct: 26  LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85

Query: 87  HDENGFEEHFKCMPWLAVPF-DETLHKKLRIR---------------------------- 117
            +   FE   + MPW AVPF D    K+L  R                            
Sbjct: 86  ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVH 145

Query: 118 -----------KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTI 166
                       R  EL+A +  K     LE++ ++ G+DYV +    ++ +S L GKT+
Sbjct: 146 RYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYV-NGSQEQVPISSLVGKTV 204

Query: 167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 226
           GLYF AH C PC  FT++L  +Y+ LK  A   FE++ +  D++   +  + S MPWLA+
Sbjct: 205 GLYFSAHRCAPCIKFTAKLAAIYSNLKGKAED-FEIIYIPMDKEEDGYLRSCSDMPWLAL 263

Query: 227 PYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 285
           PY+D A    L R F+++ IP LV++GPDGKT++  G+ +++LY   AFPFT+ +I  ++
Sbjct: 264 PYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQIRLLQ 323

Query: 286 TALKKEGDALPREVKDVKHEHELKLDMAKA----YVCDCCKMRGRFWAFSCDVCNYDLHP 341
               ++    P  ++   H HEL +   K+    Y+C  C  +G  WA+ C  C Y++H 
Sbjct: 324 EMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACGYEIHL 383

Query: 342 KC 343
           +C
Sbjct: 384 RC 385

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6GM16|NXN_XENLA Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 30/265 (11%)

Query: 45  ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104
           I L F      PC    P L   Y   R R   LE++F+S D D+  ++   K MPWLA+
Sbjct: 35  IGLLFGCGMSAPCLQLLPGLKDFYCKTRDR---LEIVFVSSDPDQKKWQLFVKDMPWLAL 91

Query: 105 PFDETLHKKLRIRKRRE-----ELKAIDDSKRQGGKLEQLLAI----EGRDY-------- 147
           P+ E  H+KL++  +        L  I+ S  +      LL +    EG ++        
Sbjct: 92  PYQEK-HRKLKLWNKFRISNIPSLIFIEASTVKTVCRNGLLLVKDDPEGLEFPWGPKPFC 150

Query: 148 ------VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
                 ++  + +    S L G  +G+YF A+WCPPCRS T  L+E Y ++K +    FE
Sbjct: 151 EVIAGPLIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQK-FE 209

Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTIST 260
           +VLVS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+ 
Sbjct: 210 IVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITR 269

Query: 261 NGK-EMISLYGAKAFPFTESRIAEI 284
            G+ E++     K FP+    + E+
Sbjct: 270 QGRVEVLRDIDCKEFPWHPKPVVEL 294

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 151/298 (50%), Gaps = 30/298 (10%)

Query: 48  FFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKCMPWLAV 104
           +F  +   PCK F   L + Y   +       +LE++FIS D D+  +++  + M W A+
Sbjct: 36  YFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPAL 95

Query: 105 PFDETLHKKLRIRKRRE-----ELKAIDDSKRQGGKLEQLLAI----EGRDYV------- 148
           PF +  HKK+++  + +      L  ID +  +      LL +    +G ++        
Sbjct: 96  PFKDR-HKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLEFPWGPKPFA 154

Query: 149 ------LSRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
                 L R++R+ T S  L G  +G+YF AHWCPPCRS T  L+E Y ++K T    FE
Sbjct: 155 EVVSGPLLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQK-FE 213

Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTIST 260
           +V VS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+L+  +G  I+ 
Sbjct: 214 IVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITR 273

Query: 261 NGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
            G+ E+++      FP+    + E+  +   +    P  V  V  E E +LD AK  +
Sbjct: 274 QGRVEILNDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGELDPAKELI 331

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 144/292 (49%), Gaps = 46/292 (15%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-------------------E 77
           L++ G   + L+F  +   PC   +  L   Y  LR                        
Sbjct: 26  LAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGPGAGASAEPEPRRR 85

Query: 78  LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RKRREELKAIDDSKRQGGK 135
           LE++F+S D D+  +++  + MPWLA+P+ E  H+KL++  + R   + ++       GK
Sbjct: 86  LEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRISNIPSLIFLDATSGK 144

Query: 136 L---EQLLAI----EGRDY--------------VLSRDHRKITVSELAGKTIGLYFGAHW 174
           +     LL I    EG ++              +L  + + +  S L G  +G+YF AHW
Sbjct: 145 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRSNGQSLESSSLEGSHVGVYFSAHW 204

Query: 175 CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 234
           CPPCRS T  L+E Y ++K  A   FE++ VS DR    F    S MPWLA+PY D AR+
Sbjct: 205 CPPCRSLTRVLVESYRKIK-EAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARR 263

Query: 235 D-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEI 284
             L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E+
Sbjct: 264 SRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPWHPKPVLEL 315

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 157/325 (48%), Gaps = 46/325 (14%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-------------------E 77
           L + G   + L+F  +   PC   +  L   Y  LR                        
Sbjct: 26  LGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGAAAEPEPRRR 85

Query: 78  LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RKRREELKAIDDSKRQGGK 135
           LE++F+S D D+  +++  + MPWLA+P+ E  H+KL++  + R   + ++       GK
Sbjct: 86  LEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRISNIPSLIFLDATTGK 144

Query: 136 L---EQLLAI----EGRDY--------------VLSRDHRKITVSELAGKTIGLYFGAHW 174
           +     LL I    EG ++              +L  + + +  S L G  +G+YF AHW
Sbjct: 145 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHW 204

Query: 175 CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 234
           CPPCRS T  L+E Y ++K  A   FE++ VS DR  + F    S MPWLA+PY D AR+
Sbjct: 205 CPPCRSLTRVLVESYRKIK-EAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARR 263

Query: 235 D-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEG 292
             L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E+  +   + 
Sbjct: 264 SRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQL 323

Query: 293 DALPREVKDVKHEHELKLDMAKAYV 317
           +  P  V  V  E + + + AK  +
Sbjct: 324 NEGPCLVLFVDSEDDGESEAAKQLI 348

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
224121244	401	predicted protein [Populus trichocarpa]	0.982	0.860	0.658	1e-147
296081801	1126	unnamed protein product [Vitis vinifera]	0.954	0.297	0.665	1e-146
18417767	392	putative nucleoredoxin 3 [Arabidopsis th	0.982	0.880	0.618	1e-138
297798848	392	predicted protein [Arabidopsis lyrata su	0.982	0.880	0.625	1e-138
357466557	392	Nucleoredoxin [Medicago truncatula] gi|3	0.991	0.887	0.607	1e-133
356515549	389	PREDICTED: probable nucleoredoxin 3-like	0.991	0.894	0.602	1e-133
356507842	389	PREDICTED: probable nucleoredoxin 3-like	0.991	0.894	0.599	1e-131
242077118	389	hypothetical protein SORBIDRAFT_06g02795	0.914	0.825	0.546	1e-113
449499528	391	PREDICTED: probable nucleoredoxin 3-like	0.960	0.861	0.551	1e-112
449442006	391	PREDICTED: probable nucleoredoxin 3-like	0.960	0.861	0.548	1e-112

>gi|224121244|ref|XP_002330779.1| predicted protein [Populus trichocarpa] gi|222872581|gb|EEF09712.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/384 (65%), Positives = 300/384 (78%), Gaps = 39/384 (10%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  + Q+KF++ SDF+ +L+S+G+++LLS +GKVPLSSC  K ICLFFSANWCRPCK F
Sbjct: 1   MAGLDGQAKFVEGSDFVAILSSQGIDYLLSGEGKVPLSSCDCKVICLFFSANWCRPCKAF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL------ 114
            PQLV++Y++LR  G +LE++FISFD DE+GF+EHFKCMPWLAVPF+  LH+ L      
Sbjct: 61  APQLVKIYNSLRGTGKKLEIVFISFDRDEDGFKEHFKCMPWLAVPFEVNLHRHLSDIYHV 120

Query: 115 -RI--------------------------------RKRREELKAIDDSKRQGGKLEQLLA 141
            RI                                R+R +EL++IDD+KRQGGKL+QLLA
Sbjct: 121 NRIPSCISLGSDGISVEEDMIGLIEDFGAEAFPFTRERFDELRSIDDAKRQGGKLQQLLA 180

Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
            EGR+YVLS D RKI VSEL GKTIGLYFGAHWCPP R+FT+QLI+ YNE+ TT + CFE
Sbjct: 181 HEGRNYVLSGDTRKIFVSELVGKTIGLYFGAHWCPPSRAFTTQLIQNYNEIITTNDGCFE 240

Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
           ++LVSTDRD KEF+ N S MPWLAIPYEDR RQDLCRIFNIKGIPALV+IG DGK I T+
Sbjct: 241 IILVSTDRDLKEFNTNLSNMPWLAIPYEDRTRQDLCRIFNIKGIPALVIIGQDGKIIRTD 300

Query: 262 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 321
           GK MISLYGAKAFPFTESRI EIE  LK+EGDALPR+VKD+KH+H LKLDMAKAYVCDCC
Sbjct: 301 GKAMISLYGAKAFPFTESRITEIEATLKEEGDALPRQVKDIKHQHALKLDMAKAYVCDCC 360

Query: 322 KMRGRFWAFSCDVCNYDLHPKCVE 345
             +G+FWAFSCDVC+YDLHP CVE
Sbjct: 361 NGQGKFWAFSCDVCDYDLHPACVE 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081801|emb|CBI20806.3| unnamed protein product [Vitis vinifera]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/374 (66%), Positives = 288/374 (77%), Gaps = 39/374 (10%)

Query: 11  IDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
           +DS+D +TVLASEG+EFLLS +GKV LSS  GK ICLFFSANWCRPC+TFTPQLVQ+Y++
Sbjct: 11  VDSNDIITVLASEGIEFLLSGEGKVSLSSTEGKMICLFFSANWCRPCRTFTPQLVQIYNS 70

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR--------------- 115
           L   G  +E+IFISFD DE GF EHFK MPWLAVPF+  LH++L                
Sbjct: 71  LIKTGRMIEIIFISFDRDETGFGEHFKSMPWLAVPFNVDLHRRLSDHYHVDHIPSFIPLG 130

Query: 116 ------------------------IRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSR 151
                                     +RREELKA+D++KRQGGKLE+LLA EGR++V+S 
Sbjct: 131 LDGKSIEEDAIGLIEDYGASAFPFTSQRREELKAMDNAKRQGGKLEELLANEGRNHVISS 190

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
             R+I VSEL GKTIGLYF AHWCPPCR+FT+QLIE YN+L  T N CFE++ VSTDRDH
Sbjct: 191 SGREILVSELVGKTIGLYFAAHWCPPCRAFTAQLIEAYNKLVATRNQCFEIIFVSTDRDH 250

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271
           +EFDL+ S MPWLAIPYED+ARQDLCRIF+IKGIPALVL+G DGKTISTNG+ +IS YGA
Sbjct: 251 QEFDLSLSNMPWLAIPYEDKARQDLCRIFDIKGIPALVLLGSDGKTISTNGRAIISSYGA 310

Query: 272 KAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFS 331
            AFPFTESR  EIE ALK+EGDALPR+VKD+KHEH LKLDMAKAYVCD CK  GRFWAFS
Sbjct: 311 MAFPFTESRTTEIEAALKEEGDALPRQVKDLKHEHILKLDMAKAYVCDSCKKLGRFWAFS 370

Query: 332 CDVCNYDLHPKCVE 345
           CDVC+YDLHP CVE
Sbjct: 371 CDVCDYDLHPTCVE 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417767|ref|NP_567869.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|42573109|ref|NP_974651.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|75161682|sp|Q8VZQ0.1|NRX3_ARATH RecName: Full=Probable nucleoredoxin 3; Short=AtNrx3 gi|17380978|gb|AAL36301.1| unknown protein [Arabidopsis thaliana] gi|20465609|gb|AAM20287.1| putative receptor kinase [Arabidopsis thaliana] gi|332660480|gb|AEE85880.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|332660481|gb|AEE85881.1| putative nucleoredoxin 3 [Arabidopsis thaliana]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/385 (61%), Positives = 288/385 (74%), Gaps = 40/385 (10%)

Query: 1   MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
           MA   D Q KF +S D  ++LA+EG+EFLLS  G+VPL    GKTICLFFSA WCRPCK 
Sbjct: 1   MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60

Query: 60  FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR---- 115
           FTP+L++LY+ L+ RG ELE+IF+SFDHD   F EHF CMPWLAVPF+ +L  KLR    
Sbjct: 61  FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120

Query: 116 -----------------------------------IRKRREELKAIDDSKRQGGKLEQLL 140
                                               +KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180

Query: 141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 200
             E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT    F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240

Query: 201 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
           EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300

Query: 261 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 320
           N +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD 
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360

Query: 321 CKMRGRFWAFSCDVCNYDLHPKCVE 345
           CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798848|ref|XP_002867308.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313144|gb|EFH43567.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/385 (62%), Positives = 287/385 (74%), Gaps = 40/385 (10%)

Query: 1   MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
           MA   D Q KF +S D  ++LA+EG+EFLLS  G+VPL    GKTICLFFSANWCRPCK 
Sbjct: 1   MAVSTDYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSANWCRPCKD 60

Query: 60  FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR---- 115
           FTP+LV+LY+ L+TRG ELE+IF+SFDHD   F EHF CMPWLAVPF+  L  KLR    
Sbjct: 61  FTPELVKLYENLQTRGEELEIIFVSFDHDMTLFYEHFWCMPWLAVPFNLNLLNKLRDKYR 120

Query: 116 -----------------------------------IRKRREELKAIDDSKRQGGKLEQLL 140
                                               +KR+ ELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGPEAFPFTKKRKAELKAIDDSKRIGGQLEKLL 180

Query: 141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 200
             E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL T     F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLLDVYNELATRDKGSF 240

Query: 201 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
           EV+LVSTDRD +EF++N + MPWLAIPYEDR RQDLCRIF+IK IPALV+IGP+ KT++T
Sbjct: 241 EVILVSTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFSIKLIPALVIIGPEEKTVTT 300

Query: 261 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 320
           N +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD 
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDKKHEHELKLDMAKAYVCDF 360

Query: 321 CKMRGRFWAFSCDVCNYDLHPKCVE 345
           CK +GRFWAFSCD C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCDACDYDLHPTCVE 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466557|ref|XP_003603563.1| Nucleoredoxin [Medicago truncatula] gi|355492611|gb|AES73814.1| Nucleoredoxin [Medicago truncatula] gi|388520387|gb|AFK48255.1| unknown [Medicago truncatula]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 283/387 (73%), Gaps = 39/387 (10%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  N ++++ DS D L V A+EGVEFLLS + KVPLS C GK ICLFFSANWCRPC+ F
Sbjct: 1   MAGLNFEAEYPDSFDVLKVFAAEGVEFLLSCERKVPLSDCNGKIICLFFSANWCRPCRLF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL------ 114
            P LV LY+TLR RG  +E+IFISFDHDE+GF+EH K MPWLAVPFD  L+++L      
Sbjct: 61  IPHLVGLYETLRKRGINIEIIFISFDHDEDGFKEHIKSMPWLAVPFDAKLNRRLIDRYRV 120

Query: 115 -RI--------------------------------RKRREELKAIDDSKRQGGKLEQLLA 141
            RI                                RKR EELKAID  KR+   L++LL 
Sbjct: 121 DRIPSFIPLCSDALTVDKNMIEWIEDYGADAFPFTRKRHEELKAIDKRKREEVNLDELLT 180

Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
             GR++++S D RK+ VSEL GKT+GL+FGA+W PPC +FT QL + YN LK T  HCFE
Sbjct: 181 HGGRNFLISGDDRKVLVSELTGKTVGLFFGAYWSPPCHAFTIQLADAYNNLKDTKGHCFE 240

Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
           +VLVSTDRD KEF++N + MPWLAIPYEDR R DLCRIF+IK IPALV IGPDGK IS N
Sbjct: 241 IVLVSTDRDLKEFNVNRTSMPWLAIPYEDRTRHDLCRIFDIKKIPALVFIGPDGKVISLN 300

Query: 262 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 321
           G+ M+S YGA+AFPFTESRI ++E AL+KEG+ALP++V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GQFMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHLLKLDMAKAYVCDSC 360

Query: 322 KMRGRFWAFSCDVCNYDLHPKCVEGIN 348
           K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515549|ref|XP_003526462.1| PREDICTED: probable nucleoredoxin 3-like [Glycine max]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/387 (60%), Positives = 285/387 (73%), Gaps = 39/387 (10%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  N ++ + D+ D L + A+EGVEFLLS +GKVP+S C GK ICLFF+ANWCRPC+ F
Sbjct: 1   MAGLNFEATYTDNHDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL------ 114
            P+LV+LY+TLR RG  LE+IFISFD DE+GF+EHFK MPWLAVPFD +LH++L      
Sbjct: 61  IPRLVELYETLRKRGINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDVSLHRRLIDRYRI 120

Query: 115 -RI--------------------------------RKRREELKAIDDSKRQGGKLEQLLA 141
            RI                                RKR EELKAID  KR+   LE+LL 
Sbjct: 121 DRIPSFVPLCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKAIDIRKREEANLEELLG 180

Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
            +G  +++S D RK+ +SELAGKTIGLYFGA+W PPC +FT QL + YN LK     CFE
Sbjct: 181 HKGCHFLISGDDRKVPISELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKVEKGDCFE 240

Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
           +VL+STDRD +EF++N S MPWLA+PYEDR R DL RIF++KGIPALVLIGPDGK IS N
Sbjct: 241 IVLISTDRDLEEFNVNKSSMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVN 300

Query: 262 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 321
           GK M+S YGA+AFPFTESRI ++E AL+KEG+ALP++V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSC 360

Query: 322 KMRGRFWAFSCDVCNYDLHPKCVEGIN 348
           K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507842|ref|XP_003522672.1| PREDICTED: probable nucleoredoxin 3-like [Glycine max]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/387 (59%), Positives = 280/387 (72%), Gaps = 39/387 (10%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  N ++   D+ D L + A+EGVEFLLS +GKVP+S C GK ICLFF+ANWCRPC+ F
Sbjct: 1   MAGLNFEATHTDNRDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL------ 114
            P+LV+LY+TLR R   LE+IFISFD DE+GF+EHFK MPWLAVPFD  LH++L      
Sbjct: 61  VPRLVELYETLRKRRINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDLNLHRRLIDRYQV 120

Query: 115 -RI--------------------------------RKRREELKAIDDSKRQGGKLEQLLA 141
            RI                                RKR EELK ID  KR+   LE+LL 
Sbjct: 121 DRIPSFVPSCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKGIDIRKREEADLEELLG 180

Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
            EG  +++S D RK+ +SELAGKTIGLYFGA+W PPC +FT QL + YN LK     CFE
Sbjct: 181 HEGGKFLISGDDRKVPLSELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKAAKGDCFE 240

Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
           +VL+STDRD +EF++N S MPWLA+PYEDR R DL RIF++KGIPALVLIGPDGK IS N
Sbjct: 241 IVLISTDRDLEEFNVNKSTMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVN 300

Query: 262 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 321
           GK M+S YGA+AFPFTESRI ++E AL+KEG+ALP +V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPPQVEDVKHEHVLKLDMAKAYVCDSC 360

Query: 322 KMRGRFWAFSCDVCNYDLHPKCVEGIN 348
           K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077118|ref|XP_002448495.1| hypothetical protein SORBIDRAFT_06g027950 [Sorghum bicolor] gi|241939678|gb|EES12823.1| hypothetical protein SORBIDRAFT_06g027950 [Sorghum bicolor]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/364 (54%), Positives = 248/364 (68%), Gaps = 43/364 (11%)

Query: 24  GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIF 82
           GV+FLL+ +GK VPLSS  GKT CLFFSA+WCRPC++FTP LVQ+Y  LR  G  +E+IF
Sbjct: 18  GVQFLLNNEGKEVPLSSIEGKTTCLFFSAHWCRPCRSFTPNLVQIYTALRNTGKNIEIIF 77

Query: 83  ISFDHDENGFEEHFKCMPWLAVPFDETLHKKL---------------------------- 114
           IS DHDE  F +HFK M WLA+PFD  L +KL                            
Sbjct: 78  ISLDHDEASFWDHFKGMSWLALPFDTGLSQKLCAHFGIEHIPALIPLSATPSSGVGFEED 137

Query: 115 RIR--------------KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE 160
            +R              +RR EL+A+DD++R+GGKL++LL  + RDYV+S D  KI +++
Sbjct: 138 AVRLVDEYGEDAYPFSAQRRRELEAMDDARRKGGKLQELLGCKERDYVISADDIKIPIAD 197

Query: 161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 220
           L GKT+GLYFGAHWCPPC  FT QL EVYNELK      FEV+ +S DR+  EF  + S 
Sbjct: 198 LTGKTVGLYFGAHWCPPCHVFTKQLKEVYNELKILRPESFEVIFISIDRNKGEFQASMSS 257

Query: 221 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESR 280
           MPWLAIPY D ARQ L RIF +KGIP L+++G DGK + T+G+  IS YGA AFPFTESR
Sbjct: 258 MPWLAIPYSDTARQKLTRIFAVKGIPGLLILGLDGKVLKTDGRTAISTYGATAFPFTESR 317

Query: 281 IAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLH 340
           ++E++ AL+KEGD LPR+V D KH H L+LDMAKAYVCD C+ +GR+W FSC  CN+DLH
Sbjct: 318 VSEVDEALRKEGDKLPRQVNDPKHRHVLELDMAKAYVCDECQKKGRYWVFSCKQCNFDLH 377

Query: 341 PKCV 344
           P CV
Sbjct: 378 PSCV 381

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499528|ref|XP_004160840.1| PREDICTED: probable nucleoredoxin 3-like [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/379 (55%), Positives = 257/379 (67%), Gaps = 42/379 (11%)

Query: 12  DSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
           D  DFL +LA  GV+FLLS + KV    C GK ICLFFSANW RPC+TFTPQLVQLY++L
Sbjct: 11  DKDDFLQLLAVLGVDFLLSGEEKVSPILCAGKMICLFFSANWSRPCRTFTPQLVQLYNSL 70

Query: 72  RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL----------------- 114
           + RG +LE+IFIS DHD+N FE++FK MPWLAVP ++ L K+L                 
Sbjct: 71  QKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNDKLQKQLCGKYHVDCIPSFVPLCG 130

Query: 115 ----------------------RIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 152
                                   RKR +ELKA+D +KR  G+LE+L    G +YV+S  
Sbjct: 131 DHILKEDDLIGFIEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSH 190

Query: 153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANH--CFEVVLVSTDR 209
             K  +S+L GKTIGLYFGA+W PP RSFT++L +VY E +  T NH    EV+ VSTDR
Sbjct: 191 GGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSSLEVIFVSTDR 250

Query: 210 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 269
           +  EF LN   MPWLAIPYED  R DL RIF++K IP LVLIG DGKT S NG+ ++ LY
Sbjct: 251 NLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLY 310

Query: 270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWA 329
           GA+AFPFT  RI E+E A+KKEG+ LP +V+D+KHEH LKL+ AKAYVCD CK++GRFWA
Sbjct: 311 GAEAFPFTAERIYELERAVKKEGEDLPSKVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWA 370

Query: 330 FSCDVCNYDLHPKCVEGIN 348
           FSC VC+YDLHP CV+  N
Sbjct: 371 FSCHVCDYDLHPTCVQLTN 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442006|ref|XP_004138773.1| PREDICTED: probable nucleoredoxin 3-like [Cucumis sativus]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/379 (54%), Positives = 257/379 (67%), Gaps = 42/379 (11%)

Query: 12  DSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
           D  DFL +LA  GV+FLLS + KV    C GK ICLFFSANW RPC+TFTPQLVQLY++L
Sbjct: 11  DKDDFLQLLAVLGVDFLLSGEEKVSPILCAGKMICLFFSANWSRPCRTFTPQLVQLYNSL 70

Query: 72  RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL----------------- 114
           + RG +LE+IFIS DHD+N FE++FK MPWLAVP ++ L K+L                 
Sbjct: 71  QKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNDKLQKQLCGKYHVDCIPSFVPLCG 130

Query: 115 ----------------------RIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 152
                                   RKR +ELKA+D +KR  G+LE+L    G +YV+S  
Sbjct: 131 DHILKEDDLIGFLEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSH 190

Query: 153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANH--CFEVVLVSTDR 209
             K  +S+L GKTIGLYFGA+W PP RSFT++L +VY E +  T NH    EV+ VSTDR
Sbjct: 191 GGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSSLEVIFVSTDR 250

Query: 210 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 269
           +  EF LN   MPWLAIPYED  R DL RIF++K IP LVLIG DGKT S NG+ ++ LY
Sbjct: 251 NLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLY 310

Query: 270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWA 329
           GA+AFPFT  RI E+E A+KKEG+ LP +V+D+KHEH LKL+ AKAYVCD CK++GRFWA
Sbjct: 311 GAEAFPFTAERIYELERAVKKEGEDLPSKVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWA 370

Query: 330 FSCDVCNYDLHPKCVEGIN 348
           FSC +C+YDLHP CV+  N
Sbjct: 371 FSCHICDYDLHPTCVQLTN 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2128141	392	AT4G31240 [Arabidopsis thalian	0.629	0.563	0.719	3.8e-127
TAIR|locus:2195623	578	AT1G60420 [Arabidopsis thalian	0.618	0.375	0.438	5.9e-76
UNIPROTKB|Q6DKJ4	435	NXN "Nucleoredoxin" [Homo sapi	0.481	0.388	0.348	3e-37
RGD|1310489	435	Nxn "nucleoredoxin" [Rattus no	0.481	0.388	0.354	5.7e-37
MGI|MGI:109331	435	Nxn "nucleoredoxin" [Mus muscu	0.481	0.388	0.348	1.1e-36
ZFIN|ZDB-GENE-050522-75	418	nxn "nucleoredoxin" [Danio rer	0.478	0.401	0.395	1.7e-36
UNIPROTKB|A6QLU8	435	NXN "Nucleoredoxin" [Bos tauru	0.481	0.388	0.354	1.9e-36
UNIPROTKB|Q6GM16	414	nxn "Nucleoredoxin" [Xenopus l	0.450	0.381	0.385	9.2e-36
UNIPROTKB|I3LEF2	328	NXN "Uncharacterized protein"	0.450	0.481	0.372	1.8e-25
UNIPROTKB|F1NG23	328	NXN "Uncharacterized protein"	0.481	0.515	0.343	5.3e-24

TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
 Identities = 159/221 (71%), Positives = 192/221 (86%)

Query:   125 AIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQ 184
             AIDDSKR GG+LE+LL  E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQ
Sbjct:   165 AIDDSKRLGGQLEKLLTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQ 224

Query:   185 LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 244
             L++VYNEL TT    FEV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K 
Sbjct:   225 LVDVYNELATTDKGSFEVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKL 284

Query:   245 IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKH 304
             IPALV+IGP+ KT++TN +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KH
Sbjct:   285 IPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKH 344

Query:   305 EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVE 345
             EHELKLDMAKAYVCD CK +GRFWAFSC+ C+YDLHP CVE
Sbjct:   345 EHELKLDMAKAYVCDFCKKQGRFWAFSCNACDYDLHPTCVE 385

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 96/219 (43%), Positives = 142/219 (64%)

Query:   126 IDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL 185
             ++ +K +   LE LL     +YVL +D  K+ VS+L GKTI +YF AHWCPPCR+FT +L
Sbjct:   326 LEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKL 385

Query:   186 IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 245
             +EVY ++K   N  FE++ +S+DRD + FD  +S MPWLA+P+ D  +  L + F + GI
Sbjct:   386 VEVYKQIKER-NEAFELIFISSDRDQESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGI 444

Query:   246 PALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE 305
             P L  +GP G+T++   ++++  +GA A+PFTE R+ EIE    +     P++VK V HE
Sbjct:   445 PMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHE 504

Query:   306 -HELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKC 343
              HEL+L   + Y CD C+  G  W++ CD C++DLH KC
Sbjct:   505 EHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKC 543

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
 Identities = 60/172 (34%), Positives = 98/172 (56%)

Query:   148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K    + FE++ VS 
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQN-FEIIFVSA 236

Query:   208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 265
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEV 296

Query:   266 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
 Identities = 61/172 (35%), Positives = 98/172 (56%)

Query:   148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS 
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSA 236

Query:   208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 265
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296

Query:   266 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072358 "cardiovascular system development" evidence=ISO

MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
 Identities = 60/172 (34%), Positives = 97/172 (56%)

Query:   148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K      FE++ VS 
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQE-FEIIFVSA 236

Query:   208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 265
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296

Query:   266 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0031397 "negative regulation of protein ubiquitination" evidence=IMP

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0072358 "cardiovascular system development" evidence=IMP

ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)]

 Score = 298 (110.0 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 68/172 (39%), Positives = 98/172 (56%)

Query:   149 LSRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
             L R++R+ T S  L G  +G+YF AHWCPPCRS T  L+E Y ++K T    FE+V VS 
Sbjct:   161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQK-FEIVFVSA 219

Query:   208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 265
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+L+  +G  I+  G+ E+
Sbjct:   220 DRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEI 279

Query:   266 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
             ++      FP+    + E+  +   +    P  V  V  E E +LD AK  +
Sbjct:   280 LNDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGELDPAKELI 331

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
 Identities = 61/172 (35%), Positives = 97/172 (56%)

Query:   148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS 
Sbjct:   178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSA 236

Query:   208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 265
             DR    F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296

Query:   266 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCRGFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)]

 Score = 290 (107.1 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 62/161 (38%), Positives = 92/161 (57%)

Query:   159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 218
             S L G  +G+YF A+WCPPCRS T  L+E Y ++K +    FE+VLVS DR  + F    
Sbjct:   168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQK-FEIVLVSADRSEESFKQYF 226

Query:   219 SIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPF 276
             S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E++     K FP+
Sbjct:   227 SEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPW 286

Query:   277 TESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
                 + E+      + +  P  V  V  E E + + AK  +
Sbjct:   287 HPKPVVELTELNAVQLNEGPCLVLFVDSEDEGESEAAKQLI 327

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/161 (37%), Positives = 92/161 (57%)

Query:   159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 218
             S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS DR    F    
Sbjct:    82 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSADRSEDSFKQYF 140

Query:   219 SIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPF 276
             S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+
Sbjct:   141 SEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPW 200

Query:   277 TESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
                 + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   201 HPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 241

GO:0072358 "cardiovascular system development" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 59/172 (34%), Positives = 96/172 (55%)

Query:   148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS 
Sbjct:    71 LLRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEILFVSA 129

Query:   208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 265
             DR    F    S MPW+A+PY D AR+  L R++ I+GIP L+++   G+ I+  G+ E+
Sbjct:   130 DRSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVLDSQGEVITRQGRVEV 189

Query:   266 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 317
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   190 LNDIECREFPWHPKPVLELTDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 241

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0072358 "cardiovascular system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZQ0	NRX3_ARATH	1, ., 8, ., 1, ., 8	0.6181	0.9829	0.8801	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	8e-66
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	4e-53
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	5e-39
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	2e-34
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	3e-23
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	2e-16
cd03008	146	cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like	2e-12
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	4e-11
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	3e-09
cd03008	146	cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like	4e-07
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	8e-07
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	7e-06
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	1e-05
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	7e-05
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	7e-05
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	1e-04
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	4e-04
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	0.002
pfam03107	30	pfam03107, C1_2, C1 domain	0.002
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	0.003
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	0.004

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  203 bits (519), Expect = 8e-66
 Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 2/132 (1%)

Query: 146 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 205
           D++L  D  K+ VS L GKT+GLYF A WCPPCR+FT +L+E Y +LK +    FE+V +
Sbjct: 1   DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-GKNFEIVFI 59

Query: 206 STDRDHKEFDLNHSIMPWLAIPYEDRA-RQDLCRIFNIKGIPALVLIGPDGKTISTNGKE 264
           S DRD + F+   S MPWLA+P+ DR  R  L R F I+GIP L+++  DG+ ++T+ +E
Sbjct: 60  SWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARE 119

Query: 265 MISLYGAKAFPF 276
           ++  YGA AFPF
Sbjct: 120 LVLEYGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  171 bits (435), Expect = 4e-53
 Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 5/134 (3%)

Query: 146 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 205
            ++L  +     VS L GKT+GLYF A WCPPCR+FT +L+E Y +LK      FE+V V
Sbjct: 1   LFLLDGEGVVP-VSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-GKNFEIVFV 58

Query: 206 STDRDHKEFDLN-HSIMPWLAIPYEDRA-RQDLCRIFNIKGIPALVLIGPDGKTISTNGK 263
           S DR  + F+     + PWLA+P+ED   R+ L + F ++GIP LV++ PDG  ++TN +
Sbjct: 59  SRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNAR 118

Query: 264 EMIS-LYGAKAFPF 276
           + +    GA AFP+
Sbjct: 119 DEVEEDPGACAFPW 132

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  134 bits (340), Expect = 5e-39
 Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 9/100 (9%)

Query: 26  EFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
           +FLL   G KVP+SS  GKT+ L+FSA+WC PC+ FTP+LV+ Y+ L+  G   E++FIS
Sbjct: 1   DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60

Query: 85  FDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELK 124
           +D DE  F ++F  MPWLAVPF +        R+RR  L 
Sbjct: 61  WDRDEESFNDYFSKMPWLAVPFSD--------RERRSRLN 92

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  123 bits (310), Expect = 2e-34
 Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 26  EFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85
            FLL  +G VP+S+  GKT+ L+FSA+WC PC+ FTP+LV+ Y+ L+  G   E++F+S 
Sbjct: 1   LFLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR 60

Query: 86  DHDENGFEEHFKCM-PWLAVPF-DETLHKKLR 115
           D  E  F E+F  M PWLAVPF DE L + L 
Sbjct: 61  DRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 92.0 bits (229), Expect = 3e-23
 Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 5/96 (5%)

Query: 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSI 220
           GK + LYF A WCPPCR+FT +L E+Y +LK       E+V VS DRD +E+   L    
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYEKLK-KPK--VEIVYVSLDRDEEEWKKYLKKMP 57

Query: 221 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
             WL +P+ D+ R +L R++ +K IP LVL+  DG+
Sbjct: 58  KDWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 4/76 (5%)

Query: 42  GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP- 100
           GK + L+F A+WC PC+ FTP+L +LY+ L  +  ++E++++S D DE  ++++ K MP 
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYEKL--KKPKVEIVYVSLDRDEEEWKKYLKKMPK 58

Query: 101 -WLAVPFDETLHKKLR 115
            WL VPF +    +L 
Sbjct: 59  DWLNVPFGDKERNELL 74

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQL----IEVYNELKTTANHCFEVVLVSTDRDHKE 213
           V+ L  + + L+FGA   P C+ F  +L    + + +E     +    +V VS D+  ++
Sbjct: 20  VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79

Query: 214 FDLNHSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271
            +     MP  WL +P+ED  R++L   F+++ +P +V++ PDG  ++ N  + I   G 
Sbjct: 80  QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139

Query: 272 KAF 274
             F
Sbjct: 140 ACF 142

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D + +++S+L GK + + F A WCPPCR+   +L  +  E K       EVV V+ D D 
Sbjct: 8   DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG---VEVVGVNVDDDD 64

Query: 212 KEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALVLIGPDGKTI 258
                  ++  +L    I +    D    +L + + ++G+P   LI  DG+  
Sbjct: 65  PA-----AVKAFLKKYGITFPVLLD-PDGELAKAYGVRGLPTTFLIDRDGRIR 111

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 18/113 (15%)

Query: 154 RKITVSELAGKTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--D 210
           +++++S+  GK + L+F    + P C +    L ++Y E K       EV+ VS D    
Sbjct: 16  KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFK---KLGVEVLGVSVDSPES 72

Query: 211 HKEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGK 256
           HK+F     +  P L+ P       ++ + + +        +    +I PDGK
Sbjct: 73  HKKFAEKLGLPFPLLSDP-----DGEVAKAYGVLNEEEGLALRTTFVIDPDGK 120

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 43  KTICLFFSANWCRPCKTFTPQL----VQLYDTLRT-RGTELEVIFISFDHDENGFEEHFK 97
           + + LFF A     C+ F P+L    V+L D     R  +L ++++S D  E   E   K
Sbjct: 26  RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLK 85

Query: 98  CMP--WLAVPFDETLHKKLRIRKRREELKAI 126
            MP  WL +PF++   ++L  +   EEL  +
Sbjct: 86  DMPKKWLFLPFEDEFRRELEAQFSVEELPTV 116

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 222
           GK + + F    CP C+    +L++  +  +   ++ F V+ V+ D              
Sbjct: 5   GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDN-FVVIYVNVDDS----------KE 53

Query: 223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 258
                 E  + ++L R + ++G P +V +  DGK +
Sbjct: 54  VTDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEV 89

Length = 105

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 43/122 (35%)

Query: 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 227
           + F A WC PC++       V  EL         V  V  D D                 
Sbjct: 15  VDFWAPWCGPCKAIA----PVLEELAEEYPK---VKFVKVDVD----------------- 50

Query: 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA 287
                  +L   + ++ IP  +           NGKE+  + GA           E+E  
Sbjct: 51  ----ENPELAEEYGVRSIPTFLFF--------KNGKEVDRVVGADPK-------EELEEF 91

Query: 288 LK 289
           L+
Sbjct: 92  LE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 146 DYVLSR-DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVL 204
           ++VL+  + +KI + +L GK + L F   WC PC      + E+Y + K       E++ 
Sbjct: 43  NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK---EKGVEIIA 99

Query: 205 VSTDRDH-------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 257
           V+ D            + L   +    AI   D+ RQ +   + +  +P   LI  DGK 
Sbjct: 100 VNVDETELAVKNFVNRYGLTFPV----AI---DKGRQVI-DAYGVGPLPTTFLIDKDGKV 151

Query: 258 IS----TNGKEMISLY 269
           +        +E +  Y
Sbjct: 152 VKVITGEMTEEQLEEY 167

Length = 173

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
          V LS   GK + + F A+WC PC+   P+L  L    +  G  +EV+ ++ D
Sbjct: 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVD 61

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 16/107 (14%)

Query: 160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS----TDRDHKEFD 215
            L+GK + +YF A WCP CR FTS  +         A   + VV V+     D     F 
Sbjct: 17  SLSGKPVLVYFWATWCPVCR-FTSPTVNQL------AAD-YPVVSVALRSGDDGAVARF- 67

Query: 216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 262
           +      +  I   D     +   + +   PA+V++ P G    T G
Sbjct: 68  MQKKGYGFPVINDPD---GVISARWGVSVTPAIVIVDPGGIVFVTTG 111

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 32/127 (25%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D   +++SEL GK + + F A WCPPCR+    L E+  E         EVV V+ D ++
Sbjct: 21  DGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEY----GGDVEVVAVNVDDEN 76

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271
            +          LA  +             ++ IP L+L          +GKE+  L G 
Sbjct: 77  PD----------LAAEFGV----------AVRSIPTLLLFK--------DGKEVDRLVGG 108

Query: 272 KAFPFTE 278
           K  P   
Sbjct: 109 KVLPKEA 115

Length = 127

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 33 GKVPLSSCGGKTICLFF-SANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
           +V LS   GK + LFF   ++   C T  P L  LY+  +  G   EV+ +S D
Sbjct: 16 KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGV--EVLGVSVD 68

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 42  GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101
           GK + + F+   C  CK    +L++  D          VI+++ D  +   +   + +  
Sbjct: 5   GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSE 64

Query: 102 LAVPFDETLHKKLRIR 117
                   L +K  +R
Sbjct: 65  KE------LARKYGVR 74

Length = 105

>gnl|CDD|202539 pfam03107, C1_2, C1 domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 316 YVCDCCKMR-GRFWAFSCDVCNYDLHPKCV 344
           + C  C+ +   F+ ++C  C + LH +C 
Sbjct: 1   FWCSVCRRKIDGFYFYTCKKCCFTLHVRCA 30

This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins. Length = 30

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 18/74 (24%), Positives = 27/74 (36%)

Query: 16 FLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG 75
          FL    +    F       + LS   GK + + F A WC PC+   P L +L +      
Sbjct: 6  FLLGELATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDV 65

Query: 76 TELEVIFISFDHDE 89
            + V     + D 
Sbjct: 66 EVVAVNVDDENPDL 79

Length = 127

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
           K + + F A WC PCK   P L +L           +V F+  D DEN
Sbjct: 10 AKPVVVDFWAPWCGPCKAIAPVLEEL------AEEYPKVKFVKVDVDEN 52

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.92
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.91
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.9
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.86
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.85
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.84
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.83
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.83
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.83
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.83
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.81
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.81
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.81
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.81
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.81
PTZ00056	199	glutathione peroxidase; Provisional	99.81
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.8
PLN02412	167	probable glutathione peroxidase	99.8
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.8
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.8
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.8
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.79
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.79
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.79
PTZ00102	477	disulphide isomerase; Provisional	99.78
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.78
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.78
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.77
PTZ00256	183	glutathione peroxidase; Provisional	99.76
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.76
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.76
PRK13190	202	putative peroxiredoxin; Provisional	99.75
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.75
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.74
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.74
PRK13599	215	putative peroxiredoxin; Provisional	99.74
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.73
PRK15000	200	peroxidase; Provisional	99.73
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.72
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.72
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.72
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.71
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.71
PRK13191	215	putative peroxiredoxin; Provisional	99.7
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.7
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.69
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.69
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.69
PRK13189	222	peroxiredoxin; Provisional	99.68
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.66
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.64
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.64
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.59
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.58
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.58
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.57
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.56
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.56
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.55
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.54
PHA02278	103	thioredoxin-like protein	99.53
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.53
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.52
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.52
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.52
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.5
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.49
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.48
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.46
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.46
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.45
PHA02278	103	thioredoxin-like protein	99.44
PRK09381	109	trxA thioredoxin; Provisional	99.44
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.43
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.43
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.43
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.41
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.4
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.4
PRK10996	139	thioredoxin 2; Provisional	99.39
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.38
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.38
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.38
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.37
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.37
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.36
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.36
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.36
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.36
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.36
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.35
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.35
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.35
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.35
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.35
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.34
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.34
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.34
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.33
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.33
PTZ00062	204	glutaredoxin; Provisional	99.33
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.33
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.32
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.32
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.31
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.31
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.31
PTZ00056	199	glutathione peroxidase; Provisional	99.3
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.29
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.29
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.29
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.28
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.28
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.27
PTZ00051	98	thioredoxin; Provisional	99.27
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.26
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.26
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.25
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.25
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.24
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.23
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.22
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.22
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.22
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.21
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.21
PLN02412	167	probable glutathione peroxidase	99.21
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.19
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.19
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.18
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.18
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.18
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.18
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.16
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.16
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.16
PRK09381	109	trxA thioredoxin; Provisional	99.15
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.15
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.13
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.13
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.13
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.13
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.12
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.12
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.12
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.11
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.11
PTZ00062	204	glutaredoxin; Provisional	99.11
PTZ00256	183	glutathione peroxidase; Provisional	99.11
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.1
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.1
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.09
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.09
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.08
PRK10996	139	thioredoxin 2; Provisional	99.08
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.08
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.08
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.07
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.06
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.06
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.05
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	99.05
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.05
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.04
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.03
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.02
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.02
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.02
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.01
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.01
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.01
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.01
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.0
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	98.99
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.99
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.99
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.98
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.98
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.98
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.96
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.95
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.95
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.94
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.94
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.93
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.93
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.93
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.92
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.92
PLN02309	457	5'-adenylylsulfate reductase	98.92
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.92
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.91
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.91
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.9
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.9
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.89
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.89
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.89
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.89
PTZ00102	477	disulphide isomerase; Provisional	98.88
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.88
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.87
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.87
PTZ00051	98	thioredoxin; Provisional	98.86
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.86
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.85
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.84
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.84
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.83
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	98.83
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.83
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.83
PLN02309	457	5'-adenylylsulfate reductase	98.82
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.82
PHA02125	75	thioredoxin-like protein	98.81
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.8
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.8
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.78
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.78
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.76
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.76
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.74
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.74
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.73
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.73
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	98.71
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.71
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.7
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.68
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.68
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.67
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.66
PF13728	215	TraF: F plasmid transfer operon protein	98.63
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.63
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.62
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.62
PRK13599	215	putative peroxiredoxin; Provisional	98.6
PRK13190	202	putative peroxiredoxin; Provisional	98.6
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.58
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.58
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.56
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.56
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.55
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.55
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.51
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.51
PRK13191	215	putative peroxiredoxin; Provisional	98.51
smart00594	122	UAS UAS domain.	98.51
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.51
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	98.49
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.49
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	98.49
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.49
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.48
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.44
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.43
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.42
PHA02125	75	thioredoxin-like protein	98.41
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.4
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.4
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.4
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.38
PRK13189	222	peroxiredoxin; Provisional	98.38
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	98.38
PRK15000	200	peroxidase; Provisional	98.37
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.35
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.29
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.26
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.21
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.21
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.2
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.12
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.11
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	98.07
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.05
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.03
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	97.92
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.9
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	97.9
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.87
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.85
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.84
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.84
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.81
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.78
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.73
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.68
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.68
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.63
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.62
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	97.61
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.56
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.54
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.54
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.52
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	97.51
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.43
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.41
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.4
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.36
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.36
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.29
smart00594	122	UAS UAS domain.	97.29
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.27
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.26
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	97.23
PRK11200	85	grxA glutaredoxin 1; Provisional	97.21
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.21
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	97.2
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.14
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	97.11
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	97.1
PRK11200	85	grxA glutaredoxin 1; Provisional	97.08
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	96.95
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.9
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.9
PF13728	215	TraF: F plasmid transfer operon protein	96.88
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	96.8
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.8
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	96.79
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	96.75
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	96.69
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	96.68
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	96.65
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.64
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	96.64
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.63
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	96.63
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.61
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	96.6
COG1331	667	Highly conserved protein containing a thioredoxin	96.55
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.44
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.42
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	96.4
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	96.32
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	96.31
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.29
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	96.28
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	96.25
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.24
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.19
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.16
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.12
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	96.06
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.0
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	95.86
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	95.86
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.86
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	95.72
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.67
KOG3425	128	consensus Uncharacterized conserved protein [Funct	95.6
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	95.55
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	95.55
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	95.46
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	95.43
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	95.4
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	95.36
PHA03050	108	glutaredoxin; Provisional	95.36
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.36
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.19
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	95.18
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.11
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	95.1
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	95.0
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.9
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	94.9
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	94.85
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	94.82
KOG4582	278	consensus Uncharacterized conserved protein, conta	94.81
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	94.79
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	94.78
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	94.65
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	94.61
PHA03050	108	glutaredoxin; Provisional	94.25
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	94.01
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	94.01
PRK10824	115	glutaredoxin-4; Provisional	93.93
PRK10329	81	glutaredoxin-like protein; Provisional	93.92
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	93.91
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	93.9
PRK10329	81	glutaredoxin-like protein; Provisional	93.88
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	93.77
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	93.62
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	93.55
PRK10638	83	glutaredoxin 3; Provisional	93.5
COG2143	182	Thioredoxin-related protein [Posttranslational mod	93.4
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	93.37
KOG1672	211	consensus ATP binding protein [Posttranslational m	93.35
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	93.33
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	93.15
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	93.14
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	93.11
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	92.99
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	92.78
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	92.77
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	92.64
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	92.63
PRK10638	83	glutaredoxin 3; Provisional	92.63
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	92.56
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	92.43
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	92.34
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	91.64
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	91.62
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	91.48
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	91.48
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	90.59
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	90.52
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	90.4
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	90.4
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	90.32
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	90.05
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	90.02
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	90.02
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	90.0
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	89.98
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	89.93
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	89.78
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	89.58
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	89.42
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	88.39
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	88.36
COG1331	667	Highly conserved protein containing a thioredoxin	88.24
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	87.89
PRK10824	115	glutaredoxin-4; Provisional	87.58
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	87.07
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	86.66
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	86.3
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	86.07
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	84.12
KOG1672	211	consensus ATP binding protein [Posttranslational m	83.39
PHA03075	123	glutaredoxin-like protein; Provisional	83.24
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	82.97
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	82.61
KOG4301	434	consensus Beta-dystrobrevin [Cytoskeleton]	81.87
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	81.38
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	80.21

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.92  E-value=5.8e-25  Score=176.39  Aligned_cols=130  Identities=49%  Similarity=1.013  Sum_probs=118.5

Q ss_pred             CcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCcee
Q 018726          146 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLA  225 (351)
Q Consensus       146 df~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~  225 (351)
                      ||..+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++ .+.+++|++|++|.+.+++.++++.++|..
T Consensus         1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vv~is~d~~~~~~~~~~~~~~~~~   79 (131)
T cd03009           1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-SGKNFEIVFISWDRDEESFNDYFSKMPWLA   79 (131)
T ss_pred             CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHcCCeeE
Confidence            4555889999999999999999999999999999999999999999975 234799999999999999999999999988


Q ss_pred             eccCc-hhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCC
Q 018726          226 IPYED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPF  276 (351)
Q Consensus       226 ~~~~~-d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~  276 (351)
                      +++.. +....+++.|++.++|+++|||++|+|+.++++.++..+|+.+|||
T Consensus        80 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          80 VPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            88766 5567899999999999999999999999999999999999999996

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.91  E-value=1.3e-24  Score=174.79  Aligned_cols=119  Identities=28%  Similarity=0.564  Sum_probs=103.8

Q ss_pred             cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcc----cCCceEEEEEeCCCCHHHHHhhhccCC--ceeec
Q 018726          154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT----ANHCFEVVLVSTDRDHKEFDLNHSIMP--WLAIP  227 (351)
Q Consensus       154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~----~~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~  227 (351)
                      ..+++++++||+++|+|||+||++|++++|.|.++++++++.    ...+++||+|+.|.+.+++.++++.++  |..+|
T Consensus        16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p   95 (146)
T cd03008          16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP   95 (146)
T ss_pred             ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence            456788999999999999999999999999999999988752    124699999999998888999999887  77888


Q ss_pred             cCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCc
Q 018726          228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK  272 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~  272 (351)
                      +..+....+++.|++.++|+++|||++|+|+.++++..+..+|..
T Consensus        96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~  140 (146)
T cd03008          96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPA  140 (146)
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHH
Confidence            877666799999999999999999999999999987776666644

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.90  E-value=3.1e-23  Score=166.48  Aligned_cols=126  Identities=48%  Similarity=0.944  Sum_probs=109.4

Q ss_pred             ecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccC-Cceeec
Q 018726          149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM-PWLAIP  227 (351)
Q Consensus       149 ~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~  227 (351)
                      ++.+ +++++++++||++||+||++||++|+.++|.|+++++++++ ...+++|++|++|.+.+++.++++.+ +|..++
T Consensus         4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           4 LDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-EGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh-cCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            3444 69999999999999999999999999999999999999975 12479999999999988999999988 688888


Q ss_pred             cCc-hhhHHHHHHcCcCceeeEEEECCCCceEeccccceeec-cCCcCCCC
Q 018726          228 YED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL-YGAKAFPF  276 (351)
Q Consensus       228 ~~~-d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~-~g~~~~p~  276 (351)
                      +.. +....+.+.|++.++|+++|||++|+|+.+++...+.. +|+.+|||
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            765 34568889999999999999999999999998776665 88888886

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.86  E-value=2.1e-21  Score=158.69  Aligned_cols=117  Identities=28%  Similarity=0.489  Sum_probs=102.8

Q ss_pred             hhccCCCcEe-c--CCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          140 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       140 ~g~~~pdf~~-~--~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      +|+++|+|.+ +  .+|+++++++++||+++|+||++ |||+|+.++|.+.++++.+++   .++.+++|+.+.+.. ..
T Consensus         2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~---~~v~~v~v~~~~~~~-~~   77 (146)
T PF08534_consen    2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD---KGVDVVGVSSDDDPP-VR   77 (146)
T ss_dssp             TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTCEEEEEEESSSHH-HH
T ss_pred             CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc---CceEEEEecccCCHH-HH
Confidence            5889999998 5  99999999999999999999999 999999999999999999886   789999999998766 66


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcC---------ceeeEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~---------~~P~~~lid~~G~v~~~~  261 (351)
                      ++++..+ ..+++..|....+.+.|++.         ++|+++|||++|+|++++
T Consensus        78 ~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~  131 (146)
T PF08534_consen   78 EFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH  131 (146)
T ss_dssp             HHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred             HHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence            6666644 56677777788999999988         999999999999999984

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=180.62  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHK  212 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~  212 (351)
                      ..+.++|+|++ +.+|+.+.++  +||+|||+|||+||++|+.++|.|++++++++.   +++.||+|+++     .+..
T Consensus        33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~  107 (521)
T PRK14018         33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDG  107 (521)
T ss_pred             cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHH
Confidence            34568999999 9999999988  799999999999999999999999999999875   67999999873     3446


Q ss_pred             HHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          213 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++++.+++.++|+..|....+++.|+|.++|+++|||++|+|+.+
T Consensus       108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~  155 (521)
T PRK14018        108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI  155 (521)
T ss_pred             HHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence            777777777777788888888899999999999999999999999988

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.84  E-value=1.4e-20  Score=149.32  Aligned_cols=116  Identities=30%  Similarity=0.565  Sum_probs=104.1

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      +|+++|+|++ +.+|+.+++++++||+++|.||++ ||++|+..++.|+++++++++   .++.+++|+.|. .++.+++
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~d~-~~~~~~~   76 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGISTDD-PEEIKQF   76 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSS-HHHHHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeeccccc-ccchhhh
Confidence            5899999999 999999999999999999999999 999999999999999999986   799999999974 4466666


Q ss_pred             hccCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          218 HSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                      .+..+ ..+|+..|....+.+.|++.      .+|++||||++|+|+++
T Consensus        77 ~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   77 LEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             hhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            66544 66777888889999999998      99999999999999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.83  E-value=1.6e-20  Score=159.33  Aligned_cols=117  Identities=20%  Similarity=0.192  Sum_probs=96.2

Q ss_pred             HHhhhccCCCcEe-cCC--Ccceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          137 EQLLAIEGRDYVL-SRD--HRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~--g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      ...+|.++|+|++ +.+  |+.++++.+ +||+++|+||++||++|+.++|.|+++++       .+++|++|+.+++.+
T Consensus        38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~~~~  110 (185)
T PRK15412         38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKDDRQ  110 (185)
T ss_pred             hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCCCHH
Confidence            3567899999999 777  466666665 79999999999999999999999987743       468899999988887


Q ss_pred             HHHhhhccCCceeec-cCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      +..++++.++. .+| ...|....+.+.|++.++|++|+||++|+|++++
T Consensus       111 ~~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~  159 (185)
T PRK15412        111 KAISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH  159 (185)
T ss_pred             HHHHHHHHcCC-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence            78888876652 333 3446667888999999999999999999999884

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.83  E-value=2.8e-20  Score=145.34  Aligned_cols=110  Identities=20%  Similarity=0.350  Sum_probs=94.1

Q ss_pred             CCcEe-cCCCcceeecccC-CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCC
Q 018726          145 RDYVL-SRDHRKITVSELA-GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP  222 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~-gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~  222 (351)
                      |+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++.    .++.++.++ +.+.++..++.+.++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~-~~~~~~~~~~~~~~~   75 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS-DGEKAEHQRFLKKHG   75 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe-CCCHHHHHHHHHHhC
Confidence            78888 8999999999997 9999999999999999999999999988875    468888775 667778888888777


Q ss_pred             ceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       223 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ...+|...+  ..+.+.|++.++|++++||++|+|++++
T Consensus        76 ~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          76 LEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             CCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            545565443  4688999999999999999999999874

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.83  E-value=3.2e-20  Score=147.55  Aligned_cols=121  Identities=45%  Similarity=0.849  Sum_probs=111.2

Q ss_pred             cCCCcceeec-ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc--CCceee
Q 018726          150 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI--MPWLAI  226 (351)
Q Consensus       150 ~~~g~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~~  226 (351)
                      ..+|..+..+ .++||+|+++|.|.||+||+.+.|.|.++|++.++ .+..++||+||.|++.+++..++..  .+|+.+
T Consensus        19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~-~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i   97 (157)
T KOG2501|consen   19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD-NAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI   97 (157)
T ss_pred             ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh-cCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence            6777777766 68999999999999999999999999999999986 4457999999999999999999984  669999


Q ss_pred             ccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCC
Q 018726          227 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA  271 (351)
Q Consensus       227 ~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~  271 (351)
                      |+.++..+++.++|++.++|++++++++|+++.++|+..+...|.
T Consensus        98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~  142 (157)
T KOG2501|consen   98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS  142 (157)
T ss_pred             cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence            999999999999999999999999999999999999999888884

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.83  E-value=5.6e-20  Score=138.84  Aligned_cols=93  Identities=41%  Similarity=0.833  Sum_probs=85.0

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccC--CceeeccCchhhHHHHHHc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM--PWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~  240 (351)
                      ||+++|+||++||++|++++|.|.++++++++  +.+++||+|+.|.+.++++++++..  +|..+++..+....+.+.|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   78 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKY   78 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHC
Confidence            79999999999999999999999999999983  4899999999999999999999977  7999999998888999999


Q ss_pred             CcCceeeEEEECCCCce
Q 018726          241 NIKGIPALVLIGPDGKT  257 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v  257 (351)
                      ++.++|+++|+|++|+|
T Consensus        79 ~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   79 GINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             T-TSSSEEEEEETTSBE
T ss_pred             CCCcCCEEEEECCCCCC
Confidence            99999999999999987

...

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.81  E-value=7.7e-20  Score=145.78  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=96.4

Q ss_pred             cCCCcEe-cCCC--cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          143 EGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       143 ~~pdf~~-~~~g--~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      ++|+|++ +.+|  +.+++++++||+++|+||++||++|+.++|.|+++.+++      ++.|++|+.+.+.++++++++
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------~~~vv~v~~~~~~~~~~~~~~   75 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------RVPIYGINYKDNPENALAWLA   75 (127)
T ss_pred             CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------CcEEEEEECCCCHHHHHHHHH
Confidence            5799999 8888  889999999999999999999999999999999987653      388999999888888888887


Q ss_pred             cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .......++..|....+++.|++.++|++++||++|+|+++
T Consensus        76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~  116 (127)
T cd03010          76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK  116 (127)
T ss_pred             hcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence            66543223445667789999999999999999999999988

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.81  E-value=6.2e-20  Score=159.38  Aligned_cols=121  Identities=19%  Similarity=0.263  Sum_probs=95.3

Q ss_pred             HHhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------
Q 018726          137 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------  208 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------  208 (351)
                      ....|..+|+|++ +.+|+.+++++++||++||+||++||++|..++|.|++++++|++   .+++|++|+++       
T Consensus        72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~  148 (236)
T PLN02399         72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEP  148 (236)
T ss_pred             chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCC
Confidence            4457889999999 999999999999999999999999999999999999999999986   78999999975       


Q ss_pred             CCHHHHHhhh-ccCCceeeccCc--hhhH-HHHHHcC-------------cCceeeEEEECCCCceEecc
Q 018726          209 RDHKEFDLNH-SIMPWLAIPYED--RARQ-DLCRIFN-------------IKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       209 ~~~~~~~~~~-~~~~~~~~~~~~--d~~~-~~~~~~~-------------i~~~P~~~lid~~G~v~~~~  261 (351)
                      .+.++..+++ +.++ ..+|+..  |.+. .+...|+             +...|++||||++|+|+++.
T Consensus       149 ~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~  217 (236)
T PLN02399        149 GSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY  217 (236)
T ss_pred             CCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence            2446677776 3333 4455542  2212 2322222             34579999999999999983

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.81  E-value=3.1e-19  Score=149.81  Aligned_cols=147  Identities=16%  Similarity=0.294  Sum_probs=116.3

Q ss_pred             hccCCCcEe-cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726          141 AIEGRDYVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  211 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  211 (351)
                      |..+|+|++ +.+|+.++++++ +||++||+||++||+.|..+++.|.+++++|++   .++.|++|++|.       +.
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~   77 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSP   77 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCH
Confidence            567899999 999999999998 899999999999999999999999999999986   789999999985       46


Q ss_pred             HHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHh
Q 018726          212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  291 (351)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~  291 (351)
                      +++.++.+.++. .+++..|....+.+.|++..+|+++|||++|+|+++.+..-  .++.   ........++.++|+..
T Consensus        78 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~~~~i~~~  151 (171)
T cd02969          78 ENMKAKAKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDLRAALDAL  151 (171)
T ss_pred             HHHHHHHHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHHHHHHHHH
Confidence            788888876663 47777787889999999999999999999999998743110  0110   01223345566666665


Q ss_pred             cCcCC
Q 018726          292 GDALP  296 (351)
Q Consensus       292 ~~~~p  296 (351)
                      +.+-+
T Consensus       152 l~~~~  156 (171)
T cd02969         152 LAGKP  156 (171)
T ss_pred             HcCCC
Confidence            55443

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.81  E-value=2.9e-19  Score=150.28  Aligned_cols=119  Identities=24%  Similarity=0.433  Sum_probs=107.5

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      ..+|..+|+|++ +.+|+.+++++++||+++|+||++||++|+.+.+.|.++++++++   .++.+++|+.|.+.+++..
T Consensus        35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~d~~~~~~~~  111 (173)
T PRK03147         35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNVDETELAVKN  111 (173)
T ss_pred             cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEcCCCHHHHHH
Confidence            446889999999 999999999999999999999999999999999999999999986   6799999999988888888


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+.++ ..+++..|....+.+.|++.++|+++++|++|+++..
T Consensus       112 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~  154 (173)
T PRK03147        112 FVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV  154 (173)
T ss_pred             HHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence            888766 4566666777899999999999999999999999976

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.81  E-value=1.2e-19  Score=144.38  Aligned_cols=105  Identities=21%  Similarity=0.297  Sum_probs=93.6

Q ss_pred             CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHHHHHhhhccCCceeec
Q 018726          153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~  227 (351)
                      ++++++++++||++||+||++||++|+.++|.|+++++++++   .++.|++|+.+     .+.++++++++.++ +.+|
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p   88 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP   88 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence            578999999999999999999999999999999999999986   78999999863     45677888887766 4678


Q ss_pred             cCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      +..|....+.+.|++.++|+++|||++|+|++++
T Consensus        89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~  122 (126)
T cd03012          89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH  122 (126)
T ss_pred             EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence            8888888999999999999999999999999884

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.81  E-value=1.8e-19  Score=154.15  Aligned_cols=120  Identities=13%  Similarity=0.168  Sum_probs=93.1

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------C
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------R  209 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~  209 (351)
                      ...+..+|+|++ +.+|+.+++++++||++||+|||+||++|+.++|.|++++++|++   .+++|++|+++       .
T Consensus        13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d   89 (199)
T PTZ00056         13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFP   89 (199)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCC
Confidence            345678999999 999999999999999999999999999999999999999999986   78999999974       3


Q ss_pred             CHHHHHhhhccCCceeeccCch------hhHH--------HHHHcCcC----ce---eeEEEECCCCceEecc
Q 018726          210 DHKEFDLNHSIMPWLAIPYEDR------ARQD--------LCRIFNIK----GI---PALVLIGPDGKTISTN  261 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~d------~~~~--------~~~~~~i~----~~---P~~~lid~~G~v~~~~  261 (351)
                      +.++++++++..+ +.+|+..+      ....        +...|+..    ++   |++||||++|+|+.+.
T Consensus        90 ~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~  161 (199)
T PTZ00056         90 NTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF  161 (199)
T ss_pred             CHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence            4567888877655 34454321      1111        22234332    22   4799999999999874

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.80  E-value=9e-20  Score=153.16  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             HhhhccCCCcEe-cCCCc--ceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          138 QLLAIEGRDYVL-SRDHR--KITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~--~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      ..+|.++|+|++ +.+|+  .++++++ +||+++|+||++||++|+.++|.++++++       .+++|++|+.+...++
T Consensus        34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~  106 (173)
T TIGR00385        34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQN  106 (173)
T ss_pred             hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHH
Confidence            467999999999 88886  4555565 78999999999999999999999887753       4588999999877777


Q ss_pred             HHhhhccCCceeec-cCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ..++++.++. .++ +..|....+.+.|++.++|++++||++|+|++++
T Consensus       107 ~~~~~~~~~~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~  154 (173)
T TIGR00385       107 ALKFLKELGN-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH  154 (173)
T ss_pred             HHHHHHHcCC-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence            7777776653 343 3456678899999999999999999999999883

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PLN02412 probable glutathione peroxidase

Probab=99.80  E-value=1.1e-19  Score=151.56  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=91.1

Q ss_pred             ccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHH
Q 018726          142 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKE  213 (351)
Q Consensus       142 ~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~  213 (351)
                      ..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|.       +.++
T Consensus         7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~   83 (167)
T PLN02412          7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEE   83 (167)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHH
Confidence            56899999 999999999999999999999999999999999999999999986   789999999863       3445


Q ss_pred             HHhhh-ccCCceeeccCc--hhh-HHHHHHcC-------------cCceeeEEEECCCCceEecc
Q 018726          214 FDLNH-SIMPWLAIPYED--RAR-QDLCRIFN-------------IKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~-~~~~~~~~~~~~--d~~-~~~~~~~~-------------i~~~P~~~lid~~G~v~~~~  261 (351)
                      ..+++ +.++ +.+|...  |.. ....+.|+             +.+.|++||||++|+|+.+.
T Consensus        84 ~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~  147 (167)
T PLN02412         84 IQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY  147 (167)
T ss_pred             HHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence            55554 4433 4455543  122 13333332             56689999999999999983

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.80  E-value=3.7e-19  Score=144.88  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=99.0

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      +|.++|+|++ +.+|+.+++++++||++||+||++| |++|+.+++.|+++++++     .++.|++|++|. .....++
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~~~vi~Is~d~-~~~~~~~   75 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-----DNTVVLTISADL-PFAQKRW   75 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-----CCCEEEEEECCC-HHHHHHH
Confidence            5889999999 9999999999999999999999999 689999999999999986     358999999986 4455666


Q ss_pred             hccCCceeeccCchhh-HHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726          218 HSIMPWLAIPYEDRAR-QDLCRIFNIKG------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~-~~~~~~~~i~~------~P~~~lid~~G~v~~~~  261 (351)
                      .+.++...++...|.. ..+.+.||+..      .|++||||++|+|++.+
T Consensus        76 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~  126 (143)
T cd03014          76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE  126 (143)
T ss_pred             HHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence            6666544677777765 89999999863      79999999999999884

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.80  E-value=4.1e-19  Score=148.13  Aligned_cols=118  Identities=13%  Similarity=0.135  Sum_probs=100.6

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      ..+|.++|+|++ +.+|+.+++++++||++||+||++| |++|..+++.|+++++++     .+++|++|+.|. .....
T Consensus        18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-----~~~~vv~vs~D~-~~~~~   91 (167)
T PRK00522         18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-----DNTVVLCISADL-PFAQK   91 (167)
T ss_pred             CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEeCCC-HHHHH
Confidence            346999999999 8999999999999999999999999 999999999999998887     368999999985 34556


Q ss_pred             hhhccCCceeeccCch-hhHHHHHHcCcCcee---------eEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d-~~~~~~~~~~i~~~P---------~~~lid~~G~v~~~~  261 (351)
                      ++.+..+...+++..| ....+++.||+...|         +++|||++|+|++.+
T Consensus        92 ~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~  147 (167)
T PRK00522         92 RFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE  147 (167)
T ss_pred             HHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence            6776666444677777 456999999998777         999999999999884

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.80  E-value=7.6e-19  Score=149.44  Aligned_cols=132  Identities=18%  Similarity=0.194  Sum_probs=102.2

Q ss_pred             hhhccCCCcEe-cCCCcceeec--ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~--~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      .+|.++|+|++ +.+|+.++++  +++||+++|+||++||++|+.++|.+.++++++      ++.+++|+.| +.++..
T Consensus        47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~-~~~~~~  119 (189)
T TIGR02661        47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDG-TPAEHR  119 (189)
T ss_pred             CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCC-CHHHHH
Confidence            57899999999 9999999994  579999999999999999999999999987643      3568888854 566777


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHh
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  291 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~  291 (351)
                      ++.+.++....++.  ...++.+.|++.++|++++||++|+|++++.            ....+.++++.++++..
T Consensus       120 ~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l~~~  181 (189)
T TIGR02661       120 RFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEADREG  181 (189)
T ss_pred             HHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHHHcC
Confidence            77776553211222  2468889999999999999999999998631            12445677776665543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.79  E-value=1.2e-18  Score=146.31  Aligned_cols=119  Identities=18%  Similarity=0.296  Sum_probs=99.1

Q ss_pred             hhccCCCcEe-cCCC----cceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          140 LAIEGRDYVL-SRDH----RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g----~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      +|+++|+|++ +.+|    +.+++++++||++||+|| ++||++|..+++.|++++++|.+   .++.|++|++|...  
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~d~~~~~   77 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVSTDSHFSH   77 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEecCCHHHH
Confidence            4889999999 7776    789999999999999999 89999999999999999999986   78999999998643  


Q ss_pred             HHHHhhhcc---CCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ..+.+....   ..-..+++..|....+++.||+.      .+|+++|||++|+|++++
T Consensus        78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~  136 (173)
T cd03015          78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT  136 (173)
T ss_pred             HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            234333321   11245777778889999999986      688999999999999984

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.79  E-value=1.6e-19  Score=148.40  Aligned_cols=113  Identities=15%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             CCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726          144 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD  215 (351)
Q Consensus       144 ~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~  215 (351)
                      .|+|++ +.+|+.+++++++||++||+||++||+ |+.++|.|++++++|++   .++.|++|+++.       +.++.+
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~   77 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD---RGLVVLGFPCNQFGGQEPGSNEEIK   77 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC---CCEEEEEeccCccccCCCCCHHHHH
Confidence            589999 999999999999999999999999999 99999999999999986   789999999753       346777


Q ss_pred             hhhcc-CCceeeccCchh--hHH-HHHHcC--cCcee-----------eEEEECCCCceEecc
Q 018726          216 LNHSI-MPWLAIPYEDRA--RQD-LCRIFN--IKGIP-----------ALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~-~~~~~~~~~~d~--~~~-~~~~~~--i~~~P-----------~~~lid~~G~v~~~~  261 (351)
                      ++++. .+ +.+|+..|.  ... ..+.|+  +.++|           ++||||++|+|+++.
T Consensus        78 ~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~  139 (152)
T cd00340          78 EFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF  139 (152)
T ss_pred             HHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence            88765 44 456665431  222 344555  35566           899999999999983

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.79  E-value=5.9e-19  Score=145.51  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=101.1

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      +|..+|+|++ +.+|+.+++++++||++||+||++ ||+.|..+++.|.++++++++   .+++||+|+.| +.+++.++
T Consensus         6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~d-~~~~~~~~   81 (154)
T PRK09437          6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGISTD-KPEKLSRF   81 (154)
T ss_pred             CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCC-CHHHHHHH
Confidence            5889999999 999999999999999999999987 677799999999999999986   78999999998 45777777


Q ss_pred             hccCCceeeccCchhhHHHHHHcCcCce------------eeEEEECCCCceEec
Q 018726          218 HSIMPWLAIPYEDRARQDLCRIFNIKGI------------PALVLIGPDGKTIST  260 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~------------P~~~lid~~G~v~~~  260 (351)
                      .+.++ ..+|+..|....+.+.||+...            |+++|||++|+|++.
T Consensus        82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  135 (154)
T PRK09437         82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV  135 (154)
T ss_pred             HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence            77665 4566777777889999998654            788999999999988

>PTZ00102 disulphide isomerase; Provisional

Probab=99.78  E-value=2.4e-18  Score=167.59  Aligned_cols=72  Identities=18%  Similarity=0.348  Sum_probs=59.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .||.++|+|||+||++|+.+.|.++++++.+++  ...+.+..++.+..                       ...++.|+
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~~~~-----------------------~~~~~~~~  428 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNGTAN-----------------------ETPLEEFS  428 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEECCCC-----------------------ccchhcCC
Confidence            478999999999999999999999999998873  24577777777653                       45678899


Q ss_pred             cCceeeEEEECCCCceE
Q 018726          242 IKGIPALVLIGPDGKTI  258 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~  258 (351)
                      +.++||+++++++|++.
T Consensus       429 v~~~Pt~~~~~~~~~~~  445 (477)
T PTZ00102        429 WSAFPTILFVKAGERTP  445 (477)
T ss_pred             CcccCeEEEEECCCcce
Confidence            99999999997766653

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.78  E-value=1.6e-18  Score=142.00  Aligned_cols=117  Identities=18%  Similarity=0.232  Sum_probs=99.8

Q ss_pred             hhccCCCcEe-cCCCcceeecccCC-cEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~g-k~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      +|.++|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|+++++++++   .++.+++|+.|. .+..++
T Consensus         3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~-~~~~~~   78 (149)
T cd03018           3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISVDS-PFSLRA   78 (149)
T ss_pred             CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecCCC-HHHHHH
Confidence            5889999999 89999999999999 99888887 99999999999999999999986   789999999885 455666


Q ss_pred             hhccCCceeeccCchhh--HHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDRAR--QDLCRIFNIKG------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~--~~~~~~~~i~~------~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++ ..+|+..|..  ..+++.|++..      .|+++|||++|+|++++
T Consensus        79 ~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~  130 (149)
T cd03018          79 WAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW  130 (149)
T ss_pred             HHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence            666655 4567767755  88999999873      34899999999999984

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR03137 AhpC peroxiredoxin

Probab=99.78  E-value=2.2e-18  Score=146.36  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=98.5

Q ss_pred             hhhccCCCcEe-c-CCCc--ceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          139 LLAIEGRDYVL-S-RDHR--KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       139 ~~g~~~pdf~~-~-~~g~--~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      .+|+++|+|++ + .+|+  .+++++++||++||+|| ++||++|..+++.|++++++|.+   .+++|++|+.|...  
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~D~~~~~   79 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVSTDTHFVH   79 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence            57899999999 6 4665  67888999999999999 99999999999999999999986   78999999999642  


Q ss_pred             HHHHhhhccCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      .+|........-+.+|+..|....+++.||+.      ..|++||||++|+|++..
T Consensus        80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137        80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence            23333322222245677788888999999986      479999999999999883

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.77  E-value=1.6e-18  Score=140.51  Aligned_cols=114  Identities=25%  Similarity=0.405  Sum_probs=101.2

Q ss_pred             cCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726          143 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI  220 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  220 (351)
                      ++|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++++   .+++|++|++|. .+.+.++.+.
T Consensus         2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~~~~~~   77 (140)
T cd03017           2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSPDS-VESHAKFAEK   77 (140)
T ss_pred             CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH
Confidence            5799999 9999999999999999999999 58999999999999999999986   789999999984 5677777776


Q ss_pred             CCceeeccCchhhHHHHHHcCcCce---------eeEEEECCCCceEecc
Q 018726          221 MPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTISTN  261 (351)
Q Consensus       221 ~~~~~~~~~~d~~~~~~~~~~i~~~---------P~~~lid~~G~v~~~~  261 (351)
                      ++ ..+|+..|....+.+.||+...         |++++||++|+|+++.
T Consensus        78 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~  126 (140)
T cd03017          78 YG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW  126 (140)
T ss_pred             hC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence            66 4577777878899999999988         9999999999999883

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.76  E-value=2e-18  Score=146.21  Aligned_cols=117  Identities=18%  Similarity=0.252  Sum_probs=88.8

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  211 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  211 (351)
                      +..+|+|++ +.+|+.+++++++||++ |+.|||+||++|+.++|.|++++++|++   .++.|++|++|.       +.
T Consensus        17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~   93 (183)
T PTZ00256         17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDE   93 (183)
T ss_pred             CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCH
Confidence            456899999 99999999999999965 5566999999999999999999999986   789999999752       33


Q ss_pred             HHHHhhhc-cCCceeeccCch--hhH----HHH------------HHcCcCceee---EEEECCCCceEecc
Q 018726          212 KEFDLNHS-IMPWLAIPYEDR--ARQ----DLC------------RIFNIKGIPA---LVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~-~~~~~~~~~~~d--~~~----~~~------------~~~~i~~~P~---~~lid~~G~v~~~~  261 (351)
                      ++..+++. .++ +.+|+..|  .+.    .+.            ..+++.++|+   +||||++|+|+++.
T Consensus        94 ~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~  164 (183)
T PTZ00256         94 PEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF  164 (183)
T ss_pred             HHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence            56666654 333 34555422  111    122            1235678995   69999999999984

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.76  E-value=3.7e-18  Score=148.39  Aligned_cols=173  Identities=13%  Similarity=0.121  Sum_probs=114.2

Q ss_pred             CCCCeEEEEEeC---CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH-H
Q 018726           40 CGGKTICLFFSA---NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH-K  112 (351)
Q Consensus        40 ~~gk~v~v~F~a---~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~-~  112 (351)
                      .++...++.|++   +||++|+.+.|.++++++++. .   +++.++++|.++. ...+.+++..+|++.+  +|+.. .
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~---~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~   92 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-K---LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGI   92 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-C---ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEE
Confidence            344445666877   999999999999999999873 2   5788888886543 5777778888888887  55554 2


Q ss_pred             HHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCc-ceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH
Q 018726          113 KLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR-KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE  191 (351)
Q Consensus       113 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~  191 (351)
                      ++.|.....++..++.....-         ..+.-  .++.. .-.+.++.+.++++.||++||++|+...+.++++..+
T Consensus        93 ~~~G~~~~~~l~~~i~~~~~~---------~~~~~--~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~  161 (215)
T TIGR02187        93 RYTGIPAGYEFAALIEDIVRV---------SQGEP--GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA  161 (215)
T ss_pred             EEeecCCHHHHHHHHHHHHHh---------cCCCC--CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence            555543334444433322100         00000  11111 1112233445666779999999999999988887766


Q ss_pred             hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726          192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       192 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~  256 (351)
                      .     +++.+..|+.+..                       .+++++|+|.++||+++. .+|+
T Consensus       162 ~-----~~i~~~~vD~~~~-----------------------~~~~~~~~V~~vPtl~i~-~~~~  197 (215)
T TIGR02187       162 N-----DKILGEMIEANEN-----------------------PDLAEKYGVMSVPKIVIN-KGVE  197 (215)
T ss_pred             c-----CceEEEEEeCCCC-----------------------HHHHHHhCCccCCEEEEe-cCCE
Confidence            3     4566666666653                       688999999999999987 5565

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.9e-18  Score=160.93  Aligned_cols=80  Identities=16%  Similarity=0.352  Sum_probs=60.3

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH  111 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~  111 (351)
                      +...-....+++|.||||||+||++++|.+++.++.++..+..  +....+|++++ ..+..+.+.++||+.+  +|...
T Consensus        35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~--i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~  112 (493)
T KOG0190|consen   35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSP--VKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSA  112 (493)
T ss_pred             HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCC--ceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcc
Confidence            4444457789999999999999999999999999999998744  66677777655 3666677667777765  66653


Q ss_pred             HHHhh
Q 018726          112 KKLRI  116 (351)
Q Consensus       112 ~~l~~  116 (351)
                      ..+.|
T Consensus       113 ~~Y~G  117 (493)
T KOG0190|consen  113 QDYNG  117 (493)
T ss_pred             eeccC
Confidence            34433

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.75  E-value=1.1e-17  Score=143.57  Aligned_cols=119  Identities=18%  Similarity=0.242  Sum_probs=99.1

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEE-EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF  214 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll-~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~  214 (351)
                      .+|+.+|+|++ +..| .+++++++||+++| +||++||+.|..+++.|.+++++|++   .+++|++|++|...  .+|
T Consensus         3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~D~~~~~~~w   78 (202)
T PRK13190          3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSVDSIYSHIAW   78 (202)
T ss_pred             CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence            36899999999 6666 79999999997766 68999999999999999999999987   78999999999643  344


Q ss_pred             Hhhh-ccCC-ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          215 DLNH-SIMP-WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       215 ~~~~-~~~~-~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      .+.+ +..+ ...+|+..|.+..+++.||+.      .+|++||||++|+|++..
T Consensus        79 ~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~  133 (202)
T PRK13190         79 LRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI  133 (202)
T ss_pred             HHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence            4332 2333 256888889899999999984      589999999999999773

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.75  E-value=1.3e-17  Score=140.80  Aligned_cols=120  Identities=18%  Similarity=0.292  Sum_probs=98.3

Q ss_pred             hhhccCCCcEe-c---CCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          139 LLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       139 ~~g~~~pdf~~-~---~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      .+|.++|+|+. .   .+...+++++++||++||+|| +.||+.|..+++.|.+++++|.+   .+++|++||.|...  
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~D~~~~~   79 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH   79 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeCCCHHHH
Confidence            57999999998 3   344566788999999999999 99999999999999999999986   88999999998642  


Q ss_pred             HHHHhhhccCCceeeccCchhhHHHHHHcCc----Cce--eeEEEECCCCceEecc
Q 018726          212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGI--PALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i----~~~--P~~~lid~~G~v~~~~  261 (351)
                      .+|.+......-+.+|+..|++..+++.||+    .++  |++||||++|+|++..
T Consensus        80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~  135 (187)
T PRK10382         80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  135 (187)
T ss_pred             HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence            3343333222235678888889999999998    355  9999999999999884

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.74  E-value=1e-17  Score=137.86  Aligned_cols=112  Identities=18%  Similarity=0.230  Sum_probs=87.1

Q ss_pred             CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHHHhh
Q 018726          146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEFDLN  217 (351)
Q Consensus       146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~  217 (351)
                      +|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|+++       .+.+...++
T Consensus         4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f   80 (153)
T TIGR02540         4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESF   80 (153)
T ss_pred             cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHH
Confidence            6788 899999999999999999999999999999999999999999986   78999999952       345667777


Q ss_pred             hcc-CCceeeccCch-----hhHHHHHHcCc---Cceee----EEEECCCCceEecc
Q 018726          218 HSI-MPWLAIPYEDR-----ARQDLCRIFNI---KGIPA----LVLIGPDGKTISTN  261 (351)
Q Consensus       218 ~~~-~~~~~~~~~~d-----~~~~~~~~~~i---~~~P~----~~lid~~G~v~~~~  261 (351)
                      .+. ++ +.+|...+     ........|.+   .++|+    +||||++|+|+.+.
T Consensus        81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~  136 (153)
T TIGR02540        81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW  136 (153)
T ss_pred             HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence            753 34 44555432     11222223332   35898    99999999999883

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.74  E-value=1.3e-17  Score=129.67  Aligned_cols=111  Identities=29%  Similarity=0.528  Sum_probs=99.8

Q ss_pred             CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHhhhccCCc
Q 018726          146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMPW  223 (351)
Q Consensus       146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~  223 (351)
                      +|.+ +.+|+.+++++++||+++|+||++||++|+..++.+.++.+++.+   +++.+++|++|.. .+.++.+.+.++ 
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~~~~~~~~~~~~~~-   76 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---DGVEVVGVNVDDDDPAAVKAFLKKYG-   76 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---CCeEEEEEECCCCCHHHHHHHHHHcC-
Confidence            4666 889999999999999999999999999999999999999999875   7899999999987 889999998877 


Q ss_pred             eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ..+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~  113 (116)
T cd02966          77 ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR  113 (116)
T ss_pred             CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence            5666666667899999999999999999999999876

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.74  E-value=2.1e-17  Score=142.74  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=102.0

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEF  214 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~  214 (351)
                      ++|+++|+|++ +.+|+...+++++||++ |++||++|||.|..+++.|++++++|.+   .+++|++||+|..  ..+|
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~---~gv~vigIS~D~~~~~~~w   79 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE---LNTELIGLSVDQVFSHIKW   79 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence            68999999999 88898877789999975 6799999999999999999999999987   8899999999974  3456


Q ss_pred             HhhhccC--CceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEec
Q 018726          215 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       215 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~  260 (351)
                      .++++..  .-..+|+..|.+..+++.||+.       ..|++||||++|+|++.
T Consensus        80 ~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             HHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            6666532  1256888888888999999983       68999999999999987

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=4.7e-17  Score=130.93  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=102.9

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|+++|||++ +.+|+.++|++++||+|||+||. .++|-|..++-.+...+.+|.+   .+.+|++||.|. ....++
T Consensus         5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~Ds-~~~~~~   80 (157)
T COG1225           5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISPDS-PKSHKK   80 (157)
T ss_pred             CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeCCC-HHHHHH
Confidence            46899999999 99999999999999999999986 5777899999999999999987   899999999994 556666


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~  260 (351)
                      |.+.++ ++++...|.+..+++.||+.            ..+++||||++|+|++.
T Consensus        81 F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~  135 (157)
T COG1225          81 FAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV  135 (157)
T ss_pred             HHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence            666666 56899999999999999973            35789999999999987

>PRK15000 peroxidase; Provisional

Probab=99.73  E-value=3.8e-17  Score=139.79  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             hhhccCCCcEe-cCC--Ccc---eeeccc-CCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726          139 LLAIEGRDYVL-SRD--HRK---ITVSEL-AGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~--g~~---~~l~~~-~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  210 (351)
                      ++|.++|+|++ +..  |+.   ++++++ +||++||+||+. ||+.|..+++.|++++++|++   .+++|++||+|..
T Consensus         3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~---~g~~vigvS~D~~   79 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK---RGVEVVGVSFDSE   79 (200)
T ss_pred             cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence            47899999999 543  443   445555 799999999995 999999999999999999987   7899999999964


Q ss_pred             H--HHHHhhh-ccCC--ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          211 H--KEFDLNH-SIMP--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       211 ~--~~~~~~~-~~~~--~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      .  ..|.+.. +..+  -+.+|+..|....+++.||+.      ++|++||||++|+|++..
T Consensus        80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~  141 (200)
T PRK15000         80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV  141 (200)
T ss_pred             HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence            3  3444332 2222  257888888889999999997      799999999999999873

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.72  E-value=3.5e-17  Score=132.55  Aligned_cols=115  Identities=21%  Similarity=0.308  Sum_probs=99.3

Q ss_pred             cCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726          143 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI  220 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  220 (351)
                      .+|+|++ +.+|+++++++++||+++|+|| ++||+.|..+++.|.+++++++.   .++.|++|+.| +.....++.+.
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~~i~is~d-~~~~~~~~~~~   76 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK---GGAEVLGVSVD-SPFSHKAWAEK   76 (140)
T ss_pred             CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCC-CHHHHHHHHhc
Confidence            3699999 9999999999999999999999 78999999999999999999975   78999999987 45566677776


Q ss_pred             CCceeeccCchhhHHHHHHcCcCcee---------eEEEECCCCceEecc
Q 018726          221 MPWLAIPYEDRARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN  261 (351)
Q Consensus       221 ~~~~~~~~~~d~~~~~~~~~~i~~~P---------~~~lid~~G~v~~~~  261 (351)
                      ++-..+++..|....+.+.||+...|         +++|||++|+|++++
T Consensus        77 ~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~  126 (140)
T cd02971          77 EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE  126 (140)
T ss_pred             ccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence            63356677778778999999987654         899999999999984

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.72  E-value=1.9e-17  Score=131.06  Aligned_cols=106  Identities=20%  Similarity=0.378  Sum_probs=92.2

Q ss_pred             CCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHhhhccCC
Q 018726          145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMP  222 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~  222 (351)
                      |+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++        .+++|++|.+ .+++.++.+.++
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~   72 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKG   72 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcC
Confidence            78888 8999999999999999999999999999999999999988764        4888888764 677888887766


Q ss_pred             ceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       223 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                       ..+|...|.+..+.+.|++.++|+++|+|++| ++++
T Consensus        73 -~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~  108 (123)
T cd03011          73 -YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV  108 (123)
T ss_pred             -CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence             46676667778899999999999999999999 8776

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.72  E-value=4.2e-17  Score=135.88  Aligned_cols=133  Identities=13%  Similarity=0.081  Sum_probs=94.8

Q ss_pred             hhhccCCCcEe-c----------CCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEE-----
Q 018726          139 LLAIEGRDYVL-S----------RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV-----  202 (351)
Q Consensus       139 ~~g~~~pdf~~-~----------~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~v-----  202 (351)
                      .+|.+.|...+ +          .+.++++.++++||+.||+|||+||++|+.+.|.+.++.+       .++.+     
T Consensus        24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~-------~~~~~~~y~~   96 (184)
T TIGR01626        24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA-------AKFPPVKYQT   96 (184)
T ss_pred             hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH-------cCCCcccccc
Confidence            34666666554 1          2235567788999999999999999999999999999843       45667     


Q ss_pred             -EEEeCCCCHHHHHhhhc--------cCCceeeccCchhhHHHHHHcCcCceeeE-EEECCCCceEeccccceeeccCCc
Q 018726          203 -VLVSTDRDHKEFDLNHS--------IMPWLAIPYEDRARQDLCRIFNIKGIPAL-VLIGPDGKTISTNGKEMISLYGAK  272 (351)
Q Consensus       203 -v~v~~d~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~i~~~P~~-~lid~~G~v~~~~~~~~~~~~g~~  272 (351)
                       ++|+.|++......+.+        .+||.  ++..|....+...|++.++|++ ||||++|+|++++       .|..
T Consensus        97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~--~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~-------~G~l  167 (184)
T TIGR01626        97 TTIINADDAIVGTGMFVKSSAKKGKKENPWS--QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVK-------EGAL  167 (184)
T ss_pred             eEEEECccchhhHHHHHHHHHHHhcccCCcc--eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEE-------eCCC
Confidence             99999876544333432        23332  4666667788999999999988 8999999999984       4532


Q ss_pred             CCCCchhhHHHHHHHHHHh
Q 018726          273 AFPFTESRIAEIETALKKE  291 (351)
Q Consensus       273 ~~p~~~~~~~~l~~~~~~~  291 (351)
                          +++.++++...+++.
T Consensus       168 ----~~ee~e~~~~li~~l  182 (184)
T TIGR01626       168 ----SDSDIQTVISLVNGL  182 (184)
T ss_pred             ----CHHHHHHHHHHHHHH
Confidence                444455555555543

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.71  E-value=8.1e-17  Score=130.79  Aligned_cols=117  Identities=26%  Similarity=0.515  Sum_probs=95.3

Q ss_pred             cCCCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccC-CceEEEEEeCCC---CHHHHHh
Q 018726          143 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTAN-HCFEVVLVSTDR---DHKEFDL  216 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~-~~~~vv~v~~d~---~~~~~~~  216 (351)
                      .+|+|++ +.+|+.+++++++||++||+||++||++ |..+++.|.++++++++ .+ .++++++|+.|.   +.+.+++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~-~~~~~v~~v~vs~d~~~d~~~~~~~   79 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA-DGGDDVQVVFISVDPERDTPEVLKA   79 (142)
T ss_pred             CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH-hhcCceEEEEEEECCCCCCHHHHHH
Confidence            3699999 9999999999999999999999999998 99999999999999985 11 359999999985   3466777


Q ss_pred             hhccCC--ceeeccCchhhHHHHHHcCcCce--------------eeEEEECCCCceEec
Q 018726          217 NHSIMP--WLAIPYEDRARQDLCRIFNIKGI--------------PALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~--~~~~~~~~d~~~~~~~~~~i~~~--------------P~~~lid~~G~v~~~  260 (351)
                      +.+.++  |..+....+....+++.||+...              |+++|||++|+|+..
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  139 (142)
T cd02968          80 YAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY  139 (142)
T ss_pred             HHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence            777654  44444333345789999997654              469999999999976

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.71  E-value=1.3e-16  Score=137.18  Aligned_cols=118  Identities=14%  Similarity=0.189  Sum_probs=95.4

Q ss_pred             hhccCCCcEe-cCCCcceeecccCC-cEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAG-KTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF  214 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~g-k~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~  214 (351)
                      +|+.+|+|++ +..| .+++++++| |++ |++||++|||.|..+++.|++++++|++   .+++|++|++|...  .+|
T Consensus         1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~D~~~~~~~~   76 (203)
T cd03016           1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSVDSVESHIKW   76 (203)
T ss_pred             CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHHH
Confidence            4789999999 6666 689999998 654 5588999999999999999999999987   88999999999643  334


Q ss_pred             HhhhccC--CceeeccCchhhHHHHHHcCcC--------ceeeEEEECCCCceEecc
Q 018726          215 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK--------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       215 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~i~--------~~P~~~lid~~G~v~~~~  261 (351)
                      .+.++..  .-+.+|+..|.+..+++.||+.        ..|++||||++|+|++..
T Consensus        77 ~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~  133 (203)
T cd03016          77 IEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL  133 (203)
T ss_pred             HhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence            4333221  2356788888899999999975        256799999999999873

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.70  E-value=1.6e-16  Score=137.30  Aligned_cols=120  Identities=13%  Similarity=0.200  Sum_probs=98.6

Q ss_pred             HhhhccCCCcEe-cCCCcceee-cccCCcEEEE-EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH--
Q 018726          138 QLLAIEGRDYVL-SRDHRKITV-SELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK--  212 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l-~~~~gk~vll-~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~--  212 (351)
                      ..+|.++|+|++ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|++   .+++|++||+|....  
T Consensus         7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~---~g~~VigvS~Ds~~~h~   82 (215)
T PRK13191          7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK---LNTELIGLSVDSNISHI   82 (215)
T ss_pred             ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHH
Confidence            357999999999 77775 556 5579997665 88999999999999999999999987   889999999997543  


Q ss_pred             HHHhhhccC-C-ceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIM-P-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~~  261 (351)
                      +|.++.+.. + -..+|+..|.+..+++.||+.       ..|++||||++|+|++..
T Consensus        83 aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~  140 (215)
T PRK13191         83 EWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL  140 (215)
T ss_pred             HHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence            565555421 1 256888888889999999973       479999999999999873

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.70  E-value=6.8e-17  Score=132.23  Aligned_cols=114  Identities=22%  Similarity=0.424  Sum_probs=94.7

Q ss_pred             cCCCcEe-cCCCcceeecccC-CcE-EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          143 EGRDYVL-SRDHRKITVSELA-GKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~-gk~-vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      .+|+|++ +.+|+.++++++. ++. +|++||++||++|+.+++.|+++++++.+   .++.|++|+.|... ....+.+
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~---~~v~vv~V~~~~~~-~~~~~~~   76 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA---LGVELVAVGPESPE-KLEAFDK   76 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh---cCeEEEEEeCCCHH-HHHHHHH
Confidence            3789999 8999999999875 455 45555799999999999999999999986   78999999998653 3345555


Q ss_pred             cCCceeeccCchhhHHHHHHcCcC-----------------------------ceeeEEEECCCCceEecc
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIK-----------------------------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~-----------------------------~~P~~~lid~~G~v~~~~  261 (351)
                      ... +.+|+..|++..+.+.||+.                             .+|++||||++|+|++.+
T Consensus        77 ~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~  146 (149)
T cd02970          77 GKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH  146 (149)
T ss_pred             hcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence            444 57888888889999999984                             799999999999999874

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.70  E-value=1.5e-16  Score=140.02  Aligned_cols=122  Identities=17%  Similarity=0.129  Sum_probs=99.8

Q ss_pred             HHhhhccCCCcEe-c-CCC--cceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726          137 EQLLAIEGRDYVL-S-RDH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  210 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~-~~g--~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  210 (351)
                      ..++|+++|+|++ + .+|  +.++++++ +||++||+|| ++||++|..+++.|++++++|++   .+++|++||+|..
T Consensus        67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~Ds~  143 (261)
T PTZ00137         67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSVDSP  143 (261)
T ss_pred             cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence            3478999999998 5 445  45899998 8888888887 89999999999999999999987   8899999999973


Q ss_pred             --HHHHHhh-hccC--CceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEecc
Q 018726          211 --HKEFDLN-HSIM--PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       211 --~~~~~~~-~~~~--~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~~  261 (351)
                        ..+|.+. .+..  .-..+|+..|.+..+++.||+.     ..|++||||++|+|++..
T Consensus       144 ~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~  204 (261)
T PTZ00137        144 FSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA  204 (261)
T ss_pred             HHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence              2445442 2221  2356888888889999999985     589999999999999874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.69  E-value=1e-16  Score=167.50  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=100.6

Q ss_pred             hhccCCCcEe-c--CCCcceee-cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC---CC--C
Q 018726          140 LAIEGRDYVL-S--RDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR--D  210 (351)
Q Consensus       140 ~g~~~pdf~~-~--~~g~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~--~  210 (351)
                      .|.++|+|.. +  .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|++   .++.|++|+.   |.  +
T Consensus       393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~---~~~~vvgV~~~~~D~~~~  469 (1057)
T PLN02919        393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD---QPFTVVGVHSAKFDNEKD  469 (1057)
T ss_pred             cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC---CCeEEEEEeccccccccc
Confidence            4788999987 3  68889988 689999999999999999999999999999999975   6799999974   32  4


Q ss_pred             HHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          211 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+++++++..++ +.+|...|....+.+.|++.++|+++|||++|+++.+
T Consensus       470 ~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~  518 (1057)
T PLN02919        470 LEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ  518 (1057)
T ss_pred             HHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence            567777877666 4566666777889999999999999999999999988

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.69  E-value=2.9e-16  Score=134.78  Aligned_cols=120  Identities=18%  Similarity=0.289  Sum_probs=98.8

Q ss_pred             hhhccCCCcEe-c----CCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          139 LLAIEGRDYVL-S----RDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       139 ~~g~~~pdf~~-~----~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      .+|+++|+|++ +    .+++++++++++||+++|+||+ .||+.|..+++.|.+++++|.+   .+++|++||+|....
T Consensus         7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~d~~~~   83 (199)
T PTZ00253          7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSMDSEYA   83 (199)
T ss_pred             ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHH
Confidence            57999999996 3    4568899999999999999996 7899999999999999999987   899999999997543


Q ss_pred             --HHHhhhc---cCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          213 --EFDLNHS---IMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 --~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                        .+.....   ..+-+.+|+..|.+..+++.||+.      .+|++||||++|+|++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~  143 (199)
T PTZ00253         84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT  143 (199)
T ss_pred             HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence              2221111   122367899999999999999985      479999999999999863

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.69  E-value=1.1e-16  Score=132.47  Aligned_cols=97  Identities=18%  Similarity=0.267  Sum_probs=79.3

Q ss_pred             hccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726          141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI  220 (351)
Q Consensus       141 g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  220 (351)
                      ..+.|+|.+ .+|+.+++++++    +|+||++||++|++++|.|++++++++      +.|++|++|...+        
T Consensus        52 ~~~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~--------  112 (181)
T PRK13728         52 KPAPRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGD--------  112 (181)
T ss_pred             CCCCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCC--------
Confidence            345678886 589999999987    778999999999999999999999873      7899999986521        


Q ss_pred             CCceeeccCch-hhHHHHHHcCc--CceeeEEEECCCCceEe
Q 018726          221 MPWLAIPYEDR-ARQDLCRIFNI--KGIPALVLIGPDGKTIS  259 (351)
Q Consensus       221 ~~~~~~~~~~d-~~~~~~~~~~i--~~~P~~~lid~~G~v~~  259 (351)
                         ..+|...+ ....+.+.|++  .++|++||||++|+++.
T Consensus       113 ---~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728        113 ---TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             ---CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence               35666553 45667888995  69999999999999975

>PRK13189 peroxiredoxin; Provisional

Probab=99.68  E-value=4.7e-16  Score=135.15  Aligned_cols=119  Identities=15%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             hhhccCCCcEe-cCCCcceeecc-cCCcEEE-EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSE-LAGKTIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  213 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~-~~gk~vl-l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  213 (351)
                      .+|..+|+|++ +..| .+++++ ++||+++ ++||++||+.|..+++.|++++++|++   .+++|++||+|...  .+
T Consensus        10 ~vG~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~D~~~~h~a   85 (222)
T PRK13189         10 LIGDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSIDQVFSHIK   85 (222)
T ss_pred             cCCCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHH
Confidence            57999999999 6776 477776 4999555 577999999999999999999999987   88999999999754  34


Q ss_pred             HHhhhcc-CC-ceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEecc
Q 018726          214 FDLNHSI-MP-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~~  261 (351)
                      |.+.+.. .+ -..+|+..|.+..+++.||+.       .+|++||||++|+|++..
T Consensus        86 w~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~  142 (222)
T PRK13189         86 WVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL  142 (222)
T ss_pred             HHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence            4443322 22 256788888889999999975       579999999999998773

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.66  E-value=9e-16  Score=124.22  Aligned_cols=75  Identities=19%  Similarity=0.431  Sum_probs=66.2

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .+||+++|+||++||++|+.+.|.|.++++++.    ..+.|+.|++|.+.                     ...+.++|
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~---------------------~~~~~~~~   72 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK---------------------WLPEIDRY   72 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc---------------------cHHHHHHc
Confidence            468999999999999999999999999999986    45789999888642                     24678899


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|.++|+++|+|++|+++.+
T Consensus        73 ~V~~iPt~v~~~~~G~~v~~   92 (142)
T cd02950          73 RVDGIPHFVFLDREGNEEGQ   92 (142)
T ss_pred             CCCCCCEEEEECCCCCEEEE
Confidence            99999999999999999987

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2.5e-15  Score=141.91  Aligned_cols=181  Identities=17%  Similarity=0.277  Sum_probs=117.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+++++|.||+|||++|+.+.|.+.+++..+++.     +.+.++|++.. .+++.+.+.++|++.+  .+.....+.+.
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~  120 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGP  120 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCc
Confidence            6789999999999999999999999999999874     66677777654 4777777777788877  33112222222


Q ss_pred             hhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceeec-ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhccc
Q 018726          118 KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA  196 (351)
Q Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~  196 (351)
                      .....+.........     ..+....+.-...+....+..- ......++|.|+++||++|+.+.|.+.++...+..  
T Consensus       121 ~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~--  193 (383)
T KOG0191|consen  121 RNAESLAEFLIKELE-----PSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS--  193 (383)
T ss_pred             ccHHHHHHHHHHhhc-----cccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc--
Confidence            222222222111111     1111111110001111111111 11245789999999999999999999999998862  


Q ss_pred             CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726          197 NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       197 ~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~  256 (351)
                      ...+.+..++.+.                       ...++..+++.++|++.++-++..
T Consensus       194 ~~~v~~~~~d~~~-----------------------~~~~~~~~~v~~~Pt~~~f~~~~~  230 (383)
T KOG0191|consen  194 KENVELGKIDATV-----------------------HKSLASRLEVRGYPTLKLFPPGEE  230 (383)
T ss_pred             CcceEEEeeccch-----------------------HHHHhhhhcccCCceEEEecCCCc
Confidence            3667777776662                       478899999999999999954444

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.64  E-value=3.2e-15  Score=145.00  Aligned_cols=65  Identities=18%  Similarity=0.464  Sum_probs=51.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~  106 (351)
                      .++++++|.|||+||++|+++.|.+.++++.+++.+.  .+.++.+|++.. .+++.++...+|++.+
T Consensus        16 ~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130        16 KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGP--PIKLAKVDATEEKDLAQKYGVSGYPTLKI   81 (462)
T ss_pred             hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCC--ceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence            3688999999999999999999999999999987653  355566665543 4677777777787766

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.59  E-value=1.1e-14  Score=122.19  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             cCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHH
Q 018726          143 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEF  214 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~  214 (351)
                      ..++|++ +.+|+.+++++++||++||+|||+||++|. +.+.|++++++|++   .++.|++|+++       .+.+++
T Consensus         4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei   79 (183)
T PRK10606          4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEI   79 (183)
T ss_pred             CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHH
Confidence            4678999 999999999999999999999999999996 68999999999986   78999999985       345677


Q ss_pred             Hhhhc
Q 018726          215 DLNHS  219 (351)
Q Consensus       215 ~~~~~  219 (351)
                      +++.+
T Consensus        80 ~~f~~   84 (183)
T PRK10606         80 KTYCR   84 (183)
T ss_pred             HHHHH
Confidence            77775

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.58  E-value=1.7e-14  Score=110.39  Aligned_cols=75  Identities=20%  Similarity=0.383  Sum_probs=63.3

Q ss_pred             ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       160 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      +.+||++||+|||+||++|+.+.|.|++++++++     ++.++.|+.|.+.                    ....++++
T Consensus        12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~--------------------~~~~l~~~   66 (103)
T cd02985          12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----DVVFLLVNGDEND--------------------STMELCRR   66 (103)
T ss_pred             HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CCEEEEEECCCCh--------------------HHHHHHHH
Confidence            3468999999999999999999999999999883     4678888877542                    02478999


Q ss_pred             cCcCceeeEEEECCCCceEec
Q 018726          240 FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~v~~~  260 (351)
                      |+|.++||++++ ++|+++.+
T Consensus        67 ~~V~~~Pt~~~~-~~G~~v~~   86 (103)
T cd02985          67 EKIIEVPHFLFY-KDGEKIHE   86 (103)
T ss_pred             cCCCcCCEEEEE-eCCeEEEE
Confidence            999999998888 89998877

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.58  E-value=1.1e-14  Score=111.74  Aligned_cols=72  Identities=18%  Similarity=0.438  Sum_probs=64.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .++++||.|||+||+||+.+.|.|.+++++++    ..+.++.|++|..                       ..++++|+
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~----~~v~f~kVDvD~~-----------------------~~la~~~~   65 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS----NFAVIYLVDIDEV-----------------------PDFNKMYE   65 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence            46799999999999999999999999999986    4578888888874                       68999999


Q ss_pred             cCceeeEEEECCCCceEecc
Q 018726          242 IKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~~  261 (351)
                      |.++||++++ ++|+++.+.
T Consensus        66 V~~iPTf~~f-k~G~~v~~~   84 (114)
T cd02954          66 LYDPPTVMFF-FRNKHMKID   84 (114)
T ss_pred             CCCCCEEEEE-ECCEEEEEE
Confidence            9999999999 899998874

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=6e-15  Score=116.49  Aligned_cols=77  Identities=25%  Similarity=0.551  Sum_probs=68.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++|+|+|||+||+||+.+.|.|+++..+|.    ..+.+..|++|..                       .+++..|+
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~----g~~k~~kvdtD~~-----------------------~ela~~Y~  112 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYA----GKFKLYKVDTDEH-----------------------PELAEDYE  112 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhc----CeEEEEEEccccc-----------------------cchHhhcc
Confidence            36899999999999999999999999999996    7899999999975                       69999999


Q ss_pred             cCceeeEEEECCCCceEeccccceeeccCCcC
Q 018726          242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA  273 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~  273 (351)
                      |.++||++++ ++|+.+.+       +.|+..
T Consensus       113 I~avPtvlvf-knGe~~d~-------~vG~~~  136 (150)
T KOG0910|consen  113 ISAVPTVLVF-KNGEKVDR-------FVGAVP  136 (150)
T ss_pred             eeeeeEEEEE-ECCEEeee-------ecccCC
Confidence            9999999999 78887755       567654

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.56  E-value=1.4e-14  Score=116.73  Aligned_cols=73  Identities=29%  Similarity=0.632  Sum_probs=62.7

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhc-----CCcEEEEEEEecCChhhHHHHHhcCC--ceeeecC
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-----GTELEVIFISFDHDENGFEEHFKCMP--WLAVPFD  107 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~-----~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~~~~  107 (351)
                      +++++++||+|+|+|||+||++|++++|.|.+++++++++     ...+++++|+.|.+.+.+.++++.++  |+.+++.
T Consensus        18 ~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~   97 (146)
T cd03008          18 EIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE   97 (146)
T ss_pred             ccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence            4667899999999999999999999999999999988764     23499999999988877888888887  7777773

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.56  E-value=1.3e-14  Score=116.19  Aligned_cols=82  Identities=54%  Similarity=1.148  Sum_probs=74.1

Q ss_pred             ceeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceee
Q 018726           26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV  104 (351)
Q Consensus        26 ~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (351)
                      ++|.+.+|+ +++++++||+|+|+||++||++|+.++|.+.++++++.+.+..+++++|++|.+.+.+.++++..+|..+
T Consensus         1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~   80 (131)
T cd03009           1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV   80 (131)
T ss_pred             CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence            478899999 9999999999999999999999999999999999999876445899999999888888888888888888


Q ss_pred             ecC
Q 018726          105 PFD  107 (351)
Q Consensus       105 ~~~  107 (351)
                      ++.
T Consensus        81 ~~~   83 (131)
T cd03009          81 PFS   83 (131)
T ss_pred             ccC
Confidence            773

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.55  E-value=1.4e-14  Score=115.39  Aligned_cols=98  Identities=37%  Similarity=0.730  Sum_probs=84.9

Q ss_pred             ceeeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh--cCCc
Q 018726           26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK--CMPW  101 (351)
Q Consensus        26 ~~l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~--~~~~  101 (351)
                      ..|...+|. +..+ .++||+|.++|.|.||+||+.|.|.+.++|+++++++..++|+|||-|.+.+.+.+++.  ..+|
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W   94 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW   94 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence            668888888 6666 68999999999999999999999999999999999988999999999999999999987  5789


Q ss_pred             eeeecChHHHHHHhhhhhhhHH
Q 018726          102 LAVPFDETLHKKLRIRKRREEL  123 (351)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~l  123 (351)
                      +.+||.....+++...+.+..+
T Consensus        95 ~~iPf~d~~~~~l~~ky~v~~i  116 (157)
T KOG2501|consen   95 LAIPFGDDLIQKLSEKYEVKGI  116 (157)
T ss_pred             EEecCCCHHHHHHHHhcccCcC
Confidence            9999977666666655554433

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.54  E-value=1.8e-14  Score=117.38  Aligned_cols=86  Identities=19%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726          153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA  232 (351)
Q Consensus       153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~  232 (351)
                      |+.++++    ++.+|+|||+||++|++++|.|++++++++      +.|++|++|....      .     .+|...+.
T Consensus        44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~------~-----~fp~~~~~  102 (153)
T TIGR02738        44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGL------T-----GFPDPLPA  102 (153)
T ss_pred             chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcc------c-----ccccccCC
Confidence            4444444    456999999999999999999999998863      5789999886431      1     12222111


Q ss_pred             -hHHHHHHc---CcCceeeEEEECCCCceEe
Q 018726          233 -RQDLCRIF---NIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       233 -~~~~~~~~---~i~~~P~~~lid~~G~v~~  259 (351)
                       ...+...|   ++.++|++|+||++|+++.
T Consensus       103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~  133 (153)
T TIGR02738       103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY  133 (153)
T ss_pred             chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence             12233455   8899999999999988654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PHA02278 thioredoxin-like protein

Probab=99.53  E-value=5e-14  Score=107.13  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=62.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+|||+||+||+.+.|.+.++.+++.    ..+.++.|++|.+.                  .+ ...++++|+
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~----~~~~~~~vdvd~~~------------------~d-~~~l~~~~~   69 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD----IKKPILTLNLDAED------------------VD-REKAVKLFD   69 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc----CCceEEEEECCccc------------------cc-cHHHHHHCC
Confidence            57899999999999999999999999988754    44678888888641                  00 257899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        70 I~~iPT~i~f-k~G~~v~~   87 (103)
T PHA02278         70 IMSTPVLIGY-KDGQLVKK   87 (103)
T ss_pred             CccccEEEEE-ECCEEEEE
Confidence            9999999999 88998877

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.53  E-value=9.8e-14  Score=105.96  Aligned_cols=71  Identities=18%  Similarity=0.371  Sum_probs=61.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+|||+||++|+.+.|.|.+++++++.   ..+.++.++.| .                       ..++++|+
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d-~-----------------------~~~~~~~~   68 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD---DLLHFATAEAD-T-----------------------IDTLKRYR   68 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC---CcEEEEEEeCC-C-----------------------HHHHHHcC
Confidence            478999999999999999999999999998863   45778888877 3                       46789999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~g~~~~~   86 (102)
T cd02948          69 GKCEPTFLFY-KNGELVAV   86 (102)
T ss_pred             CCcCcEEEEE-ECCEEEEE
Confidence            9999999888 78988877

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.5e-13  Score=113.02  Aligned_cols=120  Identities=22%  Similarity=0.337  Sum_probs=101.6

Q ss_pred             HhhhccCCCcEe-cC-CCc---ceeecccCCcEEEEEEecCCCh-hhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018726          138 QLLAIEGRDYVL-SR-DHR---KITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-  210 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~-~g~---~~~l~~~~gk~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-  210 (351)
                      .++|.++|+|+. .. .|.   +++++++.||+++|+||...-. .|..++..+++++++|++   .+++|++||+|.. 
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~---~g~eVigvS~Ds~f   79 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK---RGVEVIGVSTDSVF   79 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH---cCCEEEEEecCcHH
Confidence            478999999999 44 553   8999999999999999976544 499999999999999998   9999999999974 


Q ss_pred             -HHHHHhhhccCC---ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          211 -HKEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 -~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                       ..+|.+......   -..+|...|...++++.||+.      ++..+|||||+|+|++.
T Consensus        80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~  139 (194)
T COG0450          80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI  139 (194)
T ss_pred             HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence             467777754333   378999999999999999974      57889999999999877

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.52  E-value=7.3e-14  Score=106.12  Aligned_cols=69  Identities=16%  Similarity=0.338  Sum_probs=57.6

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ++++||+++|.|||+||++|+.+.|.|++++++++     ++.++.|+.+..                      ...+++
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----~~~~~~vd~~~~----------------------~~~l~~   66 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----QIRHLAIEESSI----------------------KPSLLS   66 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----cCceEEEECCCC----------------------CHHHHH
Confidence            45689999999999999999999999999999885     256666655421                      368899


Q ss_pred             HcCcCceeeEEEECCCC
Q 018726          239 IFNIKGIPALVLIGPDG  255 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G  255 (351)
                      +|+|.++||+++++ +|
T Consensus        67 ~~~V~~~PT~~lf~-~g   82 (100)
T cd02999          67 RYGVVGFPTILLFN-ST   82 (100)
T ss_pred             hcCCeecCEEEEEc-CC
Confidence            99999999999995 55

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.52  E-value=1.1e-13  Score=107.37  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=64.4

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      ..|++++|+||++||++|+.+.|.+.++.++++.   .++.++.|++|..                       ..++++|
T Consensus        22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~l~~~~   75 (111)
T cd02963          22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LGVGIATVNAGHE-----------------------RRLARKL   75 (111)
T ss_pred             cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cCceEEEEecccc-----------------------HHHHHHc
Confidence            3689999999999999999999999999999974   4688888888754                       5789999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|.++||++++ ++|+++.+
T Consensus        76 ~V~~~Pt~~i~-~~g~~~~~   94 (111)
T cd02963          76 GAHSVPAIVGI-INGQVTFY   94 (111)
T ss_pred             CCccCCEEEEE-ECCEEEEE
Confidence            99999999999 68988766

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.50  E-value=2.3e-13  Score=102.65  Aligned_cols=71  Identities=18%  Similarity=0.368  Sum_probs=62.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +|++++|+||++||++|+.+.|.++++++.++    ..+.++.|+++..                       ..++++|+
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~l~~~~~   63 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQFVLAKVNCDAQ-----------------------PQIAQQFG   63 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----CcEEEEEEeccCC-----------------------HHHHHHcC
Confidence            47899999999999999999999999999986    4577888887764                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|++++++ +|+++.+
T Consensus        64 i~~~Pt~~~~~-~g~~~~~   81 (96)
T cd02956          64 VQALPTVYLFA-AGQPVDG   81 (96)
T ss_pred             CCCCCEEEEEe-CCEEeee
Confidence            99999999995 8988765

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.49  E-value=1.2e-13  Score=110.71  Aligned_cols=80  Identities=53%  Similarity=1.113  Sum_probs=68.7

Q ss_pred             eeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC-Cceeee
Q 018726           27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-PWLAVP  105 (351)
Q Consensus        27 ~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~-~~~~~~  105 (351)
                      +|+|.+..+++++++||+++|+||++||++|+.++|.++++++++++.+..+++++|++|.+.+.+.++++.+ +|+.++
T Consensus         2 ~~~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           2 FLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            5677773399999999999999999999999999999999999998753348999999998877788888877 577777


Q ss_pred             c
Q 018726          106 F  106 (351)
Q Consensus       106 ~  106 (351)
                      +
T Consensus        82 ~   82 (132)
T cd02964          82 F   82 (132)
T ss_pred             c
Confidence            6

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.5e-13  Score=103.38  Aligned_cols=74  Identities=23%  Similarity=0.569  Sum_probs=64.4

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +|.++|+|+|+||+||+.+.|.+.+++.+|+    + +.++.|++|.                       ...+++.|++
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~-v~Flkvdvde-----------------------~~~~~~~~~V   72 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----D-VVFLKVDVDE-----------------------LEEVAKEFNV   72 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCC----C-CEEEEEeccc-----------------------CHhHHHhcCc
Confidence            6999999999999999999999999999996    3 7888888886                       2789999999


Q ss_pred             CceeeEEEECCCCceEeccccceeeccCCc
Q 018726          243 KGIPALVLIGPDGKTISTNGKEMISLYGAK  272 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~~~~~~~~~~g~~  272 (351)
                      .++||++++ ++|+.+.+       ..|+.
T Consensus        73 ~~~PTf~f~-k~g~~~~~-------~vGa~   94 (106)
T KOG0907|consen   73 KAMPTFVFY-KGGEEVDE-------VVGAN   94 (106)
T ss_pred             eEeeEEEEE-ECCEEEEE-------EecCC
Confidence            999999999 77766655       67765

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.46  E-value=3e-13  Score=111.24  Aligned_cols=117  Identities=16%  Similarity=0.209  Sum_probs=94.4

Q ss_pred             hhccCCCcEe-cCC---Ccceeecc-cCCcEEEEEE-ecCCChhhHHh-HHHHHHHHHHhhcccCCce-EEEEEeCCCCH
Q 018726          140 LAIEGRDYVL-SRD---HRKITVSE-LAGKTIGLYF-GAHWCPPCRSF-TSQLIEVYNELKTTANHCF-EVVLVSTDRDH  211 (351)
Q Consensus       140 ~g~~~pdf~~-~~~---g~~~~l~~-~~gk~vll~F-~a~~C~~C~~~-~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~  211 (351)
                      +|+++|+|++ +.+   |+.+++++ ++||++||+| .+.|||.|..+ ++.|.+.+++|.+   .++ .|++||.|.. 
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~---~g~~~V~~iS~D~~-   76 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA---KGVDEVICVSVNDP-   76 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH---CCCCEEEEEECCCH-
Confidence            4789999999 664   89999999 5887555554 67899999999 9999999999986   787 6999999954 


Q ss_pred             HHHHhhhccCCc-eeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      ...+++.+..+. ..+|+..|.+..+++.||+.           ..+.++||| +|+|++..
T Consensus        77 ~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~  137 (155)
T cd03013          77 FVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF  137 (155)
T ss_pred             HHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence            345555555554 46888999999999999972           247889999 79999873

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.46  E-value=3e-13  Score=103.12  Aligned_cols=81  Identities=20%  Similarity=0.367  Sum_probs=66.6

Q ss_pred             CCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCch
Q 018726          152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR  231 (351)
Q Consensus       152 ~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d  231 (351)
                      +++.+......+++++|.||++||++|+.+.|.+.+++++++    ..+.+..|++|..                     
T Consensus         7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~~~~~~vd~~~~---------------------   61 (101)
T cd03003           7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GVIRIGAVNCGDD---------------------   61 (101)
T ss_pred             CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----CceEEEEEeCCcc---------------------
Confidence            334444333456899999999999999999999999999987    4588888988864                     


Q ss_pred             hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          232 ARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       232 ~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                        ..++++|+|.++||++++ ++|+.+.+
T Consensus        62 --~~~~~~~~v~~~Pt~~~~-~~g~~~~~   87 (101)
T cd03003          62 --RMLCRSQGVNSYPSLYVF-PSGMNPEK   87 (101)
T ss_pred             --HHHHHHcCCCccCEEEEE-cCCCCccc
Confidence              678999999999999999 78876544

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.45  E-value=3.9e-13  Score=106.67  Aligned_cols=85  Identities=25%  Similarity=0.491  Sum_probs=64.9

Q ss_pred             CC-cEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          162 AG-KTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       162 ~g-k~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      .| |+++|+||++||++|+.+.+.+.   .+.+.++    .++.++.|++|.+.... .         +.........++
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~   77 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKEVT-D---------FDGEALSEKELA   77 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence            57 89999999999999999999885   5555554    56888888887653211 1         111112357899


Q ss_pred             HHcCcCceeeEEEECCC-CceEec
Q 018726          238 RIFNIKGIPALVLIGPD-GKTIST  260 (351)
Q Consensus       238 ~~~~i~~~P~~~lid~~-G~v~~~  260 (351)
                      ++|++.++||++++|++ |+++.+
T Consensus        78 ~~~~v~~~Pt~~~~~~~gg~~~~~  101 (125)
T cd02951          78 RKYRVRFTPTVIFLDPEGGKEIAR  101 (125)
T ss_pred             HHcCCccccEEEEEcCCCCceeEE
Confidence            99999999999999999 898877

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PHA02278 thioredoxin-like protein

Probab=99.44  E-value=9.2e-14  Score=105.68  Aligned_cols=81  Identities=14%  Similarity=0.230  Sum_probs=62.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMPWLAVPF--DETLHKKLR  115 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~~~~~~~--~~~~~~~l~  115 (351)
                      ++++++|+|||+||+||+.+.|.+.++++++...   ..++.|++|.++   ..+.+.+++..+|++.+  +|+...++.
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~   89 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYE   89 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEe
Confidence            6899999999999999999999999999875443   467888888653   45777788888888887  777776666


Q ss_pred             hhhhhhHHh
Q 018726          116 IRKRREELK  124 (351)
Q Consensus       116 ~~~~~~~l~  124 (351)
                      |....+.+.
T Consensus        90 G~~~~~~l~   98 (103)
T PHA02278         90 DQVTPMQLQ   98 (103)
T ss_pred             CCCCHHHHH
Confidence            644444443

>PRK09381 trxA thioredoxin; Provisional

Probab=99.44  E-value=1.2e-12  Score=101.13  Aligned_cols=71  Identities=30%  Similarity=0.577  Sum_probs=63.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+||++||++|+.+.|.+++++++++    +++.++.|+++..                       ..++++|+
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   72 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG   72 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEECCCC-----------------------hhHHHhCC
Confidence            36899999999999999999999999999987    4688899988864                       56788999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        73 v~~~Pt~~~~-~~G~~~~~   90 (109)
T PRK09381         73 IRGIPTLLLF-KNGEVAAT   90 (109)
T ss_pred             CCcCCEEEEE-eCCeEEEE
Confidence            9999999999 79998876

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.43  E-value=1.2e-12  Score=100.34  Aligned_cols=76  Identities=22%  Similarity=0.388  Sum_probs=62.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      +||+++|+||++||++|+.+.+.+   .++.+.++    +++.++.|+++.+.                   +....+++
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~-------------------~~~~~~~~   66 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADWTKND-------------------PEITALLK   66 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEecCCCC-------------------HHHHHHHH
Confidence            579999999999999999999887   57777775    46888888876431                   11358889


Q ss_pred             HcCcCceeeEEEECC-CCceEec
Q 018726          239 IFNIKGIPALVLIGP-DGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~-~G~v~~~  260 (351)
                      +|++.++||++++++ +|+++.+
T Consensus        67 ~~~i~~~Pti~~~~~~~g~~~~~   89 (104)
T cd02953          67 RFGVFGPPTYLFYGPGGEPEPLR   89 (104)
T ss_pred             HcCCCCCCEEEEECCCCCCCCcc
Confidence            999999999999988 8988776

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.43  E-value=9e-13  Score=99.21  Aligned_cols=73  Identities=38%  Similarity=0.868  Sum_probs=60.3

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--CceeeecChHHHHHHh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PWLAVPFDETLHKKLR  115 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~  115 (351)
                      ||+++|+|||+||++|+.+.|.+.++++++++ +.++++++|++|.+.+.+.++++..  +|+.++++......+.
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   75 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL   75 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence            89999999999999999999999999999994 4459999999998888899998877  8888888544333433

...

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.43  E-value=3e-13  Score=105.65  Aligned_cols=78  Identities=21%  Similarity=0.462  Sum_probs=59.5

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      ..+..++|+++|+|||+||++|+.+.|.+.+..+...    ....++.|.+|.+.                      ...
T Consensus        13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~----~~~~fv~v~vd~~~----------------------~~~   66 (117)
T cd02959          13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE----LSHNFVMVNLEDDE----------------------EPK   66 (117)
T ss_pred             HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh----hcCcEEEEEecCCC----------------------Cch
Confidence            3344568999999999999999999999988766543    22346666776542                      234


Q ss_pred             HHHcCcCc--eeeEEEECCCCceEec
Q 018726          237 CRIFNIKG--IPALVLIGPDGKTIST  260 (351)
Q Consensus       237 ~~~~~i~~--~P~~~lid~~G~v~~~  260 (351)
                      .+.|++.+  +||++++|++|+++.+
T Consensus        67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          67 DEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             hhhcccCCCccceEEEECCCCCCchh
Confidence            45788876  9999999999999876

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=9.8e-13  Score=115.03  Aligned_cols=71  Identities=25%  Similarity=0.515  Sum_probs=64.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +.++|||+||++||++|+...|.|.++..+|+    ..+.+..|++|.+                       ..++.+||
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~----G~f~LakvN~D~~-----------------------p~vAaqfg   94 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK----GKFKLAKVNCDAE-----------------------PMVAAQFG   94 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC----CceEEEEecCCcc-----------------------hhHHHHhC
Confidence            45799999999999999999999999999998    7899999999975                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |+++||+|++ ++|+.+.-
T Consensus        95 iqsIPtV~af-~dGqpVdg  112 (304)
T COG3118          95 VQSIPTVYAF-KDGQPVDG  112 (304)
T ss_pred             cCcCCeEEEe-eCCcCccc
Confidence            9999999999 88887755

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.40  E-value=3.7e-13  Score=102.23  Aligned_cols=78  Identities=10%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      +++||+++|.|||+||++|++++|.++++++++++    +.++.|+.+.+...+.+.++...+||+.+  +| ...++.|
T Consensus        15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G   89 (100)
T cd02999          15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNG   89 (100)
T ss_pred             hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecC
Confidence            46899999999999999999999999999999853    34444433322345777778778888876  44 4445555


Q ss_pred             hhhhh
Q 018726          117 RKRRE  121 (351)
Q Consensus       117 ~~~~~  121 (351)
                      ....+
T Consensus        90 ~~~~~   94 (100)
T cd02999          90 TRTLD   94 (100)
T ss_pred             CCCHH
Confidence            43333

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.40  E-value=1.7e-12  Score=100.42  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=59.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH-HHc
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC-RIF  240 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~  240 (351)
                      .++++||.|||+||++|+.+.|.+.+++++++    +.+.++.|++|..                       ..++ ++|
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~v~~~~Vd~d~~-----------------------~~l~~~~~   80 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQVLFVAINCWWP-----------------------QGKCRKQK   80 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------hHHHHHhc
Confidence            56899999999999999999999999999996    4588888888864                       4666 689


Q ss_pred             CcCceeeEEEECCCCceE
Q 018726          241 NIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~  258 (351)
                      +|.++||+.++ ++|+..
T Consensus        81 ~I~~~PTl~lf-~~g~~~   97 (113)
T cd03006          81 HFFYFPVIHLY-YRSRGP   97 (113)
T ss_pred             CCcccCEEEEE-ECCccc
Confidence            99999999999 777643

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.40  E-value=6.5e-13  Score=102.74  Aligned_cols=80  Identities=8%  Similarity=0.073  Sum_probs=55.6

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++++++|.|||+||++|+.++|.++++++.+++.   +.++.|++|.+.....+.+++..+|++.+  +|+...++.|.
T Consensus        27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~  103 (113)
T cd03006          27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGP  103 (113)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCC
Confidence            47899999999999999999999999999999754   44555554443333434566566667665  66655555554


Q ss_pred             hhhhH
Q 018726          118 KRREE  122 (351)
Q Consensus       118 ~~~~~  122 (351)
                      .+.+.
T Consensus       104 ~~~~~  108 (113)
T cd03006         104 MRAPY  108 (113)
T ss_pred             CCHHH
Confidence            44333

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.40  E-value=2.1e-12  Score=104.97  Aligned_cols=74  Identities=18%  Similarity=0.378  Sum_probs=64.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.++++++++..   .++.++.|++|..                       .+++++|+
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~-----------------------~~la~~~~   99 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN---NNLKFGKIDIGRF-----------------------PNVAEKFR   99 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence            467999999999999999999999999999864   5699999999875                       57888888


Q ss_pred             cCc------eeeEEEECCCCceEeccc
Q 018726          242 IKG------IPALVLIGPDGKTISTNG  262 (351)
Q Consensus       242 i~~------~P~~~lid~~G~v~~~~~  262 (351)
                      |.+      +||++++ ++|+.+.+..
T Consensus       100 V~~~~~v~~~PT~ilf-~~Gk~v~r~~  125 (152)
T cd02962         100 VSTSPLSKQLPTIILF-QGGKEVARRP  125 (152)
T ss_pred             ceecCCcCCCCEEEEE-ECCEEEEEEe
Confidence            877      9999999 7999887743

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK10996 thioredoxin 2; Provisional

Probab=99.39  E-value=4e-12  Score=102.60  Aligned_cols=71  Identities=27%  Similarity=0.579  Sum_probs=62.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.|.++++++.    .++.++.|+++..                       ..++++|+
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~  103 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GKVRFVKVNTEAE-----------------------RELSARFR  103 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEeCCCC-----------------------HHHHHhcC
Confidence            47999999999999999999999999999876    5678888877653                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++|+++++ ++|+++.+
T Consensus       104 V~~~Ptlii~-~~G~~v~~  121 (139)
T PRK10996        104 IRSIPTIMIF-KNGQVVDM  121 (139)
T ss_pred             CCccCEEEEE-ECCEEEEE
Confidence            9999999998 68998876

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.1e-13  Score=106.83  Aligned_cols=83  Identities=20%  Similarity=0.412  Sum_probs=64.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH-HhcCCceeee-c-ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH-FKCMPWLAVP-F-DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~l~~~  117 (351)
                      .+.||+|+|||+||+||+.+.|.++++..+|.++   +++..|+.|.+-+...+| ++..|  ++. | +|+...++.|.
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~ela~~Y~I~avP--tvlvfknGe~~d~~vG~  134 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPELAEDYEISAVP--TVLVFKNGEKVDRFVGA  134 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccchHhhcceeeee--EEEEEECCEEeeeeccc
Confidence            7899999999999999999999999999999776   777777777666545444 55555  444 3 88888888886


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                      ...+.+...++
T Consensus       135 ~~~~~l~~~i~  145 (150)
T KOG0910|consen  135 VPKEQLRSLIK  145 (150)
T ss_pred             CCHHHHHHHHH
Confidence            66666655554

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.38  E-value=3.3e-12  Score=97.29  Aligned_cols=68  Identities=22%  Similarity=0.416  Sum_probs=58.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +|+ ++|.|||+||++|+.+.|.++++++.++.   .++.+..|+++..                       ..++++|+
T Consensus        16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~-----------------------~~~~~~~~   68 (101)
T cd02994          16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---LGINVAKVDVTQE-----------------------PGLSGRFF   68 (101)
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---CCeEEEEEEccCC-----------------------HhHHHHcC
Confidence            455 68999999999999999999999987753   5688888887754                       57889999


Q ss_pred             cCceeeEEEECCCCce
Q 018726          242 IKGIPALVLIGPDGKT  257 (351)
Q Consensus       242 i~~~P~~~lid~~G~v  257 (351)
                      |.++||++++ ++|++
T Consensus        69 i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          69 VTALPTIYHA-KDGVF   83 (101)
T ss_pred             CcccCEEEEe-CCCCE
Confidence            9999999998 88875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.38  E-value=2.7e-12  Score=99.65  Aligned_cols=95  Identities=22%  Similarity=0.463  Sum_probs=65.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +||+++++||++||++|+.+.+.+.+..+--.. ...++.++.++++.+...........+.   +.......++.+.||
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~   79 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARY-LKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG   79 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCE-EHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence            589999999999999999999988865442221 1256889999988765443333332221   222223568999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++|++|+++.+
T Consensus        80 v~gtPt~~~~d~~G~~v~~   98 (112)
T PF13098_consen   80 VNGTPTIVFLDKDGKIVYR   98 (112)
T ss_dssp             --SSSEEEECTTTSCEEEE
T ss_pred             CCccCEEEEEcCCCCEEEE
Confidence            9999999999999998876

...

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.37  E-value=4.3e-13  Score=102.90  Aligned_cols=75  Identities=13%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+++++|+|||+||+||+.|.|.+.++++++++.   +.++.|++|... .+.+.+++...|++.+  +|+...+..|..
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-~la~~~~V~~iPTf~~fk~G~~v~~~~G~~   88 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-DFNKMYELYDPPTVMFFFRNKHMKIDLGTG   88 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEEEEEcCCC
Confidence            5789999999999999999999999999998755   455666666544 4666666666677766  887766666543


Q ss_pred             h
Q 018726          119 R  119 (351)
Q Consensus       119 ~  119 (351)
                      .
T Consensus        89 ~   89 (114)
T cd02954          89 N   89 (114)
T ss_pred             C
Confidence            3

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.37  E-value=7.6e-12  Score=104.86  Aligned_cols=120  Identities=20%  Similarity=0.394  Sum_probs=94.9

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC---HHHH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEF  214 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~  214 (351)
                      .....|+|++ +.+|+++++++++||++||+|..+.||. |...+..|.++.+++.+ .+.++++++|++|..   ++..
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~-~~~~v~~v~ISvDP~~DTp~~L  106 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE-EGKDVQFVFISVDPERDTPEVL  106 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH-TTTTEEEEEEESSTTTC-HHHH
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh-ccCceEEEEEEeCCCCCCHHHH
Confidence            3456789999 9999999999999999999999999988 99999999999999986 356899999999963   4566


Q ss_pred             HhhhccC--CceeeccCchhhHHHHHHcCcC----------------ceeeEEEECCCCceEec
Q 018726          215 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK----------------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       215 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~i~----------------~~P~~~lid~~G~v~~~  260 (351)
                      +++.+.+  .|..+....+....+++.|++.                ....++||||+|+++..
T Consensus       107 ~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~  170 (174)
T PF02630_consen  107 KKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI  170 (174)
T ss_dssp             HHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred             HHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence            6666643  3666666666667888888763                23469999999999875

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>TIGR02740 TraF-like TraF-like protein

Probab=99.36  E-value=2.2e-12  Score=115.35  Aligned_cols=89  Identities=22%  Similarity=0.355  Sum_probs=70.7

Q ss_pred             CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726          153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA  232 (351)
Q Consensus       153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~  232 (351)
                      ++...+++++|+++||+||++||++|+.+.|.|++++++++      +.|++|++|....           ..+|... .
T Consensus       156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-----------~~fp~~~-~  217 (271)
T TIGR02740       156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPL-----------PGFPNAR-P  217 (271)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-----------ccCCccc-C
Confidence            34577888999999999999999999999999999998874      6799999987531           1133332 2


Q ss_pred             hHHHHHHcCcCceeeEEEECCCCceEe
Q 018726          233 RQDLCRIFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       233 ~~~~~~~~~i~~~P~~~lid~~G~v~~  259 (351)
                      +..++++|||.++|+++|+|++|+.+.
T Consensus       218 d~~la~~~gV~~vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       218 DAGQAQQLKIRTVPAVFLADPDPNQFT  244 (271)
T ss_pred             CHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence            356889999999999999999655443

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.36  E-value=1.3e-12  Score=99.62  Aligned_cols=86  Identities=8%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             CCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--C
Q 018726           31 RQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--D  107 (351)
Q Consensus        31 ~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~  107 (351)
                      .+++ +...-.++++++|.||++||++|+.+.|.+.++++++++.   +.+..|++|... .+++.+++..+|++.+  +
T Consensus         6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~   81 (101)
T cd03003           6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR-MLCRSQGVNSYPSLYVFPS   81 (101)
T ss_pred             cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH-HHHHHcCCCccCEEEEEcC
Confidence            3344 4433346799999999999999999999999999998754   556666665443 4666677777788766  6


Q ss_pred             hHHHHHHhhhhhh
Q 018726          108 ETLHKKLRIRKRR  120 (351)
Q Consensus       108 ~~~~~~l~~~~~~  120 (351)
                      |....++.|....
T Consensus        82 g~~~~~~~G~~~~   94 (101)
T cd03003          82 GMNPEKYYGDRSK   94 (101)
T ss_pred             CCCcccCCCCCCH
Confidence            6555555543333

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.36  E-value=4.4e-12  Score=97.14  Aligned_cols=72  Identities=24%  Similarity=0.421  Sum_probs=61.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|.||++||++|+.+.|.+++++++++    ..+.+..|+++..                       ..++++|+
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   70 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK----GKVKVGSVDCQKY-----------------------ESLCQQAN   70 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCch-----------------------HHHHHHcC
Confidence            36799999999999999999999999999986    5688888888753                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++..+|+.+.+
T Consensus        71 i~~~Pt~~~~~~g~~~~~~   89 (104)
T cd03004          71 IRAYPTIRLYPGNASKYHS   89 (104)
T ss_pred             CCcccEEEEEcCCCCCceE
Confidence            9999999999655465555

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.36  E-value=4.1e-12  Score=96.70  Aligned_cols=71  Identities=23%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+|||.|+|+||+||+.+.|.|.+++++++    ..+.|+.|++|..                       .++++.|+
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~----~~~~f~kVDVDev-----------------------~dva~~y~   65 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS----KMASIYLVDVDKV-----------------------PVYTQYFD   65 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc----CceEEEEEecccc-----------------------HHHHHhcC
Confidence            57999999999999999999999999999996    3378888888864                       78999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.+.||++++ ++|+-+..
T Consensus        66 I~amPtfvff-kngkh~~~   83 (114)
T cd02986          66 ISYIPSTIFF-FNGQHMKV   83 (114)
T ss_pred             ceeCcEEEEE-ECCcEEEE
Confidence            9999999999 66665443

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.36  E-value=3.5e-12  Score=99.26  Aligned_cols=68  Identities=22%  Similarity=0.380  Sum_probs=58.3

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.|++++++++     ++.++.|+++.                       . .++++|+|
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----~v~f~~vd~~~-----------------------~-~l~~~~~i   74 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----ETKFVKINAEK-----------------------A-FLVNYLDI   74 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----CcEEEEEEchh-----------------------h-HHHHhcCC
Confidence            5899999999999999999999999999885     35566655542                       4 88999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus        75 ~~~Pt~~~f-~~G~~v~~   91 (113)
T cd02957          75 KVLPTLLVY-KNGELIDN   91 (113)
T ss_pred             CcCCEEEEE-ECCEEEEE
Confidence            999999999 88998877

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.9e-12  Score=109.61  Aligned_cols=76  Identities=24%  Similarity=0.528  Sum_probs=61.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|.++|+|+|+||+||+...|.+..+..+|+.       .|++.+|.++                     .+..+..+|
T Consensus        20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-------aVFlkVdVd~---------------------c~~taa~~g   71 (288)
T KOG0908|consen   20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-------AVFLKVDVDE---------------------CRGTAATNG   71 (288)
T ss_pred             CceEEEEEEEecccchHHhhhhHHHHhhhhCcc-------cEEEEEeHHH---------------------hhchhhhcC
Confidence            469999999999999999999999999999964       4444444433                     578899999


Q ss_pred             cCceeeEEEECCCCceEeccccceeeccCCcC
Q 018726          242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA  273 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~  273 (351)
                      |.++||++++ ++|+-+       .++.|+++
T Consensus        72 V~amPTFiff-~ng~ki-------d~~qGAd~   95 (288)
T KOG0908|consen   72 VNAMPTFIFF-RNGVKI-------DQIQGADA   95 (288)
T ss_pred             cccCceEEEE-ecCeEe-------eeecCCCH
Confidence            9999999999 555544       44788764

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.35  E-value=1e-11  Score=99.06  Aligned_cols=71  Identities=15%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++|||.|||+||+||+.+.|.|.+++++++    +.+.|+.|++|..                       .++++.|+
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kVDVDe~-----------------------~dla~~y~   74 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLVDITEV-----------------------PDFNTMYE   74 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999986    4577888998864                       79999999


Q ss_pred             cCceeeEE-EECCCCc-eEec
Q 018726          242 IKGIPALV-LIGPDGK-TIST  260 (351)
Q Consensus       242 i~~~P~~~-lid~~G~-v~~~  260 (351)
                      |.+.|+++ ++ ++|+ .+.+
T Consensus        75 I~~~~t~~~ff-k~g~~~vd~   94 (142)
T PLN00410         75 LYDPCTVMFFF-RNKHIMIDL   94 (142)
T ss_pred             ccCCCcEEEEE-ECCeEEEEE
Confidence            99887777 66 7887 5555

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.35  E-value=9.6e-12  Score=95.28  Aligned_cols=70  Identities=21%  Similarity=0.360  Sum_probs=57.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.|.|++++++++. .+.++.+..++++..                       ..++++|+
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~   69 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS-SGSPVRVGKLDATAY-----------------------SSIASEFG   69 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh-cCCcEEEEEEECccC-----------------------HhHHhhcC
Confidence            457999999999999999999999999999864 223467777766643                       57889999


Q ss_pred             cCceeeEEEECCCCc
Q 018726          242 IKGIPALVLIGPDGK  256 (351)
Q Consensus       242 i~~~P~~~lid~~G~  256 (351)
                      |.++||++++ .+|.
T Consensus        70 I~~~Pt~~l~-~~~~   83 (104)
T cd03000          70 VRGYPTIKLL-KGDL   83 (104)
T ss_pred             CccccEEEEE-cCCC
Confidence            9999999999 4443

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.35  E-value=7.2e-13  Score=101.33  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=56.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh--hhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKCMPWLAVPF--DETLHKKLR  115 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~~~--~~~~~~~l~  115 (351)
                      ..||+|+|+|||+||++|+.++|.+.++++++ ..   +.++.|++|.+.  ..+.+.+++..+|++.+  +|+...++.
T Consensus        13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~---v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~   88 (103)
T cd02985          13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-ND---VVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEE   88 (103)
T ss_pred             cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CC---CEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEe
Confidence            46999999999999999999999999999998 22   566667766543  24666777777888777  666554544


Q ss_pred             h
Q 018726          116 I  116 (351)
Q Consensus       116 ~  116 (351)
                      |
T Consensus        89 G   89 (103)
T cd02985          89 G   89 (103)
T ss_pred             C
Confidence            4

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.35  E-value=1.1e-12  Score=106.22  Aligned_cols=93  Identities=15%  Similarity=0.279  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec---ChHHHHHH
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF---DETLHKKL  114 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~---~~~~~~~l  114 (351)
                      ...||+++|+|||+||++|+.++|.+.++++++.+.   +.++.|++|.+. ....+.+++..+|++.+   +|+...++
T Consensus        17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~   93 (142)
T cd02950          17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQS   93 (142)
T ss_pred             HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEE
Confidence            357999999999999999999999999999998754   678888888754 24556677777777776   46666666


Q ss_pred             hhhhhhhHHhhhcccccccc
Q 018726          115 RIRKRREELKAIDDSKRQGG  134 (351)
Q Consensus       115 ~~~~~~~~l~~~~~~~~~~~  134 (351)
                      .|....+++...+.....+.
T Consensus        94 ~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          94 IGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             eCCCCHHHHHHHHHHHHcCC
Confidence            66555555655555544443

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.34  E-value=6.5e-12  Score=97.01  Aligned_cols=69  Identities=26%  Similarity=0.549  Sum_probs=60.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .|++++|.||++||++|+.+.|.+.++++.++    ..+.++.|+++.+.                     ...++++|+
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~---------------------~~~~~~~~~   71 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDCDEDK---------------------NKPLCGKYG   71 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEecCccc---------------------cHHHHHHcC
Confidence            47889999999999999999999999999886    56888889888632                     367899999


Q ss_pred             cCceeeEEEECCCC
Q 018726          242 IKGIPALVLIGPDG  255 (351)
Q Consensus       242 i~~~P~~~lid~~G  255 (351)
                      |.++|+++++++.+
T Consensus        72 i~~~Pt~~~~~~~~   85 (109)
T cd03002          72 VQGFPTLKVFRPPK   85 (109)
T ss_pred             CCcCCEEEEEeCCC
Confidence            99999999997665

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.34  E-value=1.2e-11  Score=93.50  Aligned_cols=71  Identities=23%  Similarity=0.467  Sum_probs=62.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++++||++||++|+.+.|.+.++.+++.    +++.++.|+.|..                       .++.++|+
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~d~~-----------------------~~l~~~~~   64 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDIDED-----------------------QEIAEAAG   64 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence            46899999999999999999999999998886    4678888887754                       57889999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        65 v~~vPt~~i~-~~g~~v~~   82 (97)
T cd02949          65 IMGTPTVQFF-KDKELVKE   82 (97)
T ss_pred             CeeccEEEEE-ECCeEEEE
Confidence            9999999999 58988866

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.34  E-value=9.2e-12  Score=96.70  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.|.|.++.++++     ++.++.|+++..                       ..++++|+
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----~i~f~~Vd~~~~-----------------------~~l~~~~~   72 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----ETKFIKVNAEKA-----------------------PFLVEKLN   72 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----CCEEEEEEcccC-----------------------HHHHHHCC
Confidence            35799999999999999999999999998874     367888887764                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        73 v~~vPt~l~f-k~G~~v~~   90 (113)
T cd02989          73 IKVLPTVILF-KNGKTVDR   90 (113)
T ss_pred             CccCCEEEEE-ECCEEEEE
Confidence            9999999999 89988876

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.33  E-value=6.3e-12  Score=95.80  Aligned_cols=71  Identities=23%  Similarity=0.566  Sum_probs=60.0

Q ss_pred             EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726          165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      .++|.||++||++|+.+.|.+.+++++++. ....+.++.|+++..                       ..++++|++.+
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~   73 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN-ENPSVKIAKVDCTQH-----------------------RELCSEFQVRG   73 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhc-cCCcEEEEEEECCCC-----------------------hhhHhhcCCCc
Confidence            499999999999999999999999999973 234688888877753                       57889999999


Q ss_pred             eeeEEEECCCCceEec
Q 018726          245 IPALVLIGPDGKTIST  260 (351)
Q Consensus       245 ~P~~~lid~~G~v~~~  260 (351)
                      +|+++++ ++|+++.+
T Consensus        74 ~Pt~~~~-~~g~~~~~   88 (102)
T cd03005          74 YPTLLLF-KDGEKVDK   88 (102)
T ss_pred             CCEEEEE-eCCCeeeE
Confidence            9999999 78876654

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.33  E-value=6.3e-12  Score=95.79  Aligned_cols=71  Identities=23%  Similarity=0.364  Sum_probs=64.0

Q ss_pred             CCcEEEEEEecCC--ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          162 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       162 ~gk~vll~F~a~~--C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      .|.+++|.||++|  ||+|+.+.|.|.+++++|.    +.+.++.|++|..                       ..++.+
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~----~~v~f~kVdid~~-----------------------~~la~~   78 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP----GRFRAAVVGRADE-----------------------QALAAR   78 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC----CcEEEEEEECCCC-----------------------HHHHHH
Confidence            5678999999997  9999999999999999997    5577888888875                       699999


Q ss_pred             cCcCceeeEEEECCCCceEec
Q 018726          240 FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~v~~~  260 (351)
                      |+|.++||++++ ++|+++.+
T Consensus        79 f~V~sIPTli~f-kdGk~v~~   98 (111)
T cd02965          79 FGVLRTPALLFF-RDGRYVGV   98 (111)
T ss_pred             cCCCcCCEEEEE-ECCEEEEE
Confidence            999999999999 89998877

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00062 glutaredoxin; Provisional

Probab=99.33  E-value=1.3e-11  Score=105.07  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhhhh
Q 018726           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRKRR  120 (351)
Q Consensus        43 k~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  120 (351)
                      ..++++|||+||++|+.+.|.+.++++++.      ++.|+.+|.+       +.+...|++.|  +|+...++.|... 
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~------~~~F~~V~~d-------~~V~~vPtfv~~~~g~~i~r~~G~~~-   83 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP------SLEFYVVNLA-------DANNEYGVFEFYQNSQLINSLEGCNT-   83 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCC------CcEEEEEccc-------cCcccceEEEEEECCEEEeeeeCCCH-
Confidence            457999999999999999999999999874      2666666655       67777787777  8888888877332 


Q ss_pred             hHHhhhccccccccchHHhhhccCCCcEecCCCcceeeccc-CCcEEEEEEec----CCChhhHHhHHHHHHHHHHhhcc
Q 018726          121 EELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSEL-AGKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTT  195 (351)
Q Consensus       121 ~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~~~-~gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~  195 (351)
                      .++...............+               .-.+.++ ..+.|+|+--+    ++|++|++....|.+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~---------------~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------  141 (204)
T PTZ00062         84 STLVSFIRGWAQKGSSEDT---------------VEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------  141 (204)
T ss_pred             HHHHHHHHHHcCCCCHHHH---------------HHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-------
Confidence            2332222221111111100               0011111 23455555443    6999999876666532       


Q ss_pred             cCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          196 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       196 ~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                         ++.+..++++.+.+.                   ...+.+.-|...+|.+++   +|+.+
T Consensus       142 ---~i~y~~~DI~~d~~~-------------------~~~l~~~sg~~TvPqVfI---~G~~I  179 (204)
T PTZ00062        142 ---GVKYETYNIFEDPDL-------------------REELKVYSNWPTYPQLYV---NGELI  179 (204)
T ss_pred             ---CCCEEEEEcCCCHHH-------------------HHHHHHHhCCCCCCeEEE---CCEEE
Confidence               234445566544211                   234555556678888775   35544

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.33  E-value=1.5e-11  Score=93.70  Aligned_cols=70  Identities=30%  Similarity=0.782  Sum_probs=62.1

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.|.++.+++.    .++.++.|+.+..                       ..++++|++
T Consensus        17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~v   69 (103)
T PF00085_consen   17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDCDEN-----------------------KELCKKYGV   69 (103)
T ss_dssp             SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhhhcc-----------------------chhhhccCC
Confidence            6899999999999999999999999999987    3788888888754                       689999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++|+++++ .+|+.+.+
T Consensus        70 ~~~Pt~~~~-~~g~~~~~   86 (103)
T PF00085_consen   70 KSVPTIIFF-KNGKEVKR   86 (103)
T ss_dssp             SSSSEEEEE-ETTEEEEE
T ss_pred             CCCCEEEEE-ECCcEEEE
Confidence            999999999 67777655

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.32  E-value=7.6e-12  Score=96.71  Aligned_cols=72  Identities=15%  Similarity=0.430  Sum_probs=60.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH-Hc
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF  240 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~  240 (351)
                      +||+++|.||++||++|+.+.|.+.++++.+++   .++.+..|++|.+                      ...+++ .|
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~----------------------~~~~~~~~~   74 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG---SNVKVAKFNADGE----------------------QREFAKEEL   74 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECCcc----------------------chhhHHhhc
Confidence            578999999999999999999999999999974   5788999988863                      245555 59


Q ss_pred             CcCceeeEEEECCCCceE
Q 018726          241 NIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~  258 (351)
                      ++.++||+++++++++..
T Consensus        75 ~v~~~Pti~~f~~~~~~~   92 (109)
T cd02993          75 QLKSFPTILFFPKNSRQP   92 (109)
T ss_pred             CCCcCCEEEEEcCCCCCc
Confidence            999999999997766533

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.32  E-value=2.2e-11  Score=94.75  Aligned_cols=76  Identities=25%  Similarity=0.462  Sum_probs=60.4

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.+.++++++++ ..+.+.+..|+++.+.                     ...+++.|++
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i   76 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCADEE---------------------NVALCRDFGV   76 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEeccchh---------------------hHHHHHhCCC
Confidence            47999999999999999999999999999864 2234777777765432                     4678999999


Q ss_pred             CceeeEEEECCCCceEecc
Q 018726          243 KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~~  261 (351)
                      .++|+++++ ++|+.....
T Consensus        77 ~~~Pt~~lf-~~~~~~~~~   94 (114)
T cd02992          77 TGYPTLRYF-PPFSKEATD   94 (114)
T ss_pred             CCCCEEEEE-CCCCccCCC
Confidence            999999999 555544443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.31  E-value=1.9e-11  Score=92.23  Aligned_cols=70  Identities=20%  Similarity=0.453  Sum_probs=60.2

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.+.|.++.+++.    .++.++.|+.+.                       ..++.++|++
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~----~~i~~~~vd~~~-----------------------~~~~~~~~~i   66 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF----PSVLFLSIEAEE-----------------------LPEISEKFEI   66 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC----CceEEEEEcccc-----------------------CHHHHHhcCC
Confidence            6899999999999999999999999998863    567777776554                       3578999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus        67 ~~~Pt~~~~-~~g~~~~~   83 (97)
T cd02984          67 TAVPTFVFF-RNGTIVDR   83 (97)
T ss_pred             ccccEEEEE-ECCEEEEE
Confidence            999999999 68998877

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.31  E-value=8.4e-12  Score=96.31  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=60.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      .+++++|.|||+||++|+.+.|.++++++.+++..  ...+.++.|++|..                       ..++++
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~   73 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADR   73 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHh
Confidence            46899999999999999999999999999886311  12477777877764                       689999


Q ss_pred             cCcCceeeEEEECCCCceE
Q 018726          240 FNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~v~  258 (351)
                      |+|.++||++++ ++|++.
T Consensus        74 ~~v~~~Ptl~~~-~~g~~~   91 (108)
T cd02996          74 YRINKYPTLKLF-RNGMMM   91 (108)
T ss_pred             CCCCcCCEEEEE-eCCcCc
Confidence            999999999999 788843

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.31  E-value=1.5e-11  Score=95.76  Aligned_cols=71  Identities=11%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             CcEEEEEEecCCChh--hH--HhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          163 GKTIGLYFGAHWCPP--CR--SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       163 gk~vll~F~a~~C~~--C~--~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ..++|++||++||+|  |+  .+.|.+.+++.++-+  ..++.|+.|++|..                       ..+++
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~--~~~v~~~kVD~d~~-----------------------~~La~   81 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE--DKGIGFGLVDSKKD-----------------------AKVAK   81 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh--cCCCEEEEEeCCCC-----------------------HHHHH
Confidence            358999999999987  99  888999999888721  16689999998864                       79999


Q ss_pred             HcCcCceeeEEEECCCCceEe
Q 018726          239 IFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~  259 (351)
                      +|+|.++||++++ ++|+++.
T Consensus        82 ~~~I~~iPTl~lf-k~G~~v~  101 (120)
T cd03065          82 KLGLDEEDSIYVF-KDDEVIE  101 (120)
T ss_pred             HcCCccccEEEEE-ECCEEEE
Confidence            9999999999999 7888764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.30  E-value=6.3e-12  Score=107.60  Aligned_cols=71  Identities=21%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-------CChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~~~~~~   99 (351)
                      +.+.+|+ +++++++||+|+|.|||+||++|+..+|.+.++++++++.|  ++|++|++|       .+.+.+.++.+..
T Consensus        24 l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e~~~~f~~~~  101 (199)
T PTZ00056         24 VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTKDIRKFNDKN  101 (199)
T ss_pred             EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHHHHHHHHHHc
Confidence            7899999 99999999999999999999999999999999999998887  899999975       2344566676644


Q ss_pred             C
Q 018726          100 P  100 (351)
Q Consensus       100 ~  100 (351)
                      +
T Consensus       102 ~  102 (199)
T PTZ00056        102 K  102 (199)
T ss_pred             C
Confidence            3

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.29  E-value=1.3e-11  Score=96.03  Aligned_cols=69  Identities=23%  Similarity=0.415  Sum_probs=55.7

Q ss_pred             eeCCCCc-ccccCCC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCG-GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~-gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +.+.+|+ ++++++. ||+++|.||++||++|+.++|.++++++.+.+.   +.++.++ +.+.+...++.+.++
T Consensus         5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~   75 (114)
T cd02967           5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHG   75 (114)
T ss_pred             eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhC
Confidence            6788999 9999986 999999999999999999999999999887543   6777664 555555656655444

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.29  E-value=2.3e-11  Score=92.54  Aligned_cols=70  Identities=23%  Similarity=0.478  Sum_probs=59.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.+.++++++.++.  ..++.++.++++..                       ..+.++|+
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~-----------------------~~~~~~~~   66 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG--DPDIVLAKVDATAE-----------------------KDLASRFG   66 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc--CCceEEEEEEccch-----------------------HHHHHhCC
Confidence            689999999999999999999999999998873  22577777777653                       68889999


Q ss_pred             cCceeeEEEECCCCc
Q 018726          242 IKGIPALVLIGPDGK  256 (351)
Q Consensus       242 i~~~P~~~lid~~G~  256 (351)
                      +.++|+++++++++.
T Consensus        67 i~~~P~~~~~~~~~~   81 (102)
T TIGR01126        67 VSGFPTIKFFPKGKK   81 (102)
T ss_pred             CCcCCEEEEecCCCc
Confidence            999999999977765

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.29  E-value=4.8e-12  Score=98.13  Aligned_cols=83  Identities=11%  Similarity=0.210  Sum_probs=59.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..|++++|+|||+||++|+.+.|.+.++++++++.+  +.+..|++|.+. .+.+.+++..+|++.+  +|+...++.|.
T Consensus        22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~~-~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~   98 (111)
T cd02963          22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHER-RLARKLGAHSVPAIVGIINGQVTFYHDSS   98 (111)
T ss_pred             cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEeccccH-HHHHHcCCccCCEEEEEECCEEEEEecCC
Confidence            478999999999999999999999999999997643  455555555443 4566667777777775  66654444554


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                      ...+.+..
T Consensus        99 ~~~~~l~~  106 (111)
T cd02963          99 FTKQHVVD  106 (111)
T ss_pred             CCHHHHHH
Confidence            44444443

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.28  E-value=1e-11  Score=102.01  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhc
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKC   98 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~   98 (351)
                      .|.+.+|+ +++++++||+|+|+|||+||+ |+..+|.++++++++++.|  +.++.|++|.       +.+.+.++.+.
T Consensus         6 ~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~f~~~   82 (152)
T cd00340           6 SVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKEFCET   82 (152)
T ss_pred             EEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHHHHHH
Confidence            37889999 999999999999999999999 9999999999999998777  8899998763       23446666643


Q ss_pred             ---CCceee
Q 018726           99 ---MPWLAV  104 (351)
Q Consensus        99 ---~~~~~~  104 (351)
                         +++|.+
T Consensus        83 ~~~~~fp~~   91 (152)
T cd00340          83 NYGVTFPMF   91 (152)
T ss_pred             hcCCCceee
Confidence               345544

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.28  E-value=5.1e-12  Score=96.42  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .|++++|+|||+||++|+.+.|.+.++++++++..  +.++.+++|  .....+.+++..+|++.+  +|+...++.|
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G   89 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGELVAVIRG   89 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCEEEEEEec
Confidence            68999999999999999999999999999987432  455556555  345566677777777776  6665555554

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.27  E-value=9.6e-12  Score=93.75  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=57.1

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+|++++|+||++||++|+.+.|.+.++++.+.+.   +.++.|+++... .+.+.++...+|++.+  +|+...++.|.
T Consensus        10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~   85 (96)
T cd02956          10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-QIAQQFGVQALPTVYLFAAGQPVDGFQGA   85 (96)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-HHHHHcCCCCCCEEEEEeCCEEeeeecCC
Confidence            35889999999999999999999999999998653   444455544433 4666677777888876  66555555554


Q ss_pred             hhhhHH
Q 018726          118 KRREEL  123 (351)
Q Consensus       118 ~~~~~l  123 (351)
                      ...+++
T Consensus        86 ~~~~~l   91 (96)
T cd02956          86 QPEEQL   91 (96)
T ss_pred             CCHHHH
Confidence            333333

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PTZ00051 thioredoxin; Provisional

Probab=99.27  E-value=2.7e-11  Score=91.62  Aligned_cols=70  Identities=23%  Similarity=0.445  Sum_probs=59.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .++.++|+||++||++|+.+.+.+.++++++.     ++.++.|+.+.                       ...++++|+
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~   68 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----KMVFVKVDVDE-----------------------LSEVAEKEN   68 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----CcEEEEEECcc-----------------------hHHHHHHCC
Confidence            36899999999999999999999999998764     46677776654                       368899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~g~~~~~   86 (98)
T PTZ00051         69 ITSMPTFKVF-KNGSVVDT   86 (98)
T ss_pred             CceeeEEEEE-eCCeEEEE
Confidence            9999998888 89999877

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.8e-12  Score=97.59  Aligned_cols=73  Identities=19%  Similarity=0.405  Sum_probs=56.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..+|.++|+|||+|||||+.+.|.+.+|+.+|.+    +.++.+++|. -..+++.+++...||+.|  +|+...++.|.
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa   93 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA   93 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-CHhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence            3579999999999999999999999999999875    3566666665 334666666666677776  77777776663

>TIGR01068 thioredoxin thioredoxin

Probab=99.26  E-value=6.2e-11  Score=89.86  Aligned_cols=70  Identities=29%  Similarity=0.591  Sum_probs=61.5

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ++.++|.||++||++|+.+.+.+.++.++++    .++.++.|+.+..                       ..+.++|++
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v   66 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNVDEN-----------------------PDIAAKYGI   66 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcCC
Confidence            5799999999999999999999999998886    5688888888764                       578899999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++|+++++ ++|+++.+
T Consensus        67 ~~~P~~~~~-~~g~~~~~   83 (101)
T TIGR01068        67 RSIPTLLLF-KNGKEVDR   83 (101)
T ss_pred             CcCCEEEEE-eCCcEeee
Confidence            999999999 78887655

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.25  E-value=4e-11  Score=103.76  Aligned_cols=70  Identities=29%  Similarity=0.470  Sum_probs=59.5

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|+||++||++|+.+.|.+++++++++    ..+.+..|+++.                       ...++++|+|
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~v~~~~VD~~~-----------------------~~~l~~~~~I  104 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQVNVADLDATR-----------------------ALNLAKRFAI  104 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEecCcc-----------------------cHHHHHHcCC
Confidence            5799999999999999999999999999987    456676666654                       3688999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||+++++ +|+++..
T Consensus       105 ~~~PTl~~f~-~G~~v~~  121 (224)
T PTZ00443        105 KGYPTLLLFD-KGKMYQY  121 (224)
T ss_pred             CcCCEEEEEE-CCEEEEe
Confidence            9999999995 7877654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.25  E-value=3.1e-11  Score=92.21  Aligned_cols=75  Identities=23%  Similarity=0.453  Sum_probs=61.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+++.|.++++++.++.  ...+.++.|+++.+.                     ...+.++|+
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~---------------------~~~~~~~~~   72 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE--DGKGVLAAVDCTKPE---------------------HDALKEEYN   72 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh--CCceEEEEEECCCCc---------------------cHHHHHhCC
Confidence            467999999999999999999999999998873  245667777766521                     367889999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        73 i~~~Pt~~~~-~~g~~~~~   90 (104)
T cd02997          73 VKGFPTFKYF-ENGKFVEK   90 (104)
T ss_pred             CccccEEEEE-eCCCeeEE
Confidence            9999999888 68887655

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.24  E-value=1.4e-11  Score=95.14  Aligned_cols=84  Identities=14%  Similarity=0.357  Sum_probs=58.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCc-EEEEEEEecCChh-hHHHHHhcCCceeeec--ChH-HHHHH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE-LEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DET-LHKKL  114 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~-~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~-~~~~l  114 (351)
                      ..+++++|.|||+||++|+.+.|.+.++++.+++.... -.+.++.+|++.. .+++.+++..+|++.+  +|. ....+
T Consensus        16 ~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~   95 (108)
T cd02996          16 QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREY   95 (108)
T ss_pred             hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceec
Confidence            35789999999999999999999999999988653111 1355555555433 4667778788888876  665 33455


Q ss_pred             hhhhhhhHH
Q 018726          115 RIRKRREEL  123 (351)
Q Consensus       115 ~~~~~~~~l  123 (351)
                      .|....+.+
T Consensus        96 ~g~~~~~~l  104 (108)
T cd02996          96 RGQRSVEAL  104 (108)
T ss_pred             CCCCCHHHH
Confidence            554444444

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.23  E-value=2.3e-10  Score=89.90  Aligned_cols=85  Identities=21%  Similarity=0.200  Sum_probs=58.3

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      +.-++|+|+|+|+++||++|+.+.+..   .++.+.+.    .++.+|.|+.+... +..+.+              ...
T Consensus        11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~VkvD~~~~~-~~~~~~--------------~~~   71 (124)
T cd02955          11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKVDREERP-DVDKIY--------------MNA   71 (124)
T ss_pred             HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEEeCCcCc-HHHHHH--------------HHH
Confidence            344689999999999999999997632   24555544    45666666665432 111111              112


Q ss_pred             HHHHcCcCceeeEEEECCCCceEeccc
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTISTNG  262 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~~~~~  262 (351)
                      ....|++.++|+++++|++|++++..+
T Consensus        72 ~~~~~~~~G~Pt~vfl~~~G~~~~~~~   98 (124)
T cd02955          72 AQAMTGQGGWPLNVFLTPDLKPFFGGT   98 (124)
T ss_pred             HHHhcCCCCCCEEEEECCCCCEEeeee
Confidence            333679999999999999999998853

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.22  E-value=3.5e-11  Score=104.78  Aligned_cols=77  Identities=21%  Similarity=0.363  Sum_probs=63.4

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHH
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH   95 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~   95 (351)
                      .++ +.+.+|+ +++++++||+++|.|||+||++|+..+|.+.++++++++.|  ++|+.|++|.       +.+.+.++
T Consensus        80 PdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f  157 (236)
T PLN02399         80 HDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQF  157 (236)
T ss_pred             CceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHH
Confidence            344 7899999 99999999999999999999999999999999999999887  8999999852       33345665


Q ss_pred             H-h--cCCcee
Q 018726           96 F-K--CMPWLA  103 (351)
Q Consensus        96 ~-~--~~~~~~  103 (351)
                      . +  ..++|.
T Consensus       158 ~~~~~g~~fPv  168 (236)
T PLN02399        158 ACTRFKAEFPI  168 (236)
T ss_pred             HHHhcCCCCcc
Confidence            4 2  345554

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.22  E-value=3.4e-11  Score=93.52  Aligned_cols=78  Identities=17%  Similarity=0.314  Sum_probs=62.5

Q ss_pred             CCcEEEEEEec-------CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726          162 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  234 (351)
Q Consensus       162 ~gk~vll~F~a-------~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~  234 (351)
                      +|++++|.|||       +||++|+.+.|.|.++.++++    .++.++.|++|...                ...+...
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdvd~~~----------------~w~d~~~   79 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDVGDRP----------------YWRDPNN   79 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEcCCcc----------------cccCcch
Confidence            57899999999       999999999999999999886    46888888887632                1122246


Q ss_pred             HHHHHcCcC-ceeeEEEECCCCceEe
Q 018726          235 DLCRIFNIK-GIPALVLIGPDGKTIS  259 (351)
Q Consensus       235 ~~~~~~~i~-~~P~~~lid~~G~v~~  259 (351)
                      .++..|+|. ++||++++...++++.
T Consensus        80 ~~~~~~~I~~~iPT~~~~~~~~~l~~  105 (119)
T cd02952          80 PFRTDPKLTTGVPTLLRWKTPQRLVE  105 (119)
T ss_pred             hhHhccCcccCCCEEEEEcCCceecc
Confidence            888999998 9999999955444443

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.22  E-value=2.7e-11  Score=92.73  Aligned_cols=74  Identities=15%  Similarity=0.304  Sum_probs=54.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--Ch-HHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DE-TLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~~  117 (351)
                      .+++++|.|||+||++|+.+.|.+.++++++++.   +.++.|+++... .+++.+++..+|++.+  +| +...++.|.
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~   93 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-SLCQQANIRAYPTIRLYPGNASKYHSYNGW   93 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-HHHHHcCCCcccEEEEEcCCCCCceEccCC
Confidence            5779999999999999999999999999998643   455555554433 4666677777788876  44 555555553


Q ss_pred             h
Q 018726          118 K  118 (351)
Q Consensus       118 ~  118 (351)
                      .
T Consensus        94 ~   94 (104)
T cd03004          94 H   94 (104)
T ss_pred             C
Confidence            3

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.21  E-value=8.3e-11  Score=98.42  Aligned_cols=68  Identities=18%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++|||.||++||++|+.+.|.|.+++++|+     .+.++.|+++.                       . .++..|++
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----~vkF~kVd~d~-----------------------~-~l~~~f~v  133 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----AVKFCKIRASA-----------------------T-GASDEFDT  133 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----CeEEEEEeccc-----------------------h-hhHHhCCC
Confidence            4599999999999999999999999999885     36666666652                       2 68899999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus       134 ~~vPTllly-k~G~~v~~  150 (175)
T cd02987         134 DALPALLVY-KGGELIGN  150 (175)
T ss_pred             CCCCEEEEE-ECCEEEEE
Confidence            999999999 89998876

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.21  E-value=4.1e-11  Score=98.48  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=59.1

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-------CChhhHHHHHh
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHFK   97 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~~~~   97 (351)
                      .+.+.+|+ +++++++||+++|.|||+||++|+..+|.+.++++++++.|  +.++.|+++       .+.+.+.++.+
T Consensus         6 ~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~   82 (153)
T TIGR02540         6 EVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFAR   82 (153)
T ss_pred             eeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHH
Confidence            37889999 99999999999999999999999999999999999999877  889999863       22345666654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PLN02412 probable glutathione peroxidase

Probab=99.21  E-value=4.5e-11  Score=99.63  Aligned_cols=57  Identities=21%  Similarity=0.379  Sum_probs=54.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      |.+.+|+ +++++++||+++|.||++||++|++.+|.+.+++++|++.|  ++|+.|+.|
T Consensus        14 l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~   71 (167)
T PLN02412         14 VKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCN   71 (167)
T ss_pred             EECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEeccc
Confidence            7899999 99999999999999999999999999999999999999887  899999986

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.19  E-value=4.2e-11  Score=92.43  Aligned_cols=63  Identities=19%  Similarity=0.379  Sum_probs=51.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~  106 (351)
                      .|++++|.|||+||++|+.+.|.+.++++.+++.   +.++.+++|.+. ..+.+.++...+|++.+
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence            5889999999999999999999999999998754   677777777632 34666777777888876

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.19  E-value=4.6e-11  Score=92.33  Aligned_cols=65  Identities=17%  Similarity=0.390  Sum_probs=51.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH-HHHhcCCceeeec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE-EHFKCMPWLAVPF  106 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~-~~~~~~~~~~~~~  106 (351)
                      .+||+++|.||++||++|+++.|.+.++++.+++.+  +.+..|++|.+...++ +.++...+|++.+
T Consensus        19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~   84 (109)
T cd02993          19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQREFAKEELQLKSFPTILF   84 (109)
T ss_pred             hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence            368999999999999999999999999999998544  6676776665333444 4577777888876

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.18  E-value=6.1e-11  Score=90.33  Aligned_cols=65  Identities=15%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--CCceeeecChH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MPWLAVPFDET  109 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~~~~~~~~~~  109 (351)
                      ++|+|+|.|+|+||+||+.+.|.+.++++++++.   +.+..|++|.-. .+.+.++.  +|+..+.++|+
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-dva~~y~I~amPtfvffkngk   79 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-VYTQYFDISYIPSTIFFFNGQ   79 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-HHHHhcCceeCcEEEEEECCc
Confidence            6899999999999999999999999999998653   345555555433 36666554  55443333554

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.18  E-value=1.1e-10  Score=95.05  Aligned_cols=68  Identities=35%  Similarity=0.643  Sum_probs=60.2

Q ss_pred             eCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           29 LSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        29 ~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      .+.+|+ +++++++||+++|.||++ ||++|+..+|.+.++++.+++++  +++++|+.+.+.. ..++.+..
T Consensus        14 ~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~~~~~~   83 (146)
T PF08534_consen   14 LDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VREFLKKY   83 (146)
T ss_dssp             EETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHHHHHHT
T ss_pred             ecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHHHHHhh
Confidence            459999 999999999999999999 99999999999999999998887  8899999988765 56665544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.18  E-value=2.7e-10  Score=86.89  Aligned_cols=65  Identities=25%  Similarity=0.521  Sum_probs=56.5

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.+.+++++++    ..+.++.++++..                       ..++++|+|
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~id~~~~-----------------------~~~~~~~~i   70 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAVDADVH-----------------------QSLAQQYGV   70 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEEECcch-----------------------HHHHHHCCC
Confidence            5679999999999999999999999999886    4678888877753                       678899999


Q ss_pred             CceeeEEEECCCC
Q 018726          243 KGIPALVLIGPDG  255 (351)
Q Consensus       243 ~~~P~~~lid~~G  255 (351)
                      .++|++++++ +|
T Consensus        71 ~~~P~~~~~~-~~   82 (103)
T cd03001          71 RGFPTIKVFG-AG   82 (103)
T ss_pred             CccCEEEEEC-CC
Confidence            9999999995 44

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.18  E-value=5.8e-11  Score=90.93  Aligned_cols=81  Identities=17%  Similarity=0.356  Sum_probs=55.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec-ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF-DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~  118 (351)
                      ++++++|.|||+||++|+.+.|.+.++++.+++.+.  .+.+..+|.+. ..+.+.++...+|++.+ .++...++.|..
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~   91 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGS--PVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPR   91 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCC--cEEEEEEECccCHhHHhhcCCccccEEEEEcCCCceeecCCC
Confidence            567999999999999999999999999999976543  34444555432 34666677777778776 443333344433


Q ss_pred             hhhHH
Q 018726          119 RREEL  123 (351)
Q Consensus       119 ~~~~l  123 (351)
                      ..+.+
T Consensus        92 ~~~~l   96 (104)
T cd03000          92 TKDDI   96 (104)
T ss_pred             CHHHH
Confidence            33333

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.16  E-value=1.3e-10  Score=87.85  Aligned_cols=74  Identities=24%  Similarity=0.489  Sum_probs=61.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.+.+.++++.++  ...++.++.|+.+..                       ..+.++|+
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~-----------------------~~~~~~~~   68 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK--GDGKVVVAKVDCTAN-----------------------NDLCSEYG   68 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc--cCCceEEEEeeccch-----------------------HHHHHhCC
Confidence            45699999999999999999999999999884  126788888877753                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++|++++++++|+.+.+
T Consensus        69 i~~~Pt~~~~~~~~~~~~~   87 (101)
T cd02961          69 VRGYPTIKLFPNGSKEPVK   87 (101)
T ss_pred             CCCCCEEEEEcCCCccccc
Confidence            9999999999877644433

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.16  E-value=5.1e-11  Score=90.71  Aligned_cols=77  Identities=16%  Similarity=0.328  Sum_probs=52.3

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhhhhh
Q 018726           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRKRRE  121 (351)
Q Consensus        44 ~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  121 (351)
                      +++|.|||+||++|+.++|.+.++++++++....+.++.++++... ..++.++...+|++.+  +|....++.|....+
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~   96 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLD   96 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHH
Confidence            4999999999999999999999999999763222444444444333 4566666666777776  565444455443333

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.16  E-value=2.1e-10  Score=87.65  Aligned_cols=72  Identities=18%  Similarity=0.412  Sum_probs=60.0

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.+.++++.++.  ..++.++.++.+..                      ...++++|++
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~----------------------~~~~~~~~~i   73 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDDVVIAKVDADEA----------------------NKDLAKKYGV   73 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCCEEEEEEECCCc----------------------chhhHHhCCC
Confidence            57999999999999999999999999999862  25677888877752                      1588999999


Q ss_pred             CceeeEEEECCCCceE
Q 018726          243 KGIPALVLIGPDGKTI  258 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~  258 (351)
                      .++|+++++++.|+..
T Consensus        74 ~~~P~~~~~~~~~~~~   89 (105)
T cd02998          74 SGFPTLKFFPKGSTEP   89 (105)
T ss_pred             CCcCEEEEEeCCCCCc
Confidence            9999999997665443

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK09381 trxA thioredoxin; Provisional

Probab=99.15  E-value=4.1e-11  Score=92.56  Aligned_cols=96  Identities=18%  Similarity=0.299  Sum_probs=65.1

Q ss_pred             eeeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceee
Q 018726           27 FLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV  104 (351)
Q Consensus        27 ~l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (351)
                      .+...+++ +... ...+++++|+||++||++|+.+.|.++++++++.+.   +.+..+++|... ...+.++...+|++
T Consensus         4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~   79 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTL   79 (109)
T ss_pred             cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-hHHHhCCCCcCCEE
Confidence            34444444 3322 224789999999999999999999999999998754   667777777654 34555666667777


Q ss_pred             ec--ChHHHHHHhhhhhhhHHhhh
Q 018726          105 PF--DETLHKKLRIRKRREELKAI  126 (351)
Q Consensus       105 ~~--~~~~~~~l~~~~~~~~l~~~  126 (351)
                      .+  +|....++.|....+++...
T Consensus        80 ~~~~~G~~~~~~~G~~~~~~l~~~  103 (109)
T PRK09381         80 LLFKNGEVAATKVGALSKGQLKEF  103 (109)
T ss_pred             EEEeCCeEEEEecCCCCHHHHHHH
Confidence            76  66655555554444444433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.5e-11  Score=104.15  Aligned_cols=87  Identities=20%  Similarity=0.323  Sum_probs=68.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..-+||+|+||+|||++|+.++|.+++++..|++.   +.++.||+|.+. .+...+++..+|++..  +|.....+.|.
T Consensus        41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p-~vAaqfgiqsIPtV~af~dGqpVdgF~G~  116 (304)
T COG3118          41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP-MVAAQFGVQSIPTVYAFKDGQPVDGFQGA  116 (304)
T ss_pred             ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch-hHHHHhCcCcCCeEEEeeCCcCccccCCC
Confidence            35579999999999999999999999999999987   666666666544 4666677666677664  89988888887


Q ss_pred             hhhhHHhhhcccc
Q 018726          118 KRREELKAIDDSK  130 (351)
Q Consensus       118 ~~~~~l~~~~~~~  130 (351)
                      ...+.++.+.+..
T Consensus       117 qPesqlr~~ld~~  129 (304)
T COG3118         117 QPESQLRQFLDKV  129 (304)
T ss_pred             CcHHHHHHHHHHh
Confidence            7776776665543

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.13  E-value=8.2e-11  Score=93.86  Aligned_cols=66  Identities=12%  Similarity=0.349  Sum_probs=49.7

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC-Cceee-ec-ChH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-PWLAV-PF-DET  109 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~-~~~~~-~~-~~~  109 (351)
                      ..+++|+|+|||+||+||+.+.|.+.++++++++.   +.|+.|++|... .+.+.++.. +-|++ .| +|.
T Consensus        21 ~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-dla~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         21 EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-DFNTMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-HHHHHcCccCCCcEEEEEECCe
Confidence            36889999999999999999999999999998765   455666666444 466666666 33455 44 665

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.13  E-value=6e-11  Score=92.65  Aligned_cols=79  Identities=18%  Similarity=0.418  Sum_probs=56.7

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC--ceeeec---ChH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP--WLAVPF---DET  109 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~~~---~~~  109 (351)
                      +..+..+||+|+|+|||+||++|+.+.|.+.+........   ..++.+++|.+.+...+.++..+  +|++.|   +|+
T Consensus        12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk   88 (117)
T cd02959          12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD   88 (117)
T ss_pred             HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence            4445568999999999999999999999999987765432   35777888876544444555443  788877   566


Q ss_pred             HHHHHhh
Q 018726          110 LHKKLRI  116 (351)
Q Consensus       110 ~~~~l~~  116 (351)
                      ...++.+
T Consensus        89 ~~~~~~~   95 (117)
T cd02959          89 VHPEIIN   95 (117)
T ss_pred             Cchhhcc
Confidence            6555443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.13  E-value=1.7e-10  Score=91.54  Aligned_cols=66  Identities=24%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-----CChhhHHHHHhcCC
Q 018726           33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKCMP  100 (351)
Q Consensus        33 g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~  100 (351)
                      |+ +++++++||+++|+||++||++|++.+|.++++++++++.+  +.++.|+.+     .+.+.++++.+...
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~   84 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG   84 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC
Confidence            45 99999999999999999999999999999999999998766  888888763     23445666666443

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.13  E-value=1e-10  Score=89.07  Aligned_cols=79  Identities=19%  Similarity=0.423  Sum_probs=52.8

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+|+ ++|+|||+||++|+.+.|.+.++++.++..+  +.+..++++.+. .+.+.++...+|++.+  +|. ..++.|.
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~-~~~~~G~   89 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQEP-GLSGRFFVTALPTIYHAKDGV-FRRYQGP   89 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCCH-hHHHHcCCcccCEEEEeCCCC-EEEecCC
Confidence            3566 6899999999999999999999999875433  455555544333 4556667777777776  554 2344443


Q ss_pred             hhhhHH
Q 018726          118 KRREEL  123 (351)
Q Consensus       118 ~~~~~l  123 (351)
                      ...+++
T Consensus        90 ~~~~~l   95 (101)
T cd02994          90 RDKEDL   95 (101)
T ss_pred             CCHHHH
Confidence            333333

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.12  E-value=1e-10  Score=89.35  Aligned_cols=63  Identities=24%  Similarity=0.479  Sum_probs=49.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      .+++++|.||++||++|+.+.|.+.++++.+++.   ..+.++.+|++.......+....+|++.+
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~id~~~~~~~~~~~~~~~Pt~~~   79 (104)
T cd02995          17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD---DNVVIAKMDATANDVPSEFVVDGFPTILF   79 (104)
T ss_pred             CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC---CCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence            4689999999999999999999999999998763   23556666665555555556567788876

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.12  E-value=2.1e-09  Score=92.29  Aligned_cols=115  Identities=20%  Similarity=0.447  Sum_probs=92.5

Q ss_pred             CcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH---HHHHhhhc-
Q 018726          146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS-  219 (351)
Q Consensus       146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~-  219 (351)
                      +|++ +.+|+++++..++||+++|+|..+.||. |..++..|.++.++..+....++++++|++|.+.   +..+++.. 
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~  128 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL  128 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence            7999 9999999999999999999999999998 9999999999999998335688999999999643   44445544 


Q ss_pred             cC--CceeeccCchhhHHHHHHcCcCc---------------eeeEEEECCCCceEec
Q 018726          220 IM--PWLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~--~~~~~~~~~d~~~~~~~~~~i~~---------------~P~~~lid~~G~v~~~  260 (351)
                      ..  .|..+....+...++++.|++..               ...++++|++|+++..
T Consensus       129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~  186 (207)
T COG1999         129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT  186 (207)
T ss_pred             cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence            11  25555555556778888887752               3458999999999877

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.12  E-value=1.7e-10  Score=111.03  Aligned_cols=54  Identities=17%  Similarity=0.234  Sum_probs=48.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      +.+.+|+ +.++  +||+|+|+|||+||++|+.++|.+.+++++++..+  ++|+.|++
T Consensus        43 l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~   97 (521)
T PRK14018         43 TADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVAS   97 (521)
T ss_pred             eecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEec
Confidence            7899998 8776  89999999999999999999999999999987555  78888875

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.11  E-value=1.8e-10  Score=88.11  Aligned_cols=82  Identities=17%  Similarity=0.320  Sum_probs=58.6

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCCceeeec-C---hH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMPWLAVPF-D---ET  109 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~~~~~~~-~---~~  109 (351)
                      .+||+++|.||++||++|+++.|.+   .++++.+.+ +  +.++.|+++.+.   ..+.+.++...+|++.+ +   |+
T Consensus         9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~   85 (104)
T cd02953           9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEP   85 (104)
T ss_pred             HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCC
Confidence            4689999999999999999999988   678888765 2  677777776542   34666777777888877 3   44


Q ss_pred             HHHHHhhhhhhhHHh
Q 018726          110 LHKKLRIRKRREELK  124 (351)
Q Consensus       110 ~~~~l~~~~~~~~l~  124 (351)
                      ...++.|....+++.
T Consensus        86 ~~~~~~G~~~~~~l~  100 (104)
T cd02953          86 EPLRLPGFLTADEFL  100 (104)
T ss_pred             CCcccccccCHHHHH
Confidence            445555544444443

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.11  E-value=7e-11  Score=89.95  Aligned_cols=82  Identities=27%  Similarity=0.496  Sum_probs=61.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ++++++|.||++||++|+.+.|.+.++++.+.+.     +.++.+|.+.. ...+.++...+|++.+  +|....++.+.
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~-----v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~   90 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDN-----VKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGP   90 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTT-----SEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESS
T ss_pred             cCCCEEEEEeCCCCCccccccceecccccccccc-----cccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECC
Confidence            4799999999999999999999999999998862     44555554433 5777788888888887  67666566665


Q ss_pred             hhhhHHhhhc
Q 018726          118 KRREELKAID  127 (351)
Q Consensus       118 ~~~~~l~~~~  127 (351)
                      ...+.+..++
T Consensus        91 ~~~~~l~~~i  100 (103)
T PF00085_consen   91 RNAESLIEFI  100 (103)
T ss_dssp             SSHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            4555554443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00062 glutaredoxin; Provisional

Probab=99.11  E-value=2.7e-10  Score=96.96  Aligned_cols=108  Identities=9%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726          164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  243 (351)
Q Consensus       164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  243 (351)
                      ..+|++|||+||++|+.+.|.+.++.++|++       +.++.+|.+                             |+|.
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-------~~F~~V~~d-----------------------------~~V~   61 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-------LEFYVVNLA-----------------------------DANN   61 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-------cEEEEEccc-----------------------------cCcc
Confidence            4679999999999999999999999999863       445555531                             8999


Q ss_pred             ceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCcCCC-----ccccCCCcceeeeecCCc---
Q 018726          244 GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR-----EVKDVKHEHELKLDMAKA---  315 (351)
Q Consensus       244 ~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~-----~~~~~~~~~~l~l~~~~~---  315 (351)
                      ++|+++++ ++|+++.+       +.|++        ..+|...++......+.     .+...+..++..+..-|.   
T Consensus        62 ~vPtfv~~-~~g~~i~r-------~~G~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~  125 (204)
T PTZ00062         62 EYGVFEFY-QNSQLINS-------LEGCN--------TSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTF  125 (204)
T ss_pred             cceEEEEE-ECCEEEee-------eeCCC--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCC
Confidence            99999999 89998887       55654        33444444443332221     133344556666654442   


Q ss_pred             eeeccccC
Q 018726          316 YVCDCCKM  323 (351)
Q Consensus       316 ~~Cd~C~~  323 (351)
                      ..|..|.+
T Consensus       126 p~C~~C~~  133 (204)
T PTZ00062        126 PFCRFSNA  133 (204)
T ss_pred             CCChhHHH
Confidence            47888875

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.11  E-value=2.2e-10  Score=96.98  Aligned_cols=57  Identities=28%  Similarity=0.443  Sum_probs=51.5

Q ss_pred             eeCCCCc-ccccCCCCCeE-EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           28 LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v-~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +.+.+|+ +++++++||++ ++.|||+||++|+..+|.+.++++++++.|  +.++.|++|
T Consensus        25 l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~   83 (183)
T PTZ00256         25 AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCN   83 (183)
T ss_pred             eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecc
Confidence            7889999 99999999965 456699999999999999999999998877  889999875

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.10  E-value=2.2e-10  Score=91.00  Aligned_cols=75  Identities=27%  Similarity=0.440  Sum_probs=59.7

Q ss_pred             eeCCCC--c-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--Cce
Q 018726           28 LLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PWL  102 (351)
Q Consensus        28 l~~~~g--~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~~  102 (351)
                      +.+.+|  . +++++++||+++|.||++||++|+.++|.+.++++.+   +  ++++.|+.+.+.+.+.++.+..  +++
T Consensus         8 ~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~~~~~~~   82 (127)
T cd03010           8 LPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLARHGNPYA   82 (127)
T ss_pred             cccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHhcCCCCc
Confidence            666777  6 8888899999999999999999999999999998764   2  7899999887777777776654  344


Q ss_pred             eeecC
Q 018726          103 AVPFD  107 (351)
Q Consensus       103 ~~~~~  107 (351)
                      .+..+
T Consensus        83 ~~~~D   87 (127)
T cd03010          83 AVGFD   87 (127)
T ss_pred             eEEEC
Confidence            44443

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.10  E-value=6e-10  Score=90.20  Aligned_cols=80  Identities=28%  Similarity=0.537  Sum_probs=65.1

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhcC-CcEEEEEEEecCC---hhhHHHHHhcC--
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFKCM--   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~-~~~~iv~i~~d~~---~~~~~~~~~~~--   99 (351)
                      +.+.+|+ +++++++||+++|.||++||++ |++.++.+.++++++++.+ .++++++|+.|..   .+.+.++.+..  
T Consensus         7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~   86 (142)
T cd02968           7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGP   86 (142)
T ss_pred             EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            7889999 9999999999999999999998 9999999999999998764 4589999999853   34566666655  


Q ss_pred             CceeeecC
Q 018726          100 PWLAVPFD  107 (351)
Q Consensus       100 ~~~~~~~~  107 (351)
                      +|+.+...
T Consensus        87 ~~~~l~~~   94 (142)
T cd02968          87 GWIGLTGT   94 (142)
T ss_pred             CcEEEECC
Confidence            45544433

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.09  E-value=8.8e-10  Score=86.66  Aligned_cols=79  Identities=24%  Similarity=0.464  Sum_probs=57.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCch-hhHHHHHHc
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIF  240 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~  240 (351)
                      .|+.++|+|+++|||+|+.+.|.|.++.++.+      +.|..|++|.+..             ...... .-.++.+.|
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~------~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK------APIYYIDSENNGS-------------FEMSSLNDLTAFRSRF   82 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC------CcEEEEECCCccC-------------cCcccHHHHHHHHHHc
Confidence            36789999999999999999999999988733      4688999885420             000000 123555665


Q ss_pred             C----cCceeeEEEECCCCceEec
Q 018726          241 N----IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~----i~~~P~~~lid~~G~v~~~  260 (351)
                      +    +.++||++++ ++|+.+.+
T Consensus        83 ~i~~~i~~~PT~v~~-k~Gk~v~~  105 (122)
T TIGR01295        83 GIPTSFMGTPTFVHI-TDGKQVSV  105 (122)
T ss_pred             CCcccCCCCCEEEEE-eCCeEEEE
Confidence            5    5569999999 89998877

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.09  E-value=5.7e-10  Score=86.66  Aligned_cols=63  Identities=11%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ++.++|+||++||++|+.+.|.|.++.+++     +.+.+..|+.|..                       .+++++|++
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-----~~i~~~~vd~d~~-----------------------~~l~~~~~v   73 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-----DKLKLEIYDFDED-----------------------KEKAEKYGV   73 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-----CceEEEEEeCCcC-----------------------HHHHHHcCC
Confidence            457889999999999999999999998775     3477888888754                       688999999


Q ss_pred             CceeeEEEECC
Q 018726          243 KGIPALVLIGP  253 (351)
Q Consensus       243 ~~~P~~~lid~  253 (351)
                      .++||+++++.
T Consensus        74 ~~vPt~~i~~~   84 (113)
T cd02975          74 ERVPTTIFLQD   84 (113)
T ss_pred             CcCCEEEEEeC
Confidence            99999999953

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=8.4e-11  Score=111.05  Aligned_cols=111  Identities=18%  Similarity=0.295  Sum_probs=78.0

Q ss_pred             CCCCccccCC-CceeeecccCcceeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEE
Q 018726            5 NDQSKFIDSS-DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI   83 (351)
Q Consensus         5 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i   83 (351)
                      .+|+...++. ..+.+++++..+.+...         ++|-|||.||||||+||+++.|.+++|++.|++.   -++++.
T Consensus       355 kSqpiPe~~~~~pVkvvVgknfd~iv~d---------e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviA  422 (493)
T KOG0190|consen  355 KSQPIPEDNDRSPVKVVVGKNFDDIVLD---------EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIA  422 (493)
T ss_pred             ccCCCCcccccCCeEEEeecCHHHHhhc---------cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEE
Confidence            5666666666 45677776666664444         6889999999999999999999999999999986   368999


Q ss_pred             EecCChhhHHH-HHhcCCceeeec--ChH--HHHHHhhhhhhhHHhhhccc
Q 018726           84 SFDHDENGFEE-HFKCMPWLAVPF--DET--LHKKLRIRKRREELKAIDDS  129 (351)
Q Consensus        84 ~~d~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~l~~~~~~~~l~~~~~~  129 (351)
                      .+|.+.+.+.. .+.+  +||+.|  .|.  ....+.+.....++...++.
T Consensus       423 KmDaTaNd~~~~~~~~--fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~  471 (493)
T KOG0190|consen  423 KMDATANDVPSLKVDG--FPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKK  471 (493)
T ss_pred             EeccccccCccccccc--cceEEEecCCCCCCCcccCCCcchHHHHhhhcc
Confidence            99988766544 3555  567777  222  23334445555555554443

>PRK10996 thioredoxin 2; Provisional

Probab=99.08  E-value=1.8e-10  Score=93.00  Aligned_cols=82  Identities=12%  Similarity=0.331  Sum_probs=58.2

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+|+|+||++||++|+.+.|.+.++++++.+.   +.++.++++... .+.+.+++..+|++.+  +|+...++.|.
T Consensus        50 ~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~V~~~Ptlii~~~G~~v~~~~G~  125 (139)
T PRK10996         50 QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-ELSARFRIRSIPTIMIFKNGQVVDMLNGA  125 (139)
T ss_pred             hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-HHHHhcCCCccCEEEEEECCEEEEEEcCC
Confidence            36899999999999999999999999999987654   445445444333 4666677777788776  66655555554


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                      ...+.+..
T Consensus       126 ~~~e~l~~  133 (139)
T PRK10996        126 VPKAPFDS  133 (139)
T ss_pred             CCHHHHHH
Confidence            44344433

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.08  E-value=1.3e-10  Score=94.45  Aligned_cols=74  Identities=15%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC------ceeeec--ChHHH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP------WLAVPF--DETLH  111 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~------~~~~~~--~~~~~  111 (351)
                      ..+++++|+|||+||++|+.+.|.++++++++.+.+  +.++.|++|... ...+.+++..      +||+.+  +|+..
T Consensus        45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v  121 (152)
T cd02962          45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEV  121 (152)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence            357899999999999999999999999999986543  566666666554 3455555543      566665  77665


Q ss_pred             HHHhh
Q 018726          112 KKLRI  116 (351)
Q Consensus       112 ~~l~~  116 (351)
                      .++.+
T Consensus       122 ~r~~G  126 (152)
T cd02962         122 ARRPY  126 (152)
T ss_pred             EEEec
Confidence            55554

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.08  E-value=2.4e-10  Score=99.31  Aligned_cols=70  Identities=13%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             CCcEEEEEEec---CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          162 AGKTIGLYFGA---HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       162 ~gk~vll~F~a---~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ++...++.|++   +||++|+.+.|.++++.+++.     ++.+..+++|.+.                     ...+++
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~---------------------~~~l~~   71 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPE---------------------DKEEAE   71 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcc---------------------cHHHHH
Confidence            44455666777   999999999999999998874     3556666666432                     479999


Q ss_pred             HcCcCceeeEEEECCCCceE
Q 018726          239 IFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~  258 (351)
                      +|+|.++||++++ ++|+.+
T Consensus        72 ~~~V~~~Pt~~~f-~~g~~~   90 (215)
T TIGR02187        72 KYGVERVPTTIIL-EEGKDG   90 (215)
T ss_pred             HcCCCccCEEEEE-eCCeee
Confidence            9999999999999 567665

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.07  E-value=6.5e-10  Score=94.29  Aligned_cols=66  Identities=14%  Similarity=0.242  Sum_probs=55.9

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++|||.||++||++|+.+.|.|.+++++|.     .+.|+.|+++.                          ....|++
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----~vkFvkI~ad~--------------------------~~~~~~i  150 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----DTKFVKIISTQ--------------------------CIPNYPD  150 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----CCEEEEEEhHH--------------------------hHhhCCC
Confidence            4699999999999999999999999999985     35666665542                          2478999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus       151 ~~lPTlliy-k~G~~v~~  167 (192)
T cd02988         151 KNLPTILVY-RNGDIVKQ  167 (192)
T ss_pred             CCCCEEEEE-ECCEEEEE
Confidence            999999999 89998877

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.06  E-value=2.3e-10  Score=90.68  Aligned_cols=84  Identities=21%  Similarity=0.354  Sum_probs=58.7

Q ss_pred             CCC-CeEEEEEeCCCChhhhhhhHHHH---HHHHHHhhcCCcEEEEEEEecCC------------hhhHHHHHhcCCcee
Q 018726           40 CGG-KTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHD------------ENGFEEHFKCMPWLA  103 (351)
Q Consensus        40 ~~g-k~v~v~F~a~wC~~C~~~~p~~~---~l~~~~~~~~~~~~iv~i~~d~~------------~~~~~~~~~~~~~~~  103 (351)
                      .+| |+++|.||++||++|+.++|.+.   ++.+.+++.   +.++.+++|.+            ...+...++...+|+
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt   87 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT   87 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence            478 99999999999999999999885   566666543   67777777754            235666777777888


Q ss_pred             eec---C-hHHHHHHhhhhhhhHHhhh
Q 018726          104 VPF---D-ETLHKKLRIRKRREELKAI  126 (351)
Q Consensus       104 ~~~---~-~~~~~~l~~~~~~~~l~~~  126 (351)
                      +.+   + |+...++.|....+.+...
T Consensus        88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~  114 (125)
T cd02951          88 VIFLDPEGGKEIARLPGYLPPDEFLAY  114 (125)
T ss_pred             EEEEcCCCCceeEEecCCCCHHHHHHH
Confidence            777   3 4545555554433444333

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.06  E-value=8.2e-10  Score=92.59  Aligned_cols=72  Identities=28%  Similarity=0.593  Sum_probs=63.6

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW  101 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+...+.+.++++++++.+  ++++.|+.|.+.+.+.++.+..+.
T Consensus        46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~~  118 (173)
T PRK03147         46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGL  118 (173)
T ss_pred             eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhCC
Confidence            7789999 99999999999999999999999999999999999998765  889999999877777777665543

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.05  E-value=5.4e-10  Score=86.94  Aligned_cols=66  Identities=20%  Similarity=0.420  Sum_probs=50.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~  106 (351)
                      .+++++|.||++||++|+.+.|.++++++.+++....+.+..++++.+. ..+++.++...+|++.+
T Consensus        18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence            3589999999999999999999999999998764322444444444332 34677777778888887

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=99.05  E-value=2.8e-09  Score=91.04  Aligned_cols=119  Identities=18%  Similarity=0.322  Sum_probs=95.9

Q ss_pred             CcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHhhhcc
Q 018726          146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHSI  220 (351)
Q Consensus       146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~  220 (351)
                      .|++ +.+|+.++-.++.||++|++|..+.||. |..++..|.++.+++.+..+..+.-++|++|.   +.+.++.+++.
T Consensus       121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e  200 (280)
T KOG2792|consen  121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE  200 (280)
T ss_pred             ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence            5888 9999999999999999999999999998 99999999999999876433444578999997   56788888886


Q ss_pred             CC--ceeeccCchhhHHHHHHcCcCc---------------eeeEEEECCCCceEeccccc
Q 018726          221 MP--WLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTISTNGKE  264 (351)
Q Consensus       221 ~~--~~~~~~~~d~~~~~~~~~~i~~---------------~P~~~lid~~G~v~~~~~~~  264 (351)
                      +.  .+.+....+.-+.+++.|.|.-               .=.+|||||+|+.+...|++
T Consensus       201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN  261 (280)
T KOG2792|consen  201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN  261 (280)
T ss_pred             cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence            55  4555666666778889887732               22589999999999875543

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.05  E-value=5.3e-10  Score=93.96  Aligned_cols=67  Identities=13%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~   97 (351)
                      +.+.+|+ +++++++||+++|.|||+||+.|. .+|.|++++++|++.|  +.|+.++++.       +.+.+.++.+
T Consensus        10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~~f~~   84 (183)
T PRK10606         10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIKTYCR   84 (183)
T ss_pred             eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHHHHHH
Confidence            7789999 999999999999999999999996 5999999999999887  8999999862       3445666664

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.04  E-value=1.8e-09  Score=85.20  Aligned_cols=77  Identities=35%  Similarity=0.689  Sum_probs=63.5

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--C
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--M   99 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~   99 (351)
                      +++ +.+.+|+ +++++++||+++|.||++ ||++|+..++.+.+++++++.++  ++++.|+.|..+ ...++.+.  .
T Consensus         6 P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~-~~~~~~~~~~~   82 (124)
T PF00578_consen    6 PDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPE-EIKQFLEEYGL   82 (124)
T ss_dssp             GCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHH-HHHHHHHHHTC
T ss_pred             CCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccccc-chhhhhhhhcc
Confidence            344 7899999 999999999999999999 99999999999999999999877  899999997544 44444442  4


Q ss_pred             Cceee
Q 018726          100 PWLAV  104 (351)
Q Consensus       100 ~~~~~  104 (351)
                      ++|.+
T Consensus        83 ~~~~~   87 (124)
T PF00578_consen   83 PFPVL   87 (124)
T ss_dssp             SSEEE
T ss_pred             ccccc
Confidence            55444

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.03  E-value=3.2e-10  Score=86.58  Aligned_cols=76  Identities=16%  Similarity=0.395  Sum_probs=53.1

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .++++++|.||++||++|+.+.|.+.++++.+.+.+ .+.++.++++.+ ...+.+.++...+|++.+  +|+...++.|
T Consensus        15 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g   93 (104)
T cd02997          15 KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEG   93 (104)
T ss_pred             hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCC
Confidence            357799999999999999999999999999987532 144444444432 234666677777788766  5543333433

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.02  E-value=3.1e-09  Score=77.40  Aligned_cols=62  Identities=23%  Similarity=0.384  Sum_probs=52.1

Q ss_pred             EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726          166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  245 (351)
Q Consensus       166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  245 (351)
                      .+..||++||++|+...+.|++++++++    ..+.++.|+.+.+                       ..+.++|++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~v   54 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINVMEN-----------------------PQKAMEYGIMAV   54 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeCccC-----------------------HHHHHHcCCccC
Confidence            4678999999999999999999999886    4578888887754                       567788999999


Q ss_pred             eeEEEECCCCce
Q 018726          246 PALVLIGPDGKT  257 (351)
Q Consensus       246 P~~~lid~~G~v  257 (351)
                      |++++   +|+.
T Consensus        55 Pt~~~---~g~~   63 (82)
T TIGR00411        55 PAIVI---NGDV   63 (82)
T ss_pred             CEEEE---CCEE
Confidence            99886   5654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.02  E-value=4.4e-10  Score=85.37  Aligned_cols=83  Identities=17%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ++++++|.||++||++|+.+.|.+.++++.+++.+   .+.++.+|.++. .+.+.++...+|++.+  +++...++.|.
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~   88 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP---DIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGG   88 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC---ceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence            79999999999999999999999999999987642   355566665544 4666677777888865  44334455554


Q ss_pred             hhhhHHhhh
Q 018726          118 KRREELKAI  126 (351)
Q Consensus       118 ~~~~~l~~~  126 (351)
                      ...+++..+
T Consensus        89 ~~~~~l~~~   97 (102)
T TIGR01126        89 RDLEAIVEF   97 (102)
T ss_pred             CCHHHHHHH
Confidence            444444443

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.02  E-value=3.3e-10  Score=98.01  Aligned_cols=84  Identities=17%  Similarity=0.320  Sum_probs=57.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+++++|+|||+||++|+.+.|.++++++++++.   +.+  ..+|.++. .+.+.+++..+|++.+  +|.......+.
T Consensus        51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~--~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~  125 (224)
T PTZ00443         51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNV--ADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGD  125 (224)
T ss_pred             CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEE--EEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCC
Confidence            4689999999999999999999999999998754   444  44555433 4666777777888876  55443333333


Q ss_pred             hhhhHHhhhccc
Q 018726          118 KRREELKAIDDS  129 (351)
Q Consensus       118 ~~~~~l~~~~~~  129 (351)
                      ...+++..++..
T Consensus       126 ~s~e~L~~fi~~  137 (224)
T PTZ00443        126 RSTEKLAAFALG  137 (224)
T ss_pred             CCHHHHHHHHHH
Confidence            444455444433

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.01  E-value=2e-09  Score=102.41  Aligned_cols=71  Identities=17%  Similarity=0.385  Sum_probs=58.8

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .+++++||+|||+||++|+.+.|.|.+++++++.   .++.|+.|++|.+.                     .....+.|
T Consensus       369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~---~~v~~~kVdvD~~~---------------------~~~~~~~~  424 (463)
T TIGR00424       369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG---SGVKVAKFRADGDQ---------------------KEFAKQEL  424 (463)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCc---------------------cHHHHHHc
Confidence            3678999999999999999999999999999974   46889999988652                     12334789


Q ss_pred             CcCceeeEEEECCCCc
Q 018726          241 NIKGIPALVLIGPDGK  256 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~  256 (351)
                      +|.++||++++ ++|.
T Consensus       425 ~I~~~PTii~F-k~g~  439 (463)
T TIGR00424       425 QLGSFPTILFF-PKHS  439 (463)
T ss_pred             CCCccceEEEE-ECCC
Confidence            99999999999 4443

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.01  E-value=5.6e-10  Score=84.28  Aligned_cols=79  Identities=25%  Similarity=0.440  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+++|.||++||++|+.+.|.+.++++++.+.   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.+..
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~   87 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-EIAEAAGIMGTPTVQFFKDKELVKEISGVK   87 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-HHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence            6899999999999999999999999999998653   555555555433 4556666677777776  666555555544


Q ss_pred             hhhHH
Q 018726          119 RREEL  123 (351)
Q Consensus       119 ~~~~l  123 (351)
                      ..+++
T Consensus        88 ~~~~~   92 (97)
T cd02949          88 MKSEY   92 (97)
T ss_pred             cHHHH
Confidence            33333

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.01  E-value=2.2e-09  Score=81.86  Aligned_cols=67  Identities=21%  Similarity=0.468  Sum_probs=54.8

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ++.++|+||++||++|+.+.|.+.++++.++.  ..++.+..|+++.                        ..+...+++
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~------------------------~~~~~~~~~   71 (104)
T cd02995          18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG--DDNVVIAKMDATA------------------------NDVPSEFVV   71 (104)
T ss_pred             CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC--CCCEEEEEEeCcc------------------------hhhhhhccC
Confidence            58999999999999999999999999999863  2457777777663                        346778899


Q ss_pred             CceeeEEEECCCCc
Q 018726          243 KGIPALVLIGPDGK  256 (351)
Q Consensus       243 ~~~P~~~lid~~G~  256 (351)
                      .++|+++++. +|+
T Consensus        72 ~~~Pt~~~~~-~~~   84 (104)
T cd02995          72 DGFPTILFFP-AGD   84 (104)
T ss_pred             CCCCEEEEEc-CCC
Confidence            9999999994 444

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.01  E-value=8.6e-10  Score=93.55  Aligned_cols=74  Identities=27%  Similarity=0.457  Sum_probs=55.9

Q ss_pred             eeCCC--Cc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--Cc
Q 018726           28 LLSRQ--GK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PW  101 (351)
Q Consensus        28 l~~~~--g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~  101 (351)
                      +.+.+  |+ ++++.+ +||+++|+|||+||++|++++|.+.++++    .+  ++++.|+.+.+.+...++.+..  ++
T Consensus        50 l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~~~~~~~~~~~~  123 (185)
T PRK15412         50 LESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPY  123 (185)
T ss_pred             CccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHHHHHHHHcCCCC
Confidence            56666  45 665554 79999999999999999999999988764    24  7899999887776666776644  45


Q ss_pred             eeeecC
Q 018726          102 LAVPFD  107 (351)
Q Consensus       102 ~~~~~~  107 (351)
                      |.+.+|
T Consensus       124 ~~~~~D  129 (185)
T PRK15412        124 ALSLFD  129 (185)
T ss_pred             ceEEEc
Confidence            544444

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.00  E-value=1.5e-09  Score=92.29  Aligned_cols=73  Identities=21%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             cCcce-eeCCCCc-cccc--CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           23 EGVEF-LLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~--~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      ..+++ +.+.+|+ ++++  ..+||+++|+||++||++|++++|.+.+++++.   +  +++++|+.| +.+...++.+.
T Consensus        51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~~-~~~~~~~~~~~  124 (189)
T TIGR02661        51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISDG-TPAEHRRFLKD  124 (189)
T ss_pred             cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeCC-CHHHHHHHHHh
Confidence            34455 8899999 9985  579999999999999999999999999988753   2  568888844 45566666665


Q ss_pred             CCc
Q 018726           99 MPW  101 (351)
Q Consensus        99 ~~~  101 (351)
                      .++
T Consensus       125 ~~~  127 (189)
T TIGR02661       125 HEL  127 (189)
T ss_pred             cCC
Confidence            553

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.4e-09  Score=84.02  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=93.9

Q ss_pred             hccCCCcEe----cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726          141 AIEGRDYVL----SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  213 (351)
Q Consensus       141 g~~~pdf~~----~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  213 (351)
                      ..++|+|.-    +..-+.++|++++||+|++.||...-.. |..++-.+...+.+|++   -+.+|+++|+|+..  -+
T Consensus         7 ~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~---~n~eVig~S~DS~fshlA   83 (196)
T KOG0852|consen    7 FKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK---LNTEVLGISTDSVFSHLA   83 (196)
T ss_pred             CCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh---cCCeEEEEeccchhhhhh
Confidence            445677754    5566889999999999999999655444 99999999999999987   88999999999643  34


Q ss_pred             HHhhhccC---CceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      |...-+..   +-..+|...|.+.++++.||+-      .+..++|||++|.++...
T Consensus        84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it  140 (196)
T KOG0852|consen   84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT  140 (196)
T ss_pred             HhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence            55444433   3356899999999999999983      467899999999998753

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.99  E-value=3e-10  Score=88.29  Aligned_cols=69  Identities=12%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      +++++|.||++||++|+.+.|.++++++++.+    +.  ++.+|.++..+++.++...+|++.+  +|+...++.|
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~--f~~vd~~~~~l~~~~~i~~~Pt~~~f~~G~~v~~~~G   94 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TK--FVKINAEKAFLVNYLDIKVLPTLLVYKNGELIDNIVG   94 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cE--EEEEEchhhHHHHhcCCCcCCEEEEEECCEEEEEEec
Confidence            58999999999999999999999999998753    34  4455544336667777777777776  7766555554

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.99  E-value=9.5e-10  Score=84.01  Aligned_cols=63  Identities=22%  Similarity=0.530  Sum_probs=50.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh--hhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~~~  106 (351)
                      .+|+++|.||++||++|+.+.|.+.++++.++..+   .+.++.+|.+.  ..+++.+....+|++.+
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANED---DVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCC---CEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            57799999999999999999999999999987331   35555566544  35777778888888876

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.2e-08  Score=80.52  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=86.5

Q ss_pred             CCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726          144 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD  215 (351)
Q Consensus       144 ~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~  215 (351)
                      .-||.+ +.+|+++++++++||++||.-.|+.|+.-.+. ..|+.||++|++   .++.|+++.++.       +.+++.
T Consensus         5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~---~Gf~VLgFPcNQF~~QEPg~~eEI~   80 (162)
T COG0386           5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKD---KGFEVLGFPCNQFGGQEPGSDEEIA   80 (162)
T ss_pred             cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhh---CCcEEEeccccccccCCCCCHHHHH
Confidence            347788 99999999999999999999999999998865 479999999987   999999999863       557888


Q ss_pred             hhhccCCceeeccCc------h----hhHHHHHHc-------CcCceeeEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYED------R----ARQDLCRIF-------NIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~------d----~~~~~~~~~-------~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ++....--+++|...      .    .-+.|...-       .|..-=+-+|||++|+|+.|.
T Consensus        81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf  143 (162)
T COG0386          81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF  143 (162)
T ss_pred             HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence            888743335554421      1    122233222       133445789999999999994

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.98  E-value=6.1e-10  Score=84.93  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             CCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726           40 CGGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLR  115 (351)
Q Consensus        40 ~~gk~v~v~F~a~w--C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  115 (351)
                      ..|.+++|.||++|  ||+|+.+.|.+.+++++|.+.   +.++.+++|.+. .++..+++..+||+.+  +|+...++.
T Consensus        25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-~la~~f~V~sIPTli~fkdGk~v~~~~  100 (111)
T cd02965          25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-ALAARFGVLRTPALLFFRDGRYVGVLA  100 (111)
T ss_pred             hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence            46778999999997  999999999999999998765   556666666555 6777778887888877  777665555


Q ss_pred             h
Q 018726          116 I  116 (351)
Q Consensus       116 ~  116 (351)
                      |
T Consensus       101 G  101 (111)
T cd02965         101 G  101 (111)
T ss_pred             C
Confidence            5

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.98  E-value=4e-09  Score=77.98  Aligned_cols=69  Identities=26%  Similarity=0.587  Sum_probs=59.2

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.+.++++.+. .    .++.++.++.+..                       ..+.+.|++
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----~~~~~~~i~~~~~-----------------------~~~~~~~~v   61 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----PKVKFVKVDVDEN-----------------------PELAEEYGV   61 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHH-C----CCceEEEEECCCC-----------------------hhHHHhcCc
Confidence            37899999999999999999999999887 2    6788888888864                       678899999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++|+++++ ++|+++..
T Consensus        62 ~~~P~~~~~-~~g~~~~~   78 (93)
T cd02947          62 RSIPTFLFF-KNGKEVDR   78 (93)
T ss_pred             ccccEEEEE-ECCEEEEE
Confidence            999999999 56776655

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.96  E-value=2.1e-09  Score=106.15  Aligned_cols=76  Identities=21%  Similarity=0.455  Sum_probs=59.7

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      +..+||+|+|+|||+||++|+.+.+.+   .++.++++     ++.++.|+++++.                   +...+
T Consensus       470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~~-------------------~~~~~  525 (571)
T PRK00293        470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DTVLLQADVTANN-------------------AEDVA  525 (571)
T ss_pred             HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCCC-------------------hhhHH
Confidence            334689999999999999999988764   55666653     4667777776431                   11468


Q ss_pred             HHHHcCcCceeeEEEECCCCceE
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      +.++|++.++|+++++|++|+++
T Consensus       526 l~~~~~v~g~Pt~~~~~~~G~~i  548 (571)
T PRK00293        526 LLKHYNVLGLPTILFFDAQGQEI  548 (571)
T ss_pred             HHHHcCCCCCCEEEEECCCCCCc
Confidence            89999999999999999999985

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.95  E-value=2.7e-09  Score=82.36  Aligned_cols=72  Identities=32%  Similarity=0.561  Sum_probs=62.1

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCc
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPW  101 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~  101 (351)
                      +.+.+|+ ++++++.||+++|.||++||++|++..+.+.++.+++.+.+  +.++.|++|.+ .+.+.++++..++
T Consensus         4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~   77 (116)
T cd02966           4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGI   77 (116)
T ss_pred             ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcCC
Confidence            5678888 99999999999999999999999999999999999987444  88999999876 6677777776653

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.95  E-value=1e-09  Score=104.31  Aligned_cols=65  Identities=17%  Similarity=0.362  Sum_probs=53.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHHHHhcCCceeeec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEHFKCMPWLAVPF  106 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~~~~~~~~~~~~~  106 (351)
                      ..+++|+|+|||+||++|+.+.|.|+++++++++.+  +.++.|++|.+... ..+.+++..+|++.+
T Consensus       369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~~~~~~~~~I~~~PTii~  434 (463)
T TIGR00424       369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQKEFAKQELQLGSFPTILF  434 (463)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence            478999999999999999999999999999997654  67777887766443 345567777777776

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.94  E-value=1.9e-09  Score=82.08  Aligned_cols=62  Identities=16%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      .+++++|.||++||++|+.+.|.+.++++++++.   +.++.++++... .+.+.++...+|++.+
T Consensus        17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-~~~~~~~i~~~P~~~~   78 (103)
T cd03001          17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ-SLAQQYGVRGFPTIKV   78 (103)
T ss_pred             CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH-HHHHHCCCCccCEEEE
Confidence            4677999999999999999999999999998754   556666555433 4566677777887766

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.94  E-value=1.4e-09  Score=114.42  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=47.1

Q ss_pred             CCCc-ccc-cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           31 RQGK-VPL-SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        31 ~~g~-~~~-~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      .+|+ +++ ++++||+|+|+|||+||++|+.++|.+++++++|++++  +.++.|+.
T Consensus       407 ~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~  461 (1057)
T PLN02919        407 LNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHS  461 (1057)
T ss_pred             cCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEec
Confidence            5677 877 57899999999999999999999999999999998776  88888863

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.93  E-value=4.8e-09  Score=82.38  Aligned_cols=101  Identities=12%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      +.-++|+++|+|++.||++|+.+...+-   ++.+..+    .++.+|.+..|...                      ..
T Consensus        19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~Fv~V~l~~d~td----------------------~~   72 (130)
T cd02960          19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDFIMLNLVHETTD----------------------KN   72 (130)
T ss_pred             HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCeEEEEEEeccCC----------------------CC
Confidence            3346899999999999999999987642   3333332    34444444444221                      00


Q ss_pred             HHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHh
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  291 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~  291 (351)
                      .. ..+ .++||++|+|++|+++.+--    ..++...|-..+..+..|.+..++.
T Consensus        73 ~~-~~g-~~vPtivFld~~g~vi~~i~----Gy~~~~~~~y~~~~~~~~~~~m~~a  122 (130)
T cd02960          73 LS-PDG-QYVPRIMFVDPSLTVRADIT----GRYSNRLYTYEPADIPLLIENMKKA  122 (130)
T ss_pred             cC-ccC-cccCeEEEECCCCCCccccc----ccccCccceeCcCcHHHHHHHHHHH
Confidence            00 123 57999999999999987732    2344455555566666666555543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR01068 thioredoxin thioredoxin

Probab=98.93  E-value=2.2e-09  Score=81.20  Aligned_cols=73  Identities=16%  Similarity=0.344  Sum_probs=53.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+++++|.||++||++|+.+.|.+.++++++.+.   +.++.++++.+. .+.+.++...+|++.+  +|+....+.|.
T Consensus        13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~P~~~~~~~g~~~~~~~g~   87 (101)
T TIGR01068        13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-DIAAKYGIRSIPTLLLFKNGKEVDRSVGA   87 (101)
T ss_pred             cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHHcCCCcCCEEEEEeCCcEeeeecCC
Confidence            4679999999999999999999999999888654   555555555443 4566677777888777  66544444443

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.6e-10  Score=94.77  Aligned_cols=76  Identities=26%  Similarity=0.500  Sum_probs=54.3

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh--HHHH-HhcCCceeeecChHHH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG--FEEH-FKCMPWLAVPFDETLH  111 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~--~~~~-~~~~~~~~~~~~~~~~  111 (351)
                      -+++..-+|.|+|+|+|+||+||+++.|.|.+++.+|.+      .||..+|.|+..  .+.+ ++.||+..+..+|...
T Consensus        14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ki   87 (288)
T KOG0908|consen   14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKI   87 (288)
T ss_pred             HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHHhhchhhhcCcccCceEEEEecCeEe
Confidence            345556789999999999999999999999999999953      566666666543  3333 5566543333377766


Q ss_pred             HHHhh
Q 018726          112 KKLRI  116 (351)
Q Consensus       112 ~~l~~  116 (351)
                      ..+.|
T Consensus        88 d~~qG   92 (288)
T KOG0908|consen   88 DQIQG   92 (288)
T ss_pred             eeecC
Confidence            66655

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.92  E-value=3.3e-09  Score=86.02  Aligned_cols=68  Identities=19%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +.+.+|+ ++++++.||+++|.||++| |++|+..+|.+.+++++++  +  +.++.|++|... ...++.+..+
T Consensus        11 l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~~~-~~~~~~~~~~   80 (143)
T cd03014          11 LVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADLPF-AQKRWCGAEG   80 (143)
T ss_pred             EECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCCHH-HHHHHHHhcC
Confidence            7888999 9999999999999999999 6999999999999999974  3  789999987633 3455555444

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.92  E-value=3.3e-09  Score=88.67  Aligned_cols=92  Identities=18%  Similarity=0.113  Sum_probs=61.1

Q ss_pred             ccCCCceeeecccCcceeeCCCCc----ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEE------
Q 018726           11 IDSSDFLTVLASEGVEFLLSRQGK----VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV------   80 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~g~----~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i------   80 (351)
                      .-+++...+-.+...+-+++.++-    ++.+++.||+++|+|||+||++|+..+|.+.++.+    .|  +.+      
T Consensus        24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~~--~~~~~y~~t   97 (184)
T TIGR01626        24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----AK--FPPVKYQTT   97 (184)
T ss_pred             hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----cC--CCcccccce
Confidence            344445455455555554444332    56667899999999999999999999999999843    23  566      


Q ss_pred             EEEEecCChhhHHHHHh--------cCCceeeecCh
Q 018726           81 IFISFDHDENGFEEHFK--------CMPWLAVPFDE  108 (351)
Q Consensus        81 v~i~~d~~~~~~~~~~~--------~~~~~~~~~~~  108 (351)
                      +.|+.|++......+++        .+||..+.+|.
T Consensus        98 ~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        98 TIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             EEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            89998876544333332        44555555543

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.92  E-value=8.7e-09  Score=98.03  Aligned_cols=66  Identities=18%  Similarity=0.428  Sum_probs=57.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH-Hc
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF  240 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~  240 (351)
                      +++++||+||++||++|+.+.|.+.++++++..   .++.|+.|++|..                      ...++. .|
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~----------------------~~~la~~~~  418 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG---SGVKVAKFRADGD----------------------QKEFAKQEL  418 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCc----------------------chHHHHhhC
Confidence            578999999999999999999999999999974   5789999988833                      245665 69


Q ss_pred             CcCceeeEEEEC
Q 018726          241 NIKGIPALVLIG  252 (351)
Q Consensus       241 ~i~~~P~~~lid  252 (351)
                      +|.++||++++.
T Consensus       419 ~I~~~PTil~f~  430 (457)
T PLN02309        419 QLGSFPTILLFP  430 (457)
T ss_pred             CCceeeEEEEEe
Confidence            999999999994

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.92  E-value=4.5e-09  Score=88.03  Aligned_cols=73  Identities=22%  Similarity=0.375  Sum_probs=62.3

Q ss_pred             eeCCCCc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhc
Q 018726           28 LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKC   98 (351)
Q Consensus        28 l~~~~g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~   98 (351)
                      +.+.+|+ ++++++ .||+++|+||++||+.|...++.+.++++++.+.+  +.++.|++|.       +.+.+.++.+.
T Consensus         9 l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~~~~~~~~~   86 (171)
T cd02969           9 LPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPENMKAKAKE   86 (171)
T ss_pred             ccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHHHHHHHHHH
Confidence            7788899 999998 99999999999999999999999999999998665  8899999985       34457777765


Q ss_pred             CCce
Q 018726           99 MPWL  102 (351)
Q Consensus        99 ~~~~  102 (351)
                      .+++
T Consensus        87 ~~~~   90 (171)
T cd02969          87 HGYP   90 (171)
T ss_pred             CCCC
Confidence            5543

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.91  E-value=4.1e-09  Score=87.87  Aligned_cols=72  Identities=21%  Similarity=0.164  Sum_probs=59.3

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW  101 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (351)
                      +++ +.+.+|+ +++++++||+++|.||++| |++|...+|.+.++++++.  +  ++++.|+.|.. ....++.+..+.
T Consensus        25 P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f~~~~~~   99 (167)
T PRK00522         25 PDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRFCGAEGL   99 (167)
T ss_pred             CCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHHHHhCCC
Confidence            444 7888999 9999999999999999999 9999999999999999983  3  78999998753 345556555554

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.91  E-value=5.3e-09  Score=84.43  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=59.8

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      .+.+.+|+ +++++++||+++|.|| ++||+.|...++.+.++++++.+.+  ++++.|+.|.. +.+.++.+..+
T Consensus         7 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~-~~~~~~~~~~~   79 (140)
T cd03017           7 TLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSV-ESHAKFAEKYG   79 (140)
T ss_pred             cccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHHHHHHhC
Confidence            37888999 9999999999999999 5899999999999999999998776  88999998754 45666655443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.90  E-value=1.6e-09  Score=81.61  Aligned_cols=67  Identities=25%  Similarity=0.481  Sum_probs=49.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHH
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKK  113 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  113 (351)
                      +++++|.||++||++|+.+.|.+.++++++..     .+.++.+|.++. .+.+.++...+|++.+  +|+...+
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~   83 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-----SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDR   83 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-----ceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEE
Confidence            79999999999999999999999999998732     355566665433 3566667666777776  5554333

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.90  E-value=1.8e-09  Score=84.20  Aligned_cols=81  Identities=7%  Similarity=0.008  Sum_probs=56.8

Q ss_pred             CCCeEEEEEeCCCChh--hh--hhhHHHHHHHHHH--hhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHH
Q 018726           41 GGKTICLFFSANWCRP--CK--TFTPQLVQLYDTL--RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHK  112 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~--C~--~~~p~~~~l~~~~--~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~  112 (351)
                      ..++++++|||+||++  |+  ++.|.+.+++.++  .+.   +.++.|++|.+. .+++.++++.+||+.+  +|+...
T Consensus        26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~---v~~~kVD~d~~~-~La~~~~I~~iPTl~lfk~G~~v~  101 (120)
T cd03065          26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG---IGFGLVDSKKDA-KVAKKLGLDEEDSIYVFKDDEVIE  101 (120)
T ss_pred             CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC---CEEEEEeCCCCH-HHHHHcCCccccEEEEEECCEEEE
Confidence            4569999999999987  99  8899999999997  332   455555555443 5777777777788876  777554


Q ss_pred             HHhhhhhhhHHhhh
Q 018726          113 KLRIRKRREELKAI  126 (351)
Q Consensus       113 ~l~~~~~~~~l~~~  126 (351)
                       +.|....+.+..+
T Consensus       102 -~~G~~~~~~l~~~  114 (120)
T cd03065         102 -YDGEFAADTLVEF  114 (120)
T ss_pred             -eeCCCCHHHHHHH
Confidence             6664444444443

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.89  E-value=3.3e-09  Score=82.44  Aligned_cols=63  Identities=19%  Similarity=0.334  Sum_probs=49.4

Q ss_pred             CCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh------hhHHHHHhcC-Cceeeec
Q 018726           41 GGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE------NGFEEHFKCM-PWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a-------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~------~~~~~~~~~~-~~~~~~~  106 (351)
                      +|++|+|.|||       +||++|+.+.|.+.++++++++.   +.++.|++|...      ..+...++.. ..|++.+
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~   96 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR   96 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence            58999999999       99999999999999999998743   567777776432      3466666666 6777776

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.89  E-value=2.2e-09  Score=84.44  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-------hh---HHHHH----hcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-------NG---FEEHF----KCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-------~~---~~~~~----~~~~~~~~~~  106 (351)
                      .|+.++|+|+++|||+|+.+.|.|.+++++.+     ..+.+|++|.+.       +.   +.+.+    +.+.+|++.+
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~   96 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH   96 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence            67889999999999999999999999999822     469999998543       12   22322    2344788877


Q ss_pred             --ChHHHHHHhh
Q 018726          107 --DETLHKKLRI  116 (351)
Q Consensus       107 --~~~~~~~l~~  116 (351)
                        +|+...++.|
T Consensus        97 ~k~Gk~v~~~~G  108 (122)
T TIGR01295        97 ITDGKQVSVRCG  108 (122)
T ss_pred             EeCCeEEEEEeC
Confidence              7876666555

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.89  E-value=7.2e-09  Score=86.96  Aligned_cols=60  Identities=25%  Similarity=0.316  Sum_probs=52.6

Q ss_pred             eeCCCC----c-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQG----K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g----~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +.+.+|    + +++++++||+++|.|| ++||++|...+|.+.++++++.+.|  ++++.|++|...
T Consensus        10 ~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~   75 (173)
T cd03015          10 ATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHF   75 (173)
T ss_pred             eecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHH
Confidence            455555    6 9999999999999999 8999999999999999999998876  889999988643

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.89  E-value=1.6e-09  Score=84.13  Aligned_cols=71  Identities=11%  Similarity=0.062  Sum_probs=52.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ++++|+|.||++||++|+.+.|.+.++++++.+    +.++-|+++... .+.+.++...+|++.+  +|+...++.+
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~-~l~~~~~v~~vPt~l~fk~G~~v~~~~g   93 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAP-FLVEKLNIKVLPTVILFKNGKTVDRIVG   93 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCH-HHHHHCCCccCCEEEEEECCEEEEEEEC
Confidence            568999999999999999999999999998742    345444444433 3566667777777776  7766555544

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PTZ00102 disulphide isomerase; Provisional

Probab=98.88  E-value=1.2e-08  Score=99.60  Aligned_cols=84  Identities=14%  Similarity=0.310  Sum_probs=64.0

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++...+...--+++.++|.|||+||++|+++.|.+.++++.++. ...++.+..|+++..                   
T Consensus        36 ~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~-~~~~i~~~~vd~~~~-------------------   95 (477)
T PTZ00102         36 VLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE-KKSEIVLASVDATEE-------------------   95 (477)
T ss_pred             EcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh-cCCcEEEEEEECCCC-------------------
Confidence            444444443333578999999999999999999999999988864 234577777766653                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                          ..++++|+|.++||++++...+.+
T Consensus        96 ----~~l~~~~~i~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102         96 ----MELAQEFGVRGYPTIKFFNKGNPV  119 (477)
T ss_pred             ----HHHHHhcCCCcccEEEEEECCceE
Confidence                689999999999999999544333

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.88  E-value=9.5e-09  Score=99.70  Aligned_cols=71  Identities=23%  Similarity=0.507  Sum_probs=60.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.|||+||++|+.+.|.+.++++.+.. .+.++.++.|+++..                       ..++++|+
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~-~~~~v~~~~vd~~~~-----------------------~~l~~~~~   72 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK-KGPPIKLAKVDATEE-----------------------KDLAQKYG   72 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh-cCCceEEEEEECCCc-----------------------HHHHHhCC
Confidence            478999999999999999999999999998875 234577887777753                       68999999


Q ss_pred             cCceeeEEEECCCCce
Q 018726          242 IKGIPALVLIGPDGKT  257 (351)
Q Consensus       242 i~~~P~~~lid~~G~v  257 (351)
                      |.++||++++ ++|+.
T Consensus        73 i~~~Pt~~~~-~~g~~   87 (462)
T TIGR01130        73 VSGYPTLKIF-RNGED   87 (462)
T ss_pred             CccccEEEEE-eCCcc
Confidence            9999999999 56664

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.87  E-value=8.3e-09  Score=84.82  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=59.3

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +.+.+|+ +++++++||+++|.||++ ||+.|+..++.+.+++++++++|  ++++.|+.|. .+.+.++.+..+
T Consensus        15 l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~~~~~   86 (154)
T PRK09437         15 LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFAEKEL   86 (154)
T ss_pred             eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHhC
Confidence            7889999 999999999999999986 67789999999999999998877  8899999884 345666655443

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.87  E-value=1.9e-09  Score=90.28  Aligned_cols=69  Identities=14%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      +++|+|.||++||++|+.+.|.+.++++++..      +.|+.+|.+...+...+.+...|++.+  +|+...++.+
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~------vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG  153 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA------VKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVR  153 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC------eEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEec
Confidence            45999999999999999999999999998742      455666555435566667666777776  7766555544

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00051 thioredoxin; Provisional

Probab=98.86  E-value=2.1e-09  Score=81.22  Aligned_cols=70  Identities=20%  Similarity=0.366  Sum_probs=50.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .+++++|.||++||++|+.+.|.+.++++++.+      +.++.+|.++. .+.+.++...+|++.+  +|+...++.|
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G   89 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK------MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLG   89 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC------cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeC
Confidence            678999999999999999999999999997542      34445554433 4566667667777766  6655444443

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.86  E-value=1e-08  Score=83.74  Aligned_cols=70  Identities=24%  Similarity=0.281  Sum_probs=58.5

Q ss_pred             eeCCCCc-ccccCCCC-CeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~g-k~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +.+.+|+ ++++++.| |+++|.|| ++||+.|+..+|.++++++++++.+  ++++.|+.|.. +...++.+..+
T Consensus        12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~-~~~~~~~~~~~   84 (149)
T cd03018          12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDSP-FSLRAWAEENG   84 (149)
T ss_pred             ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCCH-HHHHHHHHhcC
Confidence            6788899 99999999 99999998 8999999999999999999998766  88999988753 34555555443

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.85  E-value=6.6e-09  Score=84.79  Aligned_cols=42  Identities=26%  Similarity=0.476  Sum_probs=36.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      +++.+|+|||+||++|++++|.+++++++++     +.+++|++|..
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~   91 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQ   91 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCC
Confidence            4456999999999999999999999999873     67889999864

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.84  E-value=9.7e-09  Score=80.95  Aligned_cols=66  Identities=21%  Similarity=0.461  Sum_probs=54.1

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~  100 (351)
                      +.+.+|+ ++++.++||+++|.||++||++|+.++|.+.+++++       ++++.|+.|.+ .+.+.++.+.++
T Consensus         5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~   72 (123)
T cd03011           5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG   72 (123)
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC
Confidence            6788899 999999999999999999999999999999999876       35778888754 445666655443

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.84  E-value=1.1e-08  Score=85.90  Aligned_cols=78  Identities=24%  Similarity=0.480  Sum_probs=56.4

Q ss_pred             Ccce-eeCCCCc-ccc--cCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           24 GVEF-LLSRQGK-VPL--SSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        24 ~~~~-l~~~~g~-~~~--~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      .+++ +.+.+|. .++  +.+ +||+++|+||++||++|+.++|.+.+++++    +  ++++.|+.+.+.+...++++.
T Consensus        40 ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~~~~~~  113 (173)
T TIGR00385        40 VPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNALKFLKE  113 (173)
T ss_pred             CCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHHHHHHH
Confidence            3444 6777886 444  454 799999999999999999999999887652    3  789999987665555566554


Q ss_pred             C--CceeeecC
Q 018726           99 M--PWLAVPFD  107 (351)
Q Consensus        99 ~--~~~~~~~~  107 (351)
                      .  +++.+.++
T Consensus       114 ~~~~f~~v~~D  124 (173)
T TIGR00385       114 LGNPYQAILID  124 (173)
T ss_pred             cCCCCceEEEC
Confidence            4  34444443

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.83  E-value=7.6e-10  Score=63.90  Aligned_cols=29  Identities=34%  Similarity=1.040  Sum_probs=14.3

Q ss_pred             eeeccccCCCce-EEEEcCCCCCCCCcccc
Q 018726          316 YVCDCCKMRGRF-WAFSCDVCNYDLHPKCV  344 (351)
Q Consensus       316 ~~Cd~C~~~~~~-~~~~c~~~~~~~~~~c~  344 (351)
                      +.|+.|++.+.+ |.|+|.+|+|.||..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            479999999888 99999999999999996

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=8.2e-09  Score=82.16  Aligned_cols=119  Identities=17%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             ccchHHhhhccCCCcEe-cCCCcceeecccCCc-EEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 018726          133 GGKLEQLLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR  209 (351)
Q Consensus       133 ~~~~~~~~g~~~pdf~~-~~~g~~~~l~~~~gk-~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~  209 (351)
                      ...++-.+|+.+|||++ +.+|+.++|..+.|+ +||++||..--.| |.+..-.+..-|++++.   ...+|++++.|.
T Consensus        58 sds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk---a~aeV~GlS~D~  134 (211)
T KOG0855|consen   58 SDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK---AGAEVIGLSGDD  134 (211)
T ss_pred             ccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh---cCceEEeeccCc
Confidence            34445567999999999 999999999999885 8888888655444 99999999999999986   788999999985


Q ss_pred             CHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee-------eEEEECCCCc
Q 018726          210 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP-------ALVLIGPDGK  256 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P-------~~~lid~~G~  256 (351)
                      . ...++|..... +.+....|+.+++...+|+...|       ..+++++.|.
T Consensus       135 s-~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~  186 (211)
T KOG0855|consen  135 S-ASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV  186 (211)
T ss_pred             h-HHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence            4 34444444322 33444778889999999986544       5788877653

>TIGR03137 AhpC peroxiredoxin

Probab=98.83  E-value=1.1e-08  Score=86.82  Aligned_cols=65  Identities=29%  Similarity=0.367  Sum_probs=54.1

Q ss_pred             cCcce-eeC-CCCc---ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLS-RQGK---VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~-~~g~---~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..+++ +.+ .+|+   +++++++||+++|.|| ++||+.|...+|.+.++++++.+.|  +++++|+.|...
T Consensus         7 ~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~   77 (187)
T TIGR03137         7 EIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF   77 (187)
T ss_pred             cCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH
Confidence            34455 555 4564   6677899999999999 9999999999999999999998776  889999998643

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.83  E-value=2.1e-08  Score=70.04  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=51.2

Q ss_pred             EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726          166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  245 (351)
Q Consensus       166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  245 (351)
                      -+..|+++||++|+...+.|+++.+.+     +++.+..++++.+                       .+++++||+.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----~~i~~~~id~~~~-----------------------~~l~~~~~i~~v   53 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-----PNISAEMIDAAEF-----------------------PDLADEYGVMSV   53 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-----CceEEEEEEcccC-----------------------HhHHHHcCCccc
Confidence            367899999999999999999886653     4577888877754                       578899999999


Q ss_pred             eeEEEECCCCceEec
Q 018726          246 PALVLIGPDGKTIST  260 (351)
Q Consensus       246 P~~~lid~~G~v~~~  260 (351)
                      |++++   +|++++.
T Consensus        54 Pti~i---~~~~~~~   65 (67)
T cd02973          54 PAIVI---NGKVEFV   65 (67)
T ss_pred             CEEEE---CCEEEEe
Confidence            99865   4666654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PLN02309 5'-adenylylsulfate reductase

Probab=98.82  E-value=6.5e-09  Score=98.89  Aligned_cols=65  Identities=17%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH-HHHhcCCceeeec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE-EHFKCMPWLAVPF  106 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~-~~~~~~~~~~~~~  106 (351)
                      ..+|+++|+|||+||++|+.+.|.+.++++++.+.+  +.+..+++|.+...+. +.+++..+|++.+
T Consensus       363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~~~la~~~~~I~~~PTil~  428 (457)
T PLN02309        363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQKEFAKQELQLGSFPTILL  428 (457)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence            378999999999999999999999999999997654  5666666663333444 3577778888887

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.82  E-value=1.7e-08  Score=81.39  Aligned_cols=70  Identities=26%  Similarity=0.313  Sum_probs=58.8

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      .+.+.+|+ ++++++.||+++|.|| +.||+.|...+|.+.+++++++..+  +.++.|+.|.. ....++.+..
T Consensus         6 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~~-~~~~~~~~~~   77 (140)
T cd02971           6 TLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDSP-FSHKAWAEKE   77 (140)
T ss_pred             eeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCH-HHHHHHHhcc
Confidence            47788899 9999999999999999 6899999999999999999997665  88999998743 3455555544

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PHA02125 thioredoxin-like protein

Probab=98.81  E-value=3.6e-08  Score=70.52  Aligned_cols=57  Identities=32%  Similarity=0.605  Sum_probs=42.9

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.||++||++|+...|.|.++.          +.++-|+.+.                       ..+++++|++.++|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~----------~~~~~vd~~~-----------------------~~~l~~~~~v~~~P   48 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE----------YTYVDVDTDE-----------------------GVELTAKHHIRSLP   48 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh----------heEEeeeCCC-----------------------CHHHHHHcCCceeC
Confidence            68999999999999999886541          2344455443                       36899999999999


Q ss_pred             eEEEECCCCceEec
Q 018726          247 ALVLIGPDGKTIST  260 (351)
Q Consensus       247 ~~~lid~~G~v~~~  260 (351)
                      |++    +|+.+.+
T Consensus        49 T~~----~g~~~~~   58 (75)
T PHA02125         49 TLV----NTSTLDR   58 (75)
T ss_pred             eEE----CCEEEEE
Confidence            986    4665544

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.80  E-value=3.4e-08  Score=75.23  Aligned_cols=65  Identities=20%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .|+++++.|+++||++|..+.+.+.+++++++    +.+.++.|+.|..                       ..+++.||
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~~~~-----------------------~~~~~~~~   63 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDADDF-----------------------GRHLEYFG   63 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEchHhh-----------------------HHHHHHcC
Confidence            37899999999999999999999999999997    5578888777653                       57899999


Q ss_pred             cC--ceeeEEEECC
Q 018726          242 IK--GIPALVLIGP  253 (351)
Q Consensus       242 i~--~~P~~~lid~  253 (351)
                      +.  ++|++++++.
T Consensus        64 i~~~~~P~~~~~~~   77 (103)
T cd02982          64 LKEEDLPVIAIINL   77 (103)
T ss_pred             CChhhCCEEEEEec
Confidence            99  9999999965

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.80  E-value=7.2e-08  Score=75.00  Aligned_cols=77  Identities=14%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      +.-++|+++|+|+++||++|+.+...+   .++.+.++    .++.++.++++...                     ...
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~----~~~v~~~~d~~~~e---------------------~~~   67 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR----ENFIFWQCDIDSSE---------------------GQR   67 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH----hCEEEEEecCCCcc---------------------HHH
Confidence            344589999999999999999987633   34444444    44555555444321                     467


Q ss_pred             HHHHcCcCceeeEEEECC-CCceEec
Q 018726          236 LCRIFNIKGIPALVLIGP-DGKTIST  260 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~-~G~v~~~  260 (351)
                      +++.|++.++|+++++|+ +|+++.+
T Consensus        68 ~~~~~~~~~~P~~~~i~~~~g~~l~~   93 (114)
T cd02958          68 FLQSYKVDKYPHIAIIDPRTGEVLKV   93 (114)
T ss_pred             HHHHhCccCCCeEEEEeCccCcEeEE
Confidence            899999999999999999 8999887

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.78  E-value=2.7e-08  Score=71.37  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=47.2

Q ss_pred             EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceee
Q 018726          168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  247 (351)
Q Consensus       168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  247 (351)
                      |.||++||++|+...|.++++.+++.    ..+.++-|  |.                        ...+..|++.++|+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~----~~~~~~~v--~~------------------------~~~a~~~~v~~vPt   52 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELG----IDAEFEKV--TD------------------------MNEILEAGVTATPG   52 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcC----CCeEEEEe--CC------------------------HHHHHHcCCCcCCE
Confidence            78999999999999999999999886    44555444  42                        12256799999999


Q ss_pred             EEEECCCCceEec
Q 018726          248 LVLIGPDGKTIST  260 (351)
Q Consensus       248 ~~lid~~G~v~~~  260 (351)
                      +++   +|+++..
T Consensus        53 i~i---~G~~~~~   62 (76)
T TIGR00412        53 VAV---DGELVIM   62 (76)
T ss_pred             EEE---CCEEEEE
Confidence            988   8887733

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.78  E-value=1.1e-08  Score=85.13  Aligned_cols=56  Identities=23%  Similarity=0.435  Sum_probs=47.0

Q ss_pred             cceeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        25 ~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +..+...+|+ +++++++    +|.||++||++|++++|.+.+++++++     +.++.|++|.+.
T Consensus        55 ~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~  111 (181)
T PRK13728         55 PRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQG  111 (181)
T ss_pred             CCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCC
Confidence            3334456899 9999987    777999999999999999999999973     789999998653

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.76  E-value=1.3e-08  Score=76.59  Aligned_cols=64  Identities=20%  Similarity=0.429  Sum_probs=48.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~  106 (351)
                      .++++++|.||++||++|+.+.|.+.++++.++..   -.+.++.+|.+. ..+.+.+....+|++.+
T Consensus        13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02961          13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD---GKVVVAKVDCTANNDLCSEYGVRGYPTIKL   77 (101)
T ss_pred             hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC---CceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence            35669999999999999999999999999998522   125555555543 35777777788888877

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.76  E-value=1.3e-08  Score=79.06  Aligned_cols=61  Identities=20%  Similarity=0.305  Sum_probs=47.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      .++.++|.||++||++|+.+.|.+.++++.+ +.   +.+..+++|... ...+.++....|++.+
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~-~l~~~~~v~~vPt~~i   81 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDK-EKAEKYGVERVPTTIF   81 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCH-HHHHHcCCCcCCEEEE
Confidence            4567899999999999999999999999875 33   677777777554 4556667666777776

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.74  E-value=7.4e-09  Score=90.20  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=59.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec-ChHHHHHHh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF-DETLHKKLR  115 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~  115 (351)
                      ....|+|+||||||+||+++.|.|.++-.++++.|  ..|...++|+++- .++..+...+||++.| .|.....+.
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig--~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYR  116 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG--LPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYR  116 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcC--CceeecccccccchhhHhhhccCCCceEEEecCCeeeecC
Confidence            34689999999999999999999999999999988  5577788888754 4777789999999988 444333333

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.6e-07  Score=74.06  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=93.2

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      ..+|+++|+|++ +.+.+.+++.++.||..++..+. -.-+.|......+++.+.++     .+..|+.||+| -+-+..
T Consensus        18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-----~~~~Vl~IS~D-LPFAq~   91 (158)
T COG2077          18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-----GNTVVLCISMD-LPFAQK   91 (158)
T ss_pred             CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc-----CCcEEEEEeCC-ChhHHh
Confidence            457999999999 89999999999999876666554 45666999999999888877     45889999998 456777


Q ss_pred             hhhccCCceeeccCch-hhHHHHHHcCcC--ce-------eeEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDR-ARQDLCRIFNIK--GI-------PALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d-~~~~~~~~~~i~--~~-------P~~~lid~~G~v~~~~  261 (351)
                      ++....+.-++....| ++..+.+.||+.  ..       .+++++|.+|+|++..
T Consensus        92 RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e  147 (158)
T COG2077          92 RFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE  147 (158)
T ss_pred             hhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence            7777777655544444 677899999962  33       4799999999999883

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.73  E-value=4.8e-08  Score=72.18  Aligned_cols=71  Identities=18%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      .++.+.+.+..|+++||++|+...+.++++.+++     +++.+..++.+..                       .+++.
T Consensus         8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-----~~i~~~~vd~~~~-----------------------~e~a~   59 (89)
T cd03026           8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN-----PNIEHEMIDGALF-----------------------QDEVE   59 (89)
T ss_pred             HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-----CCceEEEEEhHhC-----------------------HHHHH
Confidence            4567788999999999999999999999998766     4577777777753                       68899


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|+|.++|++++   +|+++.+
T Consensus        60 ~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          60 ERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             HcCCccCCEEEE---CCEEEEe
Confidence            999999999975   6888775

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02740 TraF-like TraF-like protein

Probab=98.73  E-value=1.5e-08  Score=90.82  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=55.1

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh----------hhHHHHHhcCCceee
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE----------NGFEEHFKCMPWLAV  104 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~----------~~~~~~~~~~~~~~~  104 (351)
                      ..++++.|++++|+||++||++|+.++|.+.++++++.     +.|++|++|.+.          ....+.+++..+|++
T Consensus       159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl  233 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAV  233 (271)
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeE
Confidence            66778899999999999999999999999999999873     679999998742          234555666667777


Q ss_pred             ec
Q 018726          105 PF  106 (351)
Q Consensus       105 ~~  106 (351)
                      .+
T Consensus       234 ~L  235 (271)
T TIGR02740       234 FL  235 (271)
T ss_pred             EE
Confidence            76

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=8.8e-08  Score=76.73  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=82.8

Q ss_pred             CCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726          144 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD  215 (351)
Q Consensus       144 ~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~  215 (351)
                      .=+|++ +.+|+.++++.++||++|+.--|+.|+.-...-..|+.|+++|++   .+++|++.++..       ...++.
T Consensus        14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPCNQFg~QEp~~n~Ei~   90 (171)
T KOG1651|consen   14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPCNQFGNQEPGSNEEIL   90 (171)
T ss_pred             eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEeccccccCcCCCCcHHHH
Confidence            347888 999999999999999999999999999988777799999999987   899999999852       335666


Q ss_pred             hhhccCCceeecc------CchhhHHHHHHc----------CcCceeeEEEECCCCceEec
Q 018726          216 LNHSIMPWLAIPY------EDRARQDLCRIF----------NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       216 ~~~~~~~~~~~~~------~~d~~~~~~~~~----------~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+.....-..+|+      ..+....+.+.+          .|..-=+-+|+|++|+|+.|
T Consensus        91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R  151 (171)
T KOG1651|consen   91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR  151 (171)
T ss_pred             HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence            6665222122222      111111222211          23444578999999999999

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=2e-08  Score=95.00  Aligned_cols=64  Identities=19%  Similarity=0.450  Sum_probs=55.0

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        43 k~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~  106 (351)
                      |..+|.||++|||+|+++.|.++++++.+.+..+.+.|..|++-.+++ .+++.+++..+|++.|
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry  122 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY  122 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence            567999999999999999999999999999887556666666655443 5999999999999999

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.70  E-value=5.3e-08  Score=79.29  Aligned_cols=69  Identities=22%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             eeCCCCc-ccccCCC-CCeEEEE-EeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCG-GKTICLF-FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~-gk~v~v~-F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      +.+.+|+ ++++++. +|+++|. ||++||++|+..+|.+.++++++++.|  +.++.|+.|.... ..++.+..
T Consensus         7 l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~~   78 (149)
T cd02970           7 LPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKGK   78 (149)
T ss_pred             ccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHhc
Confidence            7788999 9998864 4555554 569999999999999999999998776  8899999886543 33444433

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.68  E-value=3.4e-08  Score=71.83  Aligned_cols=61  Identities=13%  Similarity=0.223  Sum_probs=47.3

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      .+..||++||++|+.+.|.++++++.++..   +.++.|+++.+.+. .+.++...+|++.++|.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~~~-~~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENPQK-AMEYGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCHHH-HHHcCCccCCEEEECCE
Confidence            467899999999999999999999988644   66777777655543 44466667788888664

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.68  E-value=5e-08  Score=85.35  Aligned_cols=88  Identities=19%  Similarity=0.332  Sum_probs=67.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHHHHh--cCCceeeecChHHHH-HHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEHFK--CMPWLAVPFDETLHK-KLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~~~~--~~~~~~~~~~~~~~~-~l~~  116 (351)
                      .+..|+|.|||+||+.+++++|.+++.+.+++...+.-.+|..++|++.+. ++..+.  .+|+..+.++|.... .+.|
T Consensus        12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg   91 (375)
T KOG0912|consen   12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRG   91 (375)
T ss_pred             cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhcc
Confidence            367999999999999999999999999999988866567999999998664 555555  455545555888665 6667


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      ...++.+...++
T Consensus        92 ~RsVeaL~efi~  103 (375)
T KOG0912|consen   92 QRSVEALIEFIE  103 (375)
T ss_pred             chhHHHHHHHHH
Confidence            666666655544

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.67  E-value=7.7e-08  Score=74.17  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=46.9

Q ss_pred             CCcEEEEEEec--CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          162 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       162 ~gk~vll~F~a--~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      +.+.+||.|+|  +||+   + +|...+|+.++.. ....+.|.-|.++..                  ....+..++++
T Consensus        17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~-aa~~v~lakVd~~d~------------------~~~~~~~L~~~   73 (116)
T cd03007          17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSAS-ATDDLLVAEVGIKDY------------------GEKLNMELGER   73 (116)
T ss_pred             cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHh-hcCceEEEEEecccc------------------cchhhHHHHHH
Confidence            46789999999  6666   3 3555555555532 123466666766531                  00014789999


Q ss_pred             cCcC--ceeeEEEECCCCc
Q 018726          240 FNIK--GIPALVLIGPDGK  256 (351)
Q Consensus       240 ~~i~--~~P~~~lid~~G~  256 (351)
                      |+|+  ++||+.++ ++|.
T Consensus        74 y~I~~~gyPTl~lF-~~g~   91 (116)
T cd03007          74 YKLDKESYPVIYLF-HGGD   91 (116)
T ss_pred             hCCCcCCCCEEEEE-eCCC
Confidence            9999  99999999 5553

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.66  E-value=1.6e-08  Score=88.19  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=57.7

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ...++|.|||+||++|++..|.+.++--++++   -+.-|-.-.+|...                     -..++..|||
T Consensus        43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~---------------------f~aiAnefgi   98 (468)
T KOG4277|consen   43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATR---------------------FPAIANEFGI   98 (468)
T ss_pred             CCeEEEEeechhhhhcccccchhHHhCcchhh---cCCceeeccccccc---------------------chhhHhhhcc
Confidence            35899999999999999999999999888875   44444444455432                     3588999999


Q ss_pred             CceeeEEEECCCCceEecccc
Q 018726          243 KGIPALVLIGPDGKTISTNGK  263 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~~~~  263 (351)
                      +++||+.++-.+..+-+|++|
T Consensus        99 qGYPTIk~~kgd~a~dYRG~R  119 (468)
T KOG4277|consen   99 QGYPTIKFFKGDHAIDYRGGR  119 (468)
T ss_pred             CCCceEEEecCCeeeecCCCc
Confidence            999999999333344455443

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.63  E-value=1.9e-07  Score=80.76  Aligned_cols=86  Identities=24%  Similarity=0.350  Sum_probs=67.9

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .+.++++++-|++|+.+.|+.|..+.|.|..+.++|+      +.|+.||+|...           ...+|.... +..+
T Consensus       114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~-----------~~~fp~~~~-~~g~  175 (215)
T PF13728_consen  114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG------FSVIPVSLDGRP-----------IPSFPNPRP-DPGQ  175 (215)
T ss_pred             HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC------CEEEEEecCCCC-----------CcCCCCCCC-CHHH
Confidence            4556678899999999999999999999999999875      689999999642           112222211 5778


Q ss_pred             HHHcCcCceeeEEEECCCCceEec
Q 018726          237 CRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       237 ~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++++|+..+|+++|+++++.....
T Consensus       176 ~~~l~v~~~Pal~Lv~~~~~~~~p  199 (215)
T PF13728_consen  176 AKRLGVKVTPALFLVNPNTKKWYP  199 (215)
T ss_pred             HHHcCCCcCCEEEEEECCCCeEEE
Confidence            999999999999999998854444

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=9.5e-08  Score=90.45  Aligned_cols=70  Identities=27%  Similarity=0.546  Sum_probs=57.1

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ++.++|.||++||++|++..|.+.++...++    ..+.+..|..+.                       ...+++.|+|
T Consensus        47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~----~~~~~~~vd~~~-----------------------~~~~~~~y~i   99 (383)
T KOG0191|consen   47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALK----GKVKIGAVDCDE-----------------------HKDLCEKYGI   99 (383)
T ss_pred             CCceEEEEECCCCcchhhhchHHHHHHHHhc----CceEEEEeCchh-----------------------hHHHHHhcCC
Confidence            5799999999999999999999999999887    345555555554                       4799999999


Q ss_pred             CceeeEEEECCCCceEe
Q 018726          243 KGIPALVLIGPDGKTIS  259 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~  259 (351)
                      .++||+.++.+..+++.
T Consensus       100 ~gfPtl~~f~~~~~~~~  116 (383)
T KOG0191|consen  100 QGFPTLKVFRPGKKPID  116 (383)
T ss_pred             ccCcEEEEEcCCCceee
Confidence            99999999965523443

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.62  E-value=1.5e-07  Score=82.46  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=62.6

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ...|+|.|+|.||+.++...|.+.+.++.+++ ..++-.+|+-++|.+.                     ...++.+|.|
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~-e~P~~kvvwg~VDcd~---------------------e~~ia~ky~I   70 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQ-EFPEGKVVWGKVDCDK---------------------EDDIADKYHI   70 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHH-hCCCcceEEEEcccch---------------------hhHHhhhhcc
Confidence            46899999999999999999999999999986 3344566777777654                     5789999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      ..+||+-++ .+|.+..+
T Consensus        71 ~KyPTlKvf-rnG~~~~r   87 (375)
T KOG0912|consen   71 NKYPTLKVF-RNGEMMKR   87 (375)
T ss_pred             ccCceeeee-eccchhhh
Confidence            999999999 78877665

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.62  E-value=2.1e-08  Score=85.11  Aligned_cols=68  Identities=7%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ++++|+|.||++||++|+.+.|.|.+|++++..      +.|+.+|.+..  ...+.....|++.+  +|+...++.|
T Consensus       101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~------vkFvkI~ad~~--~~~~~i~~lPTlliyk~G~~v~~ivG  170 (192)
T cd02988         101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD------TKFVKIISTQC--IPNYPDKNLPTILVYRNGDIVKQFIG  170 (192)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC------CEEEEEEhHHh--HhhCCCCCCCEEEEEECCEEEEEEeC
Confidence            356999999999999999999999999999752      45666665442  34455555566665  8876666655

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.60  E-value=1.6e-07  Score=81.20  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=60.7

Q ss_pred             cccCcce-eeCCCCc-ccccCCCCCeE-EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHH
Q 018726           21 ASEGVEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEH   95 (351)
Q Consensus        21 ~~~~~~~-l~~~~g~-~~~~~~~gk~v-~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~   95 (351)
                      ....+++ +.+.+|+ ..++++.||++ |+.||++||+.|...++.+.++++++.+.|  ++++.||+|....  .+.++
T Consensus         5 Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~   82 (215)
T PRK13599          5 GEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEW   82 (215)
T ss_pred             CCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHh
Confidence            3444566 7788999 77788899975 679999999999999999999999998887  8999999997532  35555


Q ss_pred             Hh
Q 018726           96 FK   97 (351)
Q Consensus        96 ~~   97 (351)
                      ++
T Consensus        83 i~   84 (215)
T PRK13599         83 IK   84 (215)
T ss_pred             HH
Confidence            44

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.60  E-value=1.8e-07  Score=80.31  Aligned_cols=63  Identities=24%  Similarity=0.374  Sum_probs=52.8

Q ss_pred             cce-eeCCCCcccccCCCCCeEEE-EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           25 VEF-LLSRQGKVPLSSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        25 ~~~-l~~~~g~~~~~~~~gk~v~v-~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +++ +.+..|.+++++++||+++| .||++||+.|...++.+.++++++++.|  ++++.|++|...
T Consensus         9 P~F~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~   73 (202)
T PRK13190          9 PDFTVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIY   73 (202)
T ss_pred             CCcEEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHH
Confidence            344 45555668899999997766 6899999999999999999999999877  889999998653

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.58  E-value=1.9e-07  Score=78.91  Aligned_cols=53  Identities=25%  Similarity=0.366  Sum_probs=48.7

Q ss_pred             ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ++++++.||+++|.|| ++||+.|...++.+.++++++.+.|  ++++.||.|...
T Consensus        24 v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~   77 (187)
T PRK10382         24 VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHF   77 (187)
T ss_pred             EEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHH
Confidence            7888999999999999 9999999999999999999998877  889999988643

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.58  E-value=1.8e-07  Score=73.53  Aligned_cols=69  Identities=13%  Similarity=0.090  Sum_probs=44.5

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhhHHH-------HHhcCCceee
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEE-------HFKCMPWLAV  104 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~-------~~~~~~~~~~  104 (351)
                      +..+..+||+|+|+|+|+||++|+.|.+..   .++.+.+++.   +.++.++++...+....       .++..++|++
T Consensus         8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~   84 (124)
T cd02955           8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN   84 (124)
T ss_pred             HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            334456899999999999999999998733   3566665543   44554444432221111       2355678888


Q ss_pred             ec
Q 018726          105 PF  106 (351)
Q Consensus       105 ~~  106 (351)
                      .+
T Consensus        85 vf   86 (124)
T cd02955          85 VF   86 (124)
T ss_pred             EE
Confidence            88

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.56  E-value=1.1e-07  Score=68.23  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=44.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHHH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH  111 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~  111 (351)
                      -|.||++||++|+.+.|.++++++++...     +.++++|. .+. ...++.+..|++.++|+..
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-----~~~~~v~~-~~~-a~~~~v~~vPti~i~G~~~   60 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGID-----AEFEKVTD-MNE-ILEAGVTATPGVAVDGELV   60 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCC-----eEEEEeCC-HHH-HHHcCCCcCCEEEECCEEE
Confidence            48899999999999999999999987543     55566663 222 3346777888988877543

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.56  E-value=3.1e-08  Score=56.97  Aligned_cols=29  Identities=28%  Similarity=0.890  Sum_probs=27.1

Q ss_pred             eeeccccCCCceE-EEEcCCCCCCCCcccc
Q 018726          316 YVCDCCKMRGRFW-AFSCDVCNYDLHPKCV  344 (351)
Q Consensus       316 ~~Cd~C~~~~~~~-~~~c~~~~~~~~~~c~  344 (351)
                      ++|+.|.+...|. .|+|++|+|.||+.||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            5799999998888 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.55  E-value=1e-07  Score=70.28  Aligned_cols=64  Identities=22%  Similarity=0.493  Sum_probs=47.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DET  109 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~  109 (351)
                      ++++++|.||++||++|+.+.+.+.++++. .. +  +.++.++++.+. .+.+.++...+|++.+  +|+
T Consensus         9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~--~~~~~i~~~~~~-~~~~~~~v~~~P~~~~~~~g~   74 (93)
T cd02947           9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-K--VKFVKVDVDENP-ELAEEYGVRSIPTFLFFKNGK   74 (93)
T ss_pred             cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-C--ceEEEEECCCCh-hHHHhcCcccccEEEEEECCE
Confidence            348999999999999999999999999987 22 2  556666655433 4556667677788776  554

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.55  E-value=5e-08  Score=75.51  Aligned_cols=84  Identities=24%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-------------------hHHHHHhcCC
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-------------------GFEEHFKCMP  100 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-------------------~~~~~~~~~~  100 (351)
                      .+||++++.||++||++|+.+.+.+.+..+-......++.++.++++++..                   .+.+.+++..
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            378999999999999999999999987555322111126788888876541                   2555667777


Q ss_pred             ceeeec-C--hHHHHHHhhhhhhhHH
Q 018726          101 WLAVPF-D--ETLHKKLRIRKRREEL  123 (351)
Q Consensus       101 ~~~~~~-~--~~~~~~l~~~~~~~~l  123 (351)
                      +|++.+ +  |+....+.|.-..+++
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l  108 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEEL  108 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHH
Confidence            889888 4  5444444554443433

...

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.51  E-value=2.7e-07  Score=73.04  Aligned_cols=74  Identities=19%  Similarity=0.369  Sum_probs=47.2

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      +.+..+..++.|..+|||.|+...|.|.++++..     +++.+-.+..|.+                       .++..
T Consensus        37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~rd~~-----------------------~el~~   88 (129)
T PF14595_consen   37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILRDEN-----------------------KELMD   88 (129)
T ss_dssp             HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-HHHH-----------------------HHHTT
T ss_pred             HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEecCC-----------------------hhHHH
Confidence            3445678899999999999999999999999875     4566666666643                       23333


Q ss_pred             H---cCcCceeeEEEECCCCceEec
Q 018726          239 I---FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~---~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +   .|...+|+++++|.+|+++.+
T Consensus        89 ~~lt~g~~~IP~~I~~d~~~~~lg~  113 (129)
T PF14595_consen   89 QYLTNGGRSIPTFIFLDKDGKELGR  113 (129)
T ss_dssp             TTTT-SS--SSEEEEE-TT--EEEE
T ss_pred             HHHhCCCeecCEEEEEcCCCCEeEE
Confidence            3   467899999999999999987

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.51  E-value=2.1e-07  Score=70.79  Aligned_cols=60  Identities=13%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcC--Cceeeec
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCM--PWLAVPF  106 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~--~~~~~~~  106 (351)
                      |+++++.|+++||++|..+.|.+.+++++++++     +.++.+|.++. .+.+.++..  .+|++.+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~   74 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADDFGRHLEYFGLKEEDLPVIAI   74 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence            789999999999999999999999999999865     44555554432 466666665  6788877

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.51  E-value=4.4e-07  Score=78.62  Aligned_cols=66  Identities=20%  Similarity=0.337  Sum_probs=54.0

Q ss_pred             cCcce-eeCCCCcccc-cCCCCCeEEE-EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh
Q 018726           23 EGVEF-LLSRQGKVPL-SSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (351)
Q Consensus        23 ~~~~~-l~~~~g~~~~-~~~~gk~v~v-~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~   90 (351)
                      ..+++ +.+.+|++.+ +.++||+++| .||++||+.|...++.|.++++++++.|  ++++.||+|....
T Consensus        12 ~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~   80 (215)
T PRK13191         12 KFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNIS   80 (215)
T ss_pred             cCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence            34455 6777888555 4479997665 8899999999999999999999999887  8999999997543

>smart00594 UAS UAS domain

Probab=98.51  E-value=6.5e-07  Score=70.47  Aligned_cols=74  Identities=15%  Similarity=0.315  Sum_probs=54.3

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  233 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~  233 (351)
                      ..+.-.+|.++|+|+++||++|..+...+   .++.+.++    .++.++.+++....                     .
T Consensus        21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~----~~fv~~~~dv~~~e---------------------g   75 (122)
T smart00594       21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR----ENFIFWQVDVDTSE---------------------G   75 (122)
T ss_pred             HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH----cCEEEEEecCCChh---------------------H
Confidence            34444689999999999999999988643   23444443    44555555544332                     4


Q ss_pred             HHHHHHcCcCceeeEEEECCCC
Q 018726          234 QDLCRIFNIKGIPALVLIGPDG  255 (351)
Q Consensus       234 ~~~~~~~~i~~~P~~~lid~~G  255 (351)
                      ..+++.|++.++|+++++|++|
T Consensus        76 ~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       76 QRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             HHHHHhcCcCCCCEEEEEecCC
Confidence            6899999999999999999997

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.51  E-value=2.9e-07  Score=67.05  Aligned_cols=65  Identities=22%  Similarity=0.522  Sum_probs=42.3

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      .+..+||+++|+|+++||++|+.+...+   .++.+.+.++     ++.+.+|.+...-...+....+|++.+
T Consensus        12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~-----fv~v~vd~~~~~~~~~~~~~~~P~~~~   79 (82)
T PF13899_consen   12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN-----FVLVKVDVDDEDPNAQFDRQGYPTFFF   79 (82)
T ss_dssp             HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC-----SEEEEEETTTHHHHHHHHHCSSSEEEE
T ss_pred             HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC-----EEEEEEEcCCCChhHHhCCccCCEEEE
Confidence            3345799999999999999999998877   4555545544     555555554332211222244677765

...

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=98.49  E-value=9.2e-07  Score=74.13  Aligned_cols=75  Identities=29%  Similarity=0.457  Sum_probs=63.6

Q ss_pred             ceeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCC
Q 018726           26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMP  100 (351)
Q Consensus        26 ~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~  100 (351)
                      ..|.+.+|+ +++++++||+++|.|..+.|+. |..++..+.++.+++...+.++++++|++|..+   +.++++.+.++
T Consensus        35 f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~  114 (174)
T PF02630_consen   35 FTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG  114 (174)
T ss_dssp             -EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred             cEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            349999999 9999999999999999999986 999999999999999887777999999999643   34777766554

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.49  E-value=5e-07  Score=77.77  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             eeCCCCcccccCCCC-CeE-EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGKVPLSSCGG-KTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~~~~~~~~g-k~v-~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +.+.+|.++++++.| |++ ++.||++||+.|...++.+.++++++++.|  ++++.|++|...
T Consensus        10 ~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~   71 (203)
T cd03016          10 ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVE   71 (203)
T ss_pred             EecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHH
Confidence            556667788888888 654 568999999999999999999999999887  899999999643

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2e-06  Score=69.32  Aligned_cols=118  Identities=19%  Similarity=0.326  Sum_probs=94.3

Q ss_pred             hhccCCCcEecCCCcceeecccCCcEEEEEEe--cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHHH
Q 018726          140 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFD  215 (351)
Q Consensus       140 ~g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~--a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~  215 (351)
                      +|+.+|+|+.+.+..++.+.++-|.-+.|.|.  +..-|.|..++..+.+++-+|.+   +++..+++|+|.  +...|.
T Consensus         8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K---RnvKlialS~d~vesH~~Wi   84 (224)
T KOG0854|consen    8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK---RNVKLIALSVDDVESHKDWI   84 (224)
T ss_pred             ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh---cCceEEEeehhhHHHHHHHH
Confidence            68999999997777789999999987777775  45667799999999999999987   999999999995  334454


Q ss_pred             hhhcc----CC-ceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEec
Q 018726          216 LNHSI----MP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       216 ~~~~~----~~-~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~  260 (351)
                      +-++.    .+ -+.+|...|+.++++-.|++-            ....++++|++.+++-.
T Consensus        85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs  146 (224)
T KOG0854|consen   85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS  146 (224)
T ss_pred             HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence            44432    22 356788889999999998762            35689999999998754

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.49  E-value=2.3e-07  Score=67.57  Aligned_cols=65  Identities=32%  Similarity=0.744  Sum_probs=44.8

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      -+||+++|+|+++||++|+.+...+   .++.+.+.    .++..+.|..+...                      ... 
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~----~~fv~v~vd~~~~~----------------------~~~-   67 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN----KNFVLVKVDVDDED----------------------PNA-   67 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH----HCSEEEEEETTTHH----------------------HHH-
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH----CCEEEEEEEcCCCC----------------------hhH-
Confidence            3589999999999999999998776   34444344    45667777665431                      111 


Q ss_pred             HHcCcCceeeEEEECC
Q 018726          238 RIFNIKGIPALVLIGP  253 (351)
Q Consensus       238 ~~~~i~~~P~~~lid~  253 (351)
                       .+...++|+++|+||
T Consensus        68 -~~~~~~~P~~~~ldp   82 (82)
T PF13899_consen   68 -QFDRQGYPTFFFLDP   82 (82)
T ss_dssp             -HHHHCSSSEEEEEET
T ss_pred             -HhCCccCCEEEEeCC
Confidence             111266999999975

...

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.48  E-value=8e-07  Score=78.23  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=68.1

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .+..+++++-|++||.+.|+.|.++.|.|+.+.++|+      +.|+.||+|...           ...+|... .+..+
T Consensus       144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~-----------~p~fp~~~-~d~gq  205 (256)
T TIGR02739       144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG------ISVIPISVDGTL-----------IPGLPNSR-SDSGQ  205 (256)
T ss_pred             HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCcc-CChHH
Confidence            4556677899999999999999999999999999885      689999999642           11233222 15678


Q ss_pred             HHHcCcCceeeEEEECCCCceEec
Q 018726          237 CRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       237 ~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++++|+..+|+++|++++.+....
T Consensus       206 a~~l~v~~~Pal~Lv~~~t~~~~p  229 (256)
T TIGR02739       206 AQHLGVKYFPALYLVNPKSQKMSP  229 (256)
T ss_pred             HHhcCCccCceEEEEECCCCcEEE
Confidence            999999999999999998655444

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.44  E-value=1.2e-06  Score=76.61  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=66.7

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .+.++.+++-|++||.+.|+.|.++.|.|+.+.++|+      +.|+.||+|...           ...+|... .+...
T Consensus       137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~-----------~p~fp~~~-~d~gq  198 (248)
T PRK13703        137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVI-----------NPLLPDSR-TDQGQ  198 (248)
T ss_pred             HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCCc-cChhH
Confidence            3556677899999999999999999999999999886      689999999642           11233221 24566


Q ss_pred             HHHcCcCceeeEEEECCCCceEec
Q 018726          237 CRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       237 ~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+..+|+++|++++.+-...
T Consensus       199 a~~l~v~~~PAl~Lv~~~t~~~~p  222 (248)
T PRK13703        199 AQRLGVKYFPALMLVDPKSGSVRP  222 (248)
T ss_pred             HHhcCCcccceEEEEECCCCcEEE
Confidence            789999999999999998644433

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.43  E-value=7e-07  Score=76.63  Aligned_cols=59  Identities=27%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             CCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh
Q 018726           30 SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~   90 (351)
                      +.+|+ +++++++||+++|.||+ +||+.|...++.+.++++++.+.|  ++++.|++|....
T Consensus        23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~   83 (199)
T PTZ00253         23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYA   83 (199)
T ss_pred             CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHH
Confidence            45667 99999999999999996 889999999999999999999887  8999999997643

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.42  E-value=2.5e-07  Score=91.65  Aligned_cols=84  Identities=15%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhcCCceeeec---C
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKCMPWLAVPF---D  107 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~~~~~~~~~---~  107 (351)
                      .+..+||+|+|+|||+||++|+.+.+..   .++.+.+++    +.++.++++.+.   ..+.+.++...+|++.+   +
T Consensus       469 ~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~  544 (571)
T PRK00293        469 EAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQ  544 (571)
T ss_pred             HHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCC
Confidence            3445799999999999999999998875   667776642    556666665432   24666677788888887   3


Q ss_pred             hHH--HHHHhhhhhhhHHh
Q 018726          108 ETL--HKKLRIRKRREELK  124 (351)
Q Consensus       108 ~~~--~~~l~~~~~~~~l~  124 (351)
                      |+.  ..++.+....+++.
T Consensus       545 G~~i~~~r~~G~~~~~~f~  563 (571)
T PRK00293        545 GQEIPDARVTGFMDAAAFA  563 (571)
T ss_pred             CCCcccccccCCCCHHHHH
Confidence            544  23455544444443

>PHA02125 thioredoxin-like protein

Probab=98.41  E-value=3e-07  Score=65.76  Aligned_cols=49  Identities=22%  Similarity=0.515  Sum_probs=37.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeee
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVP  105 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~  105 (351)
                      ++.||++||++|+.+.|.+.++.           +.++++|.++ ..+.+.++...+|++.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-----------~~~~~vd~~~~~~l~~~~~v~~~PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-----------YTYVDVDTDEGVELTAKHHIRSLPTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-----------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence            78999999999999999986541           2355666543 3467778888888887

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.40  E-value=3.4e-07  Score=71.98  Aligned_cols=77  Identities=5%  Similarity=0.078  Sum_probs=48.0

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec---Ch
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF---DE  108 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~---~~  108 (351)
                      +.....+||+|+|+|+++||++|+.+...+   .++.+.+++.   +..+-+..|.+.....  ..+..+|++.|   +|
T Consensus        16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~~~~--~~g~~vPtivFld~~g   90 (130)
T cd02960          16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDKNLS--PDGQYVPRIMFVDPSL   90 (130)
T ss_pred             HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCCCcC--ccCcccCeEEEECCCC
Confidence            344456899999999999999999998865   2344444333   4333344332221111  13356788888   66


Q ss_pred             HHHHHHhh
Q 018726          109 TLHKKLRI  116 (351)
Q Consensus       109 ~~~~~l~~  116 (351)
                      +...++.|
T Consensus        91 ~vi~~i~G   98 (130)
T cd02960          91 TVRADITG   98 (130)
T ss_pred             CCcccccc
Confidence            66666666

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.40  E-value=3.7e-07  Score=70.41  Aligned_cols=81  Identities=7%  Similarity=0.046  Sum_probs=48.1

Q ss_pred             CCCeEEEEEeC--CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC------hhhHHHHHhcC--Cceeeec--Ch
Q 018726           41 GGKTICLFFSA--NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD------ENGFEEHFKCM--PWLAVPF--DE  108 (351)
Q Consensus        41 ~gk~v~v~F~a--~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~------~~~~~~~~~~~--~~~~~~~--~~  108 (351)
                      +.+.+||.|||  |||+   . .|++.+|+.++.....  .|++..+|++      +..+++.+++.  ++|++.+  +|
T Consensus        17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~--~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g   90 (116)
T cd03007          17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATD--DLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG   90 (116)
T ss_pred             cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcC--ceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence            67899999999  7777   2 2445555544433221  2555555552      23577777776  7888876  55


Q ss_pred             H--HHHHHhhh-hhhhHHhhhc
Q 018726          109 T--LHKKLRIR-KRREELKAID  127 (351)
Q Consensus       109 ~--~~~~l~~~-~~~~~l~~~~  127 (351)
                      +  ....+.+. ...+.|..++
T Consensus        91 ~~~~~~~Y~G~~r~~~~lv~~v  112 (116)
T cd03007          91 DFENPVPYSGADVTVDALQRFL  112 (116)
T ss_pred             CcCCCccCCCCcccHHHHHHHH
Confidence            3  23455553 4555554443

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.40  E-value=1.9e-06  Score=65.65  Aligned_cols=60  Identities=22%  Similarity=0.342  Sum_probs=55.4

Q ss_pred             CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 018726          146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR  209 (351)
Q Consensus       146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~  209 (351)
                      +|++ +.+|+.++++.++||++||.-.|+.|+.-. ....|++|+++|++   .+++|++++++.
T Consensus         3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~---~gl~ILaFPcnq   63 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD---KGLEILAFPCNQ   63 (108)
T ss_dssp             GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG---GTEEEEEEEBST
T ss_pred             ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc---CCeEEEeeehHH
Confidence            5777 999999999999999999999999999988 77799999999987   889999999864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.38  E-value=9.3e-07  Score=78.27  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             ccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           35 VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        35 ~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      ++++++ +||+++|.|| ++||+.|...++.+.++++++++.|  ++|+.|++|..
T Consensus        90 vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~  143 (261)
T PTZ00137         90 FNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSP  143 (261)
T ss_pred             EeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence            788887 8988888888 7999999999999999999999887  88999999873

>PRK13189 peroxiredoxin; Provisional

Probab=98.38  E-value=1.5e-06  Score=75.63  Aligned_cols=65  Identities=25%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             cCcce-eeCCCCcccccC-CCCCeEE-EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQGKVPLSS-CGGKTIC-LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g~~~~~~-~~gk~v~-v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..+++ +.+.+|++.+++ +.||+++ +.||++||+.|...++.+.++++++++.|  ++++.||+|...
T Consensus        14 ~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~   81 (222)
T PRK13189         14 KFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVF   81 (222)
T ss_pred             cCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHH
Confidence            44555 667777766666 5899554 57889999999999999999999998877  889999999754

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.9e-06  Score=69.74  Aligned_cols=75  Identities=24%  Similarity=0.376  Sum_probs=64.2

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      ..++| |++.+|+ ++++++.||+|+|+||. .+.+-|...+-.|.+.+.++++.|  .+|+.||.|... +.+++.+..
T Consensus         9 ~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~-~~~~F~~k~   85 (157)
T COG1225           9 KAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPK-SHKKFAEKH   85 (157)
T ss_pred             cCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHH-HHHHHHHHh
Confidence            55667 9999999 99999999999999998 889999999999999999999887  889999999644 445555544


Q ss_pred             C
Q 018726          100 P  100 (351)
Q Consensus       100 ~  100 (351)
                      .
T Consensus        86 ~   86 (157)
T COG1225          86 G   86 (157)
T ss_pred             C
Confidence            4

>PRK15000 peroxidase; Provisional

Probab=98.37  E-value=1.4e-06  Score=74.61  Aligned_cols=47  Identities=32%  Similarity=0.552  Sum_probs=43.2

Q ss_pred             CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           41 GGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        41 ~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +||+++|.||+ .||+.|...++.+.++++++++.|  ++|+.|++|...
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~   80 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEF   80 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence            79999999999 599999999999999999999887  899999999653

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.35  E-value=1e-06  Score=61.35  Aligned_cols=60  Identities=10%  Similarity=0.115  Sum_probs=44.6

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      -+..|+++||++|+++.+.++++++...    .+.+..++++.+. ...+.++....|++.++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~-~l~~~~~i~~vPti~i~~~   61 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFP-DLADEYGVMSVPAIVINGK   61 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCH-hHHHHcCCcccCEEEECCE
Confidence            3678999999999999999999976532    2667777766554 3555667777888887663

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=4.8e-07  Score=85.92  Aligned_cols=69  Identities=28%  Similarity=0.556  Sum_probs=61.7

Q ss_pred             cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726          164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  243 (351)
Q Consensus       164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  243 (351)
                      |..+|.||++||++|+.+.|.+.++++.... +.+-+.|.+|++-.+.                     +..+++.|+|.
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~  115 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-WRPVVRVAAVDCADEE---------------------NVKLCREFSVS  115 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-ccceeEEEEeeccchh---------------------hhhhHhhcCCC
Confidence            5788999999999999999999999999886 7788888888886654                     68999999999


Q ss_pred             ceeeEEEECCC
Q 018726          244 GIPALVLIGPD  254 (351)
Q Consensus       244 ~~P~~~lid~~  254 (351)
                      ++|++..+.++
T Consensus       116 ~~Ptlryf~~~  126 (606)
T KOG1731|consen  116 GYPTLRYFPPD  126 (606)
T ss_pred             CCceeeecCCc
Confidence            99999999766

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.26  E-value=2.4e-06  Score=73.43  Aligned_cols=119  Identities=15%  Similarity=0.225  Sum_probs=82.5

Q ss_pred             HHhhhccCCCcEe-cCCCcc-eeecccC--CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---
Q 018726          137 EQLLAIEGRDYVL-SRDHRK-ITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---  209 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g~~-~~l~~~~--gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---  209 (351)
                      +..+|.+|||..+ +++|++ .++.++.  +|++||+|.+-.||+-+.-+..++++.++|.+    .+.++.|-+.+   
T Consensus        72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d----~adFl~VYI~EAHp  147 (237)
T PF00837_consen   72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD----VADFLIVYIEEAHP  147 (237)
T ss_pred             ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh----hhheehhhHhhhCc
Confidence            3456999999999 999998 8999985  68999999999999999999999999999983    33344444321   


Q ss_pred             -----------------CH-H--HHHhhhccCCceeeccCch-hhHHHHHHcCcCceeeEEEECCCCceEeccc
Q 018726          210 -----------------DH-K--EFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPDGKTISTNG  262 (351)
Q Consensus       210 -----------------~~-~--~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~  262 (351)
                                       +. +  ..++.+.... ...|+..| -++...+.||..--. +||| ++|+|+|.+|
T Consensus       148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~PeR-lyIi-~~gkv~Y~Gg  218 (237)
T PF00837_consen  148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPER-LYII-QDGKVVYKGG  218 (237)
T ss_pred             CCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcce-EEEE-ECCEEEEeCC
Confidence                             00 1  1111222111 34555444 356777778765333 5555 7999999975

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.21  E-value=5.8e-06  Score=63.40  Aligned_cols=69  Identities=41%  Similarity=0.700  Sum_probs=54.0

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .....+++++++.||++||++|+.+.|.+.++.+++.    ..+.++.++..+.                      ...+
T Consensus        26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~i~~~~~----------------------~~~~   79 (127)
T COG0526          26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG----GDVEVVAVNVDDE----------------------NPDL   79 (127)
T ss_pred             ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc----CCcEEEEEECCCC----------------------ChHH
Confidence            3344448899999999999999999999999999986    3567888877511                      3566


Q ss_pred             HHHcC--cCceeeEEEE
Q 018726          237 CRIFN--IKGIPALVLI  251 (351)
Q Consensus       237 ~~~~~--i~~~P~~~li  251 (351)
                      ...|+  +..+|+++++
T Consensus        80 ~~~~~~~~~~~p~~~~~   96 (127)
T COG0526          80 AAEFGVAVRSIPTLLLF   96 (127)
T ss_pred             HHHHhhhhccCCeEEEE
Confidence            77777  7888988765

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.21  E-value=5.1e-06  Score=63.70  Aligned_cols=68  Identities=24%  Similarity=0.466  Sum_probs=50.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh--cCCceeeec--ChHH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK--CMPWLAVPF--DETL  110 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~--~~~~~~~~~--~~~~  110 (351)
                      ..++++++.||++||++|+.++|.+.++++.+...   +.++.++...........+.  ...+|++..  ++..
T Consensus        30 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  101 (127)
T COG0526          30 LKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE  101 (127)
T ss_pred             cCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence            34899999999999999999999999999998762   56777776522223444455  666777764  4443

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.20  E-value=9.6e-06  Score=54.78  Aligned_cols=63  Identities=29%  Similarity=0.590  Sum_probs=48.7

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.||++||++|....+.+.++  .+..   .++.++.++++.....                    ......+++..+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P   55 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLN---KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVP   55 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhC---CCcEEEEEEcCCChHH--------------------hhHHHhCCCcccc
Confidence            5789999999999999999988  3332   7899999998875311                    1113578899999


Q ss_pred             eEEEECCC
Q 018726          247 ALVLIGPD  254 (351)
Q Consensus       247 ~~~lid~~  254 (351)
                      ++++++++
T Consensus        56 ~~~~~~~~   63 (69)
T cd01659          56 TLVVFGPG   63 (69)
T ss_pred             EEEEEeCC
Confidence            99999765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.12  E-value=5.5e-06  Score=61.18  Aligned_cols=67  Identities=13%  Similarity=0.024  Sum_probs=53.1

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      .++++.+-+..|+++||++|+...+.+.++++.+. +   +.+..++++... ...+.++++..|++.++|+
T Consensus         8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~---i~~~~vd~~~~~-e~a~~~~V~~vPt~vidG~   74 (89)
T cd03026           8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-N---IEHEMIDGALFQ-DEVEERGIMSVPAIFLNGE   74 (89)
T ss_pred             HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-C---ceEEEEEhHhCH-HHHHHcCCccCCEEEECCE
Confidence            36788889999999999999999999999998653 2   667777766443 4666788888889988765

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.11  E-value=2.7e-05  Score=63.50  Aligned_cols=87  Identities=24%  Similarity=0.374  Sum_probs=47.8

Q ss_pred             cceeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCH-HHHHhhhccCCceeeccC
Q 018726          154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDH-KEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~  229 (351)
                      +.+..+.-.+|+++|.++++||..|..+...-   .++++.+++      .+|.|.+|+++ .++...+.          
T Consensus        28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~----------   91 (163)
T PF03190_consen   28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYM----------   91 (163)
T ss_dssp             HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHH----------
T ss_pred             HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHH----------
Confidence            34555555789999999999999999887521   234444442      36666677653 22222221          


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                          .......|..|+|++++++|+|+.++.
T Consensus        92 ----~~~~~~~~~gGwPl~vfltPdg~p~~~  118 (163)
T PF03190_consen   92 ----NAVQAMSGSGGWPLTVFLTPDGKPFFG  118 (163)
T ss_dssp             ----HHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred             ----HHHHHhcCCCCCCceEEECCCCCeeee
Confidence                111122277899999999999999876

; PDB: 3IRA_A.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=98.07  E-value=1.9e-05  Score=67.95  Aligned_cols=73  Identities=26%  Similarity=0.452  Sum_probs=63.2

Q ss_pred             cceeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHh-hcCCcEEEEEEEecCChhh---HHHHHh
Q 018726           25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDENG---FEEHFK   97 (351)
Q Consensus        25 ~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~-~~~~~~~iv~i~~d~~~~~---~~~~~~   97 (351)
                      ...|.+.+|+ +.+..++||+++|.|.-+.|+. |..+...+.++.+++. ..+..+++++|++|.+++.   .+++..
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~  127 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE  127 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence            3459999999 9999999999999999999998 9999999999999998 6677799999999975543   555544

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.05  E-value=5.3e-05  Score=75.31  Aligned_cols=175  Identities=13%  Similarity=0.083  Sum_probs=102.1

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH-HhcCCceeeec---ChH-HHH
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH-FKCMPWLAVPF---DET-LHK  112 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~-~~~~~~~~~~~---~~~-~~~  112 (351)
                      ..+++.+.++.|+.+.|..|..+...+++++. +.++   +.+...+...+.+.+.++ ++..  |++.+   +++ ..-
T Consensus       362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~~~~~~~~~~v~~~--P~~~i~~~~~~~~~i  435 (555)
T TIGR03143       362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGEEPESETLPKITKL--PTVALLDDDGNYTGL  435 (555)
T ss_pred             HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEeccccchhhHhhcCCCcC--CEEEEEeCCCcccce
Confidence            35788888999999999899998888888885 4544   666666655444333333 3334  45544   222 223


Q ss_pred             HHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcc-eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH
Q 018726          113 KLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE  191 (351)
Q Consensus       113 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~-~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~  191 (351)
                      +|.|--.=.++..++..-..       ++...+.    ++.+. -.+..+.++..+-.|.+++||+|......++++..+
T Consensus       436 ~f~g~P~G~Ef~s~i~~i~~-------~~~~~~~----l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~  504 (555)
T TIGR03143       436 KFHGVPSGHELNSFILALYN-------AAGPGQP----LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL  504 (555)
T ss_pred             EEEecCccHhHHHHHHHHHH-------hcCCCCC----CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence            44431111122111111100       0000000    00000 012344556667788999999999988888887776


Q ss_pred             hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       192 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .     +++..-.|....                       ..+++++|+|.++|++++   ||++++.
T Consensus       505 ~-----~~i~~~~i~~~~-----------------------~~~~~~~~~v~~vP~~~i---~~~~~~~  542 (555)
T TIGR03143       505 N-----PNVEAEMIDVSH-----------------------FPDLKDEYGIMSVPAIVV---DDQQVYF  542 (555)
T ss_pred             C-----CCceEEEEECcc-----------------------cHHHHHhCCceecCEEEE---CCEEEEe
Confidence            4     345555555543                       368899999999999887   5666654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.03  E-value=7.5e-05  Score=58.87  Aligned_cols=70  Identities=11%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             cEEEEEEecC--CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          164 KTIGLYFGAH--WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       164 k~vll~F~a~--~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ...+|+|-+.  -+|-+....-.|.++.++|.+   .++.++.|++|.+                       ..++.+||
T Consensus        35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~---~~v~~akVDiD~~-----------------------~~LA~~fg   88 (132)
T PRK11509         35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQS-----------------------EAIGDRFG   88 (132)
T ss_pred             CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC---CceEEEEEECCCC-----------------------HHHHHHcC
Confidence            3455555432  344577777889999999964   5588999998875                       79999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        89 V~siPTLl~F-kdGk~v~~  106 (132)
T PRK11509         89 VFRFPATLVF-TGGNYRGV  106 (132)
T ss_pred             CccCCEEEEE-ECCEEEEE
Confidence            9999999999 89998877

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=97.92  E-value=4.2e-05  Score=65.91  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             CceeeecccCcceeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhc-CCcEEEEEEEecCCh--
Q 018726           15 DFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDHDE--   89 (351)
Q Consensus        15 ~~~~~~~~~~~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~-~~~~~iv~i~~d~~~--   89 (351)
                      +.-+..-| ++..|++.+|+ ++..++.||+++|+|.-+.||. |...+..|.++-+++..+ |..+.-+||++|..+  
T Consensus       112 ~~gk~~iG-GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~  190 (280)
T KOG2792|consen  112 TAGKPAIG-GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDS  190 (280)
T ss_pred             hcCCCccC-CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCC
Confidence            33443333 56669999999 9999999999999999999998 999999999988888666 544568999999744  


Q ss_pred             -hhHHHHHhcCCceeee
Q 018726           90 -NGFEEHFKCMPWLAVP  105 (351)
Q Consensus        90 -~~~~~~~~~~~~~~~~  105 (351)
                       +.++++++.+. |.+.
T Consensus       191 ~~~~~eY~~eF~-pkll  206 (280)
T KOG2792|consen  191 VEVVAEYVSEFH-PKLL  206 (280)
T ss_pred             HHHHHHHHHhcC-hhhh
Confidence             35888888775 4443

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=1.9e-05  Score=66.20  Aligned_cols=93  Identities=25%  Similarity=0.465  Sum_probs=72.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +.+++++.|++.|.+.|....|.+.++..+|..   +.+.+-.|++..-                       ...+.+|+
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~---~~lkFGkvDiGrf-----------------------pd~a~kfr  196 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN---NLLKFGKVDIGRF-----------------------PDVAAKFR  196 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCC---CCCcccceeeccC-----------------------cChHHhee
Confidence            346899999999999999999999999999976   7788887777653                       35566776


Q ss_pred             c------CceeeEEEECCCCceEeccccceeeccC-CcCCCCchhhHHH
Q 018726          242 I------KGIPALVLIGPDGKTISTNGKEMISLYG-AKAFPFTESRIAE  283 (351)
Q Consensus       242 i------~~~P~~~lid~~G~v~~~~~~~~~~~~g-~~~~p~~~~~~~~  283 (351)
                      |      +.+||++++ ++|+-+.|.  ..+...| +..++++++.+-.
T Consensus       197 is~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv~~  242 (265)
T KOG0914|consen  197 ISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENVCQ  242 (265)
T ss_pred             eccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHHHH
Confidence            6      468999999 889877663  3333343 6778888876654

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=97.90  E-value=4.8e-05  Score=62.45  Aligned_cols=60  Identities=28%  Similarity=0.442  Sum_probs=49.5

Q ss_pred             eeCCC---Cc-ccccC-CCCCeEEEEEeC-CCChhhhhh-hHHHHHHHHHHhhcCCcE-EEEEEEecCCh
Q 018726           28 LLSRQ---GK-VPLSS-CGGKTICLFFSA-NWCRPCKTF-TPQLVQLYDTLRTRGTEL-EVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~---g~-~~~~~-~~gk~v~v~F~a-~wC~~C~~~-~p~~~~l~~~~~~~~~~~-~iv~i~~d~~~   89 (351)
                      |.+.+   |+ +++++ ++||+++|.||. .||+.|... ++.+.+.++++.+.|  + +|+.|+.|...
T Consensus        10 l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~   77 (155)
T cd03013          10 LFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF   77 (155)
T ss_pred             eeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH
Confidence            55553   78 99999 588766666665 999999999 999999999998887  6 59999998654

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.87  E-value=2.7e-05  Score=75.04  Aligned_cols=76  Identities=20%  Similarity=0.394  Sum_probs=54.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHH-HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLI-EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~-~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      ++|+|+|+|||.||-.|+...+..- +....++-   .++..+-+++-.+                   +....++.++|
T Consensus       473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---~~~vlLqaDvT~~-------------------~p~~~~lLk~~  530 (569)
T COG4232         473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---QDVVLLQADVTAN-------------------DPAITALLKRL  530 (569)
T ss_pred             CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---CCeEEEEeeecCC-------------------CHHHHHHHHHc
Confidence            4569999999999999999887543 33333332   4555555544332                   22357889999


Q ss_pred             CcCceeeEEEECCCCceEe
Q 018726          241 NIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~  259 (351)
                      |+-+.|++++++++|+-..
T Consensus       531 ~~~G~P~~~ff~~~g~e~~  549 (569)
T COG4232         531 GVFGVPTYLFFGPQGSEPE  549 (569)
T ss_pred             CCCCCCEEEEECCCCCcCc
Confidence            9999999999999987543

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.85  E-value=0.0001  Score=52.52  Aligned_cols=63  Identities=16%  Similarity=0.314  Sum_probs=39.6

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH-HcCcCce
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IFNIKGI  245 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~i~~~  245 (351)
                      +..||++||++|++..+.|.++.          +.+-.++++.+...                   ...+.. .+++.++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~----------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~v   52 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG----------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTV   52 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC----------CceEEEeCcCCHhH-------------------HHHHHHHhCCCcee
Confidence            56899999999999988775542          23445666654210                   112211 2488899


Q ss_pred             eeEEEECCCCceEec
Q 018726          246 PALVLIGPDGKTIST  260 (351)
Q Consensus       246 P~~~lid~~G~v~~~  260 (351)
                      |++ ++ .+|+++..
T Consensus        53 P~i-~~-~~g~~l~~   65 (77)
T TIGR02200        53 PTV-KF-ADGSFLTN   65 (77)
T ss_pred             CEE-EE-CCCeEecC
Confidence            986 45 46776654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.84  E-value=2.6e-05  Score=60.49  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=54.2

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCC---hhhHHHHHhcCCceeeec-C
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD---ENGFEEHFKCMPWLAVPF-D  107 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~~~~~~~~~~~~-~  107 (351)
                      +..+..++|+++|+|+++||++|+.+....   .++.+.+++.     ++++.+|.+   ...+...+....+|++.+ +
T Consensus        10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~   84 (114)
T cd02958          10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID   84 (114)
T ss_pred             HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence            344556899999999999999999987643   4555555543     445555543   224667777778888887 3


Q ss_pred             ---hHHHHHHhhhhhhhHH
Q 018726          108 ---ETLHKKLRIRKRREEL  123 (351)
Q Consensus       108 ---~~~~~~l~~~~~~~~l  123 (351)
                         |+...++.|....+++
T Consensus        85 ~~~g~~l~~~~G~~~~~~f  103 (114)
T cd02958          85 PRTGEVLKVWSGNITPEDL  103 (114)
T ss_pred             CccCcEeEEEcCCCCHHHH
Confidence               4444455554433333

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.84  E-value=4.4e-05  Score=59.11  Aligned_cols=77  Identities=21%  Similarity=0.449  Sum_probs=48.7

Q ss_pred             CCcEEEEEEec-------CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726          162 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  234 (351)
Q Consensus       162 ~gk~vll~F~a-------~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~  234 (351)
                      .|+.++|.|.+       +|||.|....|.+++.....+    .+..+|.+.+.. ...|+.               ++.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~----~~~~lv~v~VG~-r~~Wkd---------------p~n   77 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP----ENARLVYVEVGD-RPEWKD---------------PNN   77 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S----TTEEEEEEE----HHHHC----------------TTS
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC----CCceEEEEEcCC-HHHhCC---------------CCC
Confidence            46777888875       699999999999998887754    567788777753 233322               133


Q ss_pred             HHHH--HcCcCceeeEEEECCCCceE
Q 018726          235 DLCR--IFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       235 ~~~~--~~~i~~~P~~~lid~~G~v~  258 (351)
                      .+..  .+++.++||++-++..++++
T Consensus        78 ~fR~~p~~~l~~IPTLi~~~~~~rL~  103 (119)
T PF06110_consen   78 PFRTDPDLKLKGIPTLIRWETGERLV  103 (119)
T ss_dssp             HHHH--CC---SSSEEEECTSS-EEE
T ss_pred             CceEcceeeeeecceEEEECCCCccc
Confidence            4444  69999999999996554433

; PDB: 1V9W_A 1WOU_A.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.00021  Score=56.91  Aligned_cols=89  Identities=22%  Similarity=0.403  Sum_probs=61.6

Q ss_pred             ccCCcEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHH-HHHhhhccCCceeeccCchhhHH
Q 018726          160 ELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHK-EFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       160 ~~~gk~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~-~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      ...+|+.++.|....|+.|.++-..+.   ++.+.+.    +++.++.+.+..... .+..--.        ...-..++
T Consensus        39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk----~hf~~~~l~i~~skpv~f~~g~k--------ee~~s~~E  106 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK----EHFSAYYLNISYSKPVLFKVGDK--------EEKMSTEE  106 (182)
T ss_pred             CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh----hCeEEEEEEeccCcceEeecCce--------eeeecHHH
Confidence            346899999999999999998877653   3444444    677788877754320 0000000        00012469


Q ss_pred             HHHHcCcCceeeEEEECCCCceEec
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +++.|+++++|+++++|.+|+.+..
T Consensus       107 La~kf~vrstPtfvFfdk~Gk~Il~  131 (182)
T COG2143         107 LAQKFAVRSTPTFVFFDKTGKTILE  131 (182)
T ss_pred             HHHHhccccCceEEEEcCCCCEEEe
Confidence            9999999999999999999987766

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.78  E-value=1e-05  Score=50.57  Aligned_cols=30  Identities=33%  Similarity=0.712  Sum_probs=27.3

Q ss_pred             eeccccCCCceEEEEcCCC-CCCCCccccCc
Q 018726          317 VCDCCKMRGRFWAFSCDVC-NYDLHPKCVEG  346 (351)
Q Consensus       317 ~Cd~C~~~~~~~~~~c~~~-~~~~~~~c~~~  346 (351)
                      .||.|++...|.+|+|.+| ||||+..|...
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~   32 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK   32 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence            6999999999999999999 59999999653

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.73  E-value=0.00029  Score=54.70  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             ccCCcEEEEEEecC----CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          160 ELAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       160 ~~~gk~vll~F~a~----~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      .-.+|.++|+++++    ||..|+..+.. .++.+-++    .++.+.+.++...+                     ...
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln----~~fv~w~~dv~~~e---------------------g~~   67 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN----TRMLFWACSVAKPE---------------------GYR   67 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH----cCEEEEEEecCChH---------------------HHH
Confidence            34589999999999    88889776631 23333343    45555555555432                     468


Q ss_pred             HHHHcCcCceeeEEEE---CCCCceEec
Q 018726          236 LCRIFNIKGIPALVLI---GPDGKTIST  260 (351)
Q Consensus       236 ~~~~~~i~~~P~~~li---d~~G~v~~~  260 (351)
                      ++..+++.++|+++++   +.+.+++.+
T Consensus        68 la~~l~~~~~P~~~~l~~~~~~~~vv~~   95 (116)
T cd02991          68 VSQALRERTYPFLAMIMLKDNRMTIVGR   95 (116)
T ss_pred             HHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence            9999999999999999   444455555

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.68  E-value=0.00022  Score=50.05  Aligned_cols=55  Identities=20%  Similarity=0.637  Sum_probs=40.2

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +..|+++||++|+...+.|.+          .++.+..++++.+...                   ...+.+.+++.++|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~----------~~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP   52 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS----------KGIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVP   52 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH----------CCCeEEEEeccCCHHH-------------------HHHHHHHhCCCccc
Confidence            468999999999998776643          3456777777754311                   23567788999999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      ++++
T Consensus        53 ~~~~   56 (74)
T TIGR02196        53 VIVI   56 (74)
T ss_pred             EEEE
Confidence            9886

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.00013  Score=55.34  Aligned_cols=72  Identities=24%  Similarity=0.377  Sum_probs=54.3

Q ss_pred             CCcEEEEEEec--------CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726          162 AGKTIGLYFGA--------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  233 (351)
Q Consensus       162 ~gk~vll~F~a--------~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~  233 (351)
                      +|+.+.+.|.+        +|||.|.+..|.+.+..+...    .++.+|.|.+...                |+..++.
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----~~~~~v~v~VG~r----------------p~Wk~p~   83 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----EDVHFVHVYVGNR----------------PYWKDPA   83 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----CceEEEEEEecCC----------------CcccCCC
Confidence            46667888875        799999999999998888665    6788888877642                2334445


Q ss_pred             HHHHHHcCc-CceeeEEEECC
Q 018726          234 QDLCRIFNI-KGIPALVLIGP  253 (351)
Q Consensus       234 ~~~~~~~~i-~~~P~~~lid~  253 (351)
                      ..+....++ .++||++=.+.
T Consensus        84 n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   84 NPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             CccccCCCceeecceeeEEcC
Confidence            666667777 89999998864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.63  E-value=0.0013  Score=64.93  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ..+.+..-+..|.+++||+|+.....+++++...     +++..-.|  |...                     ..+++.
T Consensus       112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----~~i~~~~i--d~~~---------------------~~~~~~  163 (517)
T PRK15317        112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----PNITHTMI--DGAL---------------------FQDEVE  163 (517)
T ss_pred             HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----CCceEEEE--Echh---------------------CHhHHH
Confidence            3444567788999999999999888888887653     44555444  4332                     468899


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|++.++|++++   +|+.++.
T Consensus       164 ~~~v~~VP~~~i---~~~~~~~  182 (517)
T PRK15317        164 ARNIMAVPTVFL---NGEEFGQ  182 (517)
T ss_pred             hcCCcccCEEEE---CCcEEEe
Confidence            999999999976   4454433

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.62  E-value=0.00017  Score=52.31  Aligned_cols=60  Identities=22%  Similarity=0.441  Sum_probs=42.0

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++|||+|+...+.|.++.  .+    ..+.++-|+.+.+..++                  ...+.+.+++..+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----~~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP   56 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VK----PAYEVVELDQLSNGSEI------------------QDYLEEITGQRTVP   56 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CC----CCCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence            47899999999999999988765  22    33667777665432111                  13466778999999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      ++++
T Consensus        57 ~v~i   60 (84)
T TIGR02180        57 NIFI   60 (84)
T ss_pred             eEEE
Confidence            9854

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=97.61  E-value=0.00036  Score=53.18  Aligned_cols=57  Identities=30%  Similarity=0.450  Sum_probs=52.2

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +.+.+|+ ++++.++||++||-=.|+-|+.-. ....+++|+++|+..|  +.|+..-++.
T Consensus         6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq   63 (108)
T PF00255_consen    6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ   63 (108)
T ss_dssp             EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred             eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence            7789999 999999999999999999999877 7889999999999888  8888888863

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.56  E-value=0.00012  Score=52.05  Aligned_cols=53  Identities=21%  Similarity=0.433  Sum_probs=35.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH----HhcCCceeeecC
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH----FKCMPWLAVPFD  107 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~----~~~~~~~~~~~~  107 (351)
                      +..||++||++|+++.+.+.++       +  +.+..++++.+.......    +....+|++.++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~   58 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFA   58 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEEC
Confidence            5689999999999999987653       2  345567777654332222    245567888663

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.54  E-value=0.00024  Score=47.67  Aligned_cols=57  Identities=19%  Similarity=0.395  Sum_probs=40.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH--HHHhcCCceeeec
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE--EHFKCMPWLAVPF  106 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~--~~~~~~~~~~~~~  106 (351)
                      ++.||++||++|+++.+.+.++ +. ...+  +.++.++++.......  ........|++.+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~   59 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-AL-LNKG--VKFEAVDVDEDPALEKELKRYGVGGVPTLVV   59 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-Hh-hCCC--cEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence            5789999999999999999998 32 2223  7888888887654433  2445555677766

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.54  E-value=0.00068  Score=60.21  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC---CC-------------CH-HHHHhhhccCCce
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR-------------DH-KEFDLNHSIMPWL  224 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~-------------~~-~~~~~~~~~~~~~  224 (351)
                      .++.+++.|..+.||+|+++...+.++.+.      .++.|..+.+   ..             +. +.+..........
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~  189 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL  189 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence            578999999999999999999887765442      3355555543   11             11 1111111111100


Q ss_pred             ee-cc---------CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          225 AI-PY---------EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       225 ~~-~~---------~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+ +.         ..+.+..+.+.+|+.++|++|+.|.+|++...
T Consensus       190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v  235 (251)
T PRK11657        190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV  235 (251)
T ss_pred             CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence            00 10         11235578889999999999999989986444

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.52  E-value=0.00085  Score=47.84  Aligned_cols=57  Identities=26%  Similarity=0.493  Sum_probs=40.3

Q ss_pred             ecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEE
Q 018726          171 GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVL  250 (351)
Q Consensus       171 ~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~l  250 (351)
                      ++++|+.|......++++.++++    -++++  +.. .+                      ...+ .+||+.++|++++
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~----i~~ei--~~~-~~----------------------~~~~-~~ygv~~vPalvI   55 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG----IEVEI--IDI-ED----------------------FEEI-EKYGVMSVPALVI   55 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT----EEEEE--EET-TT----------------------HHHH-HHTT-SSSSEEEE
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC----CeEEE--EEc-cC----------------------HHHH-HHcCCCCCCEEEE
Confidence            57779999998888888877763    33333  333 22                      2455 9999999999954


Q ss_pred             ECCCCceEec
Q 018726          251 IGPDGKTIST  260 (351)
Q Consensus       251 id~~G~v~~~  260 (351)
                         ||++++.
T Consensus        56 ---ng~~~~~   62 (76)
T PF13192_consen   56 ---NGKVVFV   62 (76)
T ss_dssp             ---TTEEEEE
T ss_pred             ---CCEEEEE
Confidence               5888766

...

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=97.51  E-value=4.5e-05  Score=48.08  Aligned_cols=29  Identities=34%  Similarity=0.811  Sum_probs=25.8

Q ss_pred             eeccccC-CCceEEEEcCCC-CCCCCccccC
Q 018726          317 VCDCCKM-RGRFWAFSCDVC-NYDLHPKCVE  345 (351)
Q Consensus       317 ~Cd~C~~-~~~~~~~~c~~~-~~~~~~~c~~  345 (351)
                      .||.|++ ...|.+|+|.+| ||||+..|..
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~   32 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH   32 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence            6999996 567999999999 5999999965

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.43  E-value=0.0037  Score=61.74  Aligned_cols=70  Identities=20%  Similarity=0.260  Sum_probs=50.0

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ..+.+..-+..|..+.||+|+.....+++++...     +++..-.  +|...                     ..+++.
T Consensus       113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-----p~i~~~~--id~~~---------------------~~~~~~  164 (515)
T TIGR03140       113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-----PNISHTM--IDGAL---------------------FQDEVE  164 (515)
T ss_pred             HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-----CCceEEE--EEchh---------------------CHHHHH
Confidence            3445667788999999999998888887776654     3444433  34332                     468889


Q ss_pred             HcCcCceeeEEEECCCCceEe
Q 018726          239 IFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~  259 (351)
                      +|++.++|++++   +|+.+.
T Consensus       165 ~~~v~~VP~~~i---~~~~~~  182 (515)
T TIGR03140       165 ALGIQGVPAVFL---NGEEFH  182 (515)
T ss_pred             hcCCcccCEEEE---CCcEEE
Confidence            999999999986   344443

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00095  Score=56.67  Aligned_cols=71  Identities=18%  Similarity=0.309  Sum_probs=52.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHH--HhcCCceeeecChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEH--FKCMPWLAVPFDETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~  117 (351)
                      +++.+++.|||+||.+|.++...+..+++..+      +..+++++.++- .+...  ++..|+..+.+.+....++.+.
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~------~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~   89 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK------NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGA   89 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh------hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhcc
Confidence            78899999999999999999999999999872      255666665433 24444  5566665555588888888763

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.40  E-value=0.00027  Score=51.20  Aligned_cols=59  Identities=17%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH----HHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE----EHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~----~~~~~~~~~~~~~~~~  109 (351)
                      ++.|+++||++|+++.+.+.++.  ....   +.++-++.+.+.....    +......+|++..+|.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~---~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPA---YEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCC---CEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence            47899999999999999998865  2211   4455554443333333    3334456778876664

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.36  E-value=0.0016  Score=57.11  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=54.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHhhhccCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP  222 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~  222 (351)
                      .|+.+++.|..+.||+|++..+.+.++.+       .++.|..+....   ..                +.+........
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~  178 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD  178 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence            47899999999999999999988776532       345555543321   10                12222221111


Q ss_pred             c--eeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          223 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       223 ~--~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      .  .......+....+++++||.++|++++  ++|+++
T Consensus       179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~  214 (232)
T PRK10877        179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV  214 (232)
T ss_pred             CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence            0  011112245678999999999999885  567765

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.36  E-value=0.00046  Score=48.32  Aligned_cols=54  Identities=17%  Similarity=0.349  Sum_probs=37.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhH---HHHHhcCCceeeecCh
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF---EEHFKCMPWLAVPFDE  108 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~---~~~~~~~~~~~~~~~~  108 (351)
                      +..|+++||++|++..+.+.+       .+  +.+..++++.+....   .+.+.....|++.+++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~   58 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGH   58 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHHHHHHHHHhCCCcccEEEECC
Confidence            567999999999999887764       23  567777887665433   3335555567777664

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.29  E-value=0.0002  Score=56.76  Aligned_cols=66  Identities=20%  Similarity=0.293  Sum_probs=44.3

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH--HhcCCceeeec
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH--FKCMPWLAVPF  106 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~--~~~~~~~~~~~  106 (351)
                      ++....+.-++-|..+|||+|+...|.+.++++...    ++++.++..|.+.+...++  .+...+|++.+
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~  103 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIF  103 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEE
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEE
Confidence            344567788999999999999999999999999743    2789999988776655555  33556788888

>smart00594 UAS UAS domain

Probab=97.29  E-value=0.00094  Score=52.42  Aligned_cols=67  Identities=16%  Similarity=0.246  Sum_probs=45.7

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCC--h-hhHHHHHhcCCceeeec
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD--E-NGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~--~-~~~~~~~~~~~~~~~~~  106 (351)
                      +..+..++|+++|+|+++||++|+.+...+   .++.+.++++     ++++.+|.+  + ..+.+.++...+|++.+
T Consensus        20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~-----fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~   92 (122)
T smart00594       20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN-----FIFWQVDVDTSEGQRVSQFYKLDSFPYVAI   92 (122)
T ss_pred             HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC-----EEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence            444456899999999999999999987754   3444444433     555555533  2 24677777777787777

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.27  E-value=0.00054  Score=56.00  Aligned_cols=67  Identities=18%  Similarity=0.382  Sum_probs=40.6

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChh-hHHHHH--------hcCCce
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDEN-GFEEHF--------KCMPWL  102 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~--------~~~~~~  102 (351)
                      +..+..++|+|+|.++++||+.|..|....   .++++-++..     +|-|.+|.++. .+...+        +.-+||
T Consensus        30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP  104 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYMNAVQAMSGSGGWP  104 (163)
T ss_dssp             HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred             HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence            444556899999999999999999987633   4566666655     77777776543 333333        355788


Q ss_pred             eeec
Q 018726          103 AVPF  106 (351)
Q Consensus       103 ~~~~  106 (351)
                      +..|
T Consensus       105 l~vf  108 (163)
T PF03190_consen  105 LTVF  108 (163)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            8887

; PDB: 3IRA_A.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.26  E-value=0.0027  Score=54.31  Aligned_cols=89  Identities=22%  Similarity=0.302  Sum_probs=54.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC--C-H-------------HHHHhhhccCCc--
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--D-H-------------KEFDLNHSIMPW--  223 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~-~-------------~~~~~~~~~~~~--  223 (351)
                      .++..++.|..+.||+|+++.+.+.+    ..  .+-.+.++.+++..  . .             +.|.+......-  
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~  149 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP  149 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----cc--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence            47899999999999999999988766    11  12344455555432  1 1             122222221111  


Q ss_pred             --eeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          224 --LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       224 --~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                        .......+....+++.+|+.++|+++ + ++|+++
T Consensus       150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~  184 (197)
T cd03020         150 PAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV  184 (197)
T ss_pred             CccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence              01112234567899999999999998 4 557653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=97.23  E-value=0.00014  Score=44.58  Aligned_cols=29  Identities=28%  Similarity=0.468  Sum_probs=26.5

Q ss_pred             eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726          317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .||.|+. +..|-+|+|.+|. |||...|-.
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~   32 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFS   32 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhh
Confidence            5999998 6999999999998 999999954

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.21  E-value=0.0028  Score=46.17  Aligned_cols=65  Identities=22%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC--cCc
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG  244 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~  244 (351)
                      +..|+.+||++|+.....|+++..++     .++.+..++++.+..+                   ..++.+.++  +..
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~-----~~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~   58 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEER-----DDFDYRYVDIHAEGIS-------------------KADLEKTVGKPVET   58 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccc-----cCCcEEEEECCCChHH-------------------HHHHHHHHCCCCCc
Confidence            67899999999999999999987654     3466777777654211                   134444444  478


Q ss_pred             eeeEEEECCCCceE
Q 018726          245 IPALVLIGPDGKTI  258 (351)
Q Consensus       245 ~P~~~lid~~G~v~  258 (351)
                      +|++++   +|+.+
T Consensus        59 vP~ifi---~g~~i   69 (85)
T PRK11200         59 VPQIFV---DQKHI   69 (85)
T ss_pred             CCEEEE---CCEEE
Confidence            999764   46554

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.21  E-value=0.0026  Score=42.88  Aligned_cols=55  Identities=20%  Similarity=0.395  Sum_probs=39.0

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+.+|||+|+.....|.+          .++.+-.++++.+.+.                   ...+.+..|..++|
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~----------~~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P   51 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE----------KGIPYEEVDVDEDEEA-------------------REELKELSGVRTVP   51 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH----------TTBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSS
T ss_pred             cEEEEcCCCcCHHHHHHHHHH----------cCCeeeEcccccchhH-------------------HHHHHHHcCCCccC
Confidence            468999999999988776622          4456677777765311                   34555666999999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      ++++
T Consensus        52 ~v~i   55 (60)
T PF00462_consen   52 QVFI   55 (60)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9886

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0011  Score=52.82  Aligned_cols=68  Identities=21%  Similarity=0.332  Sum_probs=56.8

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHh
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK   97 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~   97 (351)
                      .+.+.+|+ +++++++||+++|-=.|+-|+.-. ....++.||++|+++|  +.|+..-++.       +.+++++++.
T Consensus         9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~   84 (162)
T COG0386           9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQ   84 (162)
T ss_pred             eeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHH
Confidence            37899999 999999999999999999999855 5668999999999999  8888887763       4445677754

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.14  E-value=0.00035  Score=67.49  Aligned_cols=62  Identities=19%  Similarity=0.313  Sum_probs=42.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHH-HHHHHHhhcCCcEEEEEEEecCChh--h---HHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRTRGTELEVIFISFDHDEN--G---FEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~-~l~~~~~~~~~~~~iv~i~~d~~~~--~---~~~~~~~~~~~~~~~  106 (351)
                      ++|+|+|+|||+||-.|+.+.+..- +.....+-.    +++....|.+++  .   .-+.++.++.|++.|
T Consensus       473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~----~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~f  540 (569)
T COG4232         473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ----DVVLLQADVTANDPAITALLKRLGVFGVPTYLF  540 (569)
T ss_pred             CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC----CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEE
Confidence            4569999999999999999988654 444433333    366666665432  2   334456677788887

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=97.11  E-value=0.00024  Score=45.45  Aligned_cols=31  Identities=29%  Similarity=0.757  Sum_probs=27.8

Q ss_pred             eeeccccC-CCceEEEEcCCCC---CCCCccccCc
Q 018726          316 YVCDCCKM-RGRFWAFSCDVCN---YDLHPKCVEG  346 (351)
Q Consensus       316 ~~Cd~C~~-~~~~~~~~c~~~~---~~~~~~c~~~  346 (351)
                      |.||.|++ +..|.+|+|.+|.   |||...|-..
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~   35 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK   35 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence            57999999 8999999999998   9999999553

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02249 ZZ Zinc finger, ZZ type

Probab=97.10  E-value=0.00023  Score=45.38  Aligned_cols=31  Identities=32%  Similarity=0.685  Sum_probs=28.4

Q ss_pred             eeeccccCCCceEEEEcCCCC-CCCCccccCc
Q 018726          316 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG  346 (351)
Q Consensus       316 ~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~~  346 (351)
                      |.||.|++...|-+|+|.+|. |||+..|-..
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~   32 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAK   32 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCc
Confidence            579999999999999999999 9999999664

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.08  E-value=0.0011  Score=48.31  Aligned_cols=61  Identities=10%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhc--CCceeeecChHH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKC--MPWLAVPFDETL  110 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~--~~~~~~~~~~~~  110 (351)
                      ++.|+.+||++|.+....++++..+++  +  +.+..++++.+.   +.+.+..+.  ...|++..+|+.
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~   68 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKH   68 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEE
Confidence            678999999999999999999887653  3  678888887653   234443332  456787777653

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=96.95  E-value=0.00045  Score=43.43  Aligned_cols=29  Identities=31%  Similarity=0.793  Sum_probs=26.4

Q ss_pred             eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726          317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .||.|+. ...|.+|+|.+|. |||...|-.
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~   32 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFK   32 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhC
Confidence            6999997 6999999999999 999999955

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.90  E-value=0.0047  Score=55.13  Aligned_cols=69  Identities=16%  Similarity=0.194  Sum_probs=53.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++..|||.||-+.++.|..+...|..|+.+|+     .+.|+.|.....                        .+...|.
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----~vKFvkI~a~~~------------------------~~~~~f~  195 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-----EVKFVKIRASKC------------------------PASENFP  195 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----TSEEEEEEECGC------------------------CTTTTS-
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----ceEEEEEehhcc------------------------CcccCCc
Confidence            34589999999999999999999999999995     477877776532                        2566789


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +..+|+++++ ++|.++..
T Consensus       196 ~~~LPtllvY-k~G~l~~~  213 (265)
T PF02114_consen  196 DKNLPTLLVY-KNGDLIGN  213 (265)
T ss_dssp             TTC-SEEEEE-ETTEEEEE
T ss_pred             ccCCCEEEEE-ECCEEEEe
Confidence            9999999999 89988766

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.90  E-value=0.0066  Score=50.67  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=34.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      .++++|+.|+...||+|+.+.+.+.++.++++    .++.+..+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~----~~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP----KDVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC----CCceEEEcCC
Confidence            57899999999999999999999999988875    4555554443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.88  E-value=0.0021  Score=55.61  Aligned_cols=65  Identities=25%  Similarity=0.298  Sum_probs=51.0

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC----------hhhHHHHHhcCCceeeec
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD----------ENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~----------~~~~~~~~~~~~~~~~~~  106 (351)
                      +....++.-|+.||.+.|+.|..+.|.+..+++++.     +.|+.|++|..          .....+.++..-+|++.+
T Consensus       115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L  189 (215)
T PF13728_consen  115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL  189 (215)
T ss_pred             HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence            445678888999999999999999999999999983     88999999952          123444555555677666

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=96.80  E-value=0.00066  Score=42.77  Aligned_cols=31  Identities=35%  Similarity=0.752  Sum_probs=28.1

Q ss_pred             ceeeccccCCCceEEEEcCCCC-CCCCccccC
Q 018726          315 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       315 ~~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .+.|+.|+....|-+|+|..|. |||.+.|-.
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~   35 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFA   35 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHh
Confidence            4689999999999999999996 999999954

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.80  E-value=0.0036  Score=46.13  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC--CC-----HHHHHhhhc-cCCceeeccCch-hhHHHH
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--RD-----HKEFDLNHS-IMPWLAIPYEDR-ARQDLC  237 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~-~~~~~~~~~~~d-~~~~~~  237 (351)
                      +..|+...||+|....+.+.++.....    .++.+....+.  ..     ......... ........+... .....+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADD----GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA   76 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcC----CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            468999999999999999999874443    56777766653  22     110000000 000000000000 356788


Q ss_pred             HHcCcCceeeEEEEC
Q 018726          238 RIFNIKGIPALVLIG  252 (351)
Q Consensus       238 ~~~~i~~~P~~~lid  252 (351)
                      +.+|+.++|++++-|
T Consensus        77 ~~~g~~g~Pt~v~~~   91 (98)
T cd02972          77 RALGVTGTPTFVVNG   91 (98)
T ss_pred             HHcCCCCCCEEEECC
Confidence            899999999999875

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=96.79  E-value=0.00073  Score=43.64  Aligned_cols=30  Identities=30%  Similarity=0.738  Sum_probs=25.7

Q ss_pred             eeeccccCCCce-EEEEcCCC-CCCCCccccC
Q 018726          316 YVCDCCKMRGRF-WAFSCDVC-NYDLHPKCVE  345 (351)
Q Consensus       316 ~~Cd~C~~~~~~-~~~~c~~~-~~~~~~~c~~  345 (351)
                      |.||.|.+...+ .+|+|.+| ||||...|-.
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~   32 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS   32 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence            579999997555 99999999 5999999954

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=96.75  E-value=0.00059  Score=43.34  Aligned_cols=28  Identities=29%  Similarity=0.759  Sum_probs=26.0

Q ss_pred             eeccccCCCceEEEEcCCCC-CCCCcccc
Q 018726          317 VCDCCKMRGRFWAFSCDVCN-YDLHPKCV  344 (351)
Q Consensus       317 ~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~  344 (351)
                      .||+|++...|.+|+|-+|. |||...|-
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf   30 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCF   30 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHH
Confidence            59999998899999999998 99999994

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=96.69  E-value=0.001  Score=42.73  Aligned_cols=29  Identities=31%  Similarity=0.663  Sum_probs=26.1

Q ss_pred             eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726          317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .||.|+. ...|.+|+|-+|. |||...|-.
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~   32 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF   32 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence            5999997 6899999999998 999999943

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=96.68  E-value=0.038  Score=44.62  Aligned_cols=120  Identities=11%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH-hhcccCCceEEEEE-eCCCCH--------HHHHhhhccCCc
Q 018726          154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANHCFEVVLV-STDRDH--------KEFDLNHSIMPW  223 (351)
Q Consensus       154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-~~~~~~~~~~vv~v-~~d~~~--------~~~~~~~~~~~~  223 (351)
                      ++.+.+.+.||+-+|...|-.-..=..-.|.++.+.+. |+.   ++++...| +.|+..        ...+...+.+||
T Consensus        28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~  104 (160)
T PF09695_consen   28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW  104 (160)
T ss_pred             cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence            34455677899988877765433333344555555444 543   55665543 454321        233344445666


Q ss_pred             eeeccCchhhHHHHHHcCcCc-eeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHH
Q 018726          224 LAIPYEDRARQDLCRIFNIKG-IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK  289 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~-~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~  289 (351)
                      ..+-.  |.+..+...|+... --.++++|++|+|++..       .|    ..+++.+++..+.++
T Consensus       105 s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~~Ev~qVi~Ll~  158 (160)
T PF09695_consen  105 SQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSPAEVQQVIALLK  158 (160)
T ss_pred             cEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCHHHHHHHHHHHh
Confidence            55543  34567788888754 45688999999999883       45    345666766655544

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0056  Score=49.51  Aligned_cols=57  Identities=25%  Similarity=0.433  Sum_probs=52.3

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      ..+.+|+ ++++.++||++||-=-|+-|+.=..-...+..|+++|++.|  +.|+.--++
T Consensus        19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN   76 (171)
T KOG1651|consen   19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN   76 (171)
T ss_pred             EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence            7899999 99999999999999999999987777789999999999998  888877776

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.64  E-value=0.0068  Score=40.83  Aligned_cols=55  Identities=20%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh---HHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~---~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|+.+||++|++....|.       ..|  +.+..++++.+++.   +.+..+....|++..+|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~-------~~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLD-------EKG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-------HTT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTE
T ss_pred             cEEEEcCCCcCHHHHHHHHH-------HcC--CeeeEcccccchhHHHHHHHHcCCCccCEEEECCE
Confidence            46799999999999887774       334  67888888877533   333345566777776663

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=96.64  E-value=0.015  Score=49.90  Aligned_cols=114  Identities=11%  Similarity=0.130  Sum_probs=78.8

Q ss_pred             cCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh-hhccC
Q 018726          143 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL-NHSIM  221 (351)
Q Consensus       143 ~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~-~~~~~  221 (351)
                      ++|.+.++   ....+.+..|+++||-+...+|..|...+..|+.|..++......++.++.|+--.....++. .++..
T Consensus         9 ~~p~W~i~---~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r   85 (238)
T PF04592_consen    9 PPPPWKIG---GQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR   85 (238)
T ss_pred             CCCCceEC---CchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence            45666651   234567778999999999999999999999999999999875667888888886544433321 22221


Q ss_pred             CceeeccCc-h-hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          222 PWLAIPYED-R-ARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       222 ~~~~~~~~~-d-~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      --..+|+.. + ....++..++-.. =-++|+|+=|++++.
T Consensus        86 ~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~  125 (238)
T PF04592_consen   86 VSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH  125 (238)
T ss_pred             CCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence            113355543 2 3456777766443 347899999999987

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0015  Score=55.47  Aligned_cols=70  Identities=14%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +++.+++.||+.||.+|.++...+..+.+.++.       +.+++.+.+.                     ..+++..+.
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-------~~~~k~~a~~---------------------~~eis~~~~   67 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-------AQFLKLEAEE---------------------FPEISNLIA   67 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-------heeeeehhhh---------------------hhHHHHHHH
Confidence            678999999999999999999999888887742       4444444332                     468899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+.|++.++ ..|+.+.+
T Consensus        68 v~~vp~~~~~-~~~~~v~~   85 (227)
T KOG0911|consen   68 VEAVPYFVFF-FLGEKVDR   85 (227)
T ss_pred             HhcCceeeee-ecchhhhh
Confidence            9999999888 56665554

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.63  E-value=0.00046  Score=43.95  Aligned_cols=31  Identities=35%  Similarity=0.747  Sum_probs=24.7

Q ss_pred             ceeeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726          315 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       315 ~~~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .+.||.|+. ...|-+|+|..|. |||...|-.
T Consensus         4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~   36 (46)
T PF00569_consen    4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS   36 (46)
T ss_dssp             SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred             CeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence            578999999 7789999999999 999999954

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.61  E-value=0.0073  Score=46.85  Aligned_cols=64  Identities=19%  Similarity=0.472  Sum_probs=40.8

Q ss_pred             CCCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-----C-hhhHHH--HHhcCCceee
Q 018726           40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----D-ENGFEE--HFKCMPWLAV  104 (351)
Q Consensus        40 ~~gk~v~v~F~a-------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-----~-~~~~~~--~~~~~~~~~~  104 (351)
                      ..|++++|.|++       +|||.|+...|.+++..+...+.   ..++.+.+..     + .+.++.  .++...+||+
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTL   93 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTL   93 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE---HHHHC-TTSHHHH--CC---SSSEE
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCCHHHhCCCCCCceEcceeeeeecceE
Confidence            467899999986       49999999999999988875443   5666666642     1 123555  3556667787


Q ss_pred             ec
Q 018726          105 PF  106 (351)
Q Consensus       105 ~~  106 (351)
                      ..
T Consensus        94 i~   95 (119)
T PF06110_consen   94 IR   95 (119)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

; PDB: 1V9W_A 1WOU_A.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0026  Score=53.64  Aligned_cols=47  Identities=19%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      +...+.+.|+|.|+|.|.+.|+.+.|.+.++..+|+..+  ..+-.|++
T Consensus       139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDi  185 (265)
T KOG0914|consen  139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDI  185 (265)
T ss_pred             hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC--Ccccceee
Confidence            444577899999999999999999999999999998876  34444444

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0078  Score=59.43  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             eeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726          156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA  232 (351)
Q Consensus       156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~  232 (351)
                      +..+.-.+|+++|....+||..|..+...=   .++++-+++      .+|-|.+|+++              -|..+..
T Consensus        36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDREE--------------RPDvD~~   95 (667)
T COG1331          36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDREE--------------RPDVDSL   95 (667)
T ss_pred             HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeEChhh--------------ccCHHHH
Confidence            344445689999999999999999987421   233333332      48888888764              2222222


Q ss_pred             hHHHHHHcC-cCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHH
Q 018726          233 RQDLCRIFN-IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK  289 (351)
Q Consensus       233 ~~~~~~~~~-i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~  289 (351)
                      ...+++... --|+|-++|+-|+|+..+...  ....-+-...|...+.++.+.+.++
T Consensus        96 Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagT--Y~P~e~r~g~pGf~~lL~~i~~~W~  151 (667)
T COG1331          96 YMNASQAITGQGGWPLTVFLTPDGKPFFAGT--YFPKEDRYGRPGFKQLLEAIRETWR  151 (667)
T ss_pred             HHHHHHHhccCCCCceeEEECCCCceeeeee--ecCCcccCCCcCHHHHHHHHHHHHH
Confidence            334444443 347999999999999987531  1112222223444455555544444

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.44  E-value=0.0095  Score=41.36  Aligned_cols=54  Identities=20%  Similarity=0.262  Sum_probs=35.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH---hcCCceeeecCh
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF---KCMPWLAVPFDE  108 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~---~~~~~~~~~~~~  108 (351)
                      ++.|+++||++|.++...+.+       .+  +.+..+++|.+.....++.   ....+|++..++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~   58 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD   58 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence            577899999999998777664       23  5567777776543333222   344577776655

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.42  E-value=0.0066  Score=43.62  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|.++|||+|......|.++..        .+.++-++.+.+..+.                  ...+.+..|..++|
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~--------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P   55 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV--------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVP   55 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC--------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence            477899999999998888866533        3456666665431111                  13466677889999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      .+++
T Consensus        56 ~v~~   59 (82)
T cd03419          56 NVFI   59 (82)
T ss_pred             eEEE
Confidence            9743

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=96.40  E-value=0.0022  Score=41.34  Aligned_cols=29  Identities=31%  Similarity=0.742  Sum_probs=26.4

Q ss_pred             eeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726          317 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       317 ~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .|+.|++ ...|.+|+|.+|. |||...|-.
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~   32 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYT   32 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHh
Confidence            5999999 7889999999999 999999954

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=96.32  E-value=0.0027  Score=40.98  Aligned_cols=29  Identities=31%  Similarity=0.744  Sum_probs=25.8

Q ss_pred             eecccc-CCCceEEEEcCCCC-CCCCccccC
Q 018726          317 VCDCCK-MRGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       317 ~Cd~C~-~~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      .||.|+ ....|.+|+|.+|. |||...|-.
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~   32 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYD   32 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHh
Confidence            599999 57889999999998 999999954

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=96.31  E-value=0.015  Score=41.31  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=41.2

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChH
Q 018726           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      |.+++++|+.|..+...++++++.+.     +.+-.+++ .+.+.+ ..++.+..|++..||+
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~~~~-~~ygv~~vPalvIng~   58 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDFEEI-EKYGVMSVPALVINGK   58 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTHHHH-HHTT-SSSSEEEETTE
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCHHHH-HHcCCCCCCEEEECCE
Confidence            34467889999999999999888763     45555565 444455 7788899999988875

...

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.29  E-value=0.029  Score=42.29  Aligned_cols=75  Identities=16%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      .++++|+=.++.||........+++.++...    .++.+..+.+-...                   +.+..+++.|||
T Consensus        19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~----~~~~~y~l~v~~~R-------------------~vSn~IAe~~~V   75 (105)
T PF11009_consen   19 EKPVLIFKHSTRCPISAMALREFEKFWEESP----DEIPVYYLDVIEYR-------------------PVSNAIAEDFGV   75 (105)
T ss_dssp             -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred             cCcEEEEEeCCCChhhHHHHHHHHHHhhcCC----ccceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence            5788888899999999999888888888775    33778888775432                   226799999999


Q ss_pred             Cc-eeeEEEECCCCceEecc
Q 018726          243 KG-IPALVLIGPDGKTISTN  261 (351)
Q Consensus       243 ~~-~P~~~lid~~G~v~~~~  261 (351)
                      .. -|-+++| ++|++++..
T Consensus        76 ~HeSPQ~ili-~~g~~v~~a   94 (105)
T PF11009_consen   76 KHESPQVILI-KNGKVVWHA   94 (105)
T ss_dssp             ---SSEEEEE-ETTEEEEEE
T ss_pred             CcCCCcEEEE-ECCEEEEEC
Confidence            75 8999999 999999863

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.014  Score=47.23  Aligned_cols=65  Identities=28%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             cCcce-eeCCCCc-ccccCCCC-CeEEEEEeCCCC-hhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGG-KTICLFFSANWC-RPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~g-k~v~v~F~a~wC-~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      .-+++ |++.+|+ +++....| |+|+++||..-. |-|.+..--|.+-|++++..+  .+++.++.|...
T Consensus        68 ~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~  136 (211)
T KOG0855|consen   68 AIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSA  136 (211)
T ss_pred             cCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchH
Confidence            44555 9999999 99999865 588888887444 449999999999999999877  789999998644

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=96.25  E-value=0.063  Score=47.55  Aligned_cols=135  Identities=14%  Similarity=0.163  Sum_probs=77.3

Q ss_pred             hccCCCcEe-cCCCcceeecc-cCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH-HHHHh
Q 018726          141 AIEGRDYVL-SRDHRKITVSE-LAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-KEFDL  216 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~-~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~  216 (351)
                      ..--|++.. ++.|+.+++.+ ++||+.||..+.+ |-..|..  .......++|.......++++-|++.... ..+..
T Consensus        98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~--sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~  175 (252)
T PF05176_consen   98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVD--SWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV  175 (252)
T ss_pred             CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHH--HHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence            334688887 88888887754 5899766655443 3222221  12234445554312238999999987654 22221


Q ss_pred             h-h-----ccCC---ceeeccCch--hhHHHHHHcCcC--ceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHH
Q 018726          217 N-H-----SIMP---WLAIPYEDR--ARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAE  283 (351)
Q Consensus       217 ~-~-----~~~~---~~~~~~~~d--~~~~~~~~~~i~--~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~  283 (351)
                      . +     +..+   |..+-+..+  ....+.+.+++.  -+..+||+|++|+|++..       .|    +-++++++.
T Consensus       176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag-------sG----~At~~E~~~  244 (252)
T PF05176_consen  176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG-------SG----PATPEELES  244 (252)
T ss_pred             HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc-------cC----CCCHHHHHH
Confidence            1 1     1112   222211111  246788888885  478899999999999984       33    224555666


Q ss_pred             HHHHH
Q 018726          284 IETAL  288 (351)
Q Consensus       284 l~~~~  288 (351)
                      |.+-+
T Consensus       245 L~k~~  249 (252)
T PF05176_consen  245 LWKCV  249 (252)
T ss_pred             HHHHH
Confidence            64433

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.24  E-value=0.0085  Score=43.03  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=35.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhH----HHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF----EEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~----~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|+++|||+|....+.+.++...       +.++-++.+.+....    .+..+...+|.+..+|.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK-------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC-------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence            4779999999999999888874331       455555555442222    22233445666655654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.19  E-value=0.041  Score=37.84  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=39.8

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|.++||++|+.....|.+.          ++.+..++++.+.+.                   ...+.+..+...+|
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P   52 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGEL-------------------REELKELSGWPTVP   52 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence            5678899999999988877654          244666666654310                   24555666778899


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      ++++   +|+.+
T Consensus        53 ~~~~---~~~~i   61 (72)
T cd02066          53 QIFI---NGEFI   61 (72)
T ss_pred             EEEE---CCEEE
Confidence            8754   45544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.16  E-value=0.029  Score=38.85  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++||++|......|.+          .++.+..++++.+...                   ...+.+..++.++|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~----------~~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP   52 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE----------RGIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVP   52 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH----------CCCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccC
Confidence            568899999999987766644          2344556666654211                   12333444778999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      ++++
T Consensus        53 ~i~~   56 (73)
T cd02976          53 VVVI   56 (73)
T ss_pred             EEEE
Confidence            9875

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.12  E-value=0.014  Score=42.58  Aligned_cols=60  Identities=18%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc--Cc
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI--KG  244 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i--~~  244 (351)
                      ++.|..+|||+|.+....|+++..++     .++.+..++++.+..+                   ..++.+.++-  ..
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~-----~~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~t   57 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER-----ADFEFRYIDIHAEGIS-------------------KADLEKTVGKPVET   57 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc-----CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCC
Confidence            57889999999999888887764432     2345555666543211                   2345556663  78


Q ss_pred             eeeEEE
Q 018726          245 IPALVL  250 (351)
Q Consensus       245 ~P~~~l  250 (351)
                      +|.+++
T Consensus        58 VP~ifi   63 (86)
T TIGR02183        58 VPQIFV   63 (86)
T ss_pred             cCeEEE
Confidence            999854

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.032  Score=46.67  Aligned_cols=53  Identities=32%  Similarity=0.458  Sum_probs=47.0

Q ss_pred             ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           35 VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ++++++.||.+++.||. +.-.-|......+.+.|+++++.|  ++++.+|+|...
T Consensus        26 i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~f   79 (194)
T COG0450          26 ITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVF   79 (194)
T ss_pred             EechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHH
Confidence            88899888999999997 555669999999999999999998  899999999754

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.00  E-value=0.013  Score=40.44  Aligned_cols=55  Identities=22%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH---hcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF---KCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~---~~~~~~~~~~~~~  109 (351)
                      ++.|+++||++|++..+.+.+..         +.+..++++.+.+......   ....+|++..++.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIFINGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            56788999999999998887632         4566777776654322222   2233455555553

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=95.86  E-value=0.0027  Score=39.17  Aligned_cols=29  Identities=38%  Similarity=0.887  Sum_probs=25.0

Q ss_pred             eeeccccCCCceEEEEcCCCC-CCCCccccC
Q 018726          316 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       316 ~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      |.||.|... .|-+|+|.+|. |||...|-.
T Consensus         1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~   30 (41)
T cd02337           1 YTCNECKHH-VETRWHCTVCEDYDLCITCYN   30 (41)
T ss_pred             CcCCCCCCc-CCCceECCCCcchhhHHHHhC
Confidence            579999884 46999999996 999999965

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=95.86  E-value=0.015  Score=51.43  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh----------hHHHHHhcCCceeeec
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN----------GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~----------~~~~~~~~~~~~~~~~  106 (351)
                      +..+.++.-++.||.+-|+.|..+.|.++.+++++.     +.++.||+|....          ...+.++..-+|++.+
T Consensus       145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L  219 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL  219 (256)
T ss_pred             HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence            445577888999999999999999999999999874     7899999996421          2344455555666666

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.86  E-value=0.014  Score=51.45  Aligned_cols=46  Identities=20%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +.++.++.=|+.||.+.|+.|..+.|.++.+++++.     +.++.||+|.
T Consensus       138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG  183 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDG  183 (248)
T ss_pred             HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCC
Confidence            445567788999999999999999999999999874     7899999996

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.055  Score=43.12  Aligned_cols=117  Identities=14%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             hhhccCCCcEe-cCCC-------cceeecc-cCCcEEEE-EEecCCChhhHH-hHHHHHHHHHHhhcccCCce-EEEEEe
Q 018726          139 LLAIEGRDYVL-SRDH-------RKITVSE-LAGKTIGL-YFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVS  206 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g-------~~~~l~~-~~gk~vll-~F~a~~C~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~v~  206 (351)
                      .+|++.|+.++ ...+       ..++..+ ++||-|+| -.-+..-|.|-. .+|.+.+++++|++   .++ .|+.|+
T Consensus         4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~---kGVD~I~cVS   80 (165)
T COG0678           4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA---KGVDEIYCVS   80 (165)
T ss_pred             ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH---cCCceEEEEE
Confidence            45777887776 3311       2233333 36765443 333445566766 88999999999987   444 577778


Q ss_pred             CCCCH--HHHHhhhccCCceeeccCchhhHHHHHHcCc-----------CceeeEEEECCCCceEecc
Q 018726          207 TDRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       207 ~d~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i-----------~~~P~~~lid~~G~v~~~~  261 (351)
                      +++.-  .+|.+.....+  .+.+..|.+.++.+.+|.           ++.....++ .||.|..-+
T Consensus        81 VND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~  145 (165)
T COG0678          81 VNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF  145 (165)
T ss_pred             eCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence            77532  45555554442  455566667788887653           556677788 788887653

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.67  E-value=0.022  Score=46.02  Aligned_cols=41  Identities=27%  Similarity=0.491  Sum_probs=33.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      +++++++.|+.++||+|+++.|.+.++..++. +   +.+++..+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~---~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-D---VRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-C---ceEEEEeC
Confidence            57899999999999999999999999887653 2   45665544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.031  Score=42.66  Aligned_cols=43  Identities=21%  Similarity=0.541  Sum_probs=32.9

Q ss_pred             CCCeEEEEEeC--------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           41 GGKTICLFFSA--------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        41 ~gk~v~v~F~a--------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +|+.+++.|++        +|||.|.+..|.+.+..+.....   +.++.+.+-
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG   74 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVG   74 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEec
Confidence            67789999987        59999999999999988855443   455555553

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=95.55  E-value=0.15  Score=42.62  Aligned_cols=151  Identities=14%  Similarity=0.112  Sum_probs=87.0

Q ss_pred             hhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHH-HHHHhhh-hhhhHHhhhcccccccc
Q 018726           59 TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETL-HKKLRIR-KRREELKAIDDSKRQGG  134 (351)
Q Consensus        59 ~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~~-~~~~~l~~~~~~~~~~~  134 (351)
                      .....+.++|+.+.+.   +.+..+.   +. .+.+.++.-. |++..  .++. ...+.+. ...+.+..++...    
T Consensus         7 ~~~~~f~~~A~~~~~~---~~F~~~~---~~-~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~----   74 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGD---YQFGVTF---NE-ELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN----   74 (184)
T ss_dssp             HHHHHHHHHHHHHTTT---SEEEEEE----H-HHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhCcCC---cEEEEEc---HH-HHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh----
Confidence            4566888999998866   4454444   22 2333344322 55554  3222 2233332 3455555554432    


Q ss_pred             chHHhhhccCCCcEecCCCcceeecccCCcE-EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          135 KLEQLLAIEGRDYVLSRDHRKITVSELAGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       135 ~~~~~~g~~~pdf~~~~~g~~~~l~~~~gk~-vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                              ..|-+. ..+...+..---.++. +++.|..............+.+++++++    ..+.++.+..+..   
T Consensus        75 --------~~P~v~-~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~~f~~~d~~~~---  138 (184)
T PF13848_consen   75 --------SFPLVP-ELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK----GKINFVYVDADDF---  138 (184)
T ss_dssp             --------SSTSCE-EESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT----TTSEEEEEETTTT---
T ss_pred             --------cccccc-ccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC----CeEEEEEeehHHh---
Confidence                    223333 2223222221123444 7777766655567777778888888776    5678888887743   


Q ss_pred             HHhhhccCCceeeccCchhhHHHHHHcCcC--ceeeEEEECCCCce
Q 018726          214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKT  257 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~--~~P~~~lid~~G~v  257 (351)
                                          ..+.+.||+.  .+|++++++.....
T Consensus       139 --------------------~~~~~~~~i~~~~~P~~vi~~~~~~~  164 (184)
T PF13848_consen  139 --------------------PRLLKYFGIDEDDLPALVIFDSNKGK  164 (184)
T ss_dssp             --------------------HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred             --------------------HHHHHHcCCCCccCCEEEEEECCCCc
Confidence                                5677899998  89999999855443

...

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=95.55  E-value=0.054  Score=46.01  Aligned_cols=110  Identities=19%  Similarity=0.388  Sum_probs=75.5

Q ss_pred             CCcEecCCCcceeeccc-CCcEEEE--EEe-----cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          145 RDYVLSRDHRKITVSEL-AGKTIGL--YFG-----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       145 pdf~~~~~g~~~~l~~~-~gk~vll--~F~-----a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .++.++....+++|+++ .|+-.||  .|.     ...|+-|-..+..++.....+.+   .++.++.|+-. ..+++..
T Consensus        47 ~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~---rd~tfa~vSra-P~~~i~a  122 (211)
T PF05988_consen   47 KDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA---RDTTFAVVSRA-PLEKIEA  122 (211)
T ss_pred             CCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh---CCceEEEEeCC-CHHHHHH
Confidence            45777444445888886 6664333  332     45799999999999777777776   77889888765 5688888


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCc-----CceeeEEEECCCC-ceEe
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDG-KTIS  259 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i-----~~~P~~~lid~~G-~v~~  259 (351)
                      +.+.++|. +|........+...|++     ...|.+-++=++| +|..
T Consensus       123 fk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh  170 (211)
T PF05988_consen  123 FKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH  170 (211)
T ss_pred             HHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEE
Confidence            99999987 77665555666777776     4566554443544 4443

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=95.46  E-value=0.068  Score=38.19  Aligned_cols=57  Identities=16%  Similarity=0.317  Sum_probs=38.0

Q ss_pred             cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726          164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  243 (351)
Q Consensus       164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  243 (351)
                      +.-++.|..+||++|.+....|++          .++.+..++++.+..                    ...+.+..|..
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~----------~gi~y~~idi~~~~~--------------------~~~~~~~~g~~   56 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKE----------KGYDFEEIPLGNDAR--------------------GRSLRAVTGAT   56 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHH----------cCCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence            445678999999999998777743          234444556654421                    13455567889


Q ss_pred             ceeeEEE
Q 018726          244 GIPALVL  250 (351)
Q Consensus       244 ~~P~~~l  250 (351)
                      .+|.+++
T Consensus        57 ~vP~i~i   63 (79)
T TIGR02190        57 TVPQVFI   63 (79)
T ss_pred             CcCeEEE
Confidence            9999864

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.43  E-value=0.092  Score=36.82  Aligned_cols=55  Identities=15%  Similarity=0.238  Sum_probs=34.8

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC-ce
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-GI  245 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-~~  245 (351)
                      +..|+.++||+|......|++          .++.+-.++++.+.+.                   ...+.+..+.. .+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~v   52 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK----------KGVDYEEIDVDGDPAL-------------------REEMINRSGGRRTV   52 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH----------CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcc
Confidence            467889999999998776654          2334555566544211                   23455566766 89


Q ss_pred             eeEEE
Q 018726          246 PALVL  250 (351)
Q Consensus       246 P~~~l  250 (351)
                      |.+++
T Consensus        53 P~v~i   57 (75)
T cd03418          53 PQIFI   57 (75)
T ss_pred             CEEEE
Confidence            97653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=95.40  E-value=0.028  Score=41.02  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHhc--CCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFKC--MPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~~--~~~~~~~~~~~  109 (351)
                      ++.|..+||++|.+....+.++.....  +  +.+..++++.+.   +.+.+..+.  ...|++..+++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~   66 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEK   66 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCE
Confidence            567889999999999988887654321  2  456666666433   224444443  56688866654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=95.36  E-value=0.11  Score=36.30  Aligned_cols=53  Identities=15%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceee
Q 018726          168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  247 (351)
Q Consensus       168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  247 (351)
                      ..|..++||+|+.....|++          .++.+-.++++.+...                   ...+ +..|...+|.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~   51 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE----------HGIAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPV   51 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCcccCE
Confidence            46788999999998777753          3345555666654311                   1222 2348888999


Q ss_pred             EEE
Q 018726          248 LVL  250 (351)
Q Consensus       248 ~~l  250 (351)
                      +++
T Consensus        52 v~~   54 (72)
T TIGR02194        52 IVA   54 (72)
T ss_pred             EEE
Confidence            755

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PHA03050 glutaredoxin; Provisional

Probab=95.36  E-value=0.044  Score=41.89  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=36.6

Q ss_pred             EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726          166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  245 (351)
Q Consensus       166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  245 (351)
                      -++.|..+|||+|......|++..-+.     ..++++-|.-..+..+                  ....+.+.-|...+
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tV   70 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTV   70 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCc
Confidence            367899999999998877665542111     1344444332111111                  12466666788899


Q ss_pred             eeEEE
Q 018726          246 PALVL  250 (351)
Q Consensus       246 P~~~l  250 (351)
                      |.+++
T Consensus        71 P~IfI   75 (108)
T PHA03050         71 PRIFF   75 (108)
T ss_pred             CEEEE
Confidence            99855

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.36  E-value=0.04  Score=44.48  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=28.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhh
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK  193 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~  193 (351)
                      .++++++.|+..+||+|+.+.+.+.++..++.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            36899999999999999999999998877653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.19  E-value=0.082  Score=39.69  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=16.8

Q ss_pred             EEEEecCCChhhHHhHHHHHH
Q 018726          167 GLYFGAHWCPPCRSFTSQLIE  187 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~  187 (351)
                      ++.|..+|||+|.+....|.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~   30 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT   30 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH
Confidence            568889999999987765544

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.18  E-value=0.0021  Score=54.89  Aligned_cols=78  Identities=14%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      +|. +++.|+|+||+.|....|++...+.--.+.+  +++..|.+..+.--..++ -+...|++..  ||. .+++.+..
T Consensus        39 ~ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~npgLsGRF-~vtaLptIYHvkDGe-FrrysgaR  113 (248)
T KOG0913|consen   39 TGE-WMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTNPGLSGRF-LVTALPTIYHVKDGE-FRRYSGAR  113 (248)
T ss_pred             chH-HHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEeccccceee-EEEecceEEEeeccc-cccccCcc
Confidence            453 6899999999999999999999888655544  666666665443223333 3344567766  554 44555544


Q ss_pred             hhhHH
Q 018726          119 RREEL  123 (351)
Q Consensus       119 ~~~~l  123 (351)
                      .-+.+
T Consensus       114 dk~df  118 (248)
T KOG0913|consen  114 DKNDF  118 (248)
T ss_pred             cchhH
Confidence            43333

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.11  E-value=0.1  Score=42.54  Aligned_cols=49  Identities=14%  Similarity=0.227  Sum_probs=38.5

Q ss_pred             ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       158 l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      +-+..++++|+.|+...||+|..+.+.+.++.+++-+  ..++.++...+-
T Consensus         7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~--~~~v~~~~~~~~   55 (162)
T PF13462_consen    7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID--PGKVKFVFRPVP   55 (162)
T ss_dssp             ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEESS
T ss_pred             ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC--CCceEEEEEEcc
Confidence            4444578999999999999999999999999999821  267888888763

...

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=95.10  E-value=0.13  Score=36.00  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=36.1

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|..+||+.|++....|++          .++.+..++++.+...                   ..++.+..+-..+|
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~----------~gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP   53 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE----------KGLPYVEINIDIFPER-------------------KAELEERTGSSVVP   53 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence            457888999999998776654          3344556666654311                   24566666777889


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      .+++
T Consensus        54 ~v~i   57 (73)
T cd03027          54 QIFF   57 (73)
T ss_pred             EEEE
Confidence            8754

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=95.00  E-value=0.028  Score=40.14  Aligned_cols=55  Identities=15%  Similarity=0.311  Sum_probs=34.9

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +..|+.+|||+|......|++.          ++.+-.++++.+...                   ..++.+..|...+|
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP   51 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVP   51 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHH-------------------HHHHHHHhCCCCcC
Confidence            3578899999999988777542          233444455544211                   23455566788899


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      ++++
T Consensus        52 ~i~i   55 (79)
T TIGR02181        52 QIFI   55 (79)
T ss_pred             EEEE
Confidence            9744

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.90  E-value=0.094  Score=42.82  Aligned_cols=53  Identities=17%  Similarity=0.308  Sum_probs=40.7

Q ss_pred             cccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        36 ~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      .+.....+++|+.|+...|++|..+.+.+.++.+++-+.| .+.+++..+-.+.
T Consensus         6 ~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~   58 (162)
T PF13462_consen    6 TIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDK   58 (162)
T ss_dssp             EES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSH
T ss_pred             eecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccc
Confidence            3445578999999999999999999999999999983332 3888888875443

...

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=94.90  E-value=0.051  Score=38.71  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH---HhcCCceeeecChH
Q 018726           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH---FKCMPWLAVPFDET  109 (351)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~---~~~~~~~~~~~~~~  109 (351)
                      ..|+.+||++|.+....+++       .|  +.+..++++.+.....+.   .....+|++..+|+
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~   58 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDV   58 (79)
T ss_pred             EEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            56888999999998888874       23  456667777665433333   33455677766664

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG3414 consensus Component of the U4/U6

Probab=94.85  E-value=0.26  Score=38.05  Aligned_cols=63  Identities=17%  Similarity=0.485  Sum_probs=51.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ..|.++|-|.-.|-|.|.++-..|.++++...    .=..|..+.+|.                       -..+-+.|+
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs----nfa~Iylvdide-----------------------V~~~~~~~~   74 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVS----NFAVIYLVDIDE-----------------------VPDFVKMYE   74 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHh----hceEEEEEecch-----------------------hhhhhhhhc
Confidence            45899999999999999999999999999886    334566666664                       367788899


Q ss_pred             cCceeeEEEE
Q 018726          242 IKGIPALVLI  251 (351)
Q Consensus       242 i~~~P~~~li  251 (351)
                      +...|+++++
T Consensus        75 l~~p~tvmfF   84 (142)
T KOG3414|consen   75 LYDPPTVMFF   84 (142)
T ss_pred             ccCCceEEEE
Confidence            9998987776

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=94.82  E-value=0.077  Score=37.20  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=36.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh---HHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~---~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|..+||+.|++....|++       .|  +.+..++++.+.+.   +.+.......|++.++++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~   60 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK   60 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            456888999999998877775       33  56777788765543   333333444577766664

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=94.81  E-value=0.012  Score=52.96  Aligned_cols=32  Identities=34%  Similarity=0.719  Sum_probs=29.3

Q ss_pred             ceeeccccC-CCceEEEEcCCCC-CCCCccccCc
Q 018726          315 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG  346 (351)
Q Consensus       315 ~~~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~~  346 (351)
                      .-.||.|.. ...|-+|+|.+|. |||+..|-.+
T Consensus       152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~  185 (278)
T KOG4582|consen  152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG  185 (278)
T ss_pred             cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence            468999999 8999999999998 9999999664

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=94.79  E-value=0.061  Score=38.44  Aligned_cols=56  Identities=16%  Similarity=0.241  Sum_probs=35.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh--HHHHHhcCCceeeecChH
Q 018726           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG--FEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~--~~~~~~~~~~~~~~~~~~  109 (351)
                      -++.|+.+||++|++....|.+       .|  +.+..++++.+...  +.+.......|.+..+|.
T Consensus         9 ~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~   66 (79)
T TIGR02190         9 SVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGK   66 (79)
T ss_pred             CEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence            3668999999999998888763       23  45556677655332  333233455677766654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.78  E-value=0.081  Score=37.10  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH---hcC-CceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF---KCM-PWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~---~~~-~~~~~~~~~~  109 (351)
                      +..|+.+||++|.+....|++       .+  +.+..++++.+.+...+..   ... .+|.+..+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence            467888999999998877765       23  5566777776644333332   333 5677766654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=94.65  E-value=0.022  Score=37.26  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=28.1

Q ss_pred             CCceeeccccCCC---ceEEEEcCCCCCCCCccccCcc
Q 018726          313 AKAYVCDCCKMRG---RFWAFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       313 ~~~~~Cd~C~~~~---~~~~~~c~~~~~~~~~~c~~~~  347 (351)
                      ..+..|+.|++..   ..-.|+|..|++-.|..|....
T Consensus         9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~   46 (53)
T PF00130_consen    9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV   46 (53)
T ss_dssp             SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred             CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence            4667999999975   6779999999999999998743

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=94.61  E-value=0.016  Score=49.59  Aligned_cols=69  Identities=22%  Similarity=0.410  Sum_probs=51.2

Q ss_pred             EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726          165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      -+++.|+++|||.|....|.+...+.--.+   -++.+..|.+-..                       .-+.-+|-+.+
T Consensus        41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~n-----------------------pgLsGRF~vta   94 (248)
T KOG0913|consen   41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTTN-----------------------PGLSGRFLVTA   94 (248)
T ss_pred             HHHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEec-----------------------cccceeeEEEe
Confidence            577899999999999999998777554332   4555555554432                       35666788899


Q ss_pred             eeeEEEECCCCceEec
Q 018726          245 IPALVLIGPDGKTIST  260 (351)
Q Consensus       245 ~P~~~lid~~G~v~~~  260 (351)
                      .||+|=+ ++|..+..
T Consensus        95 LptIYHv-kDGeFrry  109 (248)
T KOG0913|consen   95 LPTIYHV-KDGEFRRY  109 (248)
T ss_pred             cceEEEe-eccccccc
Confidence            9999999 89987643

>PHA03050 glutaredoxin; Provisional

Probab=94.25  E-value=0.27  Score=37.52  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=33.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC--Chhh----HHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENG----FEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~--~~~~----~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|..+|||+|.+....|.+.    +-...  .+..+++|.  +...    +.+.......|.+.++|+
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~----~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~   78 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKF----SFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKT   78 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHc----CCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCE
Confidence            6679999999999988777653    21111  344556654  2222    333333344677766554

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.13  Score=35.74  Aligned_cols=70  Identities=24%  Similarity=0.378  Sum_probs=44.5

Q ss_pred             EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc---cCCceeeccCchhhHHHHHHcCcCc
Q 018726          168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      ..|++..||.|......|.++.          +..=.|.+-.+-+.+++|++   +++          .-+-.+..|--|
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~----------v~yd~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiG   64 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLN----------VDYDFVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIG   64 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcC----------CCceeeehhhhhhhHHHHHhhhccch----------hHHhhhhcCccc
Confidence            5789999999987766554442          22333444455556666655   333          234456778889


Q ss_pred             eeeEEEECCCCceEe
Q 018726          245 IPALVLIGPDGKTIS  259 (351)
Q Consensus       245 ~P~~~lid~~G~v~~  259 (351)
                      +|.+.+  .+|++|-
T Consensus        65 IPall~--~d~~vVl   77 (85)
T COG4545          65 IPALLT--DDGKVVL   77 (85)
T ss_pred             ceEEEe--CCCcEEE
Confidence            999776  6788764

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=94.01  E-value=0.13  Score=35.89  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH--hcCCceeeecChH
Q 018726           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF--KCMPWLAVPFDET  109 (351)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~--~~~~~~~~~~~~~  109 (351)
                      ..|..++|++|++....|.+       .|  +.+..++++.+.+...+..  .....|.+..+|+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~   57 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD   57 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence            46778999999998888864       33  5677778876654433332  2234566655553

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10824 glutaredoxin-4; Provisional

Probab=93.93  E-value=0.22  Score=38.39  Aligned_cols=46  Identities=15%  Similarity=0.176  Sum_probs=27.2

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           52 NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        52 ~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      ||||.|++....|.++       +  +.+..++++.+.+......+..+|+|+|-
T Consensus        28 p~Cpyc~~ak~lL~~~-------~--i~~~~idi~~d~~~~~~l~~~sg~~TVPQ   73 (115)
T PRK10824         28 PSCGFSAQAVQALSAC-------G--ERFAYVDILQNPDIRAELPKYANWPTFPQ   73 (115)
T ss_pred             CCCchHHHHHHHHHHc-------C--CCceEEEecCCHHHHHHHHHHhCCCCCCe
Confidence            5999999988777663       2  33445677766443222233345555554

>PRK10329 glutaredoxin-like protein; Provisional

Probab=93.92  E-value=0.17  Score=36.47  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH--hcCCceeeecCh
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF--KCMPWLAVPFDE  108 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~--~~~~~~~~~~~~  108 (351)
                      +..|..+||++|.+....|.+       .|  +.+..++++.+.+...+..  .....|++..++
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~   58 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD   58 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence            567888999999998877743       44  6677788887654433332  223346665544

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=93.91  E-value=0.14  Score=35.71  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=35.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|..+||+.|.+....+.+       .|  +.+..++++.+..  .+.+......+|.+..+|+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~   59 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence            567888999999998777764       23  4566667765542  2333334556788766664

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=93.90  E-value=0.1  Score=36.41  Aligned_cols=53  Identities=17%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|..+|||.|.+....|++          .++.+..++++.+..                    ...+.+..|...+|
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~----------~~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP   52 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE----------NGISYEEIPLGKDIT--------------------GRSLRAVTGAMTVP   52 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----------cCCCcEEEECCCChh--------------------HHHHHHHhCCCCcC
Confidence            567889999999998766653          234455556654320                    13455556888999


Q ss_pred             eEE
Q 018726          247 ALV  249 (351)
Q Consensus       247 ~~~  249 (351)
                      .++
T Consensus        53 ~if   55 (72)
T cd03029          53 QVF   55 (72)
T ss_pred             eEE
Confidence            974

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=93.88  E-value=0.37  Score=34.66  Aligned_cols=54  Identities=13%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +..|..+||++|......|.+          .++.+-.++++.+.+.                    ....+..|...+|
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~----------~gI~~~~idi~~~~~~--------------------~~~~~~~g~~~vP   52 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES----------RGFDFEMINVDRVPEA--------------------AETLRAQGFRQLP   52 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH----------CCCceEEEECCCCHHH--------------------HHHHHHcCCCCcC
Confidence            457888999999987666632          4456666777754311                    1122334778899


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      ++++
T Consensus        53 vv~i   56 (81)
T PRK10329         53 VVIA   56 (81)
T ss_pred             EEEE
Confidence            9865

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=93.77  E-value=0.087  Score=43.81  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=34.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      .+++.++.|+...||+|+.+.+.+.++.+++.++   +.+..+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcCC
Confidence            6899999999999999999999999999987443   45544443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.62  E-value=0.12  Score=43.81  Aligned_cols=93  Identities=23%  Similarity=0.437  Sum_probs=64.0

Q ss_pred             CCcEecCCCcceeeccc-CCcEEEE---EEecC----CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          145 RDYVLSRDHRKITVSEL-AGKTIGL---YFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       145 pdf~~~~~g~~~~l~~~-~gk~vll---~F~a~----~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .++.++....+.+|+++ .||-.||   +++++    .|+-|-..+..+......+..   .++.++.|+-- ..+++..
T Consensus        53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~---~dv~lv~VsRA-Pl~~l~~  128 (247)
T COG4312          53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH---HDVTLVAVSRA-PLEELVA  128 (247)
T ss_pred             ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh---cCceEEEEecC-cHHHHHH
Confidence            35666444457788876 5664443   23444    699999999998877777776   77889888754 4678888


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCc
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +.+.|+|. +|........+.+.|++
T Consensus       129 ~k~rmGW~-f~w~Ss~~s~Fn~Df~v  153 (247)
T COG4312         129 YKRRMGWQ-FPWVSSTDSDFNRDFQV  153 (247)
T ss_pred             HHHhcCCc-ceeEeccCccccccccc
Confidence            88888886 66655444555566644

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=93.55  E-value=0.07  Score=46.26  Aligned_cols=64  Identities=9%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             cccCcce-eeCCCCc--ccccCCC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           21 ASEGVEF-LLSRQGK--VPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        21 ~~~~~~~-l~~~~g~--~~~~~~~--gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      .+..+++ ++..+|+  ..+.++.  ++|++|+|.+-.||+=+.-.+.+++++++|.+.   ++++.|.+.+
T Consensus        76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~E  144 (237)
T PF00837_consen   76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEE  144 (237)
T ss_pred             CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhh
Confidence            4455666 7788887  6677763  899999999999999999999999999999987   5677777664

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK10638 glutaredoxin 3; Provisional

Probab=93.50  E-value=0.4  Score=34.48  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +..|..+||++|++....|++.          ++.+..++++.+.+.                   ...+.+..|...+|
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP   54 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVP   54 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence            4577889999999887766542          233444566544211                   23455666788899


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      ++++   +|+.+
T Consensus        55 ~i~~---~g~~i   63 (83)
T PRK10638         55 QIFI---DAQHI   63 (83)
T ss_pred             EEEE---CCEEE
Confidence            7744   35544

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.40  E-value=0.28  Score=39.49  Aligned_cols=76  Identities=20%  Similarity=0.327  Sum_probs=52.7

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecC---------------ChhhHHHHHhcC
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH---------------DENGFEEHFKCM   99 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~---------------~~~~~~~~~~~~   99 (351)
                      ..-.+|..++.|..+.|+.|.++...+   .++.+-+++.   +.++.+++..               ..+..++.+++.
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr  114 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR  114 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence            345899999999999999999998765   4455555554   6666666532               122467778888


Q ss_pred             Cceeeec-C--hHHHHHHhh
Q 018726          100 PWLAVPF-D--ETLHKKLRI  116 (351)
Q Consensus       100 ~~~~~~~-~--~~~~~~l~~  116 (351)
                      ++|++.| +  |+....+-|
T Consensus       115 stPtfvFfdk~Gk~Il~lPG  134 (182)
T COG2143         115 STPTFVFFDKTGKTILELPG  134 (182)
T ss_pred             cCceEEEEcCCCCEEEecCC
Confidence            9999998 3  444444444

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=93.37  E-value=0.43  Score=35.62  Aligned_cols=58  Identities=21%  Similarity=0.183  Sum_probs=34.6

Q ss_pred             cEEEEEEe----cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          164 KTIGLYFG----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       164 k~vll~F~----a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      +.|+|+-.    .+|||+|......|.+.          ++.+..++++.+.+.                   ...+.+.
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~-------------------~~~l~~~   62 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEI-------------------RQGIKEY   62 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHH-------------------HHHHHHH
Confidence            44555543    38999999877666442          233445566544211                   2355566


Q ss_pred             cCcCceeeEEE
Q 018726          240 FNIKGIPALVL  250 (351)
Q Consensus       240 ~~i~~~P~~~l  250 (351)
                      .|...+|.+++
T Consensus        63 tg~~tvP~vfi   73 (97)
T TIGR00365        63 SNWPTIPQLYV   73 (97)
T ss_pred             hCCCCCCEEEE
Confidence            67788998864

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=93.35  E-value=0.2  Score=41.86  Aligned_cols=70  Identities=19%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +..-||+-||-+.-..|+-+-..|..+++.+-     ...+|.|+....                       .-+..+++
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-----eTrFikvnae~~-----------------------PFlv~kL~  134 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-----ETRFIKVNAEKA-----------------------PFLVTKLN  134 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-----cceEEEEecccC-----------------------ceeeeeee
Confidence            45678899999988889999999999988774     456777776653                       46788899


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |..+|++.++ ++|+.+.+
T Consensus       135 IkVLP~v~l~-k~g~~~D~  152 (211)
T KOG1672|consen  135 IKVLPTVALF-KNGKTVDY  152 (211)
T ss_pred             eeEeeeEEEE-EcCEEEEE
Confidence            9999999999 78876654

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=93.33  E-value=0.11  Score=38.22  Aligned_cols=59  Identities=19%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             CcEEEEEEec----CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          163 GKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       163 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ++.|+|+--+    +|||+|......|.+.          ++.+..++++.+.+                   ....+.+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~-------------------~~~~l~~   57 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEE-------------------VRQGLKE   57 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHH-------------------HHHHHHH
Confidence            4455555433    6999999877666543          23344455554321                   1246666


Q ss_pred             HcCcCceeeEEE
Q 018726          239 IFNIKGIPALVL  250 (351)
Q Consensus       239 ~~~i~~~P~~~l  250 (351)
                      ..|...+|.+++
T Consensus        58 ~~g~~tvP~vfi   69 (90)
T cd03028          58 YSNWPTFPQLYV   69 (90)
T ss_pred             HhCCCCCCEEEE
Confidence            678888999744

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>KOG3414 consensus Component of the U4/U6

Probab=93.15  E-value=0.45  Score=36.75  Aligned_cols=63  Identities=13%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (351)
                      +-+.|.|+|-|.-+|-+.|..+...+.+++++..+-   +.|..+.+|.-. .+.+.++-..-|++-
T Consensus        20 ~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-~~~~~~~l~~p~tvm   82 (142)
T KOG3414|consen   20 STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-DFVKMYELYDPPTVM   82 (142)
T ss_pred             cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-hhhhhhcccCCceEE
Confidence            346899999999999999999999999999998765   567777777433 455555544333333

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=93.14  E-value=0.28  Score=37.98  Aligned_cols=66  Identities=6%  Similarity=0.126  Sum_probs=41.9

Q ss_pred             ccccCCCCCeEEEEEeCC----CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHhcCCceeeec
Q 018726           35 VPLSSCGGKTICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~----wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~~~~~~~~~~  106 (351)
                      +..+.-++|+++|+|+++    ||..|+.... =.++.+-++.+     +++...|.+..   .++..++...+|++.+
T Consensus        10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~-----fv~w~~dv~~~eg~~la~~l~~~~~P~~~~   82 (116)
T cd02991          10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTR-----MLFWACSVAKPEGYRVSQALRERTYPFLAM   82 (116)
T ss_pred             HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcC-----EEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence            334456899999999999    8888977642 12333333332     55555554322   3666777777777776

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=93.11  E-value=0.065  Score=33.71  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             eeeccccCCCceEEEEcCCCC-CCCCccccC
Q 018726          316 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       316 ~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      |.|+.|+.....-+|||..+. |+|.+.|=.
T Consensus         1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~   31 (45)
T cd02336           1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ   31 (45)
T ss_pred             CcccCCCCccCceEEEecCCCccccChHHHh
Confidence            679999999999999999988 999999944

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=92.99  E-value=0.24  Score=37.16  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHHHh----cCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFK----CMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~~~----~~~~~~~~~~~~  109 (351)
                      ++.|..+|||+|.+....+.+       .+  +.+..+++|.+.+  ...+.+.    ...+|.+..+|+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~-------~~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~   70 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT-------LG--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK   70 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence            567889999999998876654       23  3455677765432  2333332    233466655654

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=92.78  E-value=0.27  Score=40.29  Aligned_cols=60  Identities=27%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +++..-+ ++++++.||+|++.||. ++---|....-.+.+.+.++++.+  -+++++++|...
T Consensus        18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~f   79 (196)
T KOG0852|consen   18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVF   79 (196)
T ss_pred             EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchh
Confidence            4454445 89999999999999995 555568899999999999999887  789999999754

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=92.77  E-value=0.62  Score=36.47  Aligned_cols=58  Identities=12%  Similarity=0.359  Sum_probs=43.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc-CCc
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC-MPW  101 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~-~~~  101 (351)
                      -+.|+|+|-|.-+|-+.|.++...+.+++++.+.-   ..|..++++.-. .+.+.++. -|.
T Consensus        18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-dfn~~yel~dP~   76 (133)
T PF02966_consen   18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-DFNQMYELYDPC   76 (133)
T ss_dssp             -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-CCHHHTTS-SSE
T ss_pred             cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-hhhcccccCCCe
Confidence            36899999999999999999999999999998765   567777777443 35555553 443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=92.64  E-value=2.4  Score=34.29  Aligned_cols=14  Identities=14%  Similarity=0.188  Sum_probs=10.7

Q ss_pred             CChhhHHhHHHHHH
Q 018726          174 WCPPCRSFTSQLIE  187 (351)
Q Consensus       174 ~C~~C~~~~~~l~~  187 (351)
                      +|++|......|++
T Consensus        15 t~~~C~~ak~iL~~   28 (147)
T cd03031          15 TFEDCNNVRAILES   28 (147)
T ss_pred             cChhHHHHHHHHHH
Confidence            89999887666644

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=92.63  E-value=0.4  Score=40.14  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=26.2

Q ss_pred             EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          169 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       169 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      .|..|.|+.|-...|.+.++..+++    ..+.+-.|..
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~----~~i~~~~i~~   36 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYG----NKIEFRFIPG   36 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-----TTEEEEEEE-
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcC----CcEEEEEEEc
Confidence            6889999999999999999999998    4566555553

>PRK10638 glutaredoxin 3; Provisional

Probab=92.63  E-value=0.28  Score=35.29  Aligned_cols=55  Identities=20%  Similarity=0.241  Sum_probs=33.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~  109 (351)
                      ++.|..+||++|++....+.+       .|  +.+..++++.+.+...+..+   ....|++..+|.
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~   61 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQ   61 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            456778999999998877774       23  45666777765433333333   233566655543

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=92.56  E-value=0.49  Score=33.95  Aligned_cols=56  Identities=29%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      |+.|..+.|+-|......|.++..+      ..+.+..|+++.+                       .++.++|+. .+|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~------~~~~l~~vDI~~d-----------------------~~l~~~Y~~-~IP   51 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE------FPFELEEVDIDED-----------------------PELFEKYGY-RIP   51 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT------STCEEEEEETTTT-----------------------HHHHHHSCT-STS
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh------cCceEEEEECCCC-----------------------HHHHHHhcC-CCC
Confidence            6788999999999988777665332      4578999999865                       568889995 789


Q ss_pred             eEEEEC
Q 018726          247 ALVLIG  252 (351)
Q Consensus       247 ~~~lid  252 (351)
                      .+.+-+
T Consensus        52 Vl~~~~   57 (81)
T PF05768_consen   52 VLHIDG   57 (81)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            876654

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=92.43  E-value=1.8  Score=43.23  Aligned_cols=70  Identities=19%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ..+++.+.|+.|+...|..|......|+++.+ +.    +.+.+.....+.                       +..+++
T Consensus       362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s----~~i~~~~~~~~~-----------------------~~~~~~  413 (555)
T TIGR03143       362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS----EKLNSEAVNRGE-----------------------EPESET  413 (555)
T ss_pred             HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC----CcEEEEEecccc-----------------------chhhHh
Confidence            35567788889999889899888777777753 32    556665554443                       367889


Q ss_pred             HcCcCceeeEEEECCCCc
Q 018726          239 IFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~  256 (351)
                      .|++...|++.+++.+|+
T Consensus       414 ~~~v~~~P~~~i~~~~~~  431 (555)
T TIGR03143       414 LPKITKLPTVALLDDDGN  431 (555)
T ss_pred             hcCCCcCCEEEEEeCCCc
Confidence            999999999999976653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=92.34  E-value=0.081  Score=33.92  Aligned_cols=34  Identities=26%  Similarity=0.621  Sum_probs=28.7

Q ss_pred             CceeeccccCCCce---EEEEcCCCCCCCCccccCcc
Q 018726          314 KAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       314 ~~~~Cd~C~~~~~~---~~~~c~~~~~~~~~~c~~~~  347 (351)
                      .+..|+.|.+...|   ..|+|+.|++-.|..|+...
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v   46 (50)
T cd00029          10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV   46 (50)
T ss_pred             CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence            45679999997554   89999999999999998754

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=91.64  E-value=0.17  Score=39.94  Aligned_cols=84  Identities=11%  Similarity=0.100  Sum_probs=53.4

Q ss_pred             CCeEEEEEeCC--CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           42 GKTICLFFSAN--WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        42 gk~v~v~F~a~--wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      +...+|.|-.+  -++-+....=.+.+++++|.+..  +.++.|++|.+. .++..++++.+|++.+  +|+...++.|.
T Consensus        34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~~-~LA~~fgV~siPTLl~FkdGk~v~~i~G~  110 (132)
T PRK11509         34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE-AIGDRFGVFRFPATLVFTGGNYRGVLNGI  110 (132)
T ss_pred             CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCCH-HHHHHcCCccCCEEEEEECCEEEEEEeCc
Confidence            33444444432  24557777778999999986321  455555555443 5777788888888887  88887777775


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                      ..-.++...++
T Consensus       111 ~~k~~l~~~I~  121 (132)
T PRK11509        111 HPWAELINLMR  121 (132)
T ss_pred             CCHHHHHHHHH
Confidence            55455544444

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.62  E-value=1.4  Score=34.46  Aligned_cols=62  Identities=21%  Similarity=0.482  Sum_probs=46.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ..|+++|-|.-.|-+.|.++-..|.+.+++.+    .-..|..+.++.-                       ..+.+.|.
T Consensus        19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~----~~a~IY~vDi~~V-----------------------pdfn~~ye   71 (133)
T PF02966_consen   19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK----NFAVIYLVDIDEV-----------------------PDFNQMYE   71 (133)
T ss_dssp             SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTT-----------------------HCCHHHTT
T ss_pred             CceEEEEEeCCCCCccHHHHHHHHHHHHHHhh----cceEEEEEEcccc-----------------------hhhhcccc
Confidence            46999999999999999999999999999886    4456777777753                       45667777


Q ss_pred             cCceeeEEEE
Q 018726          242 IKGIPALVLI  251 (351)
Q Consensus       242 i~~~P~~~li  251 (351)
                      +. .|.++++
T Consensus        72 l~-dP~tvmF   80 (133)
T PF02966_consen   72 LY-DPCTVMF   80 (133)
T ss_dssp             S--SSEEEEE
T ss_pred             cC-CCeEEEE
Confidence            77 6754443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=91.48  E-value=0.51  Score=35.23  Aligned_cols=49  Identities=8%  Similarity=-0.027  Sum_probs=28.7

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726           52 NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET  109 (351)
Q Consensus        52 ~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~  109 (351)
                      +|||+|.+....|.+       .|  +.+..++++.+.+...+..+   ....|.+..+|+
T Consensus        25 ~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~   76 (97)
T TIGR00365        25 PQCGFSARAVQILKA-------CG--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGE   76 (97)
T ss_pred             CCCchHHHHHHHHHH-------cC--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence            899999998877765       23  44666677655432222222   223456655654

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=0.52  Score=37.93  Aligned_cols=101  Identities=19%  Similarity=0.295  Sum_probs=60.0

Q ss_pred             ceeeccc-CCcEE-EEEEecCCChh-hHHhHHHHHHHHHHhhcccCCce-EEEEEeCCCCH--HHHHhhhccCCceeecc
Q 018726          155 KITVSEL-AGKTI-GLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCF-EVVLVSTDRDH--KEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       155 ~~~l~~~-~gk~v-ll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~--~~~~~~~~~~~~~~~~~  228 (351)
                      +++++++ +||-+ ++=.-+..-|. |+...|.+.+-+++++.   +++ +|+.|++++.-  .+|.+.+...  -.+-+
T Consensus        34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elks---KGVd~iicvSVnDpFv~~aW~k~~g~~--~~V~f  108 (171)
T KOG0541|consen   34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKS---KGVDEIICVSVNDPFVMKAWAKSLGAN--DHVKF  108 (171)
T ss_pred             eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHh---cCCcEEEEEecCcHHHHHHHHhhcCcc--ceEEE
Confidence            6777775 67544 33333334445 78899999999999986   444 57788887422  3444444322  23444


Q ss_pred             CchhhHHHHHHcCc-----------CceeeEEEECCCCceEecc
Q 018726          229 EDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       229 ~~d~~~~~~~~~~i-----------~~~P~~~lid~~G~v~~~~  261 (351)
                      ..|...++.+.+|+           +.-...+++ .||+|...+
T Consensus       109 ~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n  151 (171)
T KOG0541|consen  109 VADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN  151 (171)
T ss_pred             EecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence            55555555555543           233345555 789888765

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=90.59  E-value=0.81  Score=35.12  Aligned_cols=52  Identities=10%  Similarity=0.171  Sum_probs=27.7

Q ss_pred             HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          186 IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       186 ~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      .+...++.+   .++.+|.|....... .++|.+... ..+++..|++..+.+.+|+
T Consensus         3 ~~~~~~l~~---~gv~lv~I~~g~~~~-~~~f~~~~~-~p~~ly~D~~~~lY~~lg~   54 (115)
T PF13911_consen    3 SRRKPELEA---AGVKLVVIGCGSPEG-IEKFCELTG-FPFPLYVDPERKLYKALGL   54 (115)
T ss_pred             hHhHHHHHH---cCCeEEEEEcCCHHH-HHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence            344455554   667777777764323 555554433 2344455555555555544

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=90.52  E-value=0.68  Score=33.92  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             CCCeEEEEEe----CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726           41 GGKTICLFFS----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET  109 (351)
Q Consensus        41 ~gk~v~v~F~----a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~  109 (351)
                      ++++|+|.=.    .+||+.|.+....|.+       .|  +.+..++++.+.+...+..+   ....|.+..+|.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~   72 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LG--VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGE   72 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cC--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence            3445554432    2799999998777665       23  45666677666433222222   233566655654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=90.40  E-value=2.7  Score=33.16  Aligned_cols=67  Identities=24%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             cEEEEEEecC--CChh-h-HHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          164 KTIGLYFGAH--WCPP-C-RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       164 k~vll~F~a~--~C~~-C-~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      ..-+|.|...  .|.. + ......|.+++++|+.   +.+.+++++.+..                       ..+.+.
T Consensus        21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~~~~-----------------------~~~~~~   74 (130)
T cd02983          21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEAGAQ-----------------------LDLEEA   74 (130)
T ss_pred             CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeCccc-----------------------HHHHHH
Confidence            3556666543  2433 3 3456788899999983   3388888888764                       458899


Q ss_pred             cCcC--ceeeEEEECCCCc
Q 018726          240 FNIK--GIPALVLIGPDGK  256 (351)
Q Consensus       240 ~~i~--~~P~~~lid~~G~  256 (351)
                      ||+.  ++|++++++.++.
T Consensus        75 fgl~~~~~P~v~i~~~~~~   93 (130)
T cd02983          75 LNIGGFGYPAMVAINFRKM   93 (130)
T ss_pred             cCCCccCCCEEEEEecccC
Confidence            9985  4999999988664

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=0.98  Score=34.14  Aligned_cols=63  Identities=25%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +|.|.-+||+.|...-..|.+    +.    ....|+-+.-+.+-.++.                  ..+.+.-+-..+|
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~~----v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP   69 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----LG----VNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVP   69 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----CC----CCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCC
Confidence            568899999999985443333    33    344455544443322222                  2333334556889


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      .+||   +|+-+
T Consensus        70 ~vFI---~Gk~i   78 (104)
T KOG1752|consen   70 NVFI---GGKFI   78 (104)
T ss_pred             EEEE---CCEEE
Confidence            8776   45544

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.32  E-value=0.6  Score=33.44  Aligned_cols=20  Identities=20%  Similarity=0.325  Sum_probs=16.1

Q ss_pred             EEEEecCCChhhHHhHHHHH
Q 018726          167 GLYFGAHWCPPCRSFTSQLI  186 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~  186 (351)
                      +..|..++||+|.+....|.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~   22 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD   22 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH
Confidence            56788899999998876665

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=90.05  E-value=0.12  Score=33.88  Aligned_cols=25  Identities=28%  Similarity=0.719  Sum_probs=21.7

Q ss_pred             ceeeccccCC---CceEEEEcCCCCCCC
Q 018726          315 AYVCDCCKMR---GRFWAFSCDVCNYDL  339 (351)
Q Consensus       315 ~~~Cd~C~~~---~~~~~~~c~~~~~~~  339 (351)
                      .|+|.+|+..   -.+=+.+|.+|||.+
T Consensus        20 iYiCgdC~~en~lk~~D~irCReCG~RI   47 (62)
T KOG3507|consen   20 IYICGDCGQENTLKRGDVIRCRECGYRI   47 (62)
T ss_pred             EEEeccccccccccCCCcEehhhcchHH
Confidence            5999999984   678899999999864

0 [Transcription]

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=90.02  E-value=0.14  Score=45.84  Aligned_cols=70  Identities=10%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ++-.|+|.||-+.++.|..+...|..||.+|...    .++-|....  ..+...+.....|+|+.  +|.....+.+
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~v----KFvkI~a~~--~~~~~~f~~~~LPtllvYk~G~l~~~~V~  216 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEV----KFVKIRASK--CPASENFPDKNLPTLLVYKNGDLIGNFVG  216 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTS----EEEEEEECG--CCTTTTS-TTC-SEEEEEETTEEEEEECT
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCce----EEEEEehhc--cCcccCCcccCCCEEEEEECCEEEEeEEe
Confidence            4568999999999999999999999999998763    455444432  21222233333455554  7766555544

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=90.02  E-value=0.35  Score=41.57  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhc
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTR   74 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~   74 (351)
                      ..|++-++.|+...||+|..+.+.+   ..+.+.+.+.
T Consensus        35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~   72 (207)
T PRK10954         35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG   72 (207)
T ss_pred             CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence            3688899999999999999999876   6777776544

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.00  E-value=1.1  Score=32.06  Aligned_cols=55  Identities=18%  Similarity=0.193  Sum_probs=32.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHH----hcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHF----KCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~----~~~~~~~~~~~~~  109 (351)
                      ++.|.-+|||+|.+....|.       ..|  +++..+.++.+.. ...+..    .....|.+..++.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~   62 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK   62 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence            56678899999999776666       344  4555666655442 222222    2344566666553

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=89.98  E-value=0.36  Score=41.53  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEe
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVS  206 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~  206 (351)
                      .|++.|+.|+...||+|..+.+.+   ..+.+.+.    +++.++.+.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~----~~v~~~~~~   79 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP----EGTKMTKYH   79 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC----CCCeEEEec
Confidence            468889999999999999999866   77777776    444444433

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=89.93  E-value=0.49  Score=34.37  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +..|+.+.|++|..+.+.+.++.+...++   +.+.+..+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFP   38 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccc
Confidence            46799999999999999999988544433   666666554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=89.78  E-value=3.7  Score=31.81  Aligned_cols=89  Identities=21%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             ecccCCcEEEEEEecC--CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          158 VSELAGKTIGLYFGAH--WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       158 l~~~~gk~vll~F~a~--~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      |++++++.=+|..+|+  .-+.=+.....|.+-...+.+   .++.++.+.-+.....           .-+........
T Consensus         3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---Rdi~v~~i~~~~~~~~-----------~~~~~~~~~~~   68 (118)
T PF13778_consen    3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---RDIVVIVITGDGARSP-----------GKPLSPEDIQA   68 (118)
T ss_pred             hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---CceEEEEEeCCccccc-----------cCcCCHHHHHH
Confidence            4566665433333443  233345555566665555654   7888887754432100           01222233568


Q ss_pred             HHHHcCcC-ceeeEEEECCCCceEec
Q 018726          236 LCRIFNIK-GIPALVLIGPDGKTIST  260 (351)
Q Consensus       236 ~~~~~~i~-~~P~~~lid~~G~v~~~  260 (351)
                      +.+.|++. +.-+++||++||.+-.+
T Consensus        69 lr~~l~~~~~~f~~vLiGKDG~vK~r   94 (118)
T PF13778_consen   69 LRKRLRIPPGGFTVVLIGKDGGVKLR   94 (118)
T ss_pred             HHHHhCCCCCceEEEEEeCCCcEEEe
Confidence            88899875 34679999999999877

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=89.58  E-value=0.13  Score=32.74  Aligned_cols=35  Identities=26%  Similarity=0.510  Sum_probs=28.1

Q ss_pred             CCceeeccccCCCceE--EEEcCCCCCCCCccccCcc
Q 018726          313 AKAYVCDCCKMRGRFW--AFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       313 ~~~~~Cd~C~~~~~~~--~~~c~~~~~~~~~~c~~~~  347 (351)
                      ..+..|+.|++...+.  .|+|..|++-.|..|+...
T Consensus         9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v   45 (49)
T smart00109        9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV   45 (49)
T ss_pred             CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence            3456799999975542  6999999999999998754

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=89.42  E-value=0.89  Score=38.68  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHH
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQ   66 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~   66 (351)
                      .-.++..++.|+.+.|++|+++.+.+.+
T Consensus        74 ~~~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          74 KGNGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence            3467999999999999999999998877

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=88.39  E-value=0.94  Score=39.17  Aligned_cols=55  Identities=18%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             CCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           31 RQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        31 ~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      ..|..++....|++++|-+-..+|..|......|+.|..++...|- .+|.|+-|+
T Consensus        15 i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~-~~I~f~vVN   69 (238)
T PF04592_consen   15 IGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGL-SNISFMVVN   69 (238)
T ss_pred             ECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCC-CceEEEEEc
Confidence            3444667778999999999999999999999999999999988762 144444444

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=88.36  E-value=1.5  Score=33.11  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC--ChhhHHHHHh----cCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENGFEEHFK----CMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~--~~~~~~~~~~----~~~~~~~~~~~~  109 (351)
                      +|.|.-+||+.|.++...|.+       .+  +....+.+|.  +...+++++.    ....|.+..+|+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~-------~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk   76 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD-------LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGK   76 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh-------CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCE
Confidence            567899999999996665555       23  3344555554  4335666544    224566666554

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.24  E-value=0.84  Score=45.57  Aligned_cols=45  Identities=18%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      -++|||+|...++||..|.-|..+-   .++|+-++..     +|-|+||.++
T Consensus        41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREE   88 (667)
T COG1331          41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREE   88 (667)
T ss_pred             HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhh
Confidence            4899999999999999999987643   4566666654     8888888654

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=87.89  E-value=0.44  Score=36.15  Aligned_cols=27  Identities=30%  Similarity=0.604  Sum_probs=21.9

Q ss_pred             hHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          233 RQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       233 ~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ...+..+||+..+|+++++ ++|+.+..
T Consensus        71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~   97 (107)
T PF07449_consen   71 ERALAARFGVRRWPALVFF-RDGRYLGA   97 (107)
T ss_dssp             HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred             HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence            4799999999999999999 67766544

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK10824 glutaredoxin-4; Provisional

Probab=87.58  E-value=0.81  Score=35.31  Aligned_cols=25  Identities=20%  Similarity=0.196  Sum_probs=16.8

Q ss_pred             cEEEEEEec----CCChhhHHhHHHHHHH
Q 018726          164 KTIGLYFGA----HWCPPCRSFTSQLIEV  188 (351)
Q Consensus       164 k~vll~F~a----~~C~~C~~~~~~l~~l  188 (351)
                      ..|+|+--+    +|||+|.+....|.++
T Consensus        15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~   43 (115)
T PRK10824         15 NPILLYMKGSPKLPSCGFSAQAVQALSAC   43 (115)
T ss_pred             CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence            445554443    5999999887766554

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=87.07  E-value=1.5  Score=38.50  Aligned_cols=41  Identities=20%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      -+||.+++.|.-+.||.|+++.+.+.++.+    .+  +.+.++...
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P  145 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFP  145 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEecc
Confidence            368999999999999999999999877533    34  666665443

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=86.66  E-value=2.6  Score=33.85  Aligned_cols=73  Identities=18%  Similarity=0.176  Sum_probs=53.9

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      ..+++ |...+.. +++.++.||..+|..+.+=-. -|......|.+.+.++.+    ..+..||.|--- ...+++..-
T Consensus        23 ~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLPF-Aq~RfC~ae   97 (158)
T COG2077          23 KAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLPF-AQKRFCGAE   97 (158)
T ss_pred             cCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCChh-HHhhhhhhc
Confidence            44545 8888888 999999999999988876554 499999999998888754    468888888532 234444444


Q ss_pred             C
Q 018726          100 P  100 (351)
Q Consensus       100 ~  100 (351)
                      +
T Consensus        98 G   98 (158)
T COG2077          98 G   98 (158)
T ss_pred             C
Confidence            3

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=86.30  E-value=1.4  Score=42.15  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=23.8

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  211 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  211 (351)
                      |+.|..+|||+|.+....|.+          .++..-.|++|.+.
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~----------~gi~~~~idi~~~~   38 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA----------NDIPFTQISLDDDV   38 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH----------CCCCeEEEECCCCh
Confidence            678999999999987665544          23445556666543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=86.07  E-value=1.8  Score=42.91  Aligned_cols=64  Identities=14%  Similarity=0.071  Sum_probs=45.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeecChH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~~~~  109 (351)
                      ..++.-+..|..++|++|......+.+++....    ++..-.|  |... ....+.+..+.+|++..+++
T Consensus       114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~~  178 (517)
T PRK15317        114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMI--DGALFQDEVEARNIMAVPTVFLNGE  178 (517)
T ss_pred             cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEE--EchhCHhHHHhcCCcccCEEEECCc
Confidence            355666899999999999999888888877522    2444444  5432 24666788888999988764

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=84.12  E-value=1.2  Score=31.96  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=38.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecCh
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE  108 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~  108 (351)
                      ++.|..+.|+-|......+.++....   +  +.+..|+++.+.+-..+| .. -.|.+..++
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~--~~l~~vDI~~d~~l~~~Y-~~-~IPVl~~~~   57 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF---P--FELEEVDIDEDPELFEKY-GY-RIPVLHIDG   57 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS---T--CEEEEEETTTTHHHHHHS-CT-STSEEEETT
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc---C--ceEEEEECCCCHHHHHHh-cC-CCCEEEEcC
Confidence            57788999999999888888754432   2  789999999776534433 32 356666654

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=83.39  E-value=0.54  Score=39.33  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=51.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHHH--HhcCCceeeecChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEEH--FKCMPWLAVPFDETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~~  116 (351)
                      +..-|++.||-+.-..|+-|..+++.|++++      +...||.++..... +...  +++.|+..+.-+|.....+.|
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h------~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVG  155 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRH------VETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVG  155 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhc------ccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEee
Confidence            5556899999999999999999999999985      45778888876654 2222  556665444448877766665

>PHA03075 glutaredoxin-like protein; Provisional

Probab=83.24  E-value=1.9  Score=32.90  Aligned_cols=30  Identities=30%  Similarity=0.557  Sum_probs=26.6

Q ss_pred             cEEEEEEecCCChhhHHhHHHHHHHHHHhh
Q 018726          164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELK  193 (351)
Q Consensus       164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~  193 (351)
                      |.+++.|.-|.|+.|......|.++.++|.
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~   31 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD   31 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence            578999999999999999999988877775

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=82.97  E-value=0.19  Score=48.61  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=34.3

Q ss_pred             CCcceeeee-cCCceeeccccCCCceEE---EEcCCCCCCCCccccCc
Q 018726          303 KHEHELKLD-MAKAYVCDCCKMRGRFWA---FSCDVCNYDLHPKCVEG  346 (351)
Q Consensus       303 ~~~~~l~l~-~~~~~~Cd~C~~~~~~~~---~~c~~~~~~~~~~c~~~  346 (351)
                      ++||.+..- ...+-.||.|+|...|.+   -+|+-||...|..||.+
T Consensus       143 i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k  190 (888)
T KOG4236|consen  143 IRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK  190 (888)
T ss_pred             eecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence            456666644 234568999999888876   57999999999999985

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.61  E-value=19  Score=32.69  Aligned_cols=79  Identities=19%  Similarity=0.344  Sum_probs=55.2

Q ss_pred             cccCCcEEEEEEec----CCChhhHHhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchh
Q 018726          159 SELAGKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA  232 (351)
Q Consensus       159 ~~~~gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~  232 (351)
                      ...++=.+++.|.|    ..|.-|+.+..+++-+++.+....  ..+-.+.+-.+|-++                     
T Consensus        56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---------------------  114 (331)
T KOG2603|consen   56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---------------------  114 (331)
T ss_pred             CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------
Confidence            44455567777776    469999999999999998886421  122344554444332                     


Q ss_pred             hHHHHHHcCcCceeeEEEECC-CCceE
Q 018726          233 RQDLCRIFNIKGIPALVLIGP-DGKTI  258 (351)
Q Consensus       233 ~~~~~~~~~i~~~P~~~lid~-~G~v~  258 (351)
                      ..++.+.+++...|+++++.| .|++.
T Consensus       115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~  141 (331)
T KOG2603|consen  115 SPQVFQQLNLNNVPHLVLFSPAKGNKK  141 (331)
T ss_pred             cHHHHHHhcccCCCeEEEeCCCccccc
Confidence            468899999999999999965 56655

>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]

Probab=81.87  E-value=0.34  Score=43.80  Aligned_cols=33  Identities=21%  Similarity=0.615  Sum_probs=28.9

Q ss_pred             CCceeeccccC-CCceEEEEcCCCC-CCCCccccC
Q 018726          313 AKAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  345 (351)
Q Consensus       313 ~~~~~Cd~C~~-~~~~~~~~c~~~~-~~~~~~c~~  345 (351)
                      +-+..|++|.- .-.|++|+|..|. |.+++.|-.
T Consensus       238 ~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfw  272 (434)
T KOG4301|consen  238 FHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFW  272 (434)
T ss_pred             CCCccCcceecccccchhhhHhhcCCccccchhhc
Confidence            34578999987 6999999999999 999999965

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=81.38  E-value=13  Score=35.14  Aligned_cols=28  Identities=18%  Similarity=0.498  Sum_probs=24.9

Q ss_pred             hHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          233 RQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       233 ~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ...++..|-+..+|..|+||..|+.+.+
T Consensus        66 a~qFs~IYp~v~vPs~ffIg~sGtpLev   93 (506)
T KOG2507|consen   66 ATQFSAIYPYVSVPSIFFIGFSGTPLEV   93 (506)
T ss_pred             hhhhhhhcccccccceeeecCCCceeEE
Confidence            4577888899999999999999999887

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=80.21  E-value=3.5  Score=36.57  Aligned_cols=29  Identities=28%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYD   69 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~   69 (351)
                      .+|.+++.|.-+.||+|+++.+.+.++.+
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~  144 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVD  144 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence            67889999999999999999998877554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
1oc9_A	152	Tryparedoxin Ii From C.Fasciculata Solved By Mr Len		1e-21
1o6j_A	150	Tryparedoxin Ii From C.Fasciculata Solved By Sulphu		2e-21
1fg4_A	149	Structure Of Tryparedoxin Ii Length = 149		2e-21
1o81_A	152	Tryparedoxin Ii From C.fasciculata Solved By Sulphu		2e-21
1i5g_A	144	Tryparedoxin Ii Complexed With Glutathionylspermidi		2e-20
2lus_A	143	Nmr Structure Of Carcinoscorpius Rotundicauda Thior		7e-20
1ezk_A	153	Crystal Structure Of Recombinant Tryparedoxin I Len		1e-19
1qk8_A	146	Tryparedoxin-I From Crithidia Fasciculata Length =		1e-19
1ewx_A	146	Crystal Structure Of Native Tryparedoxin I From Cri		1e-19
1okd_A	154	Nmr-Structure Of Tryparedoxin 1 Length = 154		1e-19
1o73_A	144	Tryparedoxin From Trypanosoma Brucei Length = 144		4e-19
3s9f_A	165	The Structure Of Tryparedoxin I From Leishmania Maj		1e-18
1o8x_A	146	Mutant Tryparedoxin-I Cys43ala Length = 146		1e-18
1v5n_A	89	Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth		3e-11
1jfu_A	186	Crystal Structure Of The Soluble Domain Of Tlpa Fro		1e-04
2lrn_A	152	Solution Structure Of A Thiol:disulfide Interchange		1e-04
2h1b_A	143	Resa E80q Length = 143		4e-04
3fk8_A	133	The Crystal Structure Of Disulphide Isomerase From		5e-04

>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y     + N  FEV+L+S 
Sbjct: 16  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKN--FEVMLISW 73
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 74  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Query: 266 I 266
           +
Sbjct: 134 V 134

>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y       N  FEV+L+S 
Sbjct: 14  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 71
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 72  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
Query: 266 I 266
           +
Sbjct: 132 V 132

>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y       N  FEV+L+S 
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 70
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 266 I 266
           +
Sbjct: 131 V 131

>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y       N  FEV+L+S 
Sbjct: 16  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 73
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 74  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Query: 266 I 266
           +
Sbjct: 134 V 134

>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
           VL      I +  LAGKT+  YF A WCPP R+FT QLI+ Y       N  FEV+L+S 
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISW 70
Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 266 I 266
           +
Sbjct: 131 V 131

>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP--- 222
           IG YF AHWCPPCR FT  L ++Y+EL    +  FE++ VS+DR   E D+   +M    
Sbjct: 29  IGFYFSAHWCPPCRGFTPILADMYSEL-VDDSAPFEIIFVSSDR--SEDDMFQYMMESHG 85
Query: 223 -WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 274
            WLAIPY      ++   + I GIPALV++  DG  IS NG+  +   G +AF
Sbjct: 86  DWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138

>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L R   ++ V  LAGK +  YF A WCPPCR FT QLIE Y++   + N  FEVV  + D
Sbjct: 13  LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 70
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 71  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 130

>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L R   ++ V  LAGK +  YF A WCPPCR FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L R   ++ V  LAGK +  YF A WCPPCR FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 201
           + G   +LS+   ++++  L GKT+ LYF A WCPPCR FT  L E Y +     N  FE
Sbjct: 8   LPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FE 64
Query: 202 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPD-GKTIS 259
           VVL+S D +  +F   +  MPWLA+P++ R+   +L + F ++ IP L+ I  D G  I 
Sbjct: 65  VVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIG 124
Query: 260 TNGKEMI 266
           T  +  +
Sbjct: 125 TQARTRV 131

>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217
           +  L+GKT+  YF A WCPPCR FT QL+E Y +   + N  FE++L S D +  +F+  
Sbjct: 43  MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN--FEIILASWDEEEDDFNAY 100
Query: 218 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS 267
           ++ MPWL+IP+ +R   + L + ++++ IP L+ +  D G T++T  +  ++
Sbjct: 101 YAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALT 152

>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L R   ++ V  LAGK +  YF A WCPP R FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 209 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 266
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFW 328
           G+     TE R+ EIE    +     P++VK V HE HEL+L   + Y CD C+  G  W
Sbjct: 1   GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 329 AFSCDVCNYDLHPKCV 344
           ++ CD C++DLH KC 
Sbjct: 61  SYHCDECDFDLHAKCA 76

>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-RD 210
           D +   +S+  GKT+ +   A WC PCR     L E+  +L   +   FEVV ++ D RD
Sbjct: 49  DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKL---SGPNFEVVAINIDTRD 105
Query: 211 HKEFD--LNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTIST 260
            ++    L  + +  L    + +A+  QDL  I    G+P  VL+ P G  I+T
Sbjct: 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159

>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange Protein From Bacteroides Sp. Length = 152

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215
           +++++  GK + + F    C  CR  T  L++ YN  K   +  F +  VSTDR  +++ 
Sbjct: 22  VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK---DKGFTIYGVSTDRREEDWK 78
Query: 216 --LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259
             +      W  +  +    +D+   + I G P ++L+ P+GK ++
Sbjct: 79  KAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVA 124

>pdb|2H1B|A Chain A, Resa E80q Length = 143

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 143 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 198
           EG D   +VL   + ++I +S+L GK + L F   WC PC+    Q   + N+ K   + 
Sbjct: 2   EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCK---KQFPYMANQYKHFKSQ 58
Query: 199 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 255
             E+V V+           H+ M    + +    D  RQ L   +++  +P   LI P+G
Sbjct: 59  GVEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQVL-DAYDVSPLPTTFLINPEG 114
Query: 256 KTI 258
           K +
Sbjct: 115 KVV 117

>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella Fastidiosa Temecula1 Length = 133

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 227
           L FGA+WC  CR+    L    N     A H FEVV +    D   FD N  +      P
Sbjct: 34  LVFGANWCTDCRALDKSLRNQKN-TALIAKH-FEVVKI----DVGNFDRNLELSQAYGDP 87
Query: 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKT-ISTNGKEMIS 267
            +D             GIPA+V++  DGK   +T G E+ +
Sbjct: 88  IQD-------------GIPAVVVVNSDGKVRYTTKGGELAN 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	2e-43
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	2e-24
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	5e-43
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	4e-21
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	2e-40
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	4e-22
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	1e-39
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	1e-23
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	7e-39
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	4e-23
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	1e-22
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	3e-18
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	8e-09
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	6e-18
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-08
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	3e-17
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-08
2lrt_A	152	Uncharacterized protein; structural genomics, thio	5e-17
2lrt_A	152	Uncharacterized protein; structural genomics, thio	5e-10
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	4e-15
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-07
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	7e-15
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	2e-08
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	1e-14
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	3e-08
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	2e-13
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	3e-05
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	1e-12
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	5e-05
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	4e-12
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	4e-05
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	7e-12
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	7e-12
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	3e-07
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	1e-11
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	2e-05
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	1e-11
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	9e-05
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	1e-11
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	4e-05
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	2e-11
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	2e-06
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	2e-11
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-05
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	4e-11
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	7e-05
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	4e-11
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	5e-05
3raz_A	151	Thioredoxin-related protein; structural genomics,	7e-11
3raz_A	151	Thioredoxin-related protein; structural genomics,	4e-06
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	7e-11
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	4e-05
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-10
4evm_A	138	Thioredoxin family protein; structural genomics, n	4e-05
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	8e-10
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	1e-04
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	2e-09
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	4e-04
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	3e-09
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	8e-06
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	4e-08
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	3e-04
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	9e-08
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-07
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-04
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	7e-07
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	8e-07
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	9e-07
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	6e-06
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	7e-06
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-05
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	1e-05
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	3e-05
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	4e-05
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	7e-05
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	7e-05
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	7e-05
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	8e-05
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	8e-05
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-04
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	1e-04
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	2e-04
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	3e-04
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	7e-04
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	7e-04
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	7e-04
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	8e-04

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score =  146 bits (371), Expect = 2e-43
 Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 132 QGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 191
           +G  +  +    G    L +      +  L+GKT+  YF A WCPPCR FT QL+E Y +
Sbjct: 17  RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76

Query: 192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVL 250
                +  FE++L S D +  +F+  ++ MPWL+IP+ +R   + L + ++++ IP L+ 
Sbjct: 77  HH--DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIG 134

Query: 251 IGPD-GKTISTNGK-EMISLYGAKAFPFTE 278
           +  D G T++T  +  +      + FP+ +
Sbjct: 135 LNADTGDTVTTRARHALTQDPMGEQFPWRD 164

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 96.8 bits (241), Expect = 2e-24
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 12  DSSDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
             S    V    G    L +Q     + S  GKT+  +FSA+WC PC+ FTPQLV+ Y+ 
Sbjct: 17  RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106
                   E+I  S+D +E+ F  ++  MPWL++PF
Sbjct: 77  HH-DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPF 111

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score =  144 bits (366), Expect = 5e-43
 Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 5/141 (3%)

Query: 141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 200
                  VL      I +  LAGKT+  YF A WCPP R+FT QLI+ Y       N  F
Sbjct: 6   FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--F 63

Query: 201 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTI 258
           EV+L+S D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I
Sbjct: 64  EVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNII 123

Query: 259 STNGKEMI-SLYGAKAFPFTE 278
           +T  + M+     AK FP+  
Sbjct: 124 TTQARTMVVKDPEAKDFPWPN 144

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 87.1 bits (216), Expect = 4e-21
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 21  ASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELE 79
                  +L      + L S  GKT+  +FSA+WC P + FTPQL+  Y     +    E
Sbjct: 6   FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFE 64

Query: 80  VIFISFDHDENGFEEHFKCMPWLAVPF 106
           V+ IS+D     F++++  MPWLA+PF
Sbjct: 65  VMLISWDESAEDFKDYYAKMPWLALPF 91

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score =  138 bits (349), Expect = 2e-40
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 148 VLSRDHRKITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 205
           ++ ++  ++  +E       IG YF AHWCPPCR FT  L ++Y+EL    +  FE++ V
Sbjct: 9   LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD-DSAPFEIIFV 67

Query: 206 STDRDHKEFD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGK 263
           S+DR   +    +  S   WLAIPY      ++   + I GIPALV++  DG  IS NG+
Sbjct: 68  SSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127

Query: 264 EMISLYGAKAF 274
             +   G +AF
Sbjct: 128 GEVQSLGPRAF 138

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 89.8 bits (223), Expect = 4e-22
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 28  LLSRQGK-VPLSSC--GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
           L+ +    V  +        I  +FSA+WC PC+ FTP L  +Y  L       E+IF+S
Sbjct: 9   LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68

Query: 85  FDHDENGFEEHFKC--MPWLAVPFDETLHKKL 114
            D  E+   ++       WLA+P+       +
Sbjct: 69  SDRSEDDMFQYMMESHGDWLAIPYRSGPASNV 100

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score =  136 bits (344), Expect = 1e-39
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L R   ++ V  LAGK +  YF A WCPP R FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWD 71

Query: 209 RDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 265
            +   F    + MPWLA+P+    A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

Query: 266 ISLYGAKAFPFTES 279
           +     + FP+ ++
Sbjct: 132 VKDPEGEQFPWKDA 145

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 94.4 bits (235), Expect = 1e-23
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 24  GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
           G+E L    G+V + S  GK +  +FSA+WC P + FTPQL++ YD         EV+F 
Sbjct: 10  GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68

Query: 84  SFDHDENGFEEHFKCMPWLAVPF 106
           ++D +E+GF  +F  MPWLAVPF
Sbjct: 69  TWDEEEDGFAGYFAKMPWLAVPF 91

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score =  134 bits (339), Expect = 7e-39
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
           L     ++++  L GKT+ LYF A WCPPCR FT  L E Y +     N  FEVVL+S D
Sbjct: 14  LLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWD 71

Query: 209 RDHKEFDLNHSIMPWLAIPYEDRARQ-DLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 265
            +  +F   +  MPWLA+P++ R+   +L + F ++ IP L+ I  D G  I T  +  +
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131

Query: 266 ISLYGAKAFPFTE 278
           I       FP+  
Sbjct: 132 IEDPDGANFPWPN 144

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 92.4 bits (230), Expect = 4e-23
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
            L  +   V L S  GKT+ L+FSA+WC PC+ FTP L + Y+         EV+ IS+D
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWD 71

Query: 87  HDENGFEEHFKCMPWLAVPFDE 108
            +E+ F +++  MPWLA+PFD+
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQ 93

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 89.6 bits (222), Expect = 1e-22
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFW 328
           G+     TE R+ EIE    +     P++VK V H EHEL+L   + Y CD C+  G  W
Sbjct: 1   GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60

Query: 329 AFSCDVCNYDLHPKCV 344
           ++ CD C++DLH KC 
Sbjct: 61  SYHCDECDFDLHAKCA 76

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 214
              +S L  +   L+F    C  CR F     E+   ++   N    V+ +  D + +E+
Sbjct: 19  NSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEW 78

Query: 215 D--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
                +    W+ + +         ++++I+  P + L+    + I  +
Sbjct: 79  ATKAVYMPQGWI-VGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFI 83
            ++  G    +S    +   LFF    C  C+ F     +     + +      L V+ I
Sbjct: 12  YVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAI 69

Query: 84  SFDHDENGFEEHFKCMPW 101
             D +   +      MP 
Sbjct: 70  YPDENREEWATKAVYMPQ 87

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 78.5 bits (194), Expect = 6e-18
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 19/142 (13%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 211
               + ++  K   L+F    C  C+  T +L + + + +       +V   + +R    
Sbjct: 22  TYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNR---AKGIQVYAANIERKDEE 78

Query: 212 -KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN-GKEMISLY 269
             +F  +  I  WL +  + +   D    ++I   P L ++  +   I+   G E +   
Sbjct: 79  WLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENL--- 134

Query: 270 GAKAFPFTESRIAEIETALKKE 291
                   +  + + E +LK +
Sbjct: 135 --------DDFLVQYEKSLKTK 148

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
             L     K   LFF  + C  C+  TP+L   +   R +G  ++V   + +  +  + 
Sbjct: 23 YRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWL 80

Query: 94 EHFK 97
          +  +
Sbjct: 81 KFIR 84

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 214
           K T+ +   +   L+     C  C      L         TA    +V+ +  D +  E+
Sbjct: 23  KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW 82

Query: 215 D--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 272
               N     W    Y+         +++++ IP L L+  +   +  +           
Sbjct: 83  KKHRNDFAKEWT-NGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD----------- 130

Query: 273 AFPFTESRIAEIETALKK 290
                 + + ++E  L +
Sbjct: 131 ------ATLQKVEQYLAE 142

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGF 92
           K  L     +   LF +   C  C      L             +L+V+ I  D + + +
Sbjct: 23  KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW 82

Query: 93  EEHFKCMP 100
           ++H     
Sbjct: 83  KKHRNDFA 90

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
              ++++L GK + + F  +      +    L E+YN+     +  FE+  +S D D   
Sbjct: 26  NTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYA---SQGFEIYQISLDGDEHF 82

Query: 214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
           +  +   +PW+ +   + A      ++N+  +P++ L+  + +  +  
Sbjct: 83  WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
              L+   GK + + F+             L +LY+   ++G   E+  IS D DE+ ++
Sbjct: 27  TRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWK 84

Query: 94  EHFKCMPWLAV 104
                +PW+ V
Sbjct: 85  TSADNLPWVCV 95

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
             +++++  GK + + F    C  CR  T  L++ YN  K   +  F +  VSTDR  ++
Sbjct: 20  NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK---DKGFTIYGVSTDRREED 76

Query: 214 FD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
           +   +      W  +  +    +D+   + I G P ++L+ P+GK ++  
Sbjct: 77  WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
            V L+   GK + + F    C  C+  TP L++ Y+  + +G    +  +S D  E  ++
Sbjct: 21  SVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWK 78

Query: 94  EHFK--CMPWLAVPFD 107
           +  +     W  V   
Sbjct: 79  KAIEEDKSYWNQVLLQ 94

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 134 GKLEQLLAIEGR---DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYN 190
           GKL + +   G          +  K +     G+   L F A +    R+   QL    N
Sbjct: 1   GKLTEGVNP-GDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVN 59

Query: 191 ELKTTANHCFEVVLVSTDRD---HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 247
           +          +  +S D       E      +              +L + ++++    
Sbjct: 60  KFG---PDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFK 116

Query: 248 LVLIGPDGKTISTN 261
             LI  +G  I+ N
Sbjct: 117 NFLINDEGVIIAAN 130

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 28  LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87
            L    K    +  G+   L F A +    +    QL    +        + +  IS D 
Sbjct: 18  FLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDE 75

Query: 88  DENGFEEHFK--CMPW 101
            E+ F E  K   +  
Sbjct: 76  KESIFTETVKIDKLDL 91

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
           + +++++L GK I +   A WC PCR     L E+  +           V +S D++ K 
Sbjct: 21  KTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA---GKDIHFVSLSCDKNKKA 77

Query: 214 FD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271
           ++  +    +    I       +     + I GIP  +L+  DGK IS N          
Sbjct: 78  WENMVTKDQLKG--IQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN-------MTR 128

Query: 272 KAFPFTESRIAEIETALKKEG 292
            + P T  +  E+   L  EG
Sbjct: 129 PSDPKTAEKFNEL---LGLEG 146

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 31/141 (21%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
                GK V L+   GK I +   A WC PC+   P L +L +    +   +  + +S D
Sbjct: 15  YPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCD 72

Query: 87  HDENGFEEHFK--CMPWLAVPFDE--TLHKKLRIR------------------KRREELK 124
            ++  +E       +  + +      T      I                     R    
Sbjct: 73  KNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDP 132

Query: 125 AIDDSKRQGGKLEQLLAIEGR 145
              +      K  +LL +EG 
Sbjct: 133 KTAE------KFNELLGLEGH 147

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 19/140 (13%)

Query: 155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--- 211
             +      + + L F A WC P     ++L  +  E K   N  F ++ +S D D    
Sbjct: 25  SRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAW 82

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271
           +   +    + W  +        +  + + I  +P  +L+ P GK ++ +      + G 
Sbjct: 83  ETA-IKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD------IQG- 134

Query: 272 KAFPFTESRIAEIETALKKE 291
                   ++ E+   LK E
Sbjct: 135 ---EALTGKLKEL---LKTE 148

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 34  KVPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91
           K+  S+     + + L F A+WC P      +L +L    + +     ++ IS D D   
Sbjct: 23  KLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYK-KNKNFAMLGISLDIDREA 81

Query: 92  FEEHFK--CMPW 101
           +E   K   + W
Sbjct: 82  WETAIKKDTLSW 93

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTS--QLIEVYNELKTTANHC 199
            +G     S D  K        K++ + F A W        S  +L E+Y + K      
Sbjct: 19  AKGEKITRSSDAFK-------QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY-- 69

Query: 200 FEVVLVSTDRDH---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
             ++ +S D D    K+  +    + W  +        ++ + ++I  IPA +L+  DGK
Sbjct: 70  IGMLGISLDVDKQQWKDA-IKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGK 128

Query: 257 TISTN 261
            ++ N
Sbjct: 129 ILAKN 133

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 28  LLSRQGK-VPLSSCG--GKTICLFFSANWCRPC--KTFTPQLVQLYDTLRTRGTELEVIF 82
           L + +G+ +  SS     K++ + F A+W      K    +L ++Y   +     + ++ 
Sbjct: 16  LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLG 74

Query: 83  ISFDHDENGFEEHFK--CMPW 101
           IS D D+  +++  K   + W
Sbjct: 75  ISLDVDKQQWKDAIKRDTLDW 95

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 29/163 (17%)

Query: 140 LAIEGR---DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT 195
           ++++ +    + L     + ++ ++L GK   + F    CP C S   ++I+  N+ K  
Sbjct: 1   MSLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYK-- 58

Query: 196 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALV 249
            N  F+V+ V+   D  E     S+  ++    +P+    D A + + + F  +  P  V
Sbjct: 59  -NKNFQVLAVAQPIDPIE-----SVRQYVKDYGLPFTVMYD-ADKAVGQAFGTQVYPTSV 111

Query: 250 LIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 292
           LIG  G+ + T         G   F        EI+TA +   
Sbjct: 112 LIGKKGEILKTY-------VGEPDFGKLY---QEIDTAWRNSD 144

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88
           V  +   GK   + F    C  C +  P++++  +  + +    +V+ ++   D
Sbjct: 20 TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPID 72

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 64.6 bits (157), Expect = 7e-12
 Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 87  HDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRD 146
           H  +G E  +      A+   E L+    +  +  +L    D   Q         ++G  
Sbjct: 7   HHHHGSENLY--FQSGAMEIREQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGIT 64

Query: 147 YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 205
             L +  ++ I +  L GK + + F A+ C  C+     ++  Y   K   +    V+ V
Sbjct: 65  GWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYK---DSGLAVIGV 121

Query: 206 STDRDHKEFDLNHSIMPWLA---IPY---EDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259
            T     E     ++    A   I Y    D         +  +  PA  LI   G    
Sbjct: 122 HTPEYAFEKVPG-NVAKGAANLGISYPIALDN-NYATWTNYRNRYWPAEYLIDATGTVRH 179

Query: 260 TNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHE 307
                    +G   +  TE+ + ++     K G  LP+       +  
Sbjct: 180 I-------KFGEGDYNVTETLVRQL-LNDAKPGVKLPQPSSTTTPDLT 219

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--- 211
            + +S+  G  + L F A WC PCR     + ++  + K      F+VV V+ D      
Sbjct: 20  VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYK---AKGFQVVAVNLDAKTGDA 76

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 261
            +F L      +              R++ +KG+P   LI  +GK +  +
Sbjct: 77  MKF-LAQVPAEFTVAFDPK---GQTPRLYGVKGMPTSFLIDRNGKVLLQH 122

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 33 GKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
          G V LS   G  + L F A+WC PC+   P + Q+    + +G   +V+ ++ D   
Sbjct: 19 GVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKT 73

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
           +   +S+  GKT+ +   A WC PCR     L E+  +L       FEVV ++ D    E
Sbjct: 51  KPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---GPNFEVVAINIDTRDPE 107

Query: 214 ----F--DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMIS 267
               F  + N + + +     + +  QDL  I    G+P  VL+ P G  I+T       
Sbjct: 108 KPKTFLKEANLTRLGYFNDQ-KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT------- 159

Query: 268 LYGAKAFPFTESRIAEIETALKKEGDAL 295
           + G   +  +E  +  I  A  K   AL
Sbjct: 160 IAGPAEWA-SEDALKLIRAATGKAAAAL 186

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---- 89
              LS   GKT+ +   A WC PC+   P L +L   L       EV+ I+ D  +    
Sbjct: 52  PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKP 109

Query: 90  NGFEEHFKCMPWLAVPFDETL 110
             F +    +  L    D+  
Sbjct: 110 KTFLKEAN-LTRLGYFNDQKA 129

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTS-QLIEVYNELKTTANHCFEVVLVSTDRDH- 211
             +T+++L GK I +      CP C         +V             V+ + T  +H 
Sbjct: 19  TDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFP---EDKVAVLGLHTVFEHH 75

Query: 212 ------------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
                        E+ +     P       D A       + ++G P+L+LI   G 
Sbjct: 76  EAMTPISLKAFLHEYRIKF---PVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGD 129

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFT-PQLVQLYDTLRTRGTELEVIFISFD 86
            +    + L+   GK I +      C  C     P   ++          + V+ +   
Sbjct: 14 WFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTV 71

Query: 87 HDEN 90
           + +
Sbjct: 72 FEHH 75

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 22/120 (18%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
             I+++ + G  + L+F A WCP C      L  +  + +        V+ +        
Sbjct: 28  EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYRE-----ISVIAIDFWTAEAL 82

Query: 214 FDLNHSIMPWLAIPYEDRARQ-----------------DLCRIFNIKGIPALVLIGPDGK 256
             L  +   +      +  R+                  L   FN++ I  +V++     
Sbjct: 83  KALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSN 142

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
           + L++ GG  + L+F A WC  C      L +L +  R    E+ VI I F   E 
Sbjct: 29 VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEA 81

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 21/146 (14%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           + ++I +S+L GK + L F   WC PC+     +   Y   K   +   E+V V+     
Sbjct: 15  NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFK---SQGVEIVAVNVGESK 71

Query: 212 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 268
                F +    + +  +   D   + +   +++  +P   LI P+GK +         +
Sbjct: 72  IAVHNF-MKSYGVNFPVVLDTD---RQVLDAYDVSPLPTTFLINPEGKVVKV-------V 120

Query: 269 YGAKAFPFTESRIAEIETALKKEGDA 294
            G      TES I +    +K    +
Sbjct: 121 TG----TMTESMIHDYMNLIKPGETS 142

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
          ++ LS   GK + L F   WC PCK   P +   Y   +++G  +E++ ++    +    
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVH 75

Query: 94 EHFK 97
             K
Sbjct: 76 NFMK 79

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
                ++++  GK + + F A WCP CR     +  +             V+ V+ ++  
Sbjct: 30  SGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFP---KGDLVVLAVNVEKRF 86

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
            E     + + +      D     + + +    +P   ++   G 
Sbjct: 87  PEK-YRRAPVSFNF--LSDA-TGQVQQRYGANRLPDTFIVDRKGI 127

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
             L+   GK + + F A+WC  C+   P + +L  +       L V+ ++ +       
Sbjct: 33 NKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKY 90

Query: 94 EHFK 97
              
Sbjct: 91 RRAP 94

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 19/119 (15%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTS-QLIEVYNELKTTANHCFEVVLVSTDRD 210
           +H  ++  +L GK + +      CP C +    Q  +++  +        +V+ + +  +
Sbjct: 19  NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMID---ESQVQVIGLHSVFE 75

Query: 211 H-------------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
           H              EF +   +   + +P E +      + + ++G P+++L    G+
Sbjct: 76  HHDVMTPEALKVFIDEFGIKFPVA--VDMPREGQRIPSTMKKYRLEGTPSIILADRKGR 132

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFT-PQLVQLYDTLRTRGTELEVIFIS---FDHDE 89
           +      GK + +      C  C     PQ  +++  +      ++VI +      HD 
Sbjct: 22 GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDV 79

Query: 90 NGFE 93
             E
Sbjct: 80 MTPE 83

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 27/165 (16%)

Query: 140 LAIEGR---DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT 195
           +++E     D+ L + +   + +S+L G+ + + F A WCPPCR     ++ +   +   
Sbjct: 1   MSLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMA-- 58

Query: 196 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALV 249
               F ++ VS D   K      ++  +            D A + + +++   G+P   
Sbjct: 59  -GKPFRMLCVSIDEGGKV-----AVEEFFRKTGFTLPVLLD-ADKRVGKLYGTTGVPETF 111

Query: 250 LIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 294
           +I   G  +         + GA  +   E  IA +   L K  + 
Sbjct: 112 VIDRHGVILKK-------VVGAMEWDHPEV-IAFLNNELSKAREG 148

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88
           V LS   G+ + + F A WC PC+   P +++L   +  +     ++ +S D  
Sbjct: 20 VVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEG 72

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 140 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHC 199
           +++   +    +D+   ++  L      +   A WC PCR     + + Y   K      
Sbjct: 1   MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK---KGS 57

Query: 200 FEVVLVSTDRDH--KEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
            ++V ++ D       F     +  P       +           +  +P  V+  P   
Sbjct: 58  VDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
          E    +      L S       +   A WC PC+   P + + Y   +     ++++ I+
Sbjct: 7  ELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIA 64

Query: 85 FDHDEN 90
           D  +N
Sbjct: 65 LDTSDN 70

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D +  + + L GK   + F A WCPPCRS    +++V        +  F  V ++ +   
Sbjct: 23  DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWA---SRGFTFVGIAVNEQL 79

Query: 212 ---KEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
              K +     I  P +    E     +      I GIP   +I   G 
Sbjct: 80  PNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGN 128

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
           ++  GK    +S  GK   + F A WC PC++  P +VQ+  T  +RG     + I+ +
Sbjct: 19 GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVN 76

Query: 87 HDE 89
             
Sbjct: 77 EQL 79

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D +   +S+  GK + L F A WC  C +      E+  E     +    + +VS     
Sbjct: 11  DGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG---DDYVVLTVVSPGHKG 67

Query: 212 KE----FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGK 256
           ++    F   +  + +  +P   D     L   + ++  P    I  +GK
Sbjct: 68  EQSEADFKNWYKGLDYKNLPVLVDP-SGKLLETYGVRSYPTQAFIDKEGK 116

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--G 91
              LS   GK + L F A+WC  C    P   ++          L V+      +++   
Sbjct: 14  TYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEAD 73

Query: 92  FEEHFKCMPWLAVP--FDET 109
           F+  +K + +  +P   D +
Sbjct: 74  FKNWYKGLDYKNLPVLVDPS 93

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
                  + L GK   L+F   WCP C +    L +V              V ++T  D 
Sbjct: 13  SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-----VTFVGIATRADV 67

Query: 212 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
              + F ++   + +  +   D     +   +N+   PA V    DG 
Sbjct: 68  GAMQSF-VSKYNLNFTNLNDAD---GVIWARYNVPWQPAFVFYRADGT 111

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
              +S  GK   L+F   WC  C    P L Q+          +  + I+   D    +
Sbjct: 16 PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAA----ANPAVTFVGIATRADVGAMQ 71

Query: 94 EHFK 97
              
Sbjct: 72 SFVS 75

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 149 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK---TTANHCFEVVLV 205
           L  +  +I +S+   + + L     WC PCRS +  L  ++ EL+           V+ +
Sbjct: 45  LMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGI 104

Query: 206 STDRDHKE----FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
           +     ++    F  ++ +  + +I                  IP  +++    +
Sbjct: 105 NVRDYSRDIAQDFVTDNGL-DYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE----LEVIF 82
            L  +G  + LS    + + L     WC PC++ +  L  +++ L+  G        V+ 
Sbjct: 44  SLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103

Query: 83  ISFD 86
           I+  
Sbjct: 104 INVR 107

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D +++T+S L GK + L F A WC  CR     + +     K   N  F ++ +  D   
Sbjct: 22  DGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWL-KHKDNADFALIGIDRDEPL 80

Query: 212 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMI 266
                F    + + +           D+   + ++  GI   VLI  +GK +     ++ 
Sbjct: 81  EKVLAF-AKSTGVTYPLGLDPGA---DIFAKYALRDAGITRNVLIDREGKIV-----KLT 131

Query: 267 SLYGAKAFPFTESRIAEIETALKKEGD 293
            LY  + F        +I   LK+   
Sbjct: 132 RLYNEEEFASLV---QQINEMLKEGHH 155

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-- 91
           +V LSS  GK + L F+A+WC  C+   P + +          +  +I I  D       
Sbjct: 25  QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84

Query: 92  -FEEHFKCMPWLAVPFDET 109
            F +    + +  +  D  
Sbjct: 85  AFAKSTG-VTYP-LGLDPG 101

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 12/109 (11%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 213
                  +  K   ++F +  C  C+    Q+ E  ++ +        VV V   R   +
Sbjct: 20  EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----LNVVAVHMPRSEDD 75

Query: 214 FDLNHSIMPWLA---IPY---EDRARQDLCRIFNIKGIPALVLIGPDGK 256
            D    I    A   I      D     L   F  + +PA  +    G+
Sbjct: 76  LDPG-KIKETAAEHDITQPIFVDS-DHALTDAFENEYVPAYYVFDKTGQ 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 55/379 (14%), Positives = 109/379 (28%), Gaps = 115/379 (30%)

Query: 3   RDNDQSKFIDSSDFL-TVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFT 61
            + D     D  D   ++L+ E ++ ++  +  V                          
Sbjct: 31  DNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVS------------------------- 62

Query: 62  PQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKR-- 119
              ++L+ TL ++  E+   F+      N          +L  P      +   + +   
Sbjct: 63  -GTLRLFWTLLSKQEEMVQKFVEEVLRIN--------YKFLMSPIKTEQRQPSMMTRMYI 113

Query: 120 --REELKAIDD--SKRQGGKLEQLLAIEGRDYVLS-RDHRKITVSELA--GKTI------ 166
             R+ L   +   +K    +L+  L +  R  +L  R  + + +  +   GKT       
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 167 -------GLYFGAHWCP--PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217
                   + F   W     C S    ++E+  +L       +++    T R     ++ 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKL------LYQIDPNWTSRSDHSSNIK 224

Query: 218 HSIMPWLAIPYEDRARQDLCRIFNIKGIPA--LVLIGPDG--------------KT-IST 260
             I            + +L R+   K      LVL                   K  ++T
Sbjct: 225 LRI---------HSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLTT 272

Query: 261 NGKEMI-SLYGAKAF---------PFTESRIAEI-ETALKKEGDALPREVKDVKHEHELK 309
             K++   L  A              T   +  +    L      LPREV      +  +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRR 329

Query: 310 LDMAKAYVCDCCKMRGRFW 328
           L +    + D        W
Sbjct: 330 LSIIAESIRD-GLATWDNW 347

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS---TDRD 210
                  L GK   L+F A WCP C+     + +V              V V+       
Sbjct: 16  HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-----VTFVGVAGLDQVPA 70

Query: 211 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 262
            +EF   + +  +  +   D     +   F +   PA   + P G      G
Sbjct: 71  MQEFVNKYPVKTFTQLADTD---GSVWANFGVTQQPAYAFVDPHGNVDVVRG 119

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
                S  GK   L+F A WC  C+   P + Q+         E+  + ++        +
Sbjct: 17  DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAA----SHPEVTFVGVAGLDQVPAMQ 72

Query: 94  EHFK--CMPWLAVPFDET 109
           E      +       D  
Sbjct: 73  EFVNKYPVKTFTQLADTD 90

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D+R  +V     K   + F A WCP C S   Q  +   + K        ++ V++    
Sbjct: 27  DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAK---FSSANLITVASPGFL 83

Query: 212 KEFDLNHSIMPWLAIPYEDR-----ARQDLCRIFNIKGIPALVLIGPDGK 256
            E         +  + Y            + +  NI   P+  LIG DG 
Sbjct: 84  HEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGD 133

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 222
           G+   L+F   WCPPC+    Q    Y+      +   ++V V+     +       +  
Sbjct: 34  GQKTILHFWTSWCPPCKKELPQFQSFYDAHP---SDSVKLVTVNLVNSEQNQQ---VVED 87

Query: 223 WLA---IPYE---DRARQDLCRIFNIKGIPALVLIGPDGK 256
           ++    + +    D  + +L + ++I  IP   L+   G+
Sbjct: 88  FIKANKLTFPIVLDS-KGELMKEYHIITIPTSFLLNEKGE 126

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 15 DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74
           F  +   EG +  +  +G+            L F  +WC PCK   PQ    YD   + 
Sbjct: 17 VF-LMKTIEGEDISIPNKGQK---------TILHFWTSWCPPCKKELPQFQSFYDAHPSD 66

Query: 75 GTELEVIFISFDHDENGFEE 94
             ++++ ++  + E   + 
Sbjct: 67 S--VKLVTVNLVNSEQNQQV 84

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 19/99 (19%)

Query: 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 221
             K   L FGA+WC  CR+    L     +        FEVV +    D   FD N  + 
Sbjct: 28  THKPTLLVFGANWCTDCRALDKSLRN--QKNTALIAKHFEVVKI----DVGNFDRNLELS 81

Query: 222 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
                P                GIPA+V++  DGK   T
Sbjct: 82  QAYGDP-------------IQDGIPAVVVVNSDGKVRYT 107

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 29/117 (24%)

Query: 154 RKITVSEL-----AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 208
              TV          +T   + G   CP CR F   L  V  E K        +  ++++
Sbjct: 15  EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK------AHIYFINSE 68

Query: 209 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEM 265
              +  DL                 Q     + I  +P  V I  DG+        M
Sbjct: 69  EPSQLNDL-----------------QAFRSRYGIPTVPGFVHIT-DGQINVRCDSSM 107

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 23/128 (17%)

Query: 163 GKTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 221
            K IGL+F G+ WC  C     Q+++  +E K  A       +V  D   K         
Sbjct: 47  HKPIGLFFTGSDWCMWCIKMQDQILQ-SSEFKHFAGVHL--HMVEVDFPQKNHQ------ 97

Query: 222 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRI 281
                  + +  Q+L   + + G P LV I  +GK ++  G E     G  A+      +
Sbjct: 98  ----PEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFEP---GGGAAY------V 144

Query: 282 AEIETALK 289
           +++++ALK
Sbjct: 145 SKVKSALK 152

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 222
           G  + +     WC  C+     L   + E    +      V+V+ + + +  D + S   
Sbjct: 46  GLPLMVIIHKSWCGACK----ALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP-- 99

Query: 223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 282
                             +   IP ++ + P GK       E+I+  G  ++ +      
Sbjct: 100 ------------------DGGYIPRILFLDPSGKVHP----EIINENGNPSYKYFYVSAE 137

Query: 283 EIETALKKEGDALPREVKDVKH 304
           ++   +K+  + L  +    KH
Sbjct: 138 QVVQGMKEAQERLTGDAFRKKH 159

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 27/100 (27%)

Query: 163 GKTIGLYFGAHWCPPCRSF---TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 219
           GK + L   A WC  C+ F   T    +V   L        + VL+  +           
Sbjct: 31  GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-------DTVLLQANVTA-------- 75

Query: 220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259
                     D     L +  N+ G+P ++     G+   
Sbjct: 76  ---------NDAQDVALLKHLNVLGLPTILFFDGQGQEHP 106

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 25/91 (27%)

Query: 170 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 229
           F    CP C     +L  V  E +   N    +     + +                   
Sbjct: 33  FKTDTCPYCVEMQKELSYVSKEREGKFN----IYYARLEEE------------------- 69

Query: 230 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
                DL   ++   +P  V +  +G     
Sbjct: 70  --KNIDLAYKYDANIVPTTVFLDKEGNKFYV 98

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 211
           + +T + ++   + + F A WC  C++    L  V  E        F V+          
Sbjct: 22  QPVTPATVSKPAV-IVFWASWCTVCKAEFPGLHRVAEETGVP----FYVISREPRDTREV 76

Query: 212 -KEF-DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
             E+       +P LA   +      +   F + G P   ++  +GK
Sbjct: 77  VLEYMKTYPRFIPLLASDRDRPHE--VAARFKVLGQPWTFVVDREGK 121

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 17  LTVLASEGVEF----LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
           +++    G       LL  +G+ V  ++     + +F+ A+WC  CK   P L ++    
Sbjct: 1   MSLAVKPGEPLPDFLLLDPKGQPVTPATVSKPAVIVFW-ASWCTVCKAEFPGLHRVA--- 56

Query: 72  RTRGTELEVIFISFDHDENG----FEEHFKCMPWLAVPFDET 109
              G    VI               + + + +P LA   D  
Sbjct: 57  EETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRP 98

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 49/224 (21%)

Query: 49  FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108
           F A WC  CK F P+  ++ + L+    +  +     D               LA  FD 
Sbjct: 39  FYAPWCGHCKQFAPEYEKIANILK--DKDPPIPVAKIDATSASV---------LASRFDV 87

Query: 109 ----TLH-----KKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVS 159
               T+      + +     R + + +   +                 VL++++    V+
Sbjct: 88  SGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWT--PPPEVTLVLTKENFDEVVN 145

Query: 160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 219
           +     I + F A WC  C+    +  +   EL         + L   D           
Sbjct: 146 D--ADIILVEFYAPWCGHCKKLAPEYEKAAKELS---KRSPPIPLAKVDAT--------- 191

Query: 220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGK 263
                       A  DL + F++ G P L +    G+    NG 
Sbjct: 192 ------------AETDLAKRFDVSGYPTLKIF-RKGRPYDYNGP 222

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE-------F 214
             K + L F  + C  CR     +           N     VL++   D+K         
Sbjct: 46  HNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKI 102

Query: 215 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 259
             N +      +  +    Q     F     P  VLI  +G  ++
Sbjct: 103 MENGTERTLRTVGDKWSYLQR--VKFGANAQPFYVLIDNEGNPLN 145

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 35/102 (34%)

Query: 170 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 229
           FG    P C     QL ++ ++  +  +    + LV  D+                    
Sbjct: 30  FGRDEDPVCL----QLDDILSKTSSDLSKMAAIYLVDVDQT------------------- 66

Query: 230 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 271
                   + F+I  IP+ V           NG+ M   YG+
Sbjct: 67  ----AVYTQYFDISYIPSTVFF--------FNGQHMKVDYGS 96

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
           L + G K + + FSA WC PCK   P    L +          VIF+  D D+      E
Sbjct: 15  LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS------NVIFLEVDVDDCQDVASE 68

Query: 94  EHFKCMP 100
              K MP
Sbjct: 69  SEVKSMP 75

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
            SS    +I + F A WC+PC           +          V  +  D D +     +
Sbjct: 35  FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN-------YYYVTLVDIDVDIHPKLNDQ 87

Query: 94  EHFKCMP 100
            + K +P
Sbjct: 88  HNIKALP 94

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
           L     K + + F A WC PCKT  P   +L +       + + IF+  D D+      +
Sbjct: 28  LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-------KYDAIFVKVDVDKLEETARK 80

Query: 94  EHFKCMP 100
            +   MP
Sbjct: 81  YNISAMP 87

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
           LS  G +   + F+   C PC    P    + +         + +F+  D  +       
Sbjct: 16  LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP------QAVFLEVDVHQCQGTAAT 69

Query: 94  EHFKCMP 100
            +    P
Sbjct: 70  NNISATP 76

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
           L + G K + + FSA WC P K   P    L +          VIF+  D D+      E
Sbjct: 26  LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS------NVIFLEVDVDDCQDVASE 79

Query: 94  EHFKCMP 100
              K MP
Sbjct: 80  CEVKSMP 86

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 27/115 (23%)

Query: 162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYN--ELKTTANHCFEVVLVSTDRDHKEFDLNHS 219
            G+ + +YF +  CP C+   +    V +   +       F V  VS D           
Sbjct: 18  HGRMVMVYFHSEHCPYCQQMNT---FVLSDPGVSRLLEARFVVASVSVDTP--------- 65

Query: 220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 274
                         Q+L R + + G P  V + P        G+ +        F
Sbjct: 66  ------------EGQELARRYRVPGTPTFVFLVPKAGAWEEVGR-LFGSRPRAEF 107

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          G K I L+F  +W  PCK        +++ +    +   V F+S D DEN
Sbjct: 20 GDKLIVLYFHTSWAEPCKALKQ----VFEAISNEPSNSNVSFLSIDADEN 65

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 37  LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
           L+   GK + L F A WC PCK  +P+LV+L            V+ +  D DE      E
Sbjct: 15  LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF-----ADNVVVLKVDVDECEDIAME 69

Query: 94  EHFKCMP 100
            +   MP
Sbjct: 70  YNISSMP 76

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 36/118 (30%)

Query: 168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 227
           L+     C  C     ++  V             V  +                      
Sbjct: 23  LFIKTENCGVCDVMLRKVNYVLENYN-------YVEKIEILLQDM--------------- 60

Query: 228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 285
                 Q++   + +   P ++L          NGKE++      +    E  I   E
Sbjct: 61  ------QEIAGRYAVFTGPTVLLF--------YNGKEILRESRFISLENLERTIQLFE 104

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          ++   G+ I + F A WC PC+   P++  L   +       EV F   D D+N
Sbjct: 14 INENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP------EVEFAKVDVDQN 61

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 52/249 (20%)

Query: 44  TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103
            + +F   + C+ C     QL QL   L     +L    + FD  E   +E  K      
Sbjct: 25  KLIVFVRKDHCQYCD----QLKQLVQELSELTDKLSYEIVDFDTPEG--KELAKRYRIDR 78

Query: 104 VPFDETLHKKLRIRKRREELKAIDDSKRQGGK----LEQLLAIEGRDYVLSRDHRKITVS 159
            P          I +  ++          G +    LE ++ +   +  L  D  K  + 
Sbjct: 79  AP-------ATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLM-DETKQAIR 130

Query: 160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 219
            +      L F    CP C        +   E            +V       E+     
Sbjct: 131 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI----EY----- 181

Query: 220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTES 279
                          +    +N+  +P +V+          NG++ +   GA      + 
Sbjct: 182 --------------PEWADQYNVMAVPKIVIQV--------NGEDRVEFEGAYPE---KM 216

Query: 280 RIAEIETAL 288
            + ++ +AL
Sbjct: 217 FLEKLLSAL 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.94
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.9
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.9
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.9
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.9
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.9
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.9
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.9
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.89
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.89
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.89
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.89
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.88
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.88
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.88
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.88
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.88
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.88
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.88
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.88
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.87
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.87
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.87
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.87
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.87
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.86
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.86
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.86
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.86
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.86
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.86
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.85
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.85
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.85
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.85
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.85
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.85
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.85
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.85
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.85
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.84
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.84
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.84
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.84
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.84
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.84
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.84
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.84
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.84
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.84
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.84
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.84
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.84
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.84
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.84
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.83
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.83
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.83
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.83
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.83
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.83
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.83
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.83
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.83
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.73
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.83
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.83
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.83
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.83
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.83
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.83
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.83
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.72
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.82
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.82
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.82
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.82
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.82
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.82
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.82
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.82
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.82
3me7_A	170	Putative uncharacterized protein; electron transfe	99.82
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.82
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.82
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.82
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.82
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.82
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.81
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.81
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.81
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.81
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.81
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.81
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.8
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.8
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.8
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.8
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.8
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.8
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.8
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.79
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.79
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.79
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.78
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.78
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.77
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.77
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.76
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.76
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.72
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.67
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.67
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.66
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.66
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.65
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.64
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.64
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.62
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.6
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.59
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.59
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.57
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.57
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.56
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.56
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.55
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.55
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.55
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.55
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.55
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.54
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.54
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.54
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.53
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.53
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.52
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.52
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.52
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.52
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.52
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.52
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.52
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.51
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.51
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.5
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.5
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.5
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.49
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.49
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.49
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.49
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.49
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.49
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.49
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.48
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.48
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.48
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.48
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.48
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.48
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.48
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.48
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.47
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.21
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.47
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.47
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.47
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.47
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.47
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.47
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.47
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.47
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.46
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.46
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.46
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.46
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.46
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.45
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.45
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.45
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.45
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.45
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.44
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.44
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.44
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.43
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.43
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.43
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.43
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.43
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.43
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.43
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.42
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.42
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.42
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.42
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.42
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.42
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.42
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.42
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.42
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.42
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.42
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.41
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.41
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.41
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.41
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.41
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.41
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.41
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.4
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.4
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.4
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.4
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.4
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.39
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.39
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.39
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.38
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.38
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.38
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.37
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.37
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.37
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.36
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.36
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.36
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.35
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.35
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.35
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.35
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.35
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.33
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.33
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.33
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.33
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.33
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.33
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.32
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.32
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.32
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.32
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.31
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.31
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.31
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.31
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.31
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.31
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.31
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.3
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.3
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.29
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.29
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.29
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.29
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.29
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.94
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.94
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.28
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.28
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.27
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.27
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.27
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.27
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.27
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.27
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.27
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.27
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.26
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.26
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.25
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.25
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.25
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.25
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.24
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.23
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.23
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.23
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.23
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.23
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.23
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.22
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.21
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.21
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.21
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.21
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.21
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.21
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.21
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.2
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.2
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.2
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.2
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.2
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.2
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.2
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.19
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.19
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.19
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.82
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.19
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.19
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.19
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.18
3me7_A	170	Putative uncharacterized protein; electron transfe	99.18
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.18
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.18
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.17
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.16
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.16
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.16
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.16
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.15
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.15
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.14
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.14
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.14
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.14
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.14
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.14
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.14
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.14
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.14
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.14
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.14
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.13
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.13
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.13
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.13
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.13
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.12
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.12
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.12
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.12
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.12
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.11
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.11
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.11
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.11
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.11
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.11
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.11
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.1
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.1
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.1
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.1
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.1
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.09
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.09
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.68
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.09
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.09
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.09
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.08
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.08
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.08
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.07
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.07
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.07
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.07
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.06
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.06
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.06
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.06
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.06
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.06
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.06
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.06
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.06
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.06
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.05
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.05
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.05
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.04
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.04
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.04
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.03
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.03
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.03
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.03
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.03
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.03
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.03
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.03
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.03
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.02
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.02
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.02
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.01
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.01
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.01
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.01
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.0
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.0
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.0
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.99
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.99
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.98
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.98
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.98
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.98
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.98
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.97
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.96
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.96
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.96
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.96
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.94
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.92
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.91
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.44
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.88
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.88
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.87
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.87
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.87
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.86
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.86
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.84
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.84
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.84
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.84
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.84
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.83
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.82
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.79
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.78
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.76
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.76
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.75
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.74
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	98.74
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.72
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.72
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.68
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.66
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.64
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.63
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.6
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	98.57
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.55
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.54
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.51
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.5
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.5
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.46
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.43
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.42
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.41
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.36
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.36
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.34
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.34
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.33
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.32
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.29
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.27
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.27
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.26
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.25
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.22
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.2
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.18
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.1
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.09
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.04
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.91
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.89
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.89
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.88
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.85
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.84
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.83
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.82
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.74
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.73
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.66
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	97.66
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.64
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.63
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.61
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.56
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.53
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.53
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.52
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.5
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.49
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.48
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.45
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.44
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.41
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.4
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.4
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.37
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.33
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.3

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.94  E-value=3.2e-26  Score=201.35  Aligned_cols=200  Identities=18%  Similarity=0.301  Sum_probs=141.2

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +...+++ +.....+||+++|+|||+||++|+.+.|.+.++++.+++.+..+.++.|+++.+. .+++.+++..+|++.+
T Consensus        17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~   95 (241)
T 3idv_A           17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS-VLASRFDVSGYPTIKI   95 (241)
T ss_dssp             EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH-HHHHhcCCCcCCEEEE
Confidence            4555555 5555567999999999999999999999999999999877644445555544333 4677777778888876


Q ss_pred             --ChHHHHHHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHH
Q 018726          107 --DETLHKKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQ  184 (351)
Q Consensus       107 --~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~  184 (351)
                        +|+.. ++.+....+.+...+.......      ..+.+......+...+......+++++|+||++||++|+.+.|.
T Consensus        96 ~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~  168 (241)
T 3idv_A           96 LKKGQAV-DYEGSRTQEEIVAKVREVSQPD------WTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPE  168 (241)
T ss_dssp             EETTEEE-ECCSCSCHHHHHHHHHHHHSTT------CCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHH
T ss_pred             EcCCCcc-cccCcccHHHHHHHHhhccCcc------cccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHH
Confidence              55433 3455444444544443322110      01122333345555554333357899999999999999999999


Q ss_pred             HHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          185 LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       185 l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++++++.. ...++.++.|+++..                       ..++++|+|.++||++++ ++|+++..
T Consensus       169 ~~~~a~~~~~-~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pt~~~~-~~g~~~~~  219 (241)
T 3idv_A          169 YEKAAKELSK-RSPPIPLAKVDATAE-----------------------TDLAKRFDVSGYPTLKIF-RKGRPYDY  219 (241)
T ss_dssp             HHHHHHHHHT-SSSCCCEEEEETTTC-----------------------HHHHHHTTCCSSSEEEEE-ETTEEEEC
T ss_pred             HHHHHHHHhc-cCCcEEEEEEECCCC-----------------------HHHHHHcCCcccCEEEEE-ECCeEEEe
Confidence            9999999974 234588988888864                       689999999999999999 46776543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.90  E-value=1e-23  Score=170.11  Aligned_cols=120  Identities=12%  Similarity=0.203  Sum_probs=106.2

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHH---HHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE---VYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~---l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      ..+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+   +++++++   .++.|++|+.|.+.+.
T Consensus         5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~---~~~~vi~i~~d~~~~~   81 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA---KKLKVLSIYPDEELDE   81 (142)
T ss_dssp             TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT---TSEEEEEEECSSCHHH
T ss_pred             hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc---CCeEEEEEEcCCCHHH
Confidence            467999999999 99999999999999999999999999999999999999   9999986   7899999999999999


Q ss_pred             HHhhhccCCceeeccCchhh--HHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      +.++++.++. .++...|..  ..+.+.|++.++|+++|||++|+|++++
T Consensus        82 ~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           82 WKKHRNDFAK-EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             HHHHGGGSCT-TSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred             HHHHHHhccc-ccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence            9999987763 333333333  3478999999999999999999999884

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.90  E-value=1.5e-23  Score=169.46  Aligned_cols=124  Identities=38%  Similarity=0.651  Sum_probs=113.2

Q ss_pred             hhccCCC-cEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          140 LAIEGRD-YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       140 ~g~~~pd-f~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      ++..+|+ |++ +.+|+.+++++++||++||+||++||++|+.++|.|+++++++++  ..++.|++|++|.+.+.+.++
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~v~~d~~~~~~~~~   80 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE--KKNFEVMLISWDESAEDFKDY   80 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHH
T ss_pred             hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeCCCCHHHHHHH
Confidence            5678999 999 999999999999999999999999999999999999999999972  258999999999999999999


Q ss_pred             hccCCceeeccCc-hhhHHHHHHcCcCceeeEEEEC-CCCceEeccccce
Q 018726          218 HSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEM  265 (351)
Q Consensus       218 ~~~~~~~~~~~~~-d~~~~~~~~~~i~~~P~~~lid-~~G~v~~~~~~~~  265 (351)
                      .+.++|..+|+.. +....+++.|++.++|+++||| ++|+|++++++..
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~  130 (144)
T 1i5g_A           81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM  130 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHH
T ss_pred             HHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhh
Confidence            9999999999876 5678999999999999999999 9999999976443

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.90  E-value=1e-23  Score=174.80  Aligned_cols=124  Identities=34%  Similarity=0.724  Sum_probs=113.1

Q ss_pred             HhhhccCCCc-Ee-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          138 QLLAIEGRDY-VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       138 ~~~g~~~pdf-~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      ..+|.++|+| .+ +.+| .+++++++||++||+||++||++|+.++|.|++++++|++  ..++.|++|++|.+.+++.
T Consensus        22 ~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~--~~~v~vv~v~~d~~~~~~~   98 (165)
T 3s9f_A           22 SGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD--SKNFEIILASWDEEEDDFN   98 (165)
T ss_dssp             CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHH
T ss_pred             hhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhcc--CCCeEEEEEecCCCHHHHH
Confidence            4578899999 78 8999 9999999999999999999999999999999999999973  2589999999999999999


Q ss_pred             hhhccCCceeeccCchhh-HHHHHHcCcCceeeEEEECCC-CceEeccccc
Q 018726          216 LNHSIMPWLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPD-GKTISTNGKE  264 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~P~~~lid~~-G~v~~~~~~~  264 (351)
                      ++++.++|..+++..+.. ..+++.|++.++|+++|||++ |+|++++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~  149 (165)
T 3s9f_A           99 AYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARH  149 (165)
T ss_dssp             HHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred             HHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHH
Confidence            999999999999877654 799999999999999999998 9999997643

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.90  E-value=3.9e-23  Score=167.49  Aligned_cols=123  Identities=37%  Similarity=0.676  Sum_probs=112.2

Q ss_pred             hhhccCCC-cEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRD-YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pd-f~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .++..+|+ |++ +.+| .+++++++||++||+||++||++|+.++|.|.++++++++  ..++.|++|++|.+.+.+.+
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vv~v~~d~~~~~~~~   79 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE--SKNFEVVFCTWDEEEDGFAG   79 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHH
T ss_pred             chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhh--cCCeEEEEEeCCCCHHHHHH
Confidence            35788999 999 9999 9999999999999999999999999999999999999972  25899999999999999999


Q ss_pred             hhccCCceeeccCc-hhhHHHHHHcCcCceeeEEEEC-CCCceEeccccc
Q 018726          217 NHSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKE  264 (351)
Q Consensus       217 ~~~~~~~~~~~~~~-d~~~~~~~~~~i~~~P~~~lid-~~G~v~~~~~~~  264 (351)
                      +.+.++|..+|+.. +....+++.|++.++|+++|+| ++|++++++++.
T Consensus        80 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~  129 (146)
T 1o8x_A           80 YFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA  129 (146)
T ss_dssp             HHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred             HHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchh
Confidence            99999999998876 5677999999999999999999 899999987644

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.90  E-value=2.5e-23  Score=167.65  Aligned_cols=118  Identities=17%  Similarity=0.314  Sum_probs=106.0

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHH---HHHHhhcccCCceEEEEEeCCCCHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE---VYNELKTTANHCFEVVLVSTDRDHKEF  214 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~---l~~~~~~~~~~~~~vv~v~~d~~~~~~  214 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+   +++++++   .++.|++|++|.+.+.+
T Consensus         2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~---~~~~~v~v~~d~~~~~~   78 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN---GTLRVLAIYPDENREEW   78 (142)
T ss_dssp             CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH---TSEEEEEEECSSCHHHH
T ss_pred             CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc---CCeEEEEEEecCCHHHH
Confidence            36899999999 99999999999999999999999999999999999998   9999986   78999999999999999


Q ss_pred             HhhhccCCceeeccCchhhHHHHH--HcCcCceeeEEEECCCCceEec
Q 018726          215 DLNHSIMPWLAIPYEDRARQDLCR--IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .++.+.+++ .+|...|....+..  .|++.++|++++||++|+|+++
T Consensus        79 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (142)
T 3ewl_A           79 ATKAVYMPQ-GWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK  125 (142)
T ss_dssp             HHHHTTSCT-TCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred             HHHHHHcCC-CcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence            999987773 55666666666665  9999999999999999999985

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.90  E-value=4.1e-23  Score=168.26  Aligned_cols=117  Identities=21%  Similarity=0.443  Sum_probs=106.8

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  218 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  218 (351)
                      +|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++   .++.|+.|++|.+.+.+.++.
T Consensus         2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~v~~d~~~~~~~~~~   78 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFM   78 (151)
T ss_dssp             CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHH
T ss_pred             CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHH
Confidence            5889999999 999999999999999999999999999999999999999999985   689999999998888888888


Q ss_pred             ccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          219 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       219 ~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+++ .++...|....+.+.|++.++|+++++|++|+++.+
T Consensus        79 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  119 (151)
T 2f9s_A           79 KSYGV-NFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV  119 (151)
T ss_dssp             HHHTC-CSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             HHcCC-CceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence            87663 567777777899999999999999999999999987

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.90  E-value=2.4e-23  Score=168.17  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=100.3

Q ss_pred             hhhccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhh
Q 018726          139 LLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  218 (351)
Q Consensus       139 ~~g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  218 (351)
                      .+|.++|+|+++.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|.+.+++.+++
T Consensus         8 ~~G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~vv~vs~d~~~~~~~~~~   84 (143)
T 4fo5_A            8 NPGDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGP---DKIAMCSISMDEKESIFTETV   84 (143)
T ss_dssp             STTSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCT---TTEEEEEEECCSCHHHHHHHH
T ss_pred             CCcccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCc---CCEEEEEEEccCCHHHHHHHH
Confidence            46899999999889999999999999999999999999999999999999999986   689999999999888888888


Q ss_pred             ccCC--c-eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          219 SIMP--W-LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       219 ~~~~--~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      +..+  | ..+....+....+++.|++.++|+++|||++|+|++++
T Consensus        85 ~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           85 KIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HHHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             HHhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence            8544  3 22333333356899999999999999999999999884

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.89  E-value=7.8e-23  Score=165.12  Aligned_cols=123  Identities=37%  Similarity=0.700  Sum_probs=111.9

Q ss_pred             hhhccCCCc-Ee-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDY-VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf-~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|..+|+| .+ +.+| .+++++++||++||+||++||++|+.++|.|.+++++++.  ..++.|++|++|.+.+++.+
T Consensus         3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~i~~d~~~~~~~~   79 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISWDENESDFHD   79 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHH
T ss_pred             chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeCCCCHHHHHH
Confidence            468899997 88 9999 9999999999999999999999999999999999999972  26899999999999999999


Q ss_pred             hhccCCceeeccCc-hhhHHHHHHcCcCceeeEEEEC-CCCceEeccccc
Q 018726          217 NHSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKE  264 (351)
Q Consensus       217 ~~~~~~~~~~~~~~-d~~~~~~~~~~i~~~P~~~lid-~~G~v~~~~~~~  264 (351)
                      +++.++|..+++.. +....+.+.|++.++|+++++| ++|+++++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~  129 (144)
T 1o73_A           80 YYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART  129 (144)
T ss_dssp             HHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred             HHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhh
Confidence            99999999999876 5577899999999999999999 899999987543

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.89  E-value=1.2e-22  Score=165.70  Aligned_cols=118  Identities=21%  Similarity=0.300  Sum_probs=105.1

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|.+.+.+.++
T Consensus         4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~   80 (152)
T 2lrn_A            4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD---KGFTIYGVSTDRREEDWKKA   80 (152)
T ss_dssp             CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT---TTEEEEEEECCSCHHHHHHH
T ss_pred             cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHH
Confidence            36889999999 999999999999999999999999999999999999999999985   67999999999888888888


Q ss_pred             hccCCceeeccCchh---hHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          218 HSIMPWLAIPYEDRA---RQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~---~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+..+ ..++...|.   ...+++.|++.++|+++|||++|+++.+
T Consensus        81 ~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (152)
T 2lrn_A           81 IEEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAK  125 (152)
T ss_dssp             HHHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             HHHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEe
Confidence            87554 234444444   6789999999999999999999999988

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.89  E-value=1.2e-23  Score=172.91  Aligned_cols=117  Identities=17%  Similarity=0.208  Sum_probs=97.6

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      +|+++|+|++ +.+|+++++++++||++||+|| ++||++|+.++|.|+++++++++   .++.+++|+.|. .+..+++
T Consensus         6 vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~---~~~~~v~vs~d~-~~~~~~~   81 (157)
T 4g2e_A            6 IGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ---VNAVVLGISVDP-PFSNKAF   81 (157)
T ss_dssp             TTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGG---CSSEEEEEESSC-HHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccc---cCceEeeecccc-hhHHHHH
Confidence            6999999999 9999999999999999999998 99999999999999999999986   889999999984 5566667


Q ss_pred             hccCCceeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          218 HSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      .+.++ +.+|+..|.+..+++.||+.           ..|++||||++|+|+++.
T Consensus        82 ~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~  135 (157)
T 4g2e_A           82 KEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKW  135 (157)
T ss_dssp             HHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEE
Confidence            66665 46778888889999999973           478999999999999873

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=5e-22  Score=161.72  Aligned_cols=120  Identities=23%  Similarity=0.337  Sum_probs=105.6

Q ss_pred             hhhccCCCcEe-cCCCcceeec--ccCCcEEEEEEecCCChh--hHHhHHHHHHHHHHh-hcccCCceEEEEEeCCCCHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPP--CRSFTSQLIEVYNEL-KTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~--~~~gk~vll~F~a~~C~~--C~~~~~~l~~l~~~~-~~~~~~~~~vv~v~~d~~~~  212 (351)
                      .+|.++|+|++ +.+|++++++  +++||++||+||++||++  |+.++|.|.+++++| ++   .++.|++|++|.+.+
T Consensus         6 ~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~---~~~~~v~v~~d~~~~   82 (150)
T 3fw2_A            6 EIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN---KYIGMLGISLDVDKQ   82 (150)
T ss_dssp             STTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC---SSEEEEEEECCSCHH
T ss_pred             cCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC---CCeEEEEEEcCCCHH
Confidence            46999999999 9999999999  999999999999999999  999999999999999 64   679999999999888


Q ss_pred             HHHhhhccCC--ceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      .+.++.+.++  |..+....+....+.+.|++.++|+++|||++|+|+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           83 QWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence            9999988655  333333323367999999999999999999999999883

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.88  E-value=3.1e-22  Score=163.53  Aligned_cols=120  Identities=18%  Similarity=0.326  Sum_probs=104.2

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      ...|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|...+.+++
T Consensus         9 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~vv~i~~d~~~~~~~~   85 (152)
T 2lrt_A            9 KIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYAS---QGFEIYQISLDGDEHFWKT   85 (152)
T ss_dssp             SSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECSCCHHHHHH
T ss_pred             hccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHH
Confidence            345788999999 999999999999999999999999999999999999999999986   6799999999998888888


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +...++|..+.........+.+.|++.++|+++|||++|+|+++
T Consensus        86 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  129 (152)
T 2lrt_A           86 SADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR  129 (152)
T ss_dssp             HHTTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEE
T ss_pred             HHhCCCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEe
Confidence            87776654443332222359999999999999999999999988

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.88  E-value=1.1e-22  Score=177.06  Aligned_cols=183  Identities=13%  Similarity=0.141  Sum_probs=121.5

Q ss_pred             CCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceeeec--ChHHH-HH
Q 018726           39 SCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAVPF--DETLH-KK  113 (351)
Q Consensus        39 ~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~~~--~~~~~-~~  113 (351)
                      ..+++++++.||++ ||++|+.+.|.++++++. .+   .+.++.|+++.. ...+++.+++..+|++.+  +|+.. .+
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~---~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~   94 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD---KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVR   94 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT---TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEE
T ss_pred             hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC---ceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEE
Confidence            35677889999999 999999999999998864 22   266666666631 235777788888888887  55432 34


Q ss_pred             HhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCccee-ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHh
Q 018726          114 LRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNEL  192 (351)
Q Consensus       114 l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~  192 (351)
                      +.+.....++.........      .-+ ..  .  .++...+. +....+++++|.||++||++|+.+.|.+.++++++
T Consensus        95 ~~G~~~~~~l~~~l~~~l~------~~~-~~--~--~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~  163 (226)
T 1a8l_A           95 YFGLPAGHEFAAFLEDIVD------VSR-EE--T--NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIEN  163 (226)
T ss_dssp             EESCCCTTHHHHHHHHHHH------HHH-TC--C--CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred             EeccCcHHHHHHHHHHHHh------hcC-CC--C--CCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhc
Confidence            4442222223222211110      000 00  0  11111111 12233456699999999999999999999999998


Q ss_pred             hcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          193 KTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       193 ~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.....++.++.|+++..                       ..++++|+|.++||++++ ++|+.+.+
T Consensus       164 ~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  207 (226)
T 1a8l_A          164 TKAGKGKILGDMVEAIEY-----------------------PEWADQYNVMAVPKIVIQ-VNGEDRVE  207 (226)
T ss_dssp             HHTTCCCEEEEEEEGGGC-----------------------HHHHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred             ccccCCcEEEEEEEcccC-----------------------HHHHHhCCCcccCeEEEE-eCCceeEE
Confidence            731124688888888753                       678999999999998888 78887765

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.88  E-value=3.4e-22  Score=162.79  Aligned_cols=140  Identities=21%  Similarity=0.345  Sum_probs=116.7

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  218 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  218 (351)
                      +|.++|+|.+ + +|+.+++++++||++||+||++||++|+.+++.|.++++++++   .++.|++|++|.+.+.+.++.
T Consensus         5 ~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~~   80 (152)
T 3gl3_A            5 KGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA---KGFQVVAVNLDAKTGDAMKFL   80 (152)
T ss_dssp             TTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSHHHHHHHH
T ss_pred             CCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEECCCCHHHHHHHH
Confidence            5889999999 8 9999999999999999999999999999999999999999986   679999999999888888888


Q ss_pred             ccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCcCC
Q 018726          219 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  296 (351)
Q Consensus       219 ~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p  296 (351)
                      +.++ ..+++..|....+.+.|++.++|+++|||++|+++++.       .|..     ....++|.+.+++.+...+
T Consensus        81 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~-----~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A           81 AQVP-AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQH-------VGFR-----PADKEALEQQILAALGGNE  145 (152)
T ss_dssp             HHSC-CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEE-------ESCC-----TTTHHHHHHHHHHHTC---
T ss_pred             HHcC-CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEE-------ccCC-----CcCHHHHHHHHHHHHcccc
Confidence            8777 35666677778999999999999999999999999873       3422     1234556566666554433

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.88  E-value=1.6e-22  Score=165.88  Aligned_cols=117  Identities=16%  Similarity=0.208  Sum_probs=101.7

Q ss_pred             hhccCCCcEe-c--CCCcceeecccCCcEEEEEEecCCChhhHHh-HHHHHHHHHHhhcccCCceEEEEEeCC------C
Q 018726          140 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTD------R  209 (351)
Q Consensus       140 ~g~~~pdf~~-~--~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~~~~~vv~v~~d------~  209 (351)
                      .|.++|+|++ +  .+|+.+++++++||++||+||++||++|+.+ +|.|.+++++|++   .++.|++|++|      .
T Consensus         2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~~   78 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE---DKVAVLGLHTVFEHHEAM   78 (158)
T ss_dssp             CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGGS
T ss_pred             CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCc---CCEEEEEEEecccccccC
Confidence            3788999999 6  3789999999999999999999999999996 9999999999985   68999999985      4


Q ss_pred             CHHHHHhhhccCCceeeccCchhhH-----HHHHHcCcCceeeEEEECCCCceEec
Q 018726          210 DHKEFDLNHSIMPWLAIPYEDRARQ-----DLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+.+.++.+.++. .+|...|...     .+++.|++.++|+++|||++|+|+++
T Consensus        79 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  133 (158)
T 3eyt_A           79 TPISLKAFLHEYRI-KFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH  133 (158)
T ss_dssp             CHHHHHHHHHHTTC-CSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred             CHHHHHHHHHHcCC-CceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence            67888888887663 3555555444     69999999999999999999999987

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.88  E-value=6.7e-23  Score=165.94  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++   .++.|++|++|.+.+++.++
T Consensus         6 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~   82 (148)
T 3hcz_A            6 LLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA---KGIQVYAANIERKDEEWLKF   82 (148)
T ss_dssp             CTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGG---GTEEEEEEECCSSSHHHHHH
T ss_pred             CCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCEEEEEEEecCCHHHHHHH
Confidence            46999999999 999999999999999999999999999999999999999999986   57999999999888889998


Q ss_pred             hccCCceeeccCchhhHH--HHHHcCcCceeeEEEECCCCceEec
Q 018726          218 HSIMPWLAIPYEDRARQD--LCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~~~--~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+.+++..++...|....  +.+.|++.++|+++++|++|+++.+
T Consensus        83 ~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  127 (148)
T 3hcz_A           83 IRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAK  127 (148)
T ss_dssp             HHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred             HHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence            887765445555555555  9999999999999999999999987

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.88  E-value=3.3e-22  Score=164.96  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=106.7

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcE-EEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKT-IGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~-vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      +|.++|+|++ +.+|+.+++++++||+ +||+|| ++||++|+.++|.|.+++++|++   .++.|++|++| +.+.+++
T Consensus         4 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~d-~~~~~~~   79 (161)
T 3drn_A            4 VGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD---YDVVVIGVSSD-DINSHKR   79 (161)
T ss_dssp             TTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT---TCEEEEEEESC-CHHHHHH
T ss_pred             CCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEeCC-CHHHHHH
Confidence            6899999999 9999999999999997 999999 99999999999999999999986   67999999998 5778888


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCc----eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~----~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++ ..+++..|....+++.|++.+    +|+++|||++|+|+++.
T Consensus        80 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~  127 (161)
T 3drn_A           80 FKEKYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIY  127 (161)
T ss_dssp             HHHHTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEE
T ss_pred             HHHHhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEE
Confidence            888776 347777777889999999999    99999999999999883

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.88  E-value=1.8e-22  Score=165.90  Aligned_cols=119  Identities=13%  Similarity=0.238  Sum_probs=103.7

Q ss_pred             HhhhccCCCcEe-c-CCCcceeecccCCcEEEEEEecCCChhhHHh-HHHHHHHHHHhhcccCCceEEEEEeCC------
Q 018726          138 QLLAIEGRDYVL-S-RDHRKITVSELAGKTIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTD------  208 (351)
Q Consensus       138 ~~~g~~~pdf~~-~-~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~~~~~vv~v~~d------  208 (351)
                      .+.|.++|+|.+ + .+|+.+++++++||++||+||++||++|+.+ +|.|.+++++|++   .++.|++|+++      
T Consensus         3 ~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~   79 (160)
T 3lor_A            3 SLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---SQVQVIGLHSVFEHHDV   79 (160)
T ss_dssp             -CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGG
T ss_pred             ccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCc---CCcEEEEEecccccccc
Confidence            346889999999 6 8999999999999999999999999999995 9999999999985   67999999984      


Q ss_pred             CCHHHHHhhhccCCceeeccCchhhHH------HHHHcCcCceeeEEEECCCCceEec
Q 018726          209 RDHKEFDLNHSIMPWLAIPYEDRARQD------LCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+.+.++++.+.++ ..+|...|....      +++.|++.++|+++|||++|+|+++
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  136 (160)
T 3lor_A           80 MTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV  136 (160)
T ss_dssp             SCHHHHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             CCHHHHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence            57788888888776 345665555555      9999999999999999999999987

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.88  E-value=4.4e-22  Score=162.14  Aligned_cols=118  Identities=23%  Similarity=0.391  Sum_probs=106.4

Q ss_pred             hhccCC-CcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          140 LAIEGR-DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       140 ~g~~~p-df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      +|.++| +|++ +.+|+.+++++++||++||+||++||++|+.+.+.|.++++++++   .++.+++|++|.+.+.+.++
T Consensus         5 ~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~   81 (152)
T 2lja_A            5 SGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAG---KDIHFVSLSCDKNKKAWENM   81 (152)
T ss_dssp             TTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT---SSEEEEEEECCSCHHHHHHH
T ss_pred             cCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc---CCeEEEEEEccCcHHHHHHH
Confidence            688999 9999 999999999999999999999999999999999999999999975   68999999999988888888


Q ss_pred             hccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          218 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+..++...++..|....+.+.|++.++|+++|+|++|+++.+
T Consensus        82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  124 (152)
T 2lja_A           82 VTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISA  124 (152)
T ss_dssp             HHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred             HHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence            8866654455555666789999999999999999999999988

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.87  E-value=3.8e-22  Score=172.93  Aligned_cols=119  Identities=15%  Similarity=0.277  Sum_probs=107.2

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCc-EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------C
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------R  209 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk-~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~  209 (351)
                      .+|.++|+|++ +.+|+.+++++++|| ++||+||++||++|+.++|.|++++++|++   .++.|++|++|       .
T Consensus        33 ~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Vs~d~~~~~~~d  109 (218)
T 3u5r_E           33 TLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG---QGLAVVAINSNDAQAFPEE  109 (218)
T ss_dssp             CTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT---TTEEEEEEECSCTTTCGGG
T ss_pred             CCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCcccccccC
Confidence            46999999999 999999999999999 599999999999999999999999999986   67999999997       5


Q ss_pred             CHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          210 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++++.+.++ +.+|+..|....+++.|++.++|+++|||++|+|++++
T Consensus       110 ~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g  160 (218)
T 3u5r_E          110 TLERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHG  160 (218)
T ss_dssp             SHHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred             CHHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEec
Confidence            6778888887666 46777777778999999999999999999999999874

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.87  E-value=9.6e-22  Score=162.25  Aligned_cols=117  Identities=22%  Similarity=0.394  Sum_probs=102.5

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      .+|.++|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++   .++.|+.|++|.+.+.+.++
T Consensus         9 ~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~d~~~~~~~~~   85 (165)
T 3or5_A            9 ARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAVNEQLPNVKNY   85 (165)
T ss_dssp             CCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEECSCCHHHHHHH
T ss_pred             cCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHH
Confidence            46889999999 999999999999999999999999999999999999999999985   67999999999888888888


Q ss_pred             hccCCceeeccCchhhHHHHHHc------CcCceeeEEEECCCCceEec
Q 018726          218 HSIMPWLAIPYEDRARQDLCRIF------NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       218 ~~~~~~~~~~~~~d~~~~~~~~~------~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+..+ +.++...+.. .+.+.|      ++.++|+++|+|++|+|+.+
T Consensus        86 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  132 (165)
T 3or5_A           86 MKTQG-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGV  132 (165)
T ss_dssp             HHHHT-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred             HHHcC-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence            87655 2344444433 777777      79999999999999999987

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.87  E-value=7.2e-22  Score=159.81  Aligned_cols=118  Identities=19%  Similarity=0.326  Sum_probs=104.9

Q ss_pred             hhhccCCCcEe-cCCCcceeec--ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHh-hcccCCceEEEEEeCCCCHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNEL-KTTANHCFEVVLVSTDRDHKEF  214 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~--~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~-~~~~~~~~~vv~v~~d~~~~~~  214 (351)
                      .+|.++|+|.+ +.+|+.++++  +++||++||+||++||++|+.++|.|.++++++ ++   .++.|++|++|.+.+.+
T Consensus         6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~v~~d~~~~~~   82 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN---KNFAMLGISLDIDREAW   82 (148)
T ss_dssp             CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC---TTEEEEEEECCSCHHHH
T ss_pred             cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---CCeEEEEEECCCCHHHH
Confidence            46899999999 9999999999  999999999999999999999999999999999 64   67999999999998899


Q ss_pred             HhhhccCCceeeccCch---hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          215 DLNHSIMPWLAIPYEDR---ARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d---~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .++.+.++. .++...+   ....+.+.|++.++|+++++|++|+++.+
T Consensus        83 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  130 (148)
T 3fkf_A           83 ETAIKKDTL-SWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILAR  130 (148)
T ss_dssp             HHHHHHTTC-CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHHHHcCC-CceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEe
Confidence            988886653 3333333   36799999999999999999999999988

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.87  E-value=6.5e-22  Score=161.45  Aligned_cols=118  Identities=20%  Similarity=0.430  Sum_probs=106.8

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.+++.|.++++++++   .++.|++|++|.+ .+.+.+
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~   79 (154)
T 3kcm_A            3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG---KPFRMLCVSIDEGGKVAVEE   79 (154)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEEECCTTHHHHHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEEcCCcchHHHHH
Confidence            56899999999 999999999999999999999999999999999999999999985   6899999999987 677777


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+.++ ..+++..|....+.+.|++.++|+++|||++|+++++
T Consensus        80 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  122 (154)
T 3kcm_A           80 FFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKK  122 (154)
T ss_dssp             HHHHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred             HHHHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence            777665 3466667777889999999999999999999999987

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.87  E-value=5.9e-22  Score=163.57  Aligned_cols=137  Identities=19%  Similarity=0.263  Sum_probs=114.3

Q ss_pred             hhhccCCCcE--e-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018726          139 LLAIEGRDYV--L-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  214 (351)
Q Consensus       139 ~~g~~~pdf~--~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  214 (351)
                      .+|.++|+|+  + +.+|+++++++++||++||+||+ +||++|+.++|.|++++++|++   .++.|++|++| +.+..
T Consensus         8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~d-~~~~~   83 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK---AGAKILGVSRD-SVKSH   83 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH---TTCEEEEEESS-CHHHH
T ss_pred             ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH---CCCEEEEEeCC-CHHHH
Confidence            4689999999  9 99999999999999999999998 9999999999999999999987   78999999998 66777


Q ss_pred             HhhhccCCceeeccCchhhHHHHHHcCcCc------------eeeEEEECCCCceEeccccceeeccCCcCCCCchhhHH
Q 018726          215 DLNHSIMPWLAIPYEDRARQDLCRIFNIKG------------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA  282 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~------------~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~  282 (351)
                      .++.+.++ ..+|+..|....+++.|++..            +|++||||++|+|++..       .+.    .....++
T Consensus        84 ~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-------~~~----~~~~~~~  151 (163)
T 3gkn_A           84 DNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-------RKV----KVAGHAD  151 (163)
T ss_dssp             HHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-------CSC----CSTTHHH
T ss_pred             HHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-------cCC----CcccCHH
Confidence            77777555 456777777889999999977            89999999999999873       121    1234466


Q ss_pred             HHHHHHHHh
Q 018726          283 EIETALKKE  291 (351)
Q Consensus       283 ~l~~~~~~~  291 (351)
                      ++.+.+++.
T Consensus       152 ~il~~l~~l  160 (163)
T 3gkn_A          152 AVLAALKAH  160 (163)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.86  E-value=3.1e-23  Score=171.71  Aligned_cols=117  Identities=20%  Similarity=0.304  Sum_probs=103.0

Q ss_pred             hhccCCCcEe-cCCCcceeeccc--CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~--~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      +|+++|+|++ +.+|++++++++  +||+++|+|| ++|||+|..++|.|++++++|++   .++.+++|+.| +.+..+
T Consensus         7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~---~~v~vv~is~d-~~~~~~   82 (164)
T 4gqc_A            7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISVD-SPWCLK   82 (164)
T ss_dssp             TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG---SSSEEEEEESS-CHHHHH
T ss_pred             CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc---cCceEEEecCC-CHHHHH
Confidence            6999999999 999999999998  8999999988 99999999999999999999987   88999999998 456666


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcC----------ceeeEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIK----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~----------~~P~~~lid~~G~v~~~~  261 (351)
                      ++.+..+ +.+|+..|++..+++.||+.          ..|++||||++|+|++++
T Consensus        83 ~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~  137 (164)
T 4gqc_A           83 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW  137 (164)
T ss_dssp             HHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE
T ss_pred             HHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEE
Confidence            6766655 46788888889999999983          468999999999999873

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.86  E-value=7.1e-22  Score=165.44  Aligned_cols=117  Identities=19%  Similarity=0.217  Sum_probs=103.4

Q ss_pred             HHhhhccCCCcEe-cCCC--cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          137 EQLLAIEGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g--~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      ...+|.++|+|++ +.+|  +.+++++++||++||+||++||++|+.++|.|++++++       ++.|++|+++.+.+.
T Consensus        29 ~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~vs~~d~~~~  101 (176)
T 3kh7_A           29 SALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------GVVIYGINYKDDNAA  101 (176)
T ss_dssp             TTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCEEEEEEESCCHHH
T ss_pred             ccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------CCEEEEEeCCCCHHH
Confidence            3567999999999 8888  88999999999999999999999999999999988763       589999999989999


Q ss_pred             HHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++.+.+++....+..|....+.+.|++.++|+++|||++|+|+++
T Consensus       102 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  148 (176)
T 3kh7_A          102 AIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHK  148 (176)
T ss_dssp             HHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred             HHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence            99999887744333455667899999999999999999999999987

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.86  E-value=1.5e-21  Score=159.11  Aligned_cols=119  Identities=22%  Similarity=0.299  Sum_probs=103.3

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-CHHHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHKEFD  215 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~~~~  215 (351)
                      +++|.++|+|++ +.+|+.+++++++||++||+||++||++|+.+++.|.++++++++   .++.|++|+.+. +.+.+.
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~   78 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---KNFQVLAVAQPIDPIESVR   78 (153)
T ss_dssp             --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG---TTEEEEEEECTTSCHHHHH
T ss_pred             CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCeEEEEEecCCCCHHHHH
Confidence            467899999999 999999999999999999999999999999999999999999986   689999999864 456777


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.+.++ ..++...+....+.+.|++.++|+++++|++|+++.+
T Consensus        79 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~  122 (153)
T 2l5o_A           79 QYVKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKT  122 (153)
T ss_dssp             HHHHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred             HHHHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEE
Confidence            7777665 3455556666789999999999999999999999876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.86  E-value=4.1e-21  Score=156.44  Aligned_cols=115  Identities=16%  Similarity=0.282  Sum_probs=94.2

Q ss_pred             ccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccC
Q 018726          142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM  221 (351)
Q Consensus       142 ~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  221 (351)
                      .++|+|....+|+.+++++++||++||+||++||++|+.++|.|.+++++|+.   .++.|++|++|. .+++.++.+.+
T Consensus         3 ~pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~---~~v~vv~v~~d~-~~~~~~~~~~~   78 (151)
T 3raz_A            3 LSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK---GSVDMVGIALDT-SDNIGNFLKQT   78 (151)
T ss_dssp             ----CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TTEEEEEEESSC-HHHHHHHHHHS
T ss_pred             CCcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCC-hHHHHHHHHHc
Confidence            35666666689999999999999999999999999999999999999999965   789999999984 56777777765


Q ss_pred             C--ceeeccCchhhHHHHHHcC--cCceeeEEEECCCCceEec
Q 018726          222 P--WLAIPYEDRARQDLCRIFN--IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       222 ~--~~~~~~~~d~~~~~~~~~~--i~~~P~~~lid~~G~v~~~  260 (351)
                      +  |..+....+....+.+.|+  +.++|+++|||++|+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  121 (151)
T 3raz_A           79 PVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQT  121 (151)
T ss_dssp             CCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred             CCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEE
Confidence            5  2222223334678999999  9999999999999999987

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.86  E-value=4.3e-21  Score=152.75  Aligned_cols=114  Identities=22%  Similarity=0.371  Sum_probs=102.9

Q ss_pred             cCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEe-----CCCCHHHHHh
Q 018726          143 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS-----TDRDHKEFDL  216 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~-----~d~~~~~~~~  216 (351)
                      ++|+|.+ +.+|+.+++++++||++||+||++||++|+.+++.|.+++++++    .++.++.|.     .+.+.+.+.+
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~v~i~~~~~~~~~~~~~~~~   76 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG----DDYVVLTVVSPGHKGEQSEADFKN   76 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT----TTEEEEEEECTTSTTCCCHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC----CCcEEEEEEcCCCCchhhHHHHHH
Confidence            4799999 99999999999999999999999999999999999999999865    689999994     4557789999


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+.+++..++...+....+.+.|++.++|+++++|++|+++.+
T Consensus        77 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  120 (138)
T 4evm_A           77 WYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKT  120 (138)
T ss_dssp             HHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             HHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEe
Confidence            99988876778777778899999999999999999999999987

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.86  E-value=3.4e-21  Score=162.49  Aligned_cols=119  Identities=24%  Similarity=0.385  Sum_probs=105.3

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|.+ .+.+.+
T Consensus        35 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~  111 (186)
T 1jfu_A           35 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---PNFEVVAINIDTRDPEKPKT  111 (186)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB---TTEEEEEEECCCSCTTHHHH
T ss_pred             cCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCCHHHHHH
Confidence            45889999999 999999999999999999999999999999999999999999975   7899999999965 456677


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcC----ceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIK----GIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~----~~P~~~lid~~G~v~~~  260 (351)
                      +.+.++...+|+..|....+.+.|++.    ++|+++|||++|+|+++
T Consensus       112 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A          112 FLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             HHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             HHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            777666545677677778899999985    89999999999999987

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.85  E-value=3.8e-21  Score=154.84  Aligned_cols=118  Identities=19%  Similarity=0.361  Sum_probs=104.8

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKE  213 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~  213 (351)
                      ..+|.++|+|.+ +.+|+.+++++ +||++||+||++||++|+.++|.|.+++++++.   .++.|+.|++|.   +.+.
T Consensus         9 ~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~   84 (145)
T 3erw_A            9 EKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS---DSVKLVTVNLVNSEQNQQV   84 (145)
T ss_dssp             ---CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC---SSEEEEEEECGGGSSCHHH
T ss_pred             ccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CCEEEEEEEccCCcCCHHH
Confidence            457899999999 99999999999 999999999999999999999999999999975   689999999986   7788


Q ss_pred             HHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++.+.++ ..+++..+....+.+.|++.++|+++++|++|+++.+
T Consensus        85 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  130 (145)
T 3erw_A           85 VEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKT  130 (145)
T ss_dssp             HHHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred             HHHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence            888888766 4567777777899999999999999999999999887

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.85  E-value=3.5e-21  Score=158.33  Aligned_cols=138  Identities=12%  Similarity=0.147  Sum_probs=113.2

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCc-EEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  214 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  214 (351)
                      ..+|.++|+|++ +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.+++++|++   .++.|++|++| +.+..
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vv~is~d-~~~~~   84 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN---DDSAALAISVG-PPPTH   84 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS---SSEEEEEEESC-CHHHH
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCcEEEEEeCC-CHHHH
Confidence            346999999999 999999999999998 9999998 99999999999999999999975   68999999998 45677


Q ss_pred             HhhhccCCceeeccCchh--hHHHHHHcCcC----cee--eEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHH
Q 018726          215 DLNHSIMPWLAIPYEDRA--RQDLCRIFNIK----GIP--ALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET  286 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~--~~~~~~~~~i~----~~P--~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~  286 (351)
                      .++.+.+++ .+|+..|.  ...+++.|++.    ++|  +++|||++|+|+++.       .|..   ..+..++++.+
T Consensus        85 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~-------~g~~---~~~~~~~~l~~  153 (160)
T 1xvw_A           85 KIWATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE-------MKQP---GEVRDQRLWTD  153 (160)
T ss_dssp             HHHHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE-------ECCT---TCCCCHHHHHH
T ss_pred             HHHHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEE-------ecCC---CCCCCHHHHHH
Confidence            777776664 56666663  67899999998    999  999999999999883       3422   12334666666


Q ss_pred             HHHH
Q 018726          287 ALKK  290 (351)
Q Consensus       287 ~~~~  290 (351)
                      .+++
T Consensus       154 ~l~~  157 (160)
T 1xvw_A          154 ALAA  157 (160)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.85  E-value=3.6e-21  Score=158.04  Aligned_cols=116  Identities=15%  Similarity=0.303  Sum_probs=102.0

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      ..+|.++|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++   .++.+++|+.|..   +.+
T Consensus        15 ~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~---~~~   88 (158)
T 3hdc_A           15 VRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK---GDLVVLAVNVEKR---FPE   88 (158)
T ss_dssp             CCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST---TSEEEEEEECSSS---CCG
T ss_pred             cCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc---CCeEEEEEeCCHH---HHH
Confidence            456999999999 999999999999999999999999999999999999999999976   7899999999974   344


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+..+ ..+++..|....+.+.|++.++|+++|||++|+|+.+
T Consensus        89 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  131 (158)
T 3hdc_A           89 KYRRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQR  131 (158)
T ss_dssp             GGGGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEE
Confidence            444444 3466666777899999999999999999999999988

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.85  E-value=4e-21  Score=161.70  Aligned_cols=120  Identities=16%  Similarity=0.161  Sum_probs=104.3

Q ss_pred             HHhhhccCCCcEe-cC--CCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCce------EEEEEeC
Q 018726          137 EQLLAIEGRDYVL-SR--DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF------EVVLVST  207 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~--~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~------~vv~v~~  207 (351)
                      ....|.++|+|.+ +.  +|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++      .|++|++
T Consensus        30 ~~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~~~~~v~~v~v~~  106 (183)
T 3lwa_A           30 DEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA---AGNGDTPGGTVLGINV  106 (183)
T ss_dssp             CGGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH---CC---CCSEEEEEEEC
T ss_pred             ccccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHh---cCCCccCCcEEEEEEC
Confidence            3456889999999 88  9999999999999999999999999999999999999999986   556      9999999


Q ss_pred             CC-CHHHHHhhhccCCceeeccCchhhHHHHHHc---CcCceeeEEEECCCCceEec
Q 018726          208 DR-DHKEFDLNHSIMPWLAIPYEDRARQDLCRIF---NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       208 d~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~i~~~P~~~lid~~G~v~~~  260 (351)
                      |. +.+.+.++.+.++ +.+|...|....+.+.|   ++.++|+++|||++|+|+++
T Consensus       107 d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A          107 RDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             SCCCHHHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred             CCCCHHHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence            98 7888888888766 34666666667777777   58999999999999999987

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.85  E-value=6e-21  Score=165.46  Aligned_cols=120  Identities=12%  Similarity=0.184  Sum_probs=103.0

Q ss_pred             HhhhccCCCcEe-cC--CC--cceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726          138 QLLAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  210 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~--~g--~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  210 (351)
                      ..+|.++|+|++ +.  +|  ++++++++ +||++||+|| ++||++|+.++|.|++++++|++   .+++||+|++|. 
T Consensus        25 l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~---~~v~vv~Is~D~-  100 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN---KNVELLGISVDS-  100 (221)
T ss_dssp             -CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH---TTEEEEEEESSC-
T ss_pred             CCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-
Confidence            357999999999 77  89  99999999 9999999999 99999999999999999999986   789999999984 


Q ss_pred             HHHHHhhhccC----C--ceeeccCchhhHHHHHHcCc-----CceeeEEEECCCCceEecc
Q 018726          211 HKEFDLNHSIM----P--WLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       211 ~~~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~i-----~~~P~~~lid~~G~v~~~~  261 (351)
                      .+...++.+..    +  .+.+|+..|....+++.|++     ..+|++||||++|+|+++.
T Consensus       101 ~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~  162 (221)
T 2c0d_A          101 VYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT  162 (221)
T ss_dssp             HHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence            44455555544    1  35667777777899999999     4799999999999999883

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.85  E-value=6.9e-21  Score=151.50  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=103.1

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      |.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.+.|.+++++++     ++.++.|++|.+.+.+.++.+
T Consensus         2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~   76 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLDQVPAMQEFVN   76 (136)
T ss_dssp             CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----CeEEEEEeCCCCHHHHHHHHH
Confidence            567899999 99999999999999999999999999999999999999998874     689999999998999999988


Q ss_pred             cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .++...++...+....+.+.|++.++|+++++|++|+++ +
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~  116 (136)
T 1zzo_A           77 KYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-V  116 (136)
T ss_dssp             HTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-E
T ss_pred             HcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-E
Confidence            777546677667778999999999999999999999998 5

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.85  E-value=2.4e-21  Score=180.55  Aligned_cols=184  Identities=16%  Similarity=0.201  Sum_probs=121.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-ChhhHHHHHhcCC--ceeeec--ChHHHHHHh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DENGFEEHFKCMP--WLAVPF--DETLHKKLR  115 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-~~~~~~~~~~~~~--~~~~~~--~~~~~~~l~  115 (351)
                      ..++++|.||++||++|+.+.|.+.+++++++++   +.++.++++. +...+.+.++...  +|++.+  .++...++.
T Consensus       134 ~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~  210 (361)
T 3uem_A          134 EIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK  210 (361)
T ss_dssp             SCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CCEEC
T ss_pred             CCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcccccC
Confidence            3568899999999999999999999999999876   4455444442 1345777777655  788776  334333443


Q ss_pred             ---hhhhhhHHhhhccccccccchHHhhhccCCC----cEe-cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHH
Q 018726          116 ---IRKRREELKAIDDSKRQGGKLEQLLAIEGRD----YVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLI  186 (351)
Q Consensus       116 ---~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pd----f~~-~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~  186 (351)
                         +....+.+..++.....+...+.....+.|.    -.+ .++++.+....+ .+|+++|.|||+||++|+.+.|.|.
T Consensus       211 ~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~  290 (361)
T 3uem_A          211 PESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWD  290 (361)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred             CCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHH
Confidence               3344445555544332221111111112221    112 444554443322 5799999999999999999999999


Q ss_pred             HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCC
Q 018726          187 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD  254 (351)
Q Consensus       187 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~  254 (351)
                      +++++++.  ..++.++.|+.+..                       .  +++|+|.++||+++++++
T Consensus       291 ~la~~~~~--~~~v~~~~vd~~~~-----------------------~--~~~~~v~~~Pt~~~~~~~  331 (361)
T 3uem_A          291 KLGETYKD--HENIVIAKMDSTAN-----------------------E--VEAVKVHSFPTLKFFPAS  331 (361)
T ss_dssp             HHHHHTTT--CSSEEEEEEETTTC-----------------------B--CSSCCCCSSSEEEEECSS
T ss_pred             HHHHHhcc--CCcEEEEEEECCcc-----------------------c--hhhcCCcccCeEEEEECC
Confidence            99999974  23577777766643                       1  567999999999999654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.85  E-value=8e-21  Score=160.55  Aligned_cols=118  Identities=24%  Similarity=0.268  Sum_probs=103.0

Q ss_pred             hhccCCCcEe-cCCCc----ceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          140 LAIEGRDYVL-SRDHR----KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~----~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      +|.++|+|++ +.+|+    .+++++++||++||+|| ++||++|+.++|.|.+++++|++   .++.|++|++|. .+.
T Consensus         3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~d~-~~~   78 (187)
T 1we0_A            3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK---LGVEVYSVSTDT-HFV   78 (187)
T ss_dssp             TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHH
T ss_pred             CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHH---cCCEEEEEECCC-HHH
Confidence            5889999999 88898    99999999999999999 99999999999999999999986   689999999986 455


Q ss_pred             HHhhhccCC---ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ..++.+.+.   -..+++..|....+++.|++.      ++|+++|||++|+|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~  135 (187)
T 1we0_A           79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE  135 (187)
T ss_dssp             HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEE
Confidence            666666552   245666667678999999998      999999999999999883

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.85  E-value=1.4e-20  Score=153.63  Aligned_cols=136  Identities=19%  Similarity=0.267  Sum_probs=112.9

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC--CCCHHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST--DRDHKEFD  215 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~--d~~~~~~~  215 (351)
                      .+|.++|+|.+ +.+|+.+++++++ |++||+||++||++|+.++|.|.++++++      ++.|++|++  +.+.+.+.
T Consensus         6 ~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~------~v~~v~v~~d~~~~~~~~~   78 (154)
T 3ia1_A            6 KPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET------GVPFYVISREPRDTREVVL   78 (154)
T ss_dssp             CSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH------CCCEEEEECCTTCCHHHHH
T ss_pred             CCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc------CCeEEEEeCCCcccHHHHH
Confidence            46889999999 9999999999999 99999999999999999999999999988      367999999  56788899


Q ss_pred             hhhccCCceeeccCch---hhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhc
Q 018726          216 LNHSIMPWLAIPYEDR---ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG  292 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d---~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~  292 (351)
                      ++.+.+++ .+|...+   ....+.+.|++.++|++++||++|+++.+.       .|...       .+++.+.+++..
T Consensus        79 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~~-------~~~l~~~l~~~~  143 (154)
T 3ia1_A           79 EYMKTYPR-FIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALF-------AGRAG-------REALLDALLLAG  143 (154)
T ss_dssp             HHHTTCTT-EEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEE-------ESBCC-------HHHHHHHHHHTT
T ss_pred             HHHHHcCC-CcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEE-------cCCCC-------HHHHHHHHHhcc
Confidence            99988874 5666555   678999999999999999999999999873       34321       445666666665


Q ss_pred             CcCC
Q 018726          293 DALP  296 (351)
Q Consensus       293 ~~~p  296 (351)
                      +.-+
T Consensus       144 ~~~~  147 (154)
T 3ia1_A          144 ADLE  147 (154)
T ss_dssp             CCC-
T ss_pred             Cccc
Confidence            5444

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.84  E-value=4.5e-20  Score=152.07  Aligned_cols=118  Identities=19%  Similarity=0.380  Sum_probs=100.0

Q ss_pred             cCCCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcc-cCCceEEEEEeCCC---CHHHHHh
Q 018726          143 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDR---DHKEFDL  216 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~---~~~~~~~  216 (351)
                      .+|+|++ +.+|+++++++++||++||+||++||++ |+.++|.|+++++++++. ...+++|++|++|.   +.+.+++
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~   81 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   81 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence            4799999 9999999999999999999999999998 999999999999999741 11489999999986   3567777


Q ss_pred             hhccCC--ceeeccCchhhHHHHHHcCcCcee---------------eEEEECCCCceEec
Q 018726          217 NHSIMP--WLAIPYEDRARQDLCRIFNIKGIP---------------ALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~--~~~~~~~~d~~~~~~~~~~i~~~P---------------~~~lid~~G~v~~~  260 (351)
                      +.+.++  |..+....|....+++.|++..+|               +++|||++|+|+.+
T Consensus        82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  142 (164)
T 2ggt_A           82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  142 (164)
T ss_dssp             HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred             HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence            777554  444433456677899999999999               89999999999987

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.84  E-value=2.3e-21  Score=162.82  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=101.3

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      ..+|.++|+|++ +.+|+++++++++||++||+|| ++||++|+.++|.|++++++|++   .+++|++|+.|. .+...
T Consensus        25 d~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~---~~~~vv~Vs~D~-~~~~~  100 (179)
T 3ixr_A           25 DTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ---INATVLGVSRDS-VKSHD  100 (179)
T ss_dssp             CBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESCC-HHHHH
T ss_pred             cccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHH
Confidence            344455999999 9999999999999999999998 99999999999999999999986   789999999984 55566


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcCc------------eeeEEEECCCCceEec
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIKG------------IPALVLIGPDGKTIST  260 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~------------~P~~~lid~~G~v~~~  260 (351)
                      ++.+.++ +.+|+..|....+++.|++..            .|++||||++|+|++.
T Consensus       101 ~~~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~  156 (179)
T 3ixr_A          101 SFCAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA  156 (179)
T ss_dssp             HHHHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred             HHHHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence            6666544 456777777889999999864            5889999999999987

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.84  E-value=3.3e-21  Score=159.29  Aligned_cols=117  Identities=16%  Similarity=0.269  Sum_probs=105.9

Q ss_pred             HHhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------
Q 018726          137 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------  208 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------  208 (351)
                      ...+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++     ++.|++|++|       
T Consensus        10 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----~v~vv~i~~d~~~~~~~   84 (165)
T 3ha9_A           10 SEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----EISVIAIDFWTAEALKA   84 (165)
T ss_dssp             HHHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----TEEEEEEECCSHHHHHH
T ss_pred             cccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----CcEEEEEEecccccccc
Confidence            3567999999999 99999999999999999999999999999999999999999874     6999999999       


Q ss_pred             -----------CCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEe
Q 018726          209 -----------RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       209 -----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~  259 (351)
                                 .+.+.++++.+.+++..++...| ...+.+.|++.++|+++|||++|++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           85 LGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             HTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             cccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence                       78888999888776546666666 789999999999999999999999998

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.84  E-value=1.1e-20  Score=163.02  Aligned_cols=119  Identities=15%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             hhhccCCCcEe-cC--CC--cceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726          139 LLAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  211 (351)
Q Consensus       139 ~~g~~~pdf~~-~~--~g--~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  211 (351)
                      .+|.++|+|++ +.  +|  ++++++++ +||++||+|| ++||++|+.++|.|.+++++|++   .+++||+|++| +.
T Consensus        22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~D-~~   97 (213)
T 2i81_A           22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE---RNVELLGCSVD-SK   97 (213)
T ss_dssp             CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH---TTEEEEEEESS-CH
T ss_pred             cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCC-CH
Confidence            56999999999 77  89  89999999 9999999999 99999999999999999999986   78999999998 45


Q ss_pred             HHHHhhhccCC------ceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSIMP------WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~~  261 (351)
                      +...++.+...      .+.+|+..|....+++.|++.     .+|++||||++|+|+++.
T Consensus        98 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~  158 (213)
T 2i81_A           98 YTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL  158 (213)
T ss_dssp             HHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence            55666665441      356777778788999999999     899999999999999883

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.84  E-value=1.7e-20  Score=158.61  Aligned_cols=117  Identities=12%  Similarity=0.170  Sum_probs=104.2

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CC
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RD  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~  210 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++   . +.|++|++|       .+
T Consensus         8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~-~~~v~v~~d~~~~~~~d~   83 (188)
T 2cvb_A            8 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG---K-VAFVGINANDYEKYPEDA   83 (188)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT---T-EEEEEEECCCTTTCGGGS
T ss_pred             CCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc---C-eEEEEEEcCccccccccC
Confidence            46889999999 999999999999999999999999999999999999999999985   5 999999996       35


Q ss_pred             HHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          211 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+.+.++.+.++ ..+|+..|....+++.|++.++|+++|||++|+|+++
T Consensus        84 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           84 PEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             HHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred             HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence            577777777665 3566666777889999999999999999999999988

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.84  E-value=4e-21  Score=155.28  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=103.4

Q ss_pred             hhccCCCcEe---cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CH
Q 018726          140 LAIEGRDYVL---SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH  211 (351)
Q Consensus       140 ~g~~~pdf~~---~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~  211 (351)
                      +|.++|+|.+   +.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++   . +.|++|++|.     +.
T Consensus         3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~-~~~~~v~~~~~~~~~~~   78 (148)
T 2b5x_A            3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---Q-LNVVAVHMPRSEDDLDP   78 (148)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---T-SEEEEEECCCSTTTSSH
T ss_pred             CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC---C-cEEEEEEcCCCccccCH
Confidence            5889999987   689999999999999999999999999999999999999999974   4 9999999886     66


Q ss_pred             HHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +++.++.+.++ ..+|+..+....+++.|++.++|+++++|++|+++.+
T Consensus        79 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  126 (148)
T 2b5x_A           79 GKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF  126 (148)
T ss_dssp             HHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             HHHHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence            78888888766 3566666767889999999999999999999999987

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.84  E-value=1.5e-20  Score=149.73  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=101.0

Q ss_pred             ccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhcc
Q 018726          142 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI  220 (351)
Q Consensus       142 ~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  220 (351)
                      .++|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|.+.+.+.++.+.
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~   76 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----AVTFVGIATRADVGAMQSFVSK   76 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----CcEEEEEEcCCCHHHHHHHHHH
Confidence            36799999 99999999999999999999999999999999999999998874     6899999999888888888887


Q ss_pred             CCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          221 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       221 ~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +++ .++...|....+.+.|++.++|+++++|++|+++ +
T Consensus        77 ~~~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~  114 (136)
T 1lu4_A           77 YNL-NFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-F  114 (136)
T ss_dssp             HTC-CSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-E
T ss_pred             cCC-CceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-E
Confidence            663 5666667778999999999999999999999998 5

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.84  E-value=1.5e-20  Score=158.82  Aligned_cols=119  Identities=18%  Similarity=0.187  Sum_probs=101.9

Q ss_pred             hhhccCCCcEe-cC-CC--cceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          139 LLAIEGRDYVL-SR-DH--RKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       139 ~~g~~~pdf~~-~~-~g--~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      .+|.++|+|++ +. +|  +.+++++++||++||+||+ +||++|+.++|.|++++++|++   .+++|++|++|. .+.
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~---~~v~vv~Is~d~-~~~   77 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVSTDT-HFT   77 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHH
T ss_pred             CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHH
Confidence            36899999999 77 58  8999999999999999995 9999999999999999999986   789999999984 455


Q ss_pred             HHhhhccCC---ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      .+++.+.++   -+.+|+..|....+++.||+.      .+|++||||++|+|+++.
T Consensus        78 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~  134 (186)
T 1n8j_A           78 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  134 (186)
T ss_dssp             HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence            566665551   245677777778999999987      379999999999999884

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.84  E-value=1e-20  Score=160.67  Aligned_cols=118  Identities=16%  Similarity=0.185  Sum_probs=103.3

Q ss_pred             hhccCCCcEe-cC--CC--cceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          140 LAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       140 ~g~~~pdf~~-~~--~g--~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      +|.++|+|++ +.  +|  +.++++++ +||++||+|| ++||++|+.++|.|.+++++|++   .+++|++|++|. .+
T Consensus         2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~Is~d~-~~   77 (192)
T 2h01_A            2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSVDS-KF   77 (192)
T ss_dssp             CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEESSC-HH
T ss_pred             CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEeCC-HH
Confidence            5889999999 77  89  89999999 9999999999 99999999999999999999986   789999999984 55


Q ss_pred             HHHhhhccCC------ceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIMP------WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~~  261 (351)
                      ...++.+.+.      ...+|+..|....+++.|++.     .+|+++|||++|+|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~  137 (192)
T 2h01_A           78 THLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL  137 (192)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence            5566665441      356777777778999999999     899999999999999883

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.84  E-value=7.5e-21  Score=157.62  Aligned_cols=117  Identities=11%  Similarity=0.096  Sum_probs=102.2

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+++++++++||++||+||++| |++|+.++|.|++++++|     .+++|++|++|. .+..++
T Consensus        19 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-----~~~~vv~is~d~-~~~~~~   92 (167)
T 2jsy_A           19 KVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-----GDVNVYTISADL-PFAQAR   92 (167)
T ss_dssp             CTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-----SSCEEEEEECSS-GGGTSC
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-----CCCEEEEEECCC-HHHHHH
Confidence            46899999999 9999999999999999999999999 999999999999999998     368999999984 456666


Q ss_pred             hhccCCceeeccCch-hhHHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDR-ARQDLCRIFNIKG------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d-~~~~~~~~~~i~~------~P~~~lid~~G~v~~~~  261 (351)
                      +.+.+++..+|+..| ....+.+.|++..      .|+++|||++|+|+++.
T Consensus        93 ~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~  144 (167)
T 2jsy_A           93 WCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE  144 (167)
T ss_dssp             CGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred             HHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence            777666436777777 6788999999986      49999999999999884

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.84  E-value=2.1e-20  Score=160.05  Aligned_cols=119  Identities=17%  Similarity=0.191  Sum_probs=103.0

Q ss_pred             hhhccCCCcEe-cC--CC--cceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          139 LLAIEGRDYVL-SR--DH--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       139 ~~g~~~pdf~~-~~--~g--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      .+|.++|+|++ +.  +|  +.+++++++||++||+|| ++||++|+.+++.|.+++++|++   .+++|++|++|. .+
T Consensus         7 ~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~---~~v~vi~Is~D~-~~   82 (202)
T 1uul_A            7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSMDS-EY   82 (202)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSC-HH
T ss_pred             cCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HH
Confidence            46899999999 66  78  899999999999999999 99999999999999999999986   789999999985 44


Q ss_pred             HHHhhhccC----C--ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ...++.+.+    +  ...+|+..|....+++.|++.      ++|+++|||++|+|+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~  143 (202)
T 1uul_A           83 SHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT  143 (202)
T ss_dssp             HHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence            555555544    1  356777777778999999999      999999999999999883

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=161.81  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=101.7

Q ss_pred             hhhccCCCcEe-cC---CCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          139 LLAIEGRDYVL-SR---DHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       139 ~~g~~~pdf~~-~~---~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      .+|.++|+|++ +.   +|+++++++++||++||+|| ++||++|+.++|.|++++++|++   .+++||+|++|. .+.
T Consensus        20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~---~~v~vv~Is~D~-~~~   95 (211)
T 2pn8_A           20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSVDS-QFT   95 (211)
T ss_dssp             CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSC-HHH
T ss_pred             CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHH
Confidence            46899999999 54   45899999999999999999 99999999999999999999986   789999999984 445


Q ss_pred             HHhhhccC----C--ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ..++.+..    +  ...+|+..|....+++.|++.      .+|++||||++|+|+++.
T Consensus        96 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~  155 (211)
T 2pn8_A           96 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  155 (211)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence            55555544    1  356777777778999999994      699999999999999883

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.84  E-value=1.4e-20  Score=163.39  Aligned_cols=122  Identities=16%  Similarity=0.271  Sum_probs=101.5

Q ss_pred             HHhhhccCCCcEe-cC-CC--cceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726          137 EQLLAIEGRDYVL-SR-DH--RKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  211 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~-~g--~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  211 (351)
                      ...+|.++|+|++ +. ++  +++++++++||++||+||+ +||++|+.++|.|++++++|++   .+++||+|++|...
T Consensus        39 ~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~---~~v~vv~Is~D~~~  115 (222)
T 3ztl_A           39 VLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS---RNCQVIACSTDSQY  115 (222)
T ss_dssp             -CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHH
T ss_pred             cccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEECCCHH
Confidence            3457999999999 65 55  9999999999999999996 9999999999999999999986   78999999998632


Q ss_pred             --HHHHhhhccC---CceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          212 --KEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 --~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                        .+|.+.++..   ....+|+..|....+.+.|++.      .+|++||||++|+|+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~  176 (222)
T 3ztl_A          116 SHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT  176 (222)
T ss_dssp             HHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred             HHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence              3444333222   1466777777778999999998      899999999999999884

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.84  E-value=1.8e-20  Score=159.44  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=102.1

Q ss_pred             hhccCCCcEe-cCC-------------C--cceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEE
Q 018726          140 LAIEGRDYVL-SRD-------------H--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEV  202 (351)
Q Consensus       140 ~g~~~pdf~~-~~~-------------g--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~v  202 (351)
                      +|.++|+|++ +.+             |  +.+++++++||++||+|| ++||++|+.++|.|.+++++|++   .++.|
T Consensus         6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~v   82 (195)
T 2bmx_A            6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQI   82 (195)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEE
T ss_pred             CCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH---CCCEE
Confidence            6889999999 776             6  899999999999999999 99999999999999999999985   68999


Q ss_pred             EEEeCCCCHHHHHhhhccC---CceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEecc
Q 018726          203 VLVSTDRDHKEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       203 v~v~~d~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~~  261 (351)
                      ++|++|. .+...++.+.+   ....+++..|....+++.|++.     ++|+++|||++|+|+++.
T Consensus        83 v~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~  148 (195)
T 2bmx_A           83 LGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS  148 (195)
T ss_dssp             EEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred             EEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEE
Confidence            9999985 55566666554   1245666667778999999999     999999999999999883

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.84  E-value=1.5e-20  Score=157.86  Aligned_cols=140  Identities=15%  Similarity=0.133  Sum_probs=102.0

Q ss_pred             HHhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC------
Q 018726          137 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR------  209 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~------  209 (351)
                      .+..|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|.      
T Consensus        11 ~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~~~   87 (180)
T 3kij_A           11 LKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP---SHFSVLAFPCNQFGESEP   87 (180)
T ss_dssp             CCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT---TSEEEEEEECCCSTTCCC
T ss_pred             hcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc---CCeEEEEEECCccccCCC
Confidence            3456788999999 999999999999999999999999999999999999999999986   789999999875      


Q ss_pred             -CHHHHHhhhcc-CCceeeccC-----chhhH-HHHHHc--CcCceee----EEEECCCCceEeccccceeeccCCcCCC
Q 018726          210 -DHKEFDLNHSI-MPWLAIPYE-----DRARQ-DLCRIF--NIKGIPA----LVLIGPDGKTISTNGKEMISLYGAKAFP  275 (351)
Q Consensus       210 -~~~~~~~~~~~-~~~~~~~~~-----~d~~~-~~~~~~--~i~~~P~----~~lid~~G~v~~~~~~~~~~~~g~~~~p  275 (351)
                       +.++++++.+. ++ ..+|..     .+... .+...+  ...++|+    +||||++|+|+.+.       .|.....
T Consensus        88 d~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~-------~g~~~~~  159 (180)
T 3kij_A           88 RPSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW-------RPEEPIE  159 (180)
T ss_dssp             SCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEE-------CTTCCGG
T ss_pred             CCHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEE-------CCCCCHH
Confidence             66777777766 44 233331     11111 111111  1246888    99999999999883       3433333


Q ss_pred             CchhhHHHHHHH
Q 018726          276 FTESRIAEIETA  287 (351)
Q Consensus       276 ~~~~~~~~l~~~  287 (351)
                      ...+.++++.++
T Consensus       160 ~l~~~i~~lL~~  171 (180)
T 3kij_A          160 VIRPDIAALVRQ  171 (180)
T ss_dssp             GTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344445554443

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.83  E-value=7.3e-21  Score=159.99  Aligned_cols=119  Identities=14%  Similarity=0.151  Sum_probs=93.6

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------  209 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------  209 (351)
                      ..+|.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|.       
T Consensus        23 ~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~v~vv~vs~d~~~~~e~~   99 (181)
T 2p31_A           23 MQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP---HHFNVLAFPCNQFGQQEPD   99 (181)
T ss_dssp             ----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCS
T ss_pred             CCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc---CCEEEEEEECcCCCCCCCC
Confidence            346899999999 999999999999999999999999999999999999999999986   679999999974       


Q ss_pred             CHHHHHhhhcc-CCceeeccCc--hhhHHH---HHHcCcCcee-------eEEEECCCCceEec
Q 018726          210 DHKEFDLNHSI-MPWLAIPYED--RARQDL---CRIFNIKGIP-------ALVLIGPDGKTIST  260 (351)
Q Consensus       210 ~~~~~~~~~~~-~~~~~~~~~~--d~~~~~---~~~~~i~~~P-------~~~lid~~G~v~~~  260 (351)
                      +.++++++.+. ++ ..+|...  |.....   .-.|++.++|       ++||||++|+|+++
T Consensus       100 ~~~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A          100 SNKEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             CHHHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             CHHHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence            56677777665 44 3344432  211111   1135677889       99999999999988

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.83  E-value=5.2e-21  Score=161.74  Aligned_cols=116  Identities=20%  Similarity=0.266  Sum_probs=94.3

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHH
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHK  212 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~  212 (351)
                      +.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .+++|++|++|       .+.+
T Consensus        23 ~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~e~~~~~   99 (187)
T 3dwv_A           23 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS---QGFTVLAFPSNQFGGQEPGNEE   99 (187)
T ss_dssp             CCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGG---GTCEEEEEEBCCCSSCSSSBTT
T ss_pred             CCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhh---CCeEEEEEECcccCCCCCCCHH
Confidence            678999999 999999999999999999999999999999999999999999986   67999999998       3567


Q ss_pred             HHHhhhccC-CceeeccCc--hhhH----HHH--------HHcCcCcee---eEEEECCCCceEec
Q 018726          213 EFDLNHSIM-PWLAIPYED--RARQ----DLC--------RIFNIKGIP---ALVLIGPDGKTIST  260 (351)
Q Consensus       213 ~~~~~~~~~-~~~~~~~~~--d~~~----~~~--------~~~~i~~~P---~~~lid~~G~v~~~  260 (351)
                      +++++.+.. + +.+|...  |...    .+.        ..|++..+|   ++||||++|+|+++
T Consensus       100 ~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A          100 EIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             HHHHSCCBCCC-CSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHhccC-CCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence            888888733 3 3344432  1111    111        345677788   99999999999988

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.83  E-value=5.1e-20  Score=152.91  Aligned_cols=116  Identities=19%  Similarity=0.327  Sum_probs=97.4

Q ss_pred             CCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcc-cCCceEEEEEeCCC---CHHHHHhhh
Q 018726          145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDR---DHKEFDLNH  218 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~---~~~~~~~~~  218 (351)
                      |+|++ +.+|+.+++++++||++||+||++||++ |+.++|.|++++++|++. ...+++|++|++|.   +.+.++++.
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~   86 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV   86 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence            89999 9999999999999999999999999998 999999999999999631 12589999999984   466777777


Q ss_pred             ccCC--ceeeccCchhhHHHHHHcCcCcee---------------eEEEECCCCceEec
Q 018726          219 SIMP--WLAIPYEDRARQDLCRIFNIKGIP---------------ALVLIGPDGKTIST  260 (351)
Q Consensus       219 ~~~~--~~~~~~~~d~~~~~~~~~~i~~~P---------------~~~lid~~G~v~~~  260 (351)
                      +.++  |..+....+....+++.|++..+|               +++|||++|+|+.+
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  145 (171)
T 2rli_A           87 QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY  145 (171)
T ss_dssp             HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred             HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence            7654  333333334456899999999988               99999999999987

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.83  E-value=4.5e-21  Score=167.28  Aligned_cols=174  Identities=10%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             CCCCeEEEEE----eCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHH
Q 018726           40 CGGKTICLFF----SANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKK  113 (351)
Q Consensus        40 ~~gk~v~v~F----~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~  113 (351)
                      .++.++++.|    |++||++|+.+.|.+.++++++.+.+ .+.++.|+++.+. .+++.+++..+|++.+  ++....+
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~~-~l~~~~~v~~~Ptl~~~~~~~~~~~   96 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTHK-EETEKYGVDRVPTIVIEGDKDYGIR   96 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTCH-HHHHHTTCCBSSEEEEESSSCCCEE
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCcccH-HHHHHcCCCcCcEEEEECCCcccce
Confidence            3444555555    49999999999999999999985422 2555555444332 5777788888888887  3333334


Q ss_pred             HhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCccee-ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHh
Q 018726          114 LRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNEL  192 (351)
Q Consensus       114 l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~  192 (351)
                      +.|.....++..+......       ++....    .++...+. +....++++++.||++||++|+.+.|.++++++++
T Consensus        97 ~~G~~~~~~l~~~~~~~~~-------~~~~~~----~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~  165 (229)
T 2ywm_A           97 YIGLPAGLEFTTLINGIFH-------VSQRKP----QLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN  165 (229)
T ss_dssp             EESCCCTTHHHHHHHHHHH-------HHTTCC----SCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC
T ss_pred             ecCCccHHHHHHHHHHHHh-------ccCCcc----CCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC
Confidence            4443333333332221110       001111    11111111 11234556689999999999999999999998886


Q ss_pred             hcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          193 KTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       193 ~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                           +++.++.|+++..                       ..++++|+|.++|++++   +|++
T Consensus       166 -----~~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          166 -----DYITSKVIDASEN-----------------------QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             -----TTEEEEEEEGGGC-----------------------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             -----CCeEEEEEECCCC-----------------------HHHHHHcCCcccCEEEE---CCEE
Confidence                 3578888887753                       67899999999999998   6774

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.83  E-value=9.5e-21  Score=156.18  Aligned_cols=116  Identities=22%  Similarity=0.291  Sum_probs=99.6

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CHHH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DHKE  213 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~~~  213 (351)
                      ++..+|  ++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+.   .++.|++|++|.     +.++
T Consensus        16 ~~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~   90 (164)
T 2h30_A           16 VPHTMS--TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF---SSANLITVASPGFLHEKKDGE   90 (164)
T ss_dssp             HHHHHT--TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG---TTSEEEEEECTTSTTCCCTTH
T ss_pred             cCCcCC--ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCcEEEEEEcCCCccccCHHH
Confidence            344555  45 899999999999999999999999999999999999999999976   779999999863     4567


Q ss_pred             HHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++++.+++..++...|....+++.|++.++|+++|||++|+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  137 (164)
T 2h30_A           91 FQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRI  137 (164)
T ss_dssp             HHHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             HHHHHHhCCCCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEE
Confidence            88877776655466666777899999999999999999999999987

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.83  E-value=1.6e-20  Score=160.16  Aligned_cols=118  Identities=13%  Similarity=0.165  Sum_probs=102.8

Q ss_pred             hhccCCCcEe-cC--CCc---ceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726          140 LAIEGRDYVL-SR--DHR---KITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  211 (351)
Q Consensus       140 ~g~~~pdf~~-~~--~g~---~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  211 (351)
                      +|.++|+|++ +.  +|+   +++++++ +||++||+|| ++||++|+.++|.|.+++++|++   .++.|++|++|. .
T Consensus         3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~-~   78 (198)
T 1zof_A            3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSIDS-E   78 (198)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred             CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEECCC-H
Confidence            6889999999 77  898   9999999 9999999999 99999999999999999999986   789999999995 5


Q ss_pred             HHHHhhhccC------CceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~~  261 (351)
                      +...++.+.+      ....+|+..|....+++.|++.     ++|+++|||++|+|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~  139 (198)
T 1zof_A           79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV  139 (198)
T ss_dssp             HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred             HHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence            5566665541      2245677777778999999999     999999999999999883

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.83  E-value=2e-20  Score=155.85  Aligned_cols=121  Identities=20%  Similarity=0.313  Sum_probs=98.9

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCCh-hhHHhHHHHHHHHHHhhcccCCceEEEEEeCC---CCHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTD---RDHKE  213 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d---~~~~~  213 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||+ +|+.+++.|.++++++++ .+.++.|++|++|   .+.+.
T Consensus         8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~-~~~~~~vv~is~d~~~d~~~~   86 (174)
T 1xzo_A            8 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDPENDKPKQ   86 (174)
T ss_dssp             CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCHHH
T ss_pred             ccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhh-cCCcEEEEEEEeCCCCCCHHH
Confidence            46899999999 999999999999999999999999999 899999999999999986 2225999999998   35677


Q ss_pred             HHhhhccCCc--eeeccCchhhHHHHHHc----------------CcCceeeEEEECCCCceEec
Q 018726          214 FDLNHSIMPW--LAIPYEDRARQDLCRIF----------------NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~~~--~~~~~~~d~~~~~~~~~----------------~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++.+.++.  ..+++..|.+..+.+.|                ++..+|+++|||++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  151 (174)
T 1xzo_A           87 LKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  151 (174)
T ss_dssp             HHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             HHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence            8888876652  22255555344444443                46789999999999999987

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.83  E-value=1.9e-20  Score=154.67  Aligned_cols=117  Identities=15%  Similarity=0.066  Sum_probs=98.5

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+++++++++||++||+||+ +||++|+.++|.|++++++|     .+++|++|+.|. .+..++
T Consensus        17 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-----~~v~vv~is~d~-~~~~~~   90 (163)
T 1psq_A           17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSMDL-PFAQKR   90 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSC-HHHHHH
T ss_pred             CCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEECCC-HHHHHH
Confidence            46899999999 99999999999999999999995 99999999999999998877     469999999985 455566


Q ss_pred             hhccCCceeeccCch-hhHHHHHHcCcC----c--eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDR-ARQDLCRIFNIK----G--IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d-~~~~~~~~~~i~----~--~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++...+|+..| ....+++.|++.    +  .|+++|||++|+|+++.
T Consensus        91 ~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  142 (163)
T 1psq_A           91 WCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             HHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             HHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence            665544215566666 678999999987    3  49999999999999883

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=2.9e-22  Score=164.67  Aligned_cols=119  Identities=22%  Similarity=0.354  Sum_probs=105.7

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHH-HHHHhh-cccCCceEEEEEeCCCCHHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE-VYNELK-TTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~-l~~~~~-~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++ .   .++.|++|++|.+.+.+.
T Consensus         8 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~---~~~~vv~v~~d~~~~~~~   84 (159)
T 2ls5_A            8 RIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN---ADFALIGIDRDEPLEKVL   84 (159)
Confidence            46889999999 99999999999999999999999999999999999998 988887 4   789999999997767777


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcC--cCceeeEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFN--IKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~P~~~lid~~G~v~~~~  261 (351)
                      ++.+.++ ..+|+..|....+.+.|+  +.++|+++|||++|+|+++.
T Consensus        85 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~  131 (159)
T 2ls5_A           85 AFAKSTG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT  131 (159)
Confidence            7777666 367888888889999999  56699999999999999873

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.83  E-value=2.4e-20  Score=154.72  Aligned_cols=118  Identities=15%  Similarity=0.221  Sum_probs=93.1

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  210 (351)
                      .+|.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|.       +
T Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~vs~d~~~~~~~~~   83 (170)
T 2p5q_A            7 KNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKD---QGLEILAFPCNQFGEEEPGT   83 (170)
T ss_dssp             ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCTTTTCCCSC
T ss_pred             CCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhcc---CCEEEEEEECCCCCCCCCCC
Confidence            46889999999 999999999999999999999999999999999999999999986   679999999973       5


Q ss_pred             HHHHHhhhc-cCCceeeccC--chhhHH----HH-----HHcCc--Ccee---eEEEECCCCceEec
Q 018726          211 HKEFDLNHS-IMPWLAIPYE--DRARQD----LC-----RIFNI--KGIP---ALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~-~~~~~~~~~~--~d~~~~----~~-----~~~~i--~~~P---~~~lid~~G~v~~~  260 (351)
                      .+.+.++.+ .++ ..+|..  .|....    +.     +.+++  .++|   +++|||++|+|+++
T Consensus        84 ~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           84 NDQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             HHHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence            667777766 443 234443  222211    22     23477  7888   99999999999988

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.83  E-value=9.4e-20  Score=160.36  Aligned_cols=180  Identities=13%  Similarity=0.144  Sum_probs=116.4

Q ss_pred             CCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHHhh-cCCcEEEEEEEecCChh-hHHHHHhcCCceeeec-ChHHHHHHh
Q 018726           41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF-DETLHKKLR  115 (351)
Q Consensus        41 ~gk~v~v~F~a~w--C~~C~~~~p~~~~l~~~~~~-~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~  115 (351)
                      -+++|+|.||++|  |++|+.+.|.+.++++.+.. +| ...+.++.+|.+.. ..++.+++..+|++.+ +|  ..++.
T Consensus        24 ~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~-~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~~g--~~~~~  100 (243)
T 2hls_A           24 MVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNG-GKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGG--EVRWT  100 (243)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETT-EESEEEEEEETTTTHHHHHHTTCCSSSEEEETTT--TEEEE
T ss_pred             CCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCC-CceeEEEEecCCcCHHHHHhcCCCcCCEEEEECC--ceeEc
Confidence            3578999999999  99999999999999987421 12 11144444444333 4677777778888877 44  33443


Q ss_pred             hhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcce-eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhc
Q 018726          116 IRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKI-TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT  194 (351)
Q Consensus       116 ~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~-~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~  194 (351)
                      +......+.........       .+...+  .+  +...+ .+.++.++++++.||++||++|+.+.|.|++++.+++.
T Consensus       101 G~~~~~~l~~fv~~~l~-------~~~~~~--~l--~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~  169 (243)
T 2hls_A          101 GIPAGEEIRALVEVIMR-------LSEDES--GL--EDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWK  169 (243)
T ss_dssp             SCCCTTHHHHHHHHHHH-------HHTTCC--CC--CHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHh-------ccCCCC--CC--CHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHccc
Confidence            32222222222211100       000101  01  00000 12345688999999999999999999999999999842


Q ss_pred             ccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          195 TANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       195 ~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ...+++.+..|+++..                       ..++++|+|.++||+++   +|++++.
T Consensus       170 ~~~~~v~~~~vd~~~~-----------------------~~~~~~~~V~~vPt~~i---~G~~~~~  209 (243)
T 2hls_A          170 QGNPVILSEAVEAYEN-----------------------PDIADKYGVMSVPSIAI---NGYLVFV  209 (243)
T ss_dssp             TTCCCEEEEEEETTTC-----------------------HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred             ccCCcEEEEEEECccC-----------------------HHHHHHcCCeeeCeEEE---CCEEEEe
Confidence            0115688888887754                       57889999999999988   7887643

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.83  E-value=8.5e-21  Score=156.05  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCc--EEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  214 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk--~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  214 (351)
                      .+|.++|+|++ +.+|+++++++++||  ++||+|| ++||++|+.++|.|.+++++|++   .+ +|++|++| +.+..
T Consensus         8 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~-~vv~is~d-~~~~~   82 (159)
T 2a4v_A            8 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE---YA-AVFGLSAD-SVTSQ   82 (159)
T ss_dssp             CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT---TC-EEEEEESC-CHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHh---CC-cEEEEeCC-CHHHH
Confidence            46899999999 999999999999987  8999987 99999999999999999999986   56 99999998 45666


Q ss_pred             HhhhccCCceeeccCchhhHHHHHHcCcCcee------eEEEECCCCceEecc
Q 018726          215 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP------ALVLIGPDGKTISTN  261 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P------~~~lid~~G~v~~~~  261 (351)
                      .++.+.++ ..+|+..|....+++.||+...|      ++||| ++|+|+++.
T Consensus        83 ~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~  133 (159)
T 2a4v_A           83 KKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR  133 (159)
T ss_dssp             HHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence            67766555 35677777778999999999888      89999 999999883

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.83  E-value=5.6e-20  Score=157.95  Aligned_cols=118  Identities=13%  Similarity=0.057  Sum_probs=91.1

Q ss_pred             hhccCCCcEe-cCC-CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018726          140 LAIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  210 (351)
Q Consensus       140 ~g~~~pdf~~-~~~-g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  210 (351)
                      .+.++|+|++ +.+ |+.+++++++||++||+|||+||++|+.++|.|++++++|++   .+++|++|++|.       +
T Consensus        22 ~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~---~g~~vv~v~~d~~~~~e~d~   98 (208)
T 2f8a_A           22 SMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAK   98 (208)
T ss_dssp             CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSC
T ss_pred             hcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccC---CCeEEEEEECCcccccCCCC
Confidence            3567899999 999 999999999999999999999999999999999999999986   679999999872       3


Q ss_pred             HHHHHhhhc------cCCceeeccCch------h----hHHHHHHc-------------------------CcCceeeEE
Q 018726          211 HKEFDLNHS------IMPWLAIPYEDR------A----RQDLCRIF-------------------------NIKGIPALV  249 (351)
Q Consensus       211 ~~~~~~~~~------~~~~~~~~~~~d------~----~~~~~~~~-------------------------~i~~~P~~~  249 (351)
                      .++.+++++      .++ ..+|+..+      .    -..+...+                         ++...|++|
T Consensus        99 ~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tf  177 (208)
T 2f8a_A           99 NEEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKF  177 (208)
T ss_dssp             HHHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEE
T ss_pred             HHHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEE
Confidence            466676665      333 33443311      0    11111122                         256679999


Q ss_pred             EECCCCceEecc
Q 018726          250 LIGPDGKTISTN  261 (351)
Q Consensus       250 lid~~G~v~~~~  261 (351)
                      |||++|+|+.+.
T Consensus       178 lID~~G~i~~~~  189 (208)
T 2f8a_A          178 LVGPDGVPLRRY  189 (208)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EEcCCCcEEEEe
Confidence            999999999883

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.83  E-value=1.2e-20  Score=156.48  Aligned_cols=115  Identities=20%  Similarity=0.183  Sum_probs=98.4

Q ss_pred             HhhhccCCCcEe-cC--CCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          138 QLLAIEGRDYVL-SR--DHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~--~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      ..+|.++|+|++ +.  +|+.++++++ +||++||+||++||++|+.+.|.|++++++       ++.|++|++|.+.+.
T Consensus        22 ~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~v~~~~~~~~   94 (168)
T 2b1k_A           22 ALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------GIRVVGMNYKDDRQK   94 (168)
T ss_dssp             TTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCCEEEEEESCCHHH
T ss_pred             cccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------CCEEEEEECCCChHH
Confidence            357999999999 88  8999999885 899999999999999999999999888653       578999999988888


Q ss_pred             HHhhhccCCceeec-cCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          214 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++.+.++. .++ ...|....+++.|++.++|++++||++|+++++
T Consensus        95 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  141 (168)
T 2b1k_A           95 AISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR  141 (168)
T ss_dssp             HHHHHHHHCC-CCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHHHHHcCC-CCceeeECcchHHHHHcCccccCEEEEECCCCeEEEE
Confidence            8888876553 233 234556789999999999999999999999987

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.83  E-value=1.7e-20  Score=155.36  Aligned_cols=118  Identities=11%  Similarity=0.087  Sum_probs=91.2

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  210 (351)
                      .+|.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|.       +
T Consensus         6 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~   82 (169)
T 2v1m_A            6 KSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG---KGLRILAFPCNQFGGQEPWA   82 (169)
T ss_dssp             -CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSC
T ss_pred             cCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc---CCeEEEEEECCccCCCCCCC
Confidence            46889999999 999999999999999999999999999999999999999999986   679999999973       3


Q ss_pred             HHHHHhh-hccCCceeeccCc--hhhHH----HHH-----HcC-----cCceeeEEEECCCCceEec
Q 018726          211 HKEFDLN-HSIMPWLAIPYED--RARQD----LCR-----IFN-----IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~-~~~~~~~~~~~~~--d~~~~----~~~-----~~~-----i~~~P~~~lid~~G~v~~~  260 (351)
                      .+++.++ .+.++ ..+|...  |....    +.+     .++     +..+|+++|||++|+|+++
T Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  148 (169)
T 2v1m_A           83 EAEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR  148 (169)
T ss_dssp             HHHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence            4566666 34333 2233321  21111    111     125     4557999999999999988

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.83  E-value=2.2e-20  Score=172.23  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=106.4

Q ss_pred             HhhhccCCCcE-----e-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC---
Q 018726          138 QLLAIEGRDYV-----L-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD---  208 (351)
Q Consensus       138 ~~~g~~~pdf~-----~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d---  208 (351)
                      ..+|.++|+|+     + +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|   
T Consensus        51 l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~---~~v~vi~Vs~d~~~  127 (352)
T 2hyx_A           51 LESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---SGLAVIGVHTPEYA  127 (352)
T ss_dssp             CCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSG
T ss_pred             cCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc---CCeEEEEEECCccc
Confidence            35689999999     8 899999999999999999999999999999999999999999986   68999999986   


Q ss_pred             --CCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          209 --RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       209 --~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                        .+.+.++++.+.++ +.+|+..|....+.+.|++.++|+++|||++|+|+.+
T Consensus       128 ~~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~  180 (352)
T 2hyx_A          128 FEKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHI  180 (352)
T ss_dssp             GGGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred             ccCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence              35678888887666 4567777777899999999999999999999999987

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.72  E-value=4e-22  Score=160.53  Aligned_cols=121  Identities=39%  Similarity=0.746  Sum_probs=106.4

Q ss_pred             cCCCcEe-cCCCcceeecc-cCCc-EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          143 EGRDYVL-SRDHRKITVSE-LAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       143 ~~pdf~~-~~~g~~~~l~~-~~gk-~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      .+|+|++ +.+|+.+++++ ++|| +++|+||++||++|+.++|.|.++++++++ ...++.|++|++|.+.+.+.++.+
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~~v~~d~~~~~~~~~~~   81 (143)
T 2lus_A            3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD-DSAPFEIIFVSSDRSEDDMFQYMM   81 (143)
Confidence            4789999 99999999999 9999 999999999999999999999999999953 225899999999988788888887


Q ss_pred             cC--CceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccc
Q 018726          220 IM--PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKE  264 (351)
Q Consensus       220 ~~--~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~  264 (351)
                      .+  +|..+++..+....+++.|++.++|+++++|++|++++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~  128 (143)
T 2lus_A           82 ESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG  128 (143)
Confidence            65  4667777777778999999999999999999999999986643

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.82  E-value=1.8e-20  Score=155.26  Aligned_cols=116  Identities=12%  Similarity=0.027  Sum_probs=99.9

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||+++|+|| ++||++|..++|.|++++++      .++.|++|+.| +.+...+
T Consensus        21 ~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~------~~~~vv~is~d-~~~~~~~   93 (166)
T 3p7x_A           21 NEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK------EEGIVLTISAD-LPFAQKR   93 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT------TTSEEEEEESS-CHHHHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc------CCCEEEEEECC-CHHHHHH
Confidence            46999999999 9999999999999999999999 78999999999999888665      46899999998 4666777


Q ss_pred             hhccCCceeeccCchh-hHHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDRA-RQDLCRIFNIKG------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~-~~~~~~~~~i~~------~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++...+|+..|. ...+++.||+..      +|++||||++|+|++++
T Consensus        94 ~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  145 (166)
T 3p7x_A           94 WCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE  145 (166)
T ss_dssp             HHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred             HHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            7776554357777777 779999999985      89999999999999873

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.82  E-value=2.3e-20  Score=154.55  Aligned_cols=117  Identities=10%  Similarity=0.046  Sum_probs=100.9

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+|| ++||++|..++|.|++++++|     .+++|++|+.| +.+..++
T Consensus        18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~v~vv~Is~d-~~~~~~~   91 (165)
T 1q98_A           18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-----SNTIVLCISAD-LPFAQAR   91 (165)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-----TTEEEEEEESS-CHHHHTT
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCCEEEEEeCC-CHHHHHH
Confidence            46899999999 9999999999999999999999 899999999999999999988     46899999997 4566777


Q ss_pred             hhccCCceeeccCchh-hHHHHHHcCcCc---------eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDRA-RQDLCRIFNIKG---------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~-~~~~~~~~~i~~---------~P~~~lid~~G~v~~~~  261 (351)
                      +.+.+++..+|+..|. ...+++.|++..         .|++||||++|+|+++.
T Consensus        92 ~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A           92 FCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             CTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence            7776663256776675 688999999864         59999999999999884

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-20  Score=157.28  Aligned_cols=115  Identities=14%  Similarity=0.141  Sum_probs=85.3

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHH
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHK  212 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~  212 (351)
                      +..+|+|++ +.+|+++++++++||++||+||++||++|+ ++|.|++++++|++   .++.|++|++|       .+.+
T Consensus         9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~d~~~   84 (171)
T 3cmi_A            9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKD---EGFTIIGFPCNQFGHQEPGSDE   84 (171)
T ss_dssp             -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGG---GTEEEEEEEECSCC--------
T ss_pred             hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhcc---CCeEEEEEECcccCCCCCCCHH
Confidence            567899999 999999999999999999999999999999 99999999999986   67999999986       3445


Q ss_pred             HHHhhh-ccCCceeeccCchh--hH--------H-HHHHcCcCcee------eEEEECCCCceEec
Q 018726          213 EFDLNH-SIMPWLAIPYEDRA--RQ--------D-LCRIFNIKGIP------ALVLIGPDGKTIST  260 (351)
Q Consensus       213 ~~~~~~-~~~~~~~~~~~~d~--~~--------~-~~~~~~i~~~P------~~~lid~~G~v~~~  260 (351)
                      .+.++. +.++ ..+|...|.  ..        . ..+.|++.++|      +++|||++|+|+.+
T Consensus        85 ~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           85 EIAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             ----------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             HHHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence            666666 5444 334443321  11        1 12458999999      99999999999988

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.82  E-value=7.6e-20  Score=160.50  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=101.2

Q ss_pred             HhhhccCCCcEe-cC---CCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          138 QLLAIEGRDYVL-SR---DHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~---~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      ..+|.++|+|++ +.   +|+++++++++||++||+||+ +||++|..++|.|.+++++|++   .+++|++|++|. ..
T Consensus        48 l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~---~gv~vv~Is~D~-~~  123 (240)
T 3qpm_A           48 AKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA---INTEVVACSVDS-QF  123 (240)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT---TTEEEEEEESSC-HH
T ss_pred             CCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HH
Confidence            357999999997 43   356999999999999999999 9999999999999999999986   789999999985 33


Q ss_pred             HHHhhhccC------CceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ...++.+..      ..+.+|+..|....+++.||+.      .+|++||||++|+|+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~  184 (240)
T 3qpm_A          124 THLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT  184 (240)
T ss_dssp             HHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence            444444432      1366778888888999999997      689999999999999883

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.82  E-value=7.9e-20  Score=158.49  Aligned_cols=120  Identities=17%  Similarity=0.237  Sum_probs=102.8

Q ss_pred             HhhhccCCCcEe-c---CCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          138 QLLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       138 ~~~g~~~pdf~~-~---~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      ..+|.++|+|++ +   .+|+++++++++||++||+|| ++||++|+.+++.|.+++++|++   .+++|++|++|. ..
T Consensus        27 l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~---~~v~vv~Is~D~-~~  102 (220)
T 1zye_A           27 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSVDS-HF  102 (220)
T ss_dssp             CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEESSC-HH
T ss_pred             ccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HH
Confidence            357999999998 4   467999999999999999999 99999999999999999999986   789999999995 44


Q ss_pred             HHHhhhccC----C--ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ...++.+.+    +  ...+|+..|....+++.|++.      ++|++||||++|+|+++.
T Consensus       103 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~  163 (220)
T 1zye_A          103 SHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS  163 (220)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEE
Confidence            455555443    1  356777777778999999998      999999999999999883

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.82  E-value=2.8e-20  Score=158.15  Aligned_cols=119  Identities=13%  Similarity=0.276  Sum_probs=104.3

Q ss_pred             hhhccCCCcEe--cCCCcceeecccCCc-EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------
Q 018726          139 LLAIEGRDYVL--SRDHRKITVSELAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------  208 (351)
Q Consensus       139 ~~g~~~pdf~~--~~~g~~~~l~~~~gk-~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------  208 (351)
                      .+|.++|+|++  +.+|+.+++++++|| ++||+||++||++|+.++|.|.+++++|++   .++.|++|++|       
T Consensus        19 ~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~v~~d~~~~~~~   95 (196)
T 2ywi_A           19 PLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMP---KGVSFVAINSNDAEQYPE   95 (196)
T ss_dssp             CTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEECSCTTTCGG
T ss_pred             CcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCccccccc
Confidence            46899999998  589999999999998 599999999999999999999999999986   67999999997       


Q ss_pred             CCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          209 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      .+.+.+.++.+.++ ..+|+..|....+++.|++.++|+++|||++|+|++++
T Consensus        96 d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  147 (196)
T 2ywi_A           96 DSPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRG  147 (196)
T ss_dssp             GSHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred             cCHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence            35677777777665 35666667677899999999999999999999999873

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.82  E-value=3.7e-20  Score=156.24  Aligned_cols=118  Identities=11%  Similarity=0.046  Sum_probs=93.2

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  210 (351)
                      .+|.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .+++|++|++|.       +
T Consensus        24 ~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~is~d~~~~~~~~~  100 (185)
T 2gs3_A           24 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE---CGLRILAFPCNQFGKQEPGS  100 (185)
T ss_dssp             GGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCTTTTCCCSC
T ss_pred             cCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc---CCeEEEEEECcccCCCCCCC
Confidence            46889999999 999999999999999999999999999999999999999999986   679999999873       3


Q ss_pred             HHHHHhhhccCCceeeccCc--hhhH----HHHHHc-------Cc-----CceeeEEEECCCCceEec
Q 018726          211 HKEFDLNHSIMPWLAIPYED--RARQ----DLCRIF-------NI-----KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~--d~~~----~~~~~~-------~i-----~~~P~~~lid~~G~v~~~  260 (351)
                      .++++++.+.++ ..+|...  |...    .+.+.+       ++     ..+|++||||++|+|+++
T Consensus       101 ~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A          101 NEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             HHHHHHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence            566777776555 2344332  1111    122211       43     347999999999999988

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.82  E-value=1e-19  Score=155.44  Aligned_cols=123  Identities=18%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             HhhhccC--CCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---C
Q 018726          138 QLLAIEG--RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---D  210 (351)
Q Consensus       138 ~~~g~~~--pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~  210 (351)
                      ..+|.++  |+|++ +.+|+.+++++++||++||+||++||++ |+.++|.|.++++++.+....++.|++|++|.   +
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~   92 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDS   92 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCC
T ss_pred             hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCC
Confidence            4567775  99999 9999999999999999999999999998 99999999999999974213589999999995   5


Q ss_pred             HHHHHhhhccCC--ceeeccCchhhHHHHHHcCcC-cee---------------eEEEECCCCceEec
Q 018726          211 HKEFDLNHSIMP--WLAIPYEDRARQDLCRIFNIK-GIP---------------ALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~i~-~~P---------------~~~lid~~G~v~~~  260 (351)
                      .+.+.++.+.++  |..++...+....+++.||+. +.|               ++||||++|+|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~  160 (200)
T 2b7k_A           93 PAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  160 (200)
T ss_dssp             HHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence            677777777554  555666666778899999987 444               88999999999987

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.82  E-value=2.8e-20  Score=190.16  Aligned_cols=174  Identities=13%  Similarity=0.159  Sum_probs=124.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHH----HHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETL----HKK  113 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~----~~~  113 (351)
                      .+++++|.||+|||++|+.+.|.+.++++.+++.     +.++.+|++.. .+++.++...+|++.+  .+..    ...
T Consensus       562 ~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~-----v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~  636 (780)
T 3apo_A          562 HDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-----INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHS  636 (780)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-----SEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEE
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC-----eEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhh
Confidence            3678999999999999999999999999999864     45555555433 4666677777888877  3221    112


Q ss_pred             Hhh-hhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceee-cccCCcEEEEEEecCCChhhHHhHHHHHHHHHH
Q 018726          114 LRI-RKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE  191 (351)
Q Consensus       114 l~~-~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~  191 (351)
                      +.+ ....+.+.+++...             .|.....+++..+.. ..-.+++++|+||++||++|+.+.|.+.+++++
T Consensus       637 y~g~~~~~~~l~~fi~~~-------------~~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~  703 (780)
T 3apo_A          637 YNGWNRDAYSLRSWGLGF-------------LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARM  703 (780)
T ss_dssp             CCCSCCSHHHHHHHHHTT-------------SCCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHhhh-------------cccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            233 22334444443332             222222333444421 112478999999999999999999999999999


Q ss_pred             hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       192 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++    .++.++.|+++..                       ..++++|+|.++||++++ ++|+++.+
T Consensus       704 ~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~Pt~~~~-~~g~~~~~  744 (780)
T 3apo_A          704 IK----GKVRAGKVDCQAY-----------------------PQTCQKAGIKAYPSVKLY-QYERAKKS  744 (780)
T ss_dssp             HT----TTCEEEEEETTTC-----------------------HHHHHHTTCCSSSEEEEE-EEETTTTE
T ss_pred             hc----CCceEEEEECCCC-----------------------HHHHHhcCCCcCCEEEEE-cCCCcccc
Confidence            97    4688999988764                       578999999999999999 88887654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.82  E-value=1.4e-19  Score=150.60  Aligned_cols=141  Identities=19%  Similarity=0.222  Sum_probs=108.1

Q ss_pred             hhccCC-CcEe-cCCCcceeecccCCcEEEEEEecCCCh-hhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHH
Q 018726          140 LAIEGR-DYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEF  214 (351)
Q Consensus       140 ~g~~~p-df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~  214 (351)
                      +|.++| +|++ +.+|+++++++++||++||+||++||+ +|..+++.|+++++++++ .+.+++|++|++|.  +.+.+
T Consensus         3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~-~~~~~~vv~is~d~~d~~~~~   81 (170)
T 3me7_A            3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGT-PGKDFWVITFTFDPKDTLEDI   81 (170)
T ss_dssp             TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCC-BTTTBEEEEEECCTTCCHHHH
T ss_pred             CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhh-cCCceEEEEEECCCCCCHHHH
Confidence            689999 9999 999999999999999999999999998 599999999999999964 34679999999983  55677


Q ss_pred             HhhhccCC-----cee-eccCchhhHHHHHHcCc---------CceeeEEEECCCCceEeccccceeeccCCcCCCCchh
Q 018726          215 DLNHSIMP-----WLA-IPYEDRARQDLCRIFNI---------KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTES  279 (351)
Q Consensus       215 ~~~~~~~~-----~~~-~~~~~d~~~~~~~~~~i---------~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~  279 (351)
                      +++.+.++     |.. +....+....+++.||+         ...|++||||++|+|+..       .+|..  +    
T Consensus        82 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~-------~~g~~--~----  148 (170)
T 3me7_A           82 KRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY-------IYGVN--Y----  148 (170)
T ss_dssp             HHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE-------EESSS--C----
T ss_pred             HHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE-------EeCCC--C----
Confidence            77776554     221 11233456788888774         456899999999999976       34432  1    


Q ss_pred             hHHHHHHHHHHhcCc
Q 018726          280 RIAEIETALKKEGDA  294 (351)
Q Consensus       280 ~~~~l~~~~~~~~~~  294 (351)
                      ..+++.+.+++.+..
T Consensus       149 ~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          149 NYLEFVNALRLARGE  163 (170)
T ss_dssp             CHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhhcc
Confidence            145555556655443

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.82  E-value=2.6e-20  Score=153.78  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=102.7

Q ss_pred             hhhccCCCcEe---cCCC--cceeecc-cCCcEEEEEEe-cCCChhhH-HhHHHHHHHHHHhhcccCCceE-EEEEeCCC
Q 018726          139 LLAIEGRDYVL---SRDH--RKITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCFE-VVLVSTDR  209 (351)
Q Consensus       139 ~~g~~~pdf~~---~~~g--~~~~l~~-~~gk~vll~F~-a~~C~~C~-~~~~~l~~l~~~~~~~~~~~~~-vv~v~~d~  209 (351)
                      .+|.++|+|++   +.+|  +++++++ ++||++||+|| ++||++|. .++|.|++++++|++   .+++ |++|+.| 
T Consensus         5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~---~~v~~vv~Is~d-   80 (162)
T 1tp9_A            5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS---KGVTEILCISVN-   80 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCCEEEEESS-
T ss_pred             CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECC-
Confidence            36889999997   6789  9999999 89999999999 89999999 999999999999986   7899 9999998 


Q ss_pred             CHHHHHhhhccCCce-eeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          210 DHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      +.+..+++.+.++.. .+|+..|.+..+++.||+.           ..|+++||| +|+|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~  143 (162)
T 1tp9_A           81 DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN  143 (162)
T ss_dssp             CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence            456677777766643 5788888888999999986           279999999 99999883

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.82  E-value=4.2e-20  Score=157.81  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=102.6

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+|| ++||++|..++|.|++++++|     .+++|++|+.| +.+..++
T Consensus        53 ~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-----~~v~vv~Is~D-~~~~~~~  126 (200)
T 3zrd_A           53 QIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-----ENTVVLCISSD-LPFAQSR  126 (200)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-----TTEEEEEEESS-CHHHHTT
T ss_pred             CCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-----CCCEEEEEECC-CHHHHHH
Confidence            46999999999 9999999999999999999999 689999999999999999988     35999999998 5667777


Q ss_pred             hhccCCceeeccCchh-hHHHHHHcCcC---------ceeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDRA-RQDLCRIFNIK---------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~-~~~~~~~~~i~---------~~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++...+|+..|. ...+++.||+.         .+|++||||++|+|+++.
T Consensus       127 ~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          127 FCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             CTTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence            7777663377777787 78999999986         369999999999999884

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.82  E-value=5.1e-20  Score=153.93  Aligned_cols=116  Identities=18%  Similarity=0.148  Sum_probs=97.9

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+||++| |++|+.++|.|.+++++      .++.|++|++|. .+..++
T Consensus        19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~------~~v~vv~Is~D~-~~~~~~   91 (175)
T 1xvq_A           19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDL-PFAQKR   91 (175)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSC-HHHHTT
T ss_pred             CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh------cCCEEEEEECCC-HHHHHH
Confidence            46899999999 9999999999999999999999999 99999999999999887      358999999974 556677


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCce---------eeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~---------P~~~lid~~G~v~~~~  261 (351)
                      +.+..++..+++..|....+++.|++...         |+++|||++|+|+++.
T Consensus        92 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A           92 FCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             CC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             HHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence            77766644677777777889999999877         9999999999999883

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.82  E-value=1.9e-20  Score=152.91  Aligned_cols=117  Identities=15%  Similarity=0.239  Sum_probs=98.1

Q ss_pred             HHhhhccCCCcEe-cCCC--------cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          137 EQLLAIEGRDYVL-SRDH--------RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g--------~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      ...+|.++|+|.+ +.+|        +.+++++++||+++|+||++||++|+.+.|.|++++++      .++.+++|++
T Consensus         7 ~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~------~~v~~v~v~~   80 (156)
T 1kng_A            7 SALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD------KRFQLVGINY   80 (156)
T ss_dssp             -----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC------TTSEEEEEEE
T ss_pred             hHHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc------CCeEEEEEEC
Confidence            3467999999999 8888        99999999999999999999999999999999887653      4589999999


Q ss_pred             CCCHHHHHhhhccCCceeec-cCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          208 DRDHKEFDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       208 d~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +.+.+.+.++.+.+++ .++ +..|....+++.|++.++|+++++|++|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~  133 (156)
T 1kng_A           81 KDAADNARRFLGRYGN-PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYK  133 (156)
T ss_dssp             SCCHHHHHHHHHHHCC-CCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred             CCCHHHHHHHHHHcCC-CCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence            9888888888876652 344 445666789999999999999999999999987

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.82  E-value=3.3e-20  Score=157.18  Aligned_cols=117  Identities=18%  Similarity=0.231  Sum_probs=94.7

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  211 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  211 (351)
                      .+.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .+++|++|++|.       +.
T Consensus        24 ~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~~~~  100 (190)
T 2vup_A           24 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS---QGFTVLAFPCNQFGGQEPGNE  100 (190)
T ss_dssp             CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTCEEEEEECCCSTTCCCSCH
T ss_pred             CCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhc---CCeEEEEEEcCccCCCCCCCH
Confidence            4778999999 999999999999999999999999999999999999999999986   679999999983       56


Q ss_pred             HHHHhhh-ccCCceeeccCc--hhhHH----HH-----HHcCcCcee------eEEEECCCCceEec
Q 018726          212 KEFDLNH-SIMPWLAIPYED--RARQD----LC-----RIFNIKGIP------ALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~-~~~~~~~~~~~~--d~~~~----~~-----~~~~i~~~P------~~~lid~~G~v~~~  260 (351)
                      ++++++. +.++ ..+|...  |....    +.     +.|++.++|      ++||||++|+|+.+
T Consensus       101 ~~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  166 (190)
T 2vup_A          101 EEIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER  166 (190)
T ss_dssp             HHHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence            6777776 4433 2344332  21111    21     346899999      99999999999987

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.81  E-value=5.6e-20  Score=153.02  Aligned_cols=116  Identities=14%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|.++|+|++ +.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|     .+++|++|+.|. .+..++
T Consensus        22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-----~~v~vv~Is~d~-~~~~~~   95 (171)
T 2yzh_A           22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-----EGVDVTVVSMDL-PFAQKR   95 (171)
T ss_dssp             CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSC-HHHHHH
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-----CCceEEEEeCCC-HHHHHH
Confidence            46899999999 9999999999999999999999 899999999999999998877     469999999984 556666


Q ss_pred             hhccCCceeeccCch-hhHHHHHHcCcCc---------eeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPYEDR-ARQDLCRIFNIKG---------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d-~~~~~~~~~~i~~---------~P~~~lid~~G~v~~~~  261 (351)
                      +.+.++...+|+..| ....+ +.|++..         +|+++|||++|+|+++.
T Consensus        96 ~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  149 (171)
T 2yzh_A           96 FCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ  149 (171)
T ss_dssp             HHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence            776665325677666 66778 9999852         69999999999999883

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.81  E-value=7.5e-20  Score=151.65  Aligned_cols=117  Identities=13%  Similarity=0.093  Sum_probs=101.2

Q ss_pred             hhccCCCcEe--cCCCcceeeccc-CCcEEEEEEe-cCCChhhHH-hHHHHHHHHHHhhcccCCce-EEEEEeCCCCHHH
Q 018726          140 LAIEGRDYVL--SRDHRKITVSEL-AGKTIGLYFG-AHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVSTDRDHKE  213 (351)
Q Consensus       140 ~g~~~pdf~~--~~~g~~~~l~~~-~gk~vll~F~-a~~C~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~~~  213 (351)
                      +|.++|+|++  +.+|++++++++ +||++||+|| ++|||+|+. ++|.|++++++|++   .++ +|++|+.| +...
T Consensus         5 ~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~d-~~~~   80 (167)
T 2wfc_A            5 EGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG---KGVDIIACMAVN-DSFV   80 (167)
T ss_dssp             TTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH---TTCCEEEEEESS-CHHH
T ss_pred             CCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEeCC-CHHH
Confidence            6889999998  688999999998 9999888885 999999999 99999999999987   789 99999998 4566


Q ss_pred             HHhhhccCCce-eeccCchhhHHHHHHcCcCce-----------eeEEEECCCCceEecc
Q 018726          214 FDLNHSIMPWL-AIPYEDRARQDLCRIFNIKGI-----------PALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~~~-----------P~~~lid~~G~v~~~~  261 (351)
                      .+++.+..+.. .+|+..|.+..+++.||+...           |++||| ++|+|+++.
T Consensus        81 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~  139 (167)
T 2wfc_A           81 MDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVN  139 (167)
T ss_dssp             HHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEE
Confidence            67777766532 278888888899999998754           999999 999999883

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.81  E-value=2.6e-20  Score=156.68  Aligned_cols=137  Identities=12%  Similarity=0.129  Sum_probs=107.1

Q ss_pred             HhhhccCCCcEe-cC--CC-cceeecc-cCCcE-EEEEEecCCChhhHH-hHHHHHHHHHHhhcccCCceE-EEEEeCCC
Q 018726          138 QLLAIEGRDYVL-SR--DH-RKITVSE-LAGKT-IGLYFGAHWCPPCRS-FTSQLIEVYNELKTTANHCFE-VVLVSTDR  209 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~--~g-~~~~l~~-~~gk~-vll~F~a~~C~~C~~-~~~~l~~l~~~~~~~~~~~~~-vv~v~~d~  209 (351)
                      ..+|.++|+|++ +.  +| +++++++ ++||+ +|++||++|||+|+. ++|.|++++++|++   .++. |++|+.|.
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~d~  102 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILA---RGVDDIAVVAVND  102 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSC
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHH---cCCCEEEEEECCC
Confidence            457999999999 77  88 9999999 89985 555667999999999 79999999999986   7888 99999984


Q ss_pred             CHHHHHhhhccCCce-eeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEeccccceeeccCCcCCCCc
Q 018726          210 DHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT  277 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~  277 (351)
                       ....+++.+..+.. .+|+..|.+..+++.||+.           ..|++|||| +|+|++..       .+...-+..
T Consensus       103 -~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~-------~~~~~g~~~  173 (184)
T 3uma_A          103 -LHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALN-------IEESPGQAT  173 (184)
T ss_dssp             -HHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEE-------ECSSTTCCS
T ss_pred             -HHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEE-------EeCCCCCCc
Confidence             55666666655533 4888888889999999985           357899996 99999984       443332334


Q ss_pred             hhhHHHHHH
Q 018726          278 ESRIAEIET  286 (351)
Q Consensus       278 ~~~~~~l~~  286 (351)
                      ....+++.+
T Consensus       174 ~~~~~~vL~  182 (184)
T 3uma_A          174 ASGAAAMLE  182 (184)
T ss_dssp             TTSHHHHHH
T ss_pred             CCCHHHHHh
Confidence            444555433

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.81  E-value=5.1e-20  Score=155.03  Aligned_cols=118  Identities=12%  Similarity=0.084  Sum_probs=95.0

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  210 (351)
                      .+|.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|.       +
T Consensus        22 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~e~~~   98 (183)
T 2obi_A           22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE---CGLRILAFPCNQFGKQEPGS   98 (183)
T ss_dssp             GGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSC
T ss_pred             cccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc---CCeEEEEEECCCCCCCCCCC
Confidence            56899999999 999999999999999999999999999999999999999999986   679999999873       5


Q ss_pred             HHHHHhhhccCCceeeccCc--hhhH----HHHHHc-------C-----cCceeeEEEECCCCceEec
Q 018726          211 HKEFDLNHSIMPWLAIPYED--RARQ----DLCRIF-------N-----IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~--d~~~----~~~~~~-------~-----i~~~P~~~lid~~G~v~~~  260 (351)
                      .++++++.+.++ ..+|...  |...    .+.+.+       +     +..+|+++|||++|+|+++
T Consensus        99 ~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A           99 NEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             HHHHHHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence            677777777665 2344432  2211    122221       4     4456999999999999987

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.81  E-value=6.1e-20  Score=152.85  Aligned_cols=121  Identities=14%  Similarity=0.104  Sum_probs=100.9

Q ss_pred             hHHhhhccCCCcEe--cCCCcceeecc-cCCcEEEEE-EecCCChhhH-HhHHHHHHHHHHhhcccCCceEEEE-EeCCC
Q 018726          136 LEQLLAIEGRDYVL--SRDHRKITVSE-LAGKTIGLY-FGAHWCPPCR-SFTSQLIEVYNELKTTANHCFEVVL-VSTDR  209 (351)
Q Consensus       136 ~~~~~g~~~pdf~~--~~~g~~~~l~~-~~gk~vll~-F~a~~C~~C~-~~~~~l~~l~~~~~~~~~~~~~vv~-v~~d~  209 (351)
                      .+..+|.++|+|++  +.+|+++++++ ++||+++|+ ||++|||+|. .++|.|++++++|++   .+++||+ |+.| 
T Consensus        13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~---~gv~vv~~iS~D-   88 (173)
T 3mng_A           13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSVN-   88 (173)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESS-
T ss_pred             CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcCC-
Confidence            34567999999999  58999999999 599966554 5699999999 599999999999986   7899997 9988 


Q ss_pred             CHHHHHhhhccCCce-eeccCchhhHHHHHHcCcC-------------ceeeEEEECCCCceEecc
Q 018726          210 DHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-------------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~-------------~~P~~~lid~~G~v~~~~  261 (351)
                      +....+++.+..+.. .+|+..|.+..+++.||+.             ..|++|||| +|+|++..
T Consensus        89 ~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~  153 (173)
T 3mng_A           89 DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN  153 (173)
T ss_dssp             CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             CHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence            455666777666643 4788888889999999985             359999999 99999884

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.81  E-value=9.3e-20  Score=186.34  Aligned_cols=170  Identities=14%  Similarity=0.220  Sum_probs=120.6

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..|++++|.|||+||++|+.++|.+.+++++++++   +.++.|+++... .+++.++...+|++.+  +|.. .++.+.
T Consensus       453 ~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~-~~~~g~  527 (780)
T 3apo_A          453 SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIHE-GLCNMYNIQAYPTTVVFNQSSI-HEYEGH  527 (780)
T ss_dssp             TCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEE-EEECSC
T ss_pred             cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCCCCH-HHHHHcCCCcCCeEEEEcCCce-eeecCc
Confidence            38999999999999999999999999999999754   566666655433 4667777777888776  4332 334443


Q ss_pred             hhhhHHhhhccccccccchHHhhhccCCCcEecCCCccee---ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhc
Q 018726          118 KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT---VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT  194 (351)
Q Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~---l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~  194 (351)
                      ...+++..++.....            |... .++++.+.   ...-.++.++|.|+++||++|+...|.+.++++.++ 
T Consensus       528 ~~~~~l~~fi~~~~~------------~~v~-~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~-  593 (780)
T 3apo_A          528 HSAEQILEFIEDLRN------------PSVV-SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT-  593 (780)
T ss_dssp             SCHHHHHHHHHHHHS------------CSEE-ECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             ccHHHHHHHHHhhcc------------ccee-ecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh-
Confidence            334444444433221            2111 22222221   111135689999999999999999999999999997 


Q ss_pred             ccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCC
Q 018726          195 TANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD  254 (351)
Q Consensus       195 ~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~  254 (351)
                         +.+.++.|+.+..                       ..+++.|+|.++|+++++.+.
T Consensus       594 ---~~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pti~~~~~~  627 (780)
T 3apo_A          594 ---GLINVGSVDCGQY-----------------------HSFCTQENVQRYPEIRFYPQK  627 (780)
T ss_dssp             ---TTSEEEEEETTTT-----------------------HHHHHHTTCCSSSEEEEECCC
T ss_pred             ---CCeEEEEEECcch-----------------------HHHHHHcCCCCCCeEEEEcCC
Confidence               4677887777643                       678899999999999999553

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.80  E-value=1.3e-19  Score=175.33  Aligned_cols=95  Identities=17%  Similarity=0.404  Sum_probs=70.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+|||+||++|+.+.|.+.++++.+++  ..++.++.|+.+.                        ..+++.|+
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~v~~~~id~~~------------------------~~~~~~~~  422 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK--DPNIVIAKMDATA------------------------NDVPSPYE  422 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTT--CSSEEEEEEETTS------------------------SCCCTTCC
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhcc--CCCEEEEEEECCc------------------------hhhHhhCC
Confidence            378999999999999999999999999999974  2367787777664                        24667899


Q ss_pred             cCceeeEEEECCCCce-EeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCcCC
Q 018726          242 IKGIPALVLIGPDGKT-ISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  296 (351)
Q Consensus       242 i~~~P~~~lid~~G~v-~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p  296 (351)
                      |.++||+++++++|++ +.+       ..|..       ..+++.+.+++.+...+
T Consensus       423 v~~~Pt~~~~~~~~~~~~~~-------~~G~~-------~~~~l~~~l~~~~~~~~  464 (481)
T 3f8u_A          423 VRGFPTIYFSPANKKLNPKK-------YEGGR-------ELSDFISYLQREATNPP  464 (481)
T ss_dssp             CCSSSEEEEECTTCTTSCEE-------CCSCC-------SHHHHHHHHHHHCSSCC
T ss_pred             CcccCEEEEEeCCCeEeeeE-------eCCCC-------CHHHHHHHHHHhcCCcc
Confidence            9999999999777763 222       23432       25566666666655433

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.80  E-value=1.9e-19  Score=159.01  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             HhhhccCCCcEe-c---CCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          138 QLLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       138 ~~~g~~~pdf~~-~---~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      ..+|.++|+|++ +   .+|+++++++++||++||+|| ++||++|..++|.|.+++++|++   .+++|++|++|. ..
T Consensus        62 l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~---~gv~vv~IS~D~-~~  137 (254)
T 3tjj_A           62 AKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSVDS-QF  137 (254)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT---TTEEEEEEESSC-HH
T ss_pred             cCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEcCCC-HH
Confidence            347999999997 3   357899999999999999999 99999999999999999999986   789999999985 33


Q ss_pred             HHHhhhccC------CceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      ...++.+..      ..+.+|+..|....+++.||+.      .+|++||||++|+|+++.
T Consensus       138 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~  198 (254)
T 3tjj_A          138 THLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  198 (254)
T ss_dssp             HHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEE
Confidence            444444432      1366788888888999999985      589999999999999883

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.80  E-value=2.6e-19  Score=156.06  Aligned_cols=118  Identities=15%  Similarity=0.159  Sum_probs=100.1

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCc-EEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      .+|.++|+|++ +.+| ++++++++|| ++||+|| ++||++|..+++.|.+++++|++   .+++||+|++|.. ....
T Consensus         4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~---~~v~vigIS~D~~-~~~~   78 (233)
T 2v2g_A            4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK---RGVKLIALSCDNV-ADHK   78 (233)
T ss_dssp             CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCH-HHHH
T ss_pred             CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---cCCEEEEEcCCCH-HHHH
Confidence            46899999999 8889 9999999998 9999998 99999999999999999999987   7899999999963 3333


Q ss_pred             hhhc------cCC-ceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEecc
Q 018726          216 LNHS------IMP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~------~~~-~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~~  261 (351)
                      ++.+      ..+ .+.+|+..|....+++.||+.            .+|++||||++|+|++..
T Consensus        79 ~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  143 (233)
T 2v2g_A           79 EWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI  143 (233)
T ss_dssp             HHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence            3333      331 356788888888999999985            589999999999999883

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.80  E-value=7e-20  Score=161.11  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             hhhccCCCcEe-cC-CCc--ceeecc-cCCcEEEEEEe-cCCChhhH-HhHHHHHHHHHHhhcccCCce-EEEEEeCCCC
Q 018726          139 LLAIEGRDYVL-SR-DHR--KITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCF-EVVLVSTDRD  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~-~g~--~~~l~~-~~gk~vll~F~-a~~C~~C~-~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~  210 (351)
                      .+|.++|+|++ +. +|+  ++++++ ++||++||+|| ++||++|+ .++|.|++++++|++   .++ +|++|+.|. 
T Consensus         4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~---~~~~~vv~is~d~-   79 (241)
T 1nm3_A            4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK---YGVDDILVVSVND-   79 (241)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH---TTCCEEEEEESSC-
T ss_pred             cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEEcCC-
Confidence            36899999999 75 677  899999 89999999998 99999999 999999999999987   789 999999984 


Q ss_pred             HHHHHhhhccCCceeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          211 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      ....+++.+..+...+|+..|.+..+++.||+.           ..|+++|| ++|+|++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~  140 (241)
T 1nm3_A           80 TFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMF  140 (241)
T ss_dssp             HHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEE
Confidence            566677777666444788888888999999986           45899999 999999883

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.4e-19  Score=152.79  Aligned_cols=115  Identities=19%  Similarity=0.176  Sum_probs=88.3

Q ss_pred             hccCCCcEe-cCC-CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726          141 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  211 (351)
Q Consensus       141 g~~~pdf~~-~~~-g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  211 (351)
                      +..+|+|++ +.+ |+.+++++++||++||+|||+||++|+ ++|.|++++++|++   .+++|++|++|.       +.
T Consensus        32 ~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~---~g~~Vlgvs~d~f~~~e~~~~  107 (215)
T 2i3y_A           32 KGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKP---YGLVVLGFPCNQFGKQEPGDN  107 (215)
T ss_dssp             CCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSCH
T ss_pred             cCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhcc---CCeEEEEEEccccCcCCCCCH
Confidence            457899999 999 999999999999999999999999999 99999999999986   789999999762       34


Q ss_pred             HHHHhhhc------cCCceeeccCchh--h--------HHHHHH-------cC--------------cCceeeEEEECCC
Q 018726          212 KEFDLNHS------IMPWLAIPYEDRA--R--------QDLCRI-------FN--------------IKGIPALVLIGPD  254 (351)
Q Consensus       212 ~~~~~~~~------~~~~~~~~~~~d~--~--------~~~~~~-------~~--------------i~~~P~~~lid~~  254 (351)
                      ++.+++.+      .++ +.+|+..+.  +        ..+...       ++              |...|++||||++
T Consensus       108 ~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~  186 (215)
T 2i3y_A          108 KEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD  186 (215)
T ss_dssp             HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred             HHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCC
Confidence            66777776      444 345543211  0        112111       11              2233899999999


Q ss_pred             CceEec
Q 018726          255 GKTIST  260 (351)
Q Consensus       255 G~v~~~  260 (351)
                      |+|+.+
T Consensus       187 G~vv~~  192 (215)
T 2i3y_A          187 GIPVMR  192 (215)
T ss_dssp             SCEEEE
T ss_pred             CeEEEE
Confidence            999988

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.80  E-value=4.6e-19  Score=172.41  Aligned_cols=66  Identities=17%  Similarity=0.363  Sum_probs=52.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DET  109 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~  109 (351)
                      ++++++|.|||+||++|+.+.|.+.++++.+++.+  +.++.|+++.+. .+++.+++..+|++.+  +|.
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~   97 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTENQ-DLCMEHNIPGFPSLKIFKNSD   97 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTC
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECCCCH-HHHHhcCCCcCCEEEEEeCCc
Confidence            68999999999999999999999999999998753  455555555443 4677777777888876  554

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.80  E-value=6.8e-20  Score=152.57  Aligned_cols=119  Identities=12%  Similarity=0.118  Sum_probs=98.5

Q ss_pred             HhhhccCCCcEe-cC----CC-----cceeeccc-CCc-EEEEEEecCCChhhHHh-HHHHHHHHHHhhcccCCceE-EE
Q 018726          138 QLLAIEGRDYVL-SR----DH-----RKITVSEL-AGK-TIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFE-VV  203 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~----~g-----~~~~l~~~-~gk-~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~~~~~-vv  203 (351)
                      ..+|.++|+|++ +.    +|     ++++++++ +|| ++|++||++|||+|+.+ +|.|++++++|++   .++. |+
T Consensus         7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~---~g~~~vv   83 (171)
T 2pwj_A            7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKA---KGVDSVI   83 (171)
T ss_dssp             ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHH---TTCSEEE
T ss_pred             ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEE
Confidence            456789999999 66    47     89999996 996 67778999999999999 9999999999987   7888 99


Q ss_pred             EEeCCCCHHHHHhhhccCCc-eeeccCchhhHHHHHHcCcCc-----------eeeEEEECCCCceEecc
Q 018726          204 LVSTDRDHKEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIKG-----------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       204 ~v~~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~-----------~P~~~lid~~G~v~~~~  261 (351)
                      +|+.|. ....+++.+.++. ..+|+..|.+..+++.||+..           .|++++|| +|+|++.+
T Consensus        84 ~Is~d~-~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~  151 (171)
T 2pwj_A           84 CVAIND-PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALN  151 (171)
T ss_dssp             EEESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             EEeCCC-HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEE
Confidence            999984 5567777777665 367888888889999999853           46888888 99999883

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.79  E-value=9.1e-19  Score=145.61  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=93.1

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCCh-hhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHK  212 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~  212 (351)
                      ..+|.++|+|++ +.+|+++++++++||++||+||++||+ +|..+++.|.++++.+++ .+.++.+|+|++|.   +.+
T Consensus         6 ~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~-~~~~v~~v~isvDp~~Dtp~   84 (170)
T 4hde_A            6 KPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE-EKLDVQFVSFSVDPDLDKPE   84 (170)
T ss_dssp             SCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCHH
T ss_pred             cCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc-ccccceeEeeecCcccccHH
Confidence            346889999999 999999999999999999999999997 699999999999999976 45679999999984   346


Q ss_pred             HHHhhhccCC-----ceeeccCch--hhHHHHHHcC----------cCceeeEEEECCCCceEec
Q 018726          213 EFDLNHSIMP-----WLAIPYEDR--ARQDLCRIFN----------IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       213 ~~~~~~~~~~-----~~~~~~~~d--~~~~~~~~~~----------i~~~P~~~lid~~G~v~~~  260 (351)
                      .++++.+.++     |..+.....  ........|+          +...|++||||++|+|+..
T Consensus        85 ~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~  149 (170)
T 4hde_A           85 NLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK  149 (170)
T ss_dssp             HHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred             HHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence            6666666443     433332221  1122223333          3346899999999999876

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.79  E-value=1.1e-19  Score=150.98  Aligned_cols=121  Identities=19%  Similarity=0.334  Sum_probs=96.8

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHK  212 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~  212 (351)
                      .+.|.++|+|++ +.+| .+++++++||++||+||++||++ |+.++|.|.++++++++....++.|++|++|.   +.+
T Consensus        10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~   88 (172)
T 2k6v_A           10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE   88 (172)
T ss_dssp             EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred             cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence            346888999999 9999 99999999999999999999998 99999999999999874100279999999984   346


Q ss_pred             HHHhhhccCCceeeccCchhh---HHHHHHcCc---------------CceeeEEEECCCCceEecc
Q 018726          213 EFDLNHSIMPWLAIPYEDRAR---QDLCRIFNI---------------KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~i---------------~~~P~~~lid~~G~v~~~~  261 (351)
                      .++++.+.++ ..+++..|..   ..+++.|++               .++|+++||| +|+|+.+.
T Consensus        89 ~~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~  153 (172)
T 2k6v_A           89 VADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY  153 (172)
T ss_dssp             HHHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred             HHHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence            6777776554 2344444433   578777764               5789999999 99999873

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.79  E-value=7.5e-19  Score=150.62  Aligned_cols=115  Identities=17%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             hccCCCcEe-cCC-CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018726          141 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  211 (351)
Q Consensus       141 g~~~pdf~~-~~~-g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  211 (351)
                      ...+|+|++ +.+ |+.+++++++||++||+|||+||++| .++|.|++++++|++   .+++||+|++|.       +.
T Consensus        14 ~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~---~g~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           14 SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAP---FGLVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             -CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGG---GTEEEEEEECCCBTTCCCSCH
T ss_pred             cCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhcc---CCEEEEEEECcccCcCCCCCH
Confidence            457899999 999 99999999999999999999999999 799999999999986   689999999762       34


Q ss_pred             HHHHhhhc------cCCceeeccCchh--h--------HHHHHHc-------C--------------cCceeeEEEECCC
Q 018726          212 KEFDLNHS------IMPWLAIPYEDRA--R--------QDLCRIF-------N--------------IKGIPALVLIGPD  254 (351)
Q Consensus       212 ~~~~~~~~------~~~~~~~~~~~d~--~--------~~~~~~~-------~--------------i~~~P~~~lid~~  254 (351)
                      ++.+++.+      .++ +.+|+..+.  +        ..+....       +              |...|++||||++
T Consensus        90 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~  168 (207)
T 2r37_A           90 SEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPD  168 (207)
T ss_dssp             HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTT
T ss_pred             HHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCC
Confidence            66777776      544 344443211  0        1122211       1              2233899999999


Q ss_pred             CceEec
Q 018726          255 GKTIST  260 (351)
Q Consensus       255 G~v~~~  260 (351)
                      |+|+.+
T Consensus       169 G~i~~~  174 (207)
T 2r37_A          169 GIPIMR  174 (207)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            999988

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.78  E-value=9.4e-19  Score=151.94  Aligned_cols=119  Identities=15%  Similarity=0.241  Sum_probs=97.6

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCc--EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  213 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk--~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  213 (351)
                      .+|.++|+|++ +.+| ++++++++||  ++|++||++||++|..+++.|++++++|++   .+++||+|++|...  .+
T Consensus         6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~IS~D~~~~~~~   81 (224)
T 1prx_A            6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSIDSVEDHLA   81 (224)
T ss_dssp             CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred             CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---CCCEEEEEcCCCHHHHHH
Confidence            47899999999 8888 9999999998  566677999999999999999999999986   78999999999632  23


Q ss_pred             HHhhhccC------CceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~------~~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~~  261 (351)
                      |.+.++..      ..+.+|+..|....+++.||+.            .+|++||||++|+|++..
T Consensus        82 ~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  147 (224)
T 1prx_A           82 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI  147 (224)
T ss_dssp             HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEE
Confidence            33332211      2356777788888999999984            479999999999999883

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.78  E-value=8.8e-19  Score=151.68  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             hhhccCCCcEe-cC--CCcceeecccCCc--EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          139 LLAIEGRDYVL-SR--DHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       139 ~~g~~~pdf~~-~~--~g~~~~l~~~~gk--~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      .+|.++|+|++ +.  +| ++++++++||  ++|++||++||++|..+++.|++++++|++   .+++|++|++|...  
T Consensus         4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~vS~D~~~~~   79 (220)
T 1xcc_A            4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSCNSKESH   79 (220)
T ss_dssp             CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHHH
Confidence            46899999999 77  88 9999999998  455556999999999999999999999986   78999999999632  


Q ss_pred             HHHHhhhcc---CCceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~~  261 (351)
                      .+|.+.++.   ...+.+|+..|.+..+++.||+.            .+|++||||++|+|++..
T Consensus        80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~  144 (220)
T 1xcc_A           80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV  144 (220)
T ss_dssp             HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence            233332221   12356788888888999999983            479999999999999883

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.77  E-value=7e-19  Score=151.19  Aligned_cols=115  Identities=7%  Similarity=0.050  Sum_probs=97.6

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCC-ChhhH-----HhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCR-----SFTSQLIEVYNELKTTANHCFEVVLVSTDRD  210 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~-C~~C~-----~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  210 (351)
                      ..+|.++|+|++ +.+|+.+++++++||++||+||++| ||+|.     .+++.|.++   |     .++.|++||.| +
T Consensus        22 l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-----~gv~VvgIS~D-s   92 (224)
T 3keb_A           22 PRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-----PHLKLIVITVD-S   92 (224)
T ss_dssp             CCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-----TTSEEEEEESS-C
T ss_pred             CCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-----CCCEEEEEECC-C
Confidence            347999999999 9999999999999999999999998 99999     888887776   3     45899999998 4


Q ss_pred             HHHHHhhhccCCceeeccCchh-hHHHHHHcCcCc---------eeeEEEECCCCceEecc
Q 018726          211 HKEFDLNHSIMPWLAIPYEDRA-RQDLCRIFNIKG---------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~i~~---------~P~~~lid~~G~v~~~~  261 (351)
                      .....++.+.++...+|+..|. +..+++.||+..         .|++||||++|+|+++.
T Consensus        93 ~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~  153 (224)
T 3keb_A           93 PSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSE  153 (224)
T ss_dssp             HHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEE
T ss_pred             HHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEE
Confidence            5666667666554367888887 589999999864         79999999999999884

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.77  E-value=1.3e-18  Score=152.65  Aligned_cols=119  Identities=11%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             hhhccCCCcEe-cCCCcceee-ccc--CCcEE-EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          139 LLAIEGRDYVL-SRDHRKITV-SEL--AGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l-~~~--~gk~v-ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      .+|.++|+|++ +.+| ++++ +++  +||++ |++||++||++|..+++.|.+++++|++   .+++|++|++|...  
T Consensus         6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~---~gv~VI~VS~Ds~~~~   81 (249)
T 3a2v_A            6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSVDSVFSH   81 (249)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh---CCcEEEEEECCCHHHH
Confidence            57999999999 7888 7999 999  99964 5678999999999999999999999987   78999999998643  


Q ss_pred             HHHHhhhcc-C-CceeeccCchhhHHHHHHcCcC-------ceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSI-M-PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~-~-~~~~~~~~~d~~~~~~~~~~i~-------~~P~~~lid~~G~v~~~~  261 (351)
                      .+|.+.... . .-+.+|+..|....+++.||+.       ++|++||||++|+|++..
T Consensus        82 ~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~  140 (249)
T 3a2v_A           82 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML  140 (249)
T ss_dssp             HHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEE
Confidence            344443321 1 1356778888888999999997       899999999999999873

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.76  E-value=2.4e-19  Score=130.74  Aligned_cols=79  Identities=39%  Similarity=0.812  Sum_probs=74.2

Q ss_pred             CCcCCCCchhhHHHHHHHHHHhcCcCCCccccCCCc-ceeeeecCCceeeccccCCCceEEEEcCCCCCCCCccccCccc
Q 018726          270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN  348 (351)
Q Consensus       270 g~~~~p~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~-~~l~l~~~~~~~Cd~C~~~~~~~~~~c~~~~~~~~~~c~~~~~  348 (351)
                      |+++|||+++++.+|.+.+.+..+.+|..+.+..|+ |+|.+.....|+||.|++.+.||.|+|..|+|+||+.||+.+.
T Consensus         1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~   80 (89)
T 1v5n_A            1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED   80 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred             CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence            678999999999999999999999999999999995 9999997779999999999999999999999999999998543

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.76  E-value=4.5e-18  Score=145.06  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             HHhhhccCCCcEe----cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018726          137 EQLLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-  210 (351)
Q Consensus       137 ~~~~g~~~pdf~~----~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-  210 (351)
                      ...+|.+||||++    +.++++++|++++||++||+|| +.||+.|..+++.|.+.+++|++   .+++|++||+|.. 
T Consensus        22 ~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~---~g~~vigiS~Ds~~   98 (216)
T 3sbc_A           22 VAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE---QGAQVLFASTDSEY   98 (216)
T ss_dssp             CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSCHH
T ss_pred             hhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc---CCceEEEeecCchh
Confidence            3468999999986    4556899999999999999999 89999999999999999999997   8999999999963 


Q ss_pred             -HHHHHhhhcc---CCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          211 -HKEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 -~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                       ..+|....+.   ..-+.+|...|.+..+++.||+.      ..+.+||||++|+|++.
T Consensus        99 sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~  158 (216)
T 3sbc_A           99 SLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHI  158 (216)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEE
Confidence             3455544432   22367888999999999999983      46899999999999876

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.72  E-value=2.8e-17  Score=140.46  Aligned_cols=120  Identities=18%  Similarity=0.298  Sum_probs=100.7

Q ss_pred             HhhhccCCCcE----e-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726          138 QLLAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  211 (351)
Q Consensus       138 ~~~g~~~pdf~----~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  211 (351)
                      ..+|++||||+    + +.+|++++|++++||++||+|| +.||+.|..++..|.+++++|++   .+++|++||+|...
T Consensus        26 ~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~---~g~~vigiS~Ds~~  102 (219)
T 3tue_A           26 AKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNE---LNCEVLACSIDSEY  102 (219)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHT---TTEEEEEEESSCHH
T ss_pred             cccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhcc---CCcEEEEeeCCchh
Confidence            35899999998    4 6778899999999999999999 78999999999999999999987   89999999999633


Q ss_pred             --HHHHhhhc-c--CCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          212 --KEFDLNHS-I--MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 --~~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                        .+|..... .  ...+.+|...|++..+++.||+.      ....+||||++|+|++.
T Consensus       103 sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~  162 (219)
T 3tue_A          103 AHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQI  162 (219)
T ss_dssp             HHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEE
Confidence              44543322 1  22366788899999999999983      34689999999999876

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.67  E-value=4.3e-16  Score=122.52  Aligned_cols=91  Identities=16%  Similarity=0.284  Sum_probs=73.5

Q ss_pred             CCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCc
Q 018726          145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW  223 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~  223 (351)
                      ++++. +.+|........+||+++|+||++||++|+.+.|.|.+++++++    .++.++.|+++.+.            
T Consensus         7 ~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~d~------------   70 (126)
T 2l57_A            7 KQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE----GKFNIYYARLEEEK------------   70 (126)
T ss_dssp             SCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS----SSCEEEEEETTSSH------------
T ss_pred             CCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc----CCeEEEEEeCCCCc------------
Confidence            34443 44444444556678999999999999999999999999999886    57899999944221            


Q ss_pred             eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                               ...++++|++.++|+++++|++|+++.+
T Consensus        71 ---------~~~~~~~~~v~~~Pt~~~~~~~G~~~~~   98 (126)
T 2l57_A           71 ---------NIDLAYKYDANIVPTTVFLDKEGNKFYV   98 (126)
T ss_dssp             ---------HHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             ---------hHHHHHHcCCcceeEEEEECCCCCEEEE
Confidence                     4689999999999999999999999876

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.67  E-value=2.6e-16  Score=143.65  Aligned_cols=110  Identities=16%  Similarity=0.114  Sum_probs=92.0

Q ss_pred             ccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          142 IEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       142 ~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      .++|+|++ +.+|++++|++++||+|||+|| +.|||.|..+++.|.+    .   ...+++|++||.| +....+++.+
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~---~~~~~~v~gis~D-~~~~~~~f~~   73 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----E---NFEKAQVVGISRD-SVEALKRFKE   73 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----S---CCTTEEEEEEESC-CHHHHHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----H---hhCCCEEEEEeCC-CHHHHHHHHH
Confidence            46899999 9999999999999999999999 5689999999887743    1   2267999999998 4555566666


Q ss_pred             cCCceeeccCchhhHHHHHHcCcC----ceeeEEEECCCCceEec
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIK----GIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~----~~P~~~lid~~G~v~~~  260 (351)
                      .++ +.+|...|++..+++.||+.    .+|++||||++|+|++.
T Consensus        74 ~~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~  117 (322)
T 4eo3_A           74 KND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKE  117 (322)
T ss_dssp             HHT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEE
T ss_pred             hhC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEE
Confidence            555 57888889899999999993    58999999999999876

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.66  E-value=1.4e-16  Score=126.86  Aligned_cols=96  Identities=18%  Similarity=0.353  Sum_probs=77.2

Q ss_pred             hhhccCCCcE-e-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          139 LLAIEGRDYV-L-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       139 ~~g~~~pdf~-~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      ..+.++|+|. + +.++....+++.+||++||+||++||++|+.+.+.+   .+++++++     ++.++.|+++...  
T Consensus         5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----~~~~~~vd~~~~~--   77 (134)
T 2fwh_A            5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANVTAND--   77 (134)
T ss_dssp             -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----TSEEEEEECTTCC--
T ss_pred             cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----CcEEEEEeCCCCc--
Confidence            4567789998 4 566666777888899999999999999999999998   88888774     3888888887531  


Q ss_pred             HHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                                       +....++++|++.++|+++++|++|+++
T Consensus        78 -----------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           78 -----------------AQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             -----------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             -----------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence                             2357899999999999999999999998

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.66  E-value=6.9e-16  Score=117.46  Aligned_cols=72  Identities=22%  Similarity=0.499  Sum_probs=62.9

Q ss_pred             ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       160 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      +..+|+++|+|||+||++|+.+.|.+.++++.++     ++.++.|++|..                       .+++++
T Consensus        17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~d~~-----------------------~~l~~~   68 (105)
T 3zzx_A           17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-----DVVFLKVDVDEC-----------------------EDIAQD   68 (105)
T ss_dssp             HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TEEEEEEETTTC-----------------------HHHHHH
T ss_pred             hcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-----CeEEEEEecccC-----------------------HHHHHH
Confidence            3457999999999999999999999999998874     477778877754                       689999


Q ss_pred             cCcCceeeEEEECCCCceEec
Q 018726          240 FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~v~~~  260 (351)
                      |+|.++||++++ ++|+++.+
T Consensus        69 ~~V~~~PT~~~~-~~G~~v~~   88 (105)
T 3zzx_A           69 NQIACMPTFLFM-KNGQKLDS   88 (105)
T ss_dssp             TTCCBSSEEEEE-ETTEEEEE
T ss_pred             cCCCeecEEEEE-ECCEEEEE
Confidence            999999999999 89998877

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.65  E-value=1.2e-15  Score=122.38  Aligned_cols=83  Identities=24%  Similarity=0.420  Sum_probs=75.0

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      +.++....++.++||+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                   
T Consensus        38 ~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-------------------   94 (141)
T 3hxs_A           38 DYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA----GKIYIYKVNVDKE-------------------   94 (141)
T ss_dssp             CCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-------------------
T ss_pred             ccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CceEEEEEECCCC-------------------
Confidence            56677888888899999999999999999999999999999987    5689999998865                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceEe
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~  259 (351)
                          ..++++|+|.++|+++++|++|+++.
T Consensus        95 ----~~~~~~~~v~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           95 ----PELARDFGIQSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             ----HHHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred             ----HHHHHHcCCCCcCEEEEEeCCCCEEE
Confidence                68999999999999999999999873

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.64  E-value=7e-16  Score=135.68  Aligned_cols=184  Identities=15%  Similarity=0.195  Sum_probs=108.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceeeec-C-hHHHH-----
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAVPF-D-ETLHK-----  112 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~~~-~-~~~~~-----  112 (351)
                      .+|+++|+|||+||++|+++.|.+.++++++++.+..+.++.|+++.+ ...+++.+++..+|++.+ + ++...     
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~  108 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVF  108 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECTTCCSSSCEEC
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeE
Confidence            569999999999999999999999999999987433377777777644 335788888888888887 3 22111     


Q ss_pred             HHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCccee--ecccCCcEEEEEEecCCChhhHHhHHHHHHHHH
Q 018726          113 KLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT--VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYN  190 (351)
Q Consensus       113 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~--l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~  190 (351)
                      .+.+ ...+.+...+........ ... ....|.+.. .+...+.  +..-..+++++.|....+...+.       +..
T Consensus       109 ~~~g-~~~~~l~~~i~~~l~~~~-~~~-p~~~p~l~~-~~~~~l~~~~~~~~~~~~al~f~~~~~~~~~~-------~~~  177 (244)
T 3q6o_A          109 PVAG-ADVQTLRERLIDALESHH-DTW-PPACPPLEP-AXLEEIDGFFARNNEEYLALIFEXGGSYLARE-------VAL  177 (244)
T ss_dssp             CCTT-CCHHHHHHHHHHHHHTCT-TSC-CTTSCCCSC-CCHHHHHTHHHHCCCSEEEEEEECTTCCHHHH-------HHH
T ss_pred             ecCC-CCHHHHHHHHHHHHHhcc-ccC-CCCCCCccc-ccHHHHHHHhhcCCCceEEEEEEECCcchHHH-------HHH
Confidence            2222 233334333332222111 000 011122221 0011110  11123467777777765433332       222


Q ss_pred             HhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          191 ELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       191 ~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      .+..  ...+.+..+. +.                       ...++++|||.++|++++++++|++...+
T Consensus       178 d~~~--~~~i~v~~~~-~~-----------------------~~~l~~~f~v~~~Pslvl~~~~g~~~~~~  222 (244)
T 3q6o_A          178 DLSQ--HKGVAVRRVL-NT-----------------------EANVVRKFGVTDFPSCYLLFRNGSVSRVP  222 (244)
T ss_dssp             HTTT--CTTEEEEEEE-TT-----------------------CHHHHHHHTCCCSSEEEEEETTSCEEECC
T ss_pred             Hhcc--CCceEEEEEe-Cc-----------------------hHHHHHHcCCCCCCeEEEEeCCCCeEeec
Confidence            3321  1344443332 22                       37899999999999999999999988764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.64  E-value=1.3e-15  Score=120.22  Aligned_cols=90  Identities=19%  Similarity=0.408  Sum_probs=75.4

Q ss_pred             ccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccC
Q 018726          142 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM  221 (351)
Q Consensus       142 ~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  221 (351)
                      .++|++. ..+++.++....+||+++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..           
T Consensus        22 ~~~~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~v~~~~vd~d~~-----------   85 (128)
T 3ul3_B           22 KKVPRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG----KRIYLLKVDLDKN-----------   85 (128)
T ss_dssp             ----CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG----GGEEEEEEEGGGC-----------
T ss_pred             ccCCccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEECCCC-----------
Confidence            3455555 55566677778889999999999999999999999999999997    5789999988864           


Q ss_pred             CceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          222 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       222 ~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                                  ..++++|+|.++||++++ ++|+++.+
T Consensus        86 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  111 (128)
T 3ul3_B           86 ------------ESLARKFSVKSLPTIILL-KNKTMLAR  111 (128)
T ss_dssp             ------------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ------------HHHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence                        689999999999999999 79998876

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.62  E-value=7.6e-16  Score=127.29  Aligned_cols=118  Identities=13%  Similarity=0.124  Sum_probs=96.1

Q ss_pred             hhhccCCCcEe-cCCC----------cceeeccc-CCcE-EEEEEecCCChhhHH-hHHHHHHHHHHhhcccCCce-EEE
Q 018726          139 LLAIEGRDYVL-SRDH----------RKITVSEL-AGKT-IGLYFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVV  203 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g----------~~~~l~~~-~gk~-vll~F~a~~C~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv  203 (351)
                      .+|++.|+.++ ...+          ++++++++ +||+ ||++||+.|||.|.. +++.|.+.+++|++   .++ +|+
T Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~---~g~d~Vi   87 (176)
T 4f82_A           11 QVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRA---AGIDEIW   87 (176)
T ss_dssp             CTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCEEE
T ss_pred             hcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHh---CCCCEEE
Confidence            46899999887 3322          67899997 9985 456778999999999 99999999999987   889 999


Q ss_pred             EEeCCCCHHHHHhhhccCCce-eeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          204 LVSTDRDHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       204 ~v~~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      +||+|. ....+++.+..+.. .+|+..|.+..+++.||+.           ..|+++|| ++|+|++..
T Consensus        88 gIS~D~-~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~  155 (176)
T 4f82_A           88 CVSVND-AFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA  155 (176)
T ss_dssp             EEESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             EEeCCC-HHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence            999994 55666666655532 4888889889999999973           24889999 999999884

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.60  E-value=4.7e-15  Score=120.01  Aligned_cols=92  Identities=26%  Similarity=0.385  Sum_probs=78.4

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      +.++++..+ .++++.+......+|+++|+||++||++|+.+.|.|+++++++.    .++.++.|++|..         
T Consensus        32 ~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~~~~---------   98 (148)
T 3p2a_A           32 GHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA----GKVRFVKVNTEAE---------   98 (148)
T ss_dssp             CCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC---------
T ss_pred             CCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC----CceEEEEEECcCC---------
Confidence            455566666 77777776655678999999999999999999999999999987    5688999988864         


Q ss_pred             cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                                    ..++++|+|.++||++++ ++|+++.+
T Consensus        99 --------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  124 (148)
T 3p2a_A           99 --------------PALSTRFRIRSIPTIMLY-RNGKMIDM  124 (148)
T ss_dssp             --------------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             --------------HHHHHHCCCCccCEEEEE-ECCeEEEE
Confidence                          688999999999999999 79998876

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.59  E-value=1.7e-15  Score=123.62  Aligned_cols=102  Identities=23%  Similarity=0.401  Sum_probs=78.4

Q ss_pred             hccCCCcEecCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          141 AIEGRDYVLSRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       141 g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      +...++|  ...++.++++..+||+++|+|| ++||++|+.+.|.|   .++.+.+.    .++.++.|+++...     
T Consensus        27 ~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~----~~~~~v~vd~~~~~-----   95 (154)
T 2ju5_A           27 AAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG----VHLHMVEVDFPQKN-----   95 (154)
T ss_dssp             CCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH----HHCEEEEEECCSSC-----
T ss_pred             ccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc----CcEEEEEecCcccc-----
Confidence            4445555  3346677888888999999999 99999999999999   77766554    56788888877542     


Q ss_pred             hhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                         .   +.++ ..+....+++.|+|.++||++|+|++|+++.+
T Consensus        96 ---~---~~~~-~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~  132 (154)
T 2ju5_A           96 ---H---QPEE-QRQKNQELKAQYKVTGFPELVFIDAEGKQLAR  132 (154)
T ss_dssp             ---C---CCHH-HHHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             ---C---CChh-hHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence               0   1111 12446789999999999999999999999987

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.59  E-value=3.6e-15  Score=119.47  Aligned_cols=69  Identities=16%  Similarity=0.358  Sum_probs=62.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++|||.|||+||+||+.+.|.|.++++++.    ..+.|+.|++|..                       .+++..|+
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~----~~v~f~kVDVDe~-----------------------~e~a~~y~   92 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIK----NFCVIYLVDITEV-----------------------PDFNTMYE   92 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTTTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999996    5688999999874                       68899999


Q ss_pred             cCceeeEEEECCCCceE
Q 018726          242 IKGIPALVLIGPDGKTI  258 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~  258 (351)
                      |.++||++++ ++|+.+
T Consensus        93 V~siPT~~fF-k~G~~v  108 (160)
T 2av4_A           93 LYDPVSVMFF-YRNKHM  108 (160)
T ss_dssp             CCSSEEEEEE-ETTEEE
T ss_pred             CCCCCEEEEE-ECCEEE
Confidence            9999999999 788887

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.57  E-value=8.9e-16  Score=127.56  Aligned_cols=102  Identities=15%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             ceeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHH--HHhhhccCCceeeccC
Q 018726          155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKE--FDLNHSIMPWLAIPYE  229 (351)
Q Consensus       155 ~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~--~~~~~~~~~~~~~~~~  229 (351)
                      .+.++..+||+++|+|||+||++|+.+.+.+   .++.+.++    .++.++.|++|...+.  ............+...
T Consensus        39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~----~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~  114 (172)
T 3f9u_A           39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN----NDYVLITLYVDNKTPLTEPVKIMENGTERTLRTV  114 (172)
T ss_dssp             HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH----HHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CCEEEEEEecCcccccchhhhhhhcchhhhhhhh
Confidence            3445556799999999999999999975444   55555554    4688999999865311  0001111112222233


Q ss_pred             chhhHHH-HHHcCcCceeeEEEECCCCceEec
Q 018726          230 DRARQDL-CRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       230 ~d~~~~~-~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+....+ .+.|++.++||++|+|++|+++.+
T Consensus       115 ~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~  146 (172)
T 3f9u_A          115 GDKWSYLQRVKFGANAQPFYVLIDNEGNPLNK  146 (172)
T ss_dssp             HHHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred             hhhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence            3333333 589999999999999999999987

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.57  E-value=3.4e-15  Score=117.68  Aligned_cols=75  Identities=17%  Similarity=0.299  Sum_probs=67.5

Q ss_pred             cEEEEEEecCCC--hhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          164 KTIGLYFGAHWC--PPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       164 k~vll~F~a~~C--~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +++||+|||+||  ++|+.+.|.|.++.++|.    +++.|+.|++|.                       +..++.+|+
T Consensus        34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~----~~v~~~KVdvDe-----------------------~~~la~~yg   86 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFP----GRLVAAEVAAEA-----------------------ERGLMARFG   86 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHHHHHHHHHHHHTST----TTEEEEEECGGG-----------------------HHHHHHHHT
T ss_pred             CcEEEEEeCCccCCCchhhHHhHHHHHHHHcc----CCcEEEEEECCC-----------------------CHHHHHHcC
Confidence            499999999999  999999999999999996    678999998885                       479999999


Q ss_pred             cCceeeEEEECCCCceEeccccceeeccCCcC
Q 018726          242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA  273 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~  273 (351)
                      |.++||++++ ++|+++.+       ..|...
T Consensus        87 V~siPTlilF-kdG~~v~~-------~vG~~~  110 (137)
T 2qsi_A           87 VAVCPSLAVV-QPERTLGV-------IAKIQD  110 (137)
T ss_dssp             CCSSSEEEEE-ECCEEEEE-------EESCCC
T ss_pred             CccCCEEEEE-ECCEEEEE-------EeCCCC
Confidence            9999999999 89999888       567654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.56  E-value=1.3e-14  Score=140.56  Aligned_cols=184  Identities=15%  Similarity=0.187  Sum_probs=110.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceeeec-C-hHH----HHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAVPF-D-ETL----HKK  113 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~~~-~-~~~----~~~  113 (351)
                      .+|+|+|+|||+||++|++++|.++++++++++.+..+.++.|+++.+ ...+++.+++..+|++.+ + |+.    ...
T Consensus        29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~  108 (519)
T 3t58_A           29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATL  108 (519)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEE
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeE
Confidence            579999999999999999999999999999987433477777777654 345788888888888887 3 211    122


Q ss_pred             HhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCccee--ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHH
Q 018726          114 LRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT--VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE  191 (351)
Q Consensus       114 l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~--l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~  191 (351)
                      ..+....+.+...+........ ... ....|.+.. .+.+.+.  ++.-..++++|.|....-       ....++...
T Consensus       109 ~~g~~~~~~L~~~l~~~l~~~~-~~~-P~~~p~l~~-it~~~l~~~l~~~~~~~vallF~~~~s-------~~~~~~~ld  178 (519)
T 3t58_A          109 PGAGANVQTLRMRLIDALESHR-DTW-PPACPPLEP-AKLNDIDGFFTRNKADYLALVFEREDS-------YLGREVTLD  178 (519)
T ss_dssp             CCSSCCHHHHHHHHHHHHTTCC-SCC-CTTCCCCSB-CCHHHHTTGGGSCCCSEEEEEEECTTC-------CHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHhhcc-ccC-CCCCCccCc-CCHHHHHHHhccCCCCeEEEEecCCch-------HHHHHHHHH
Confidence            2233333444443333222111 000 000111111 1111110  112235688888886541       133444445


Q ss_pred             hhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          192 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       192 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +..  ..++.|..+ .+.                       +..+.++|||..+|++++++++|++...
T Consensus       179 l~~--~~~v~v~~v-~~~-----------------------~~~l~~kfgV~~~Pslvl~~~nGk~~~~  221 (519)
T 3t58_A          179 LSQ--YHAVAVRRV-LNT-----------------------ESDLVNKFGVTDFPSCYLLLRNGSVSRV  221 (519)
T ss_dssp             TTT--CTTEEEEEE-ETT-----------------------CHHHHHHHTCCCSSEEEEEETTSCEEEC
T ss_pred             hhc--cCCeeEEEe-cCc-----------------------hHHHHHHcCCCCCCeEEEEeCCCceeec
Confidence            542  244554333 232                       3789999999999999999999987544

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.56  E-value=1.8e-14  Score=114.30  Aligned_cols=78  Identities=31%  Similarity=0.537  Sum_probs=66.9

Q ss_pred             ccCCcEEEEEEecCCChhhHHhHHHHH--HHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          160 ELAGKTIGLYFGAHWCPPCRSFTSQLI--EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       160 ~~~gk~vll~F~a~~C~~C~~~~~~l~--~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      ..+||+++|+||++||++|+.+.|.|.  ++.++++    .++.++.|+++..                    +....++
T Consensus        26 ~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~----~~~~~~~vd~~~~--------------------~~~~~l~   81 (133)
T 3fk8_A           26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA----KHFEVVKIDVGNF--------------------DRNLELS   81 (133)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH----HHCEEEEEECTTT--------------------TSSHHHH
T ss_pred             HhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc----CCEEEEEEeCCcc--------------------cchHHHH
Confidence            346899999999999999999999999  9999886    4688999988420                    0146899


Q ss_pred             HHcCc---CceeeEEEECCCCceEecc
Q 018726          238 RIFNI---KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       238 ~~~~i---~~~P~~~lid~~G~v~~~~  261 (351)
                      ++|++   .++|+++++|++|+++.+.
T Consensus        82 ~~~~v~~~~~~Pt~~~~d~~G~~~~~~  108 (133)
T 3fk8_A           82 QAYGDPIQDGIPAVVVVNSDGKVRYTT  108 (133)
T ss_dssp             HHTTCGGGGCSSEEEEECTTSCEEEEC
T ss_pred             HHhCCccCCccceEEEECCCCCEEEEe
Confidence            99999   9999999999999999874

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.55  E-value=4.1e-15  Score=117.70  Aligned_cols=77  Identities=13%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             CCcEEEEEEecCC--ChhhHHhHHHHHHHHHHhhcccCCc-eEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          162 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHC-FEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       162 ~gk~vll~F~a~~--C~~C~~~~~~l~~l~~~~~~~~~~~-~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      .++++||+|||+|  |++|+.+.|.|.+++++|.    ++ +.|+.|++|.                       +.+++.
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~----g~~v~~~KVdvDe-----------------------~~~lA~   85 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP----DYTWQVAIADLEQ-----------------------SEAIGD   85 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT----TSCCEEEECCHHH-----------------------HHHHHH
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC----CCeEEEEEEECCC-----------------------CHHHHH
Confidence            4578999999999  9999999999999999987    45 8898888875                       479999


Q ss_pred             HcCcCceeeEEEECCCCceEeccccceeeccCCcC
Q 018726          239 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKA  273 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~  273 (351)
                      +|||.++||++++ ++|+++.+       ..|+..
T Consensus        86 ~ygV~sIPTlilF-k~G~~v~~-------~~G~~~  112 (140)
T 2qgv_A           86 RFGAFRFPATLVF-TGGNYRGV-------LNGIHP  112 (140)
T ss_dssp             HHTCCSSSEEEEE-ETTEEEEE-------EESCCC
T ss_pred             HcCCccCCEEEEE-ECCEEEEE-------EecCCC
Confidence            9999999999999 99999887       567553

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.55  E-value=2.2e-14  Score=109.16  Aligned_cols=83  Identities=16%  Similarity=0.317  Sum_probs=70.4

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++++.+...-.++++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..                   
T Consensus         8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-------------------   64 (109)
T 3tco_A            8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK----GKAVFGRLNVDEN-------------------   64 (109)
T ss_dssp             ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTC-------------------
T ss_pred             EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC----CCceEEEEccccC-------------------
Confidence            44455555433458999999999999999999999999999987    4688999988864                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                          ..++++|++.++|+++++ ++|+++.+
T Consensus        65 ----~~~~~~~~i~~~Pt~~~~-~~g~~~~~   90 (109)
T 3tco_A           65 ----QKIADKYSVLNIPTTLIF-VNGQLVDS   90 (109)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----HHHHHhcCcccCCEEEEE-cCCcEEEe
Confidence                688999999999999999 99998876

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.55  E-value=1.6e-14  Score=114.00  Aligned_cols=92  Identities=23%  Similarity=0.396  Sum_probs=71.1

Q ss_pred             hccCCCcEecCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          141 AIEGRDYVLSRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       141 g~~~pdf~~~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      +..+++-.+.++++.+.... -++++++|+||++||++|+.+.|.+++++++++    .++.++.|++|..         
T Consensus        17 ~~~m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~~~~---------   83 (128)
T 2o8v_B           17 RGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ----GKLTVAKLNIDQN---------   83 (128)
T ss_dssp             ----CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT----TTEEEEEEETTTC---------
T ss_pred             ccccccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEECCCC---------
Confidence            33444323344555554322 257999999999999999999999999999986    4689999998864         


Q ss_pred             cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                                    ..++++|++.++||++++ ++|+++.+
T Consensus        84 --------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  109 (128)
T 2o8v_B           84 --------------PGTAPKYGIRGIPTLLLF-KNGEVAAT  109 (128)
T ss_dssp             --------------CTTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred             --------------HHHHHHcCCCccCEEEEE-eCCEEEEE
Confidence                          467889999999999999 99998876

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.55  E-value=1.9e-14  Score=110.62  Aligned_cols=71  Identities=24%  Similarity=0.504  Sum_probs=64.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   68 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG----DKLKIVKIDVDEN-----------------------QETAGKYG   68 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------CSHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence            78999999999999999999999999999987    4689999998864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~G~~~~~   86 (112)
T 2voc_A           69 VMSIPTLLVL-KDGEVVET   86 (112)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999999999 99999876

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.55  E-value=3.7e-14  Score=113.02  Aligned_cols=71  Identities=30%  Similarity=0.543  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   89 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYD----GQIVIYKVDTEKE-----------------------QELAGAFG   89 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCEEEEEEeCCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999987    4688999998864                       68899999


Q ss_pred             cCceeeEEEECCCCceEe
Q 018726          242 IKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~  259 (351)
                      +.++||++++|++|+++.
T Consensus        90 v~~~Pt~~~~~~~G~~~~  107 (136)
T 2l5l_A           90 IRSIPSILFIPMEGKPEM  107 (136)
T ss_dssp             CCSSCEEEEECSSSCCEE
T ss_pred             CCCCCEEEEECCCCcEEE
Confidence            999999999999999873

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.54  E-value=1.9e-14  Score=111.48  Aligned_cols=73  Identities=18%  Similarity=0.395  Sum_probs=64.2

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ++.++|+++|+||++||++|+.+.|.|.+++++++    . +.++.|++|..                       ..+++
T Consensus        27 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~-v~~~~vd~d~~-----------------------~~l~~   78 (116)
T 3qfa_C           27 DAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS----N-VIFLEVDVDDC-----------------------QDVAS   78 (116)
T ss_dssp             HHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT----T-SEEEEEETTTT-----------------------HHHHH
T ss_pred             HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-CEEEEEECCCC-----------------------HHHHH
Confidence            33468999999999999999999999999988875    3 88888988864                       68999


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|+|.++||++++ ++|+++.+
T Consensus        79 ~~~v~~~Pt~~~~-~~G~~~~~   99 (116)
T 3qfa_C           79 ECEVKSMPTFQFF-KKGQKVGE   99 (116)
T ss_dssp             HTTCCSSSEEEEE-SSSSEEEE
T ss_pred             HcCCccccEEEEE-eCCeEEEE
Confidence            9999999999999 89998876

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.54  E-value=2e-14  Score=110.00  Aligned_cols=77  Identities=18%  Similarity=0.403  Sum_probs=65.4

Q ss_pred             ceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726          155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  234 (351)
Q Consensus       155 ~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~  234 (351)
                      .+.....++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       .
T Consensus        16 ~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----~~~~~~vd~~~~-----------------------~   67 (109)
T 3f3q_A           16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----QADFYKLDVDEL-----------------------G   67 (109)
T ss_dssp             HHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------H
T ss_pred             HHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEECCCC-----------------------H
Confidence            333333458999999999999999999999999999885     378888888764                       6


Q ss_pred             HHHHHcCcCceeeEEEECCCCceEec
Q 018726          235 DLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       235 ~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .++++|+|.++||+++++ +|+++.+
T Consensus        68 ~l~~~~~v~~~Pt~~~~~-~G~~~~~   92 (109)
T 3f3q_A           68 DVAQKNEVSAMPTLLLFK-NGKEVAK   92 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred             HHHHHcCCCccCEEEEEE-CCEEEEE
Confidence            889999999999999995 9998877

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.54  E-value=2.4e-14  Score=108.40  Aligned_cols=81  Identities=22%  Similarity=0.422  Sum_probs=67.6

Q ss_pred             CCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCch
Q 018726          152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR  231 (351)
Q Consensus       152 ~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d  231 (351)
                      +.+.+......+|+++|.||++||++|+.+.|.+++++++++    .++.++.|++|.+                     
T Consensus         6 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~~---------------------   60 (105)
T 1nsw_A            6 TDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNVDEN---------------------   60 (105)
T ss_dssp             CTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TTCEEEEEETTTC---------------------
T ss_pred             cHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECcCC---------------------
Confidence            334444222357899999999999999999999999999886    4589999998864                     


Q ss_pred             hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          232 ARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       232 ~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                        ..++++|++.++|+++++ ++|+++.+
T Consensus        61 --~~~~~~~~v~~~Pt~~~~-~~G~~~~~   86 (105)
T 1nsw_A           61 --PETTSQFGIMSIPTLILF-KGGRPVKQ   86 (105)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             --HHHHHHcCCccccEEEEE-eCCeEEEE
Confidence              678999999999999999 89998876

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.4e-14  Score=114.40  Aligned_cols=81  Identities=16%  Similarity=0.410  Sum_probs=66.4

Q ss_pred             ceeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCch
Q 018726          155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR  231 (351)
Q Consensus       155 ~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d  231 (351)
                      .+.++..+||+++|+||++||++|+.+.|.+   ..+.+.++    .++.++.|+++.+.                    
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~--------------------   74 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN----RHFVNLKMDMEKGE--------------------   74 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH----HHSEEEEECSSSTT--------------------
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh----cCeEEEEEecCCcc--------------------
Confidence            3455556799999999999999999999998   66666654    45677777776421                    


Q ss_pred             hhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          232 ARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       232 ~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                       ...++++|++.++|+++++|++|+++.+
T Consensus        75 -~~~~~~~~~v~~~Pt~~~~d~~G~~~~~  102 (130)
T 2kuc_A           75 -GVELRKKYGVHAYPTLLFINSSGEVVYR  102 (130)
T ss_dssp             -HHHHHHHTTCCSSCEEEEECTTSCEEEE
T ss_pred             -hHHHHHHcCCCCCCEEEEECCCCcEEEE
Confidence             4789999999999999999999999876

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.53  E-value=3.6e-14  Score=107.68  Aligned_cols=70  Identities=16%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.++++++++     +++.++.|++|..                       ..++++|+
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-----~~~~~~~vd~~~~-----------------------~~l~~~~~   68 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENY-----NYVEKIEILLQDM-----------------------QEIAGRYA   68 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTC-----TTEEEEEEEECCC-------------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHc-----CCceEEEEECCCC-----------------------HHHHHhcC
Confidence            5799999999999999999999999999877     3588999988864                       57889999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~G~~~~~   86 (105)
T 4euy_A           69 VFTGPTVLLF-YNGKEILR   86 (105)
T ss_dssp             -CCCCEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-eCCeEEEE
Confidence            9999999999 69998876

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.52  E-value=7.5e-14  Score=105.70  Aligned_cols=71  Identities=18%  Similarity=0.396  Sum_probs=64.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   70 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYE----GKADILKLDVDEN-----------------------PSTAAKYE   70 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCcEEEEEECCcC-----------------------HHHHHhCC
Confidence            78999999999999999999999999999987    4589999998865                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        71 v~~~Pt~~~~-~~G~~~~~   88 (106)
T 3die_A           71 VMSIPTLIVF-KDGQPVDK   88 (106)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CcccCEEEEE-eCCeEEEE
Confidence            9999999999 59988876

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.52  E-value=7.4e-14  Score=106.24  Aligned_cols=83  Identities=25%  Similarity=0.475  Sum_probs=68.4

Q ss_pred             cCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++++.+...- -.+|+++|.||++||++|+.+.|.+.+++++++    .++.++.|+++.+                  
T Consensus         6 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~------------------   63 (108)
T 2trx_A            6 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN------------------   63 (108)
T ss_dssp             ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC------------------
T ss_pred             ecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC----CCcEEEEEECCCC------------------
Confidence            34444444222 257899999999999999999999999999886    4689999988864                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                           ..++++|++.++|+++++ ++|+++.+
T Consensus        64 -----~~~~~~~~v~~~Pt~~~~-~~G~~~~~   89 (108)
T 2trx_A           64 -----PGTAPKYGIRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             -----TTHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHHcCCcccCEEEEE-eCCEEEEE
Confidence                 578899999999999999 89998876

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.52  E-value=2.7e-14  Score=114.10  Aligned_cols=97  Identities=25%  Similarity=0.496  Sum_probs=75.8

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      ..+..+||+++|+||++||++|+.+.|.|++++++++     ++.++.|++|..                       ..+
T Consensus        40 ~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~v~~~~~-----------------------~~~   91 (139)
T 3d22_A           40 SEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-----SLMFLVIDVDEL-----------------------SDF   91 (139)
T ss_dssp             HHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHH
T ss_pred             HHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEEEeCccc-----------------------HHH
Confidence            3344568999999999999999999999999998873     588999988864                       689


Q ss_pred             HHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCcCCC
Q 018726          237 CRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR  297 (351)
Q Consensus       237 ~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~  297 (351)
                      ++.|++.++||++++ ++|+++.+       ..|.     .   .+++.+.+++.+..+|.
T Consensus        92 ~~~~~v~~~Pt~~~~-~~G~~~~~-------~~G~-----~---~~~l~~~l~~~~~~~~~  136 (139)
T 3d22_A           92 SASWEIKATPTFFFL-RDGQQVDK-------LVGA-----N---KPELHKKITAILDSLPP  136 (139)
T ss_dssp             HHHTTCCEESEEEEE-ETTEEEEE-------EESC-----C---HHHHHHHHHHHHHTSCT
T ss_pred             HHHcCCCcccEEEEE-cCCeEEEE-------EeCC-----C---HHHHHHHHHHHhccCCC
Confidence            999999999999999 99999876       3443     1   23455555555555554

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.52  E-value=1.1e-14  Score=117.99  Aligned_cols=109  Identities=8%  Similarity=0.138  Sum_probs=76.6

Q ss_pred             ecccCCcEEEEEEecCCChhhHHhHHHHHHHHH--HhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYN--ELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       158 l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~--~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      .+..+||+|+|+|||+||++|+.+.|.+.+..+  ++.     +..++.|++|.+.                      ..
T Consensus        39 ~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-----~~~fv~V~vD~e~----------------------~~   91 (151)
T 3ph9_A           39 YAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-----QNKFIMLNLMHET----------------------TD   91 (151)
T ss_dssp             HHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-----HHTCEEEEESSCC----------------------SC
T ss_pred             HHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-----hcCeEEEEecCCc----------------------hh
Confidence            334468999999999999999999999876422  221     1236667776431                      23


Q ss_pred             HHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCcCCC
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR  297 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~  297 (351)
                      ++..|++.++||++++|++|+++.+..+    ..+...|........++.+.+++.++.+..
T Consensus        92 ~~~~~~v~~~PT~~f~~~~G~~v~~~~G----~~~~~~~~~~~~~~~~ll~~~~~al~~~~~  149 (151)
T 3ph9_A           92 KNLSPDGQYVPRIMFVDPSLTVRADIAG----RYSNRLYTYEPRDLPLLIENMKKALRLIQS  149 (151)
T ss_dssp             GGGCTTCCCSSEEEEECTTSCBCTTCCC----SCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred             hHhhcCCCCCCEEEEECCCCCEEEEEeC----CcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence            4567899999999999999999987311    222344556677788888888877776653

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.52  E-value=2.1e-14  Score=116.38  Aligned_cols=69  Identities=26%  Similarity=0.407  Sum_probs=61.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|++||+|||+||++|+.+.|.|.+++++++    ..+.++.|++|..                       ..++++|+
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~   74 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS----KMAAIYLVDVDQT-----------------------AVYTQYFD   74 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT----TTEEEEEEETTTC-----------------------CHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEECCcC-----------------------HHHHHHcC
Confidence            47999999999999999999999999998886    4589999998864                       58999999


Q ss_pred             cCceeeEEEECCCCceE
Q 018726          242 IKGIPALVLIGPDGKTI  258 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~  258 (351)
                      |.++||++++ ++|+++
T Consensus        75 v~~~Pt~~~~-~~G~~v   90 (149)
T 3gix_A           75 ISYIPSTVFF-FNGQHM   90 (149)
T ss_dssp             CCSSSEEEEE-ETTEEE
T ss_pred             CCccCeEEEE-ECCeEE
Confidence            9999999955 899988

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.52  E-value=1.2e-13  Score=104.87  Aligned_cols=71  Identities=27%  Similarity=0.543  Sum_probs=63.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   70 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNTDES-----------------------PNVASEYG   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence            47899999999999999999999999999887    4588999988864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        71 v~~~Pt~~~~-~~G~~~~~   88 (107)
T 1dby_A           71 IRSIPTIMVF-KGGKKCET   88 (107)
T ss_dssp             CCSSCEEEEE-SSSSEEEE
T ss_pred             CCcCCEEEEE-eCCEEEEE
Confidence            9999999888 79998876

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.52  E-value=1.1e-14  Score=120.18  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=63.3

Q ss_pred             ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       158 l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      +++++|++++|+|||+|||||+.+.|.|+++++++     +++.|+.|++|.                       ..+++
T Consensus        49 l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~-----~~v~~~~v~~d~-----------------------~~~~~  100 (167)
T 1z6n_A           49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-----PNIELAIISKGR-----------------------AEDDL  100 (167)
T ss_dssp             HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-----TTEEEEEECHHH-----------------------HHHHT
T ss_pred             HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHC-----CCcEEEEEECCC-----------------------CHHHH
Confidence            56678999999999999999999999999998876     357888887764                       24566


Q ss_pred             HHcC---cCceeeEEEECCCCceEec
Q 018726          238 RIFN---IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       238 ~~~~---i~~~P~~~lid~~G~v~~~  260 (351)
                      +.|+   +.++||++++|.+|+++.+
T Consensus       101 ~~~~~~~v~~iPt~i~~~~~G~~~~~  126 (167)
T 1z6n_A          101 RQRLALERIAIPLVLVLDEEFNLLGR  126 (167)
T ss_dssp             TTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred             HHHHHcCCCCcCeEEEECCCCCEEEE
Confidence            6675   9999999999999999876

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.51  E-value=8.6e-14  Score=106.68  Aligned_cols=71  Identities=25%  Similarity=0.492  Sum_probs=63.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.+.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   74 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG----DKIEIVKLNIDEN-----------------------PGTAAKYG   74 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc----CCeEEEEEEcCCC-----------------------HHHHHhCC
Confidence            47899999999999999999999999999986    4589999998864                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        75 v~~~Pt~~~~-~~G~~~~~   92 (112)
T 1t00_A           75 VMSIPTLNVY-QGGEVAKT   92 (112)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999999888 89998876

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.51  E-value=9e-14  Score=106.49  Aligned_cols=74  Identities=12%  Similarity=0.328  Sum_probs=62.6

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      .+.++++++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                      ...+++
T Consensus        20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~----------------------~~~~~~   72 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAK   72 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHH
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----CeEEEEEecCcc----------------------hHHHHH
Confidence            33468999999999999999999999999998874     378888888743                      368999


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|++.++||+++ +++|+++.+
T Consensus        73 ~~~v~~~Pt~~~-~~~G~~~~~   93 (111)
T 2pu9_C           73 ELGIRVVPTFKI-LKENSVVGE   93 (111)
T ss_dssp             HHCCSBSSEEEE-ESSSSEEEE
T ss_pred             HcCCCeeeEEEE-EeCCcEEEE
Confidence            999999999555 499998876

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.50  E-value=9.5e-14  Score=121.36  Aligned_cols=85  Identities=20%  Similarity=0.397  Sum_probs=70.6

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++++.+.....+|++++|+|||+||++|+.+.|.|.+++++++. .+.++.++.|+++..                   
T Consensus        19 ~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~~-------------------   78 (241)
T 3idv_A           19 VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD-KDPPIPVAKIDATSA-------------------   78 (241)
T ss_dssp             EECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHT-SSSCCCEEEEETTTC-------------------
T ss_pred             EecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhh-cCCceEEEEEeccCC-------------------
Confidence            556666665555789999999999999999999999999999985 234488888888764                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceEe
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~  259 (351)
                          ..++++|+|.++||++++ ++|+++.
T Consensus        79 ----~~l~~~~~v~~~Pt~~~~-~~g~~~~  103 (241)
T 3idv_A           79 ----SVLASRFDVSGYPTIKIL-KKGQAVD  103 (241)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHhcCCCcCCEEEEE-cCCCccc
Confidence                689999999999999999 5676663

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.8e-13  Score=107.37  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++...+. ..++++ ++|+||++||++|+.+.|.|.+++++++.   .++.++.|+++..                   
T Consensus        11 ~l~~~~f~-~~~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~---~~v~~~~vd~~~~-------------------   66 (126)
T 1x5e_A           11 VITDENWR-ELLEGD-WMIEFYAPWCPACQNLQPEWESFAEWGED---LEVNIAKVDVTEQ-------------------   66 (126)
T ss_dssp             ECCTTTHH-HHTSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEETTTC-------------------
T ss_pred             EecHHHHH-HHhCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECcCC-------------------
Confidence            45555554 223444 89999999999999999999999999874   5789999998864                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                          ..++++|+|.++||++++ ++|++.
T Consensus        67 ----~~~~~~~~v~~~Pt~~~~-~~G~~~   90 (126)
T 1x5e_A           67 ----PGLSGRFIINALPTIYHC-KDGEFR   90 (126)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ----HHHHHHcCCcccCEEEEE-eCCeEE
Confidence                578999999999999999 889863

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.50  E-value=1.4e-13  Score=107.03  Aligned_cols=71  Identities=18%  Similarity=0.482  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~   82 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQH----GKVVMAKVDIDDH-----------------------TDLAIEYE   82 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TSSEEEEEETTTT-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeCCCC-----------------------HHHHHHcC
Confidence            57899999999999999999999999999886    4689999998864                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        83 v~~~Pt~~~~-~~G~~~~~  100 (119)
T 1w4v_A           83 VSAVPTVLAM-KNGDVVDK  100 (119)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCcEEEE
Confidence            9999999999 89998876

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.49  E-value=7.9e-14  Score=116.41  Aligned_cols=117  Identities=14%  Similarity=0.145  Sum_probs=92.3

Q ss_pred             hhccCCCcEe-c--C---------CC----cceeecc-cCCcEEEEEEe-cCCChhhH-HhHHHHHHHHHHh-hcccCCc
Q 018726          140 LAIEGRDYVL-S--R---------DH----RKITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNEL-KTTANHC  199 (351)
Q Consensus       140 ~g~~~pdf~~-~--~---------~g----~~~~l~~-~~gk~vll~F~-a~~C~~C~-~~~~~l~~l~~~~-~~~~~~~  199 (351)
                      +|+++|+|++ +  .         +|    +.+++++ ++||++||+|| +.|||.|. .+++.+.+.+++| ++   .+
T Consensus         3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~---~g   79 (182)
T 1xiy_A            3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE---NN   79 (182)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---SC
T ss_pred             CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh---CC
Confidence            6899999999 6  3         66    7899998 69998888775 57999999 9999999999999 86   78


Q ss_pred             e-EEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          200 F-EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       200 ~-~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      + .|++||.|. .....++.+..+...+++..|.+..+++.||+.           ..+.+|||| +|+|++..
T Consensus        80 ~~~V~gvS~D~-~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~  151 (182)
T 1xiy_A           80 FDDIYCITNND-IYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  151 (182)
T ss_dssp             CSEEEEEESSC-HHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             CcEEEEEeCCC-HHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence            8 499999995 333444444333225888889899999999973           257889998 99999874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.49  E-value=2.4e-13  Score=103.03  Aligned_cols=83  Identities=25%  Similarity=0.454  Sum_probs=68.9

Q ss_pred             cCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .+++..+.... -.+++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++..                  
T Consensus         6 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~------------------   63 (107)
T 2i4a_A            6 AVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA----GKVTVAKVNIDDN------------------   63 (107)
T ss_dssp             ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT----TSEEEEEEETTTC------------------
T ss_pred             ecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhC----CcEEEEEEECCCC------------------
Confidence            34444443222 357899999999999999999999999999987    4689999998864                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                           ..++++|++.++|+++++ ++|+++.+
T Consensus        64 -----~~~~~~~~v~~~Pt~~~~-~~G~~~~~   89 (107)
T 2i4a_A           64 -----PETPNAYQVRSIPTLMLV-RDGKVIDK   89 (107)
T ss_dssp             -----CHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHhcCCCccCEEEEE-eCCEEEEE
Confidence                 578999999999999999 99998876

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.49  E-value=1.9e-15  Score=124.74  Aligned_cols=81  Identities=16%  Similarity=0.353  Sum_probs=64.6

Q ss_pred             cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726          154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  233 (351)
Q Consensus       154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~  233 (351)
                      +.+.....+||++||+|||+||++|+.+.|.|.++.+.+.    .++.|+.|++|.+.                      
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~----~~~~~~~v~~d~~~----------------------   90 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE----LSHNFVMVNLEDEE----------------------   90 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH----HHTTSEEEEEEGGG----------------------
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhh----cCCeEEEEEecCCc----------------------
Confidence            5566666789999999999999999999999999876654    34567888877542                      


Q ss_pred             HHHHHHcCc--CceeeEEEECCCCceEec
Q 018726          234 QDLCRIFNI--KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       234 ~~~~~~~~i--~~~P~~~lid~~G~v~~~  260 (351)
                      ..+...|++  .++||++++|++|+++.+
T Consensus        91 ~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~  119 (164)
T 1sen_A           91 EPKDEDFSPDGGYIPRILFLDPSGKVHPE  119 (164)
T ss_dssp             SCSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred             hHHHHHhcccCCcCCeEEEECCCCCEEEE
Confidence            114566777  669999999999999877

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.49  E-value=8e-14  Score=106.93  Aligned_cols=72  Identities=22%  Similarity=0.579  Sum_probs=62.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.+.+++++++.   .++.++.|+++..                       ..++++|+
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~-----------------------~~~~~~~~   73 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN---SNVSFLSIDADEN-----------------------SEISELFE   73 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG---TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC---CCEEEEEEecccC-----------------------HHHHHHcC
Confidence            479999999999999999999999999998754   5689999998864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        74 v~~~Pt~~~~-~~G~~~~~   91 (112)
T 3d6i_A           74 ISAVPYFIII-HKGTILKE   91 (112)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCEEEEE
Confidence            9999999999 79998876

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.49  E-value=2.4e-13  Score=106.56  Aligned_cols=71  Identities=21%  Similarity=0.482  Sum_probs=62.9

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++|
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~   87 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDEL-----------------------KSVASDW   87 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTS-----------------------HHHHHHT
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CcEEEEEECccC-----------------------HHHHHHc
Confidence            368999999999999999999999999988874     588888888754                       6889999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++||++++ ++|+++.+
T Consensus        88 ~v~~~Pt~~~~-~~G~~~~~  106 (124)
T 1xfl_A           88 AIQAMPTFMFL-KEGKILDK  106 (124)
T ss_dssp             TCCSSSEEEEE-ETTEEEEE
T ss_pred             CCCccCEEEEE-ECCEEEEE
Confidence            99999998888 89998876

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.49  E-value=3.1e-14  Score=117.40  Aligned_cols=116  Identities=12%  Similarity=0.198  Sum_probs=93.4

Q ss_pred             hhhccCCCcEecCCC--cceeecc-cCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceE-EEEEeCCCCH--
Q 018726          139 LLAIEGRDYVLSRDH--RKITVSE-LAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFE-VVLVSTDRDH--  211 (351)
Q Consensus       139 ~~g~~~pdf~~~~~g--~~~~l~~-~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~-vv~v~~d~~~--  211 (351)
                      .+|+++|+|++..+|  +++++++ ++||++||+||. .|||.|..+++.+.+.+++|++   .++. |++||+|...  
T Consensus        15 ~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~---~gv~~VigIS~D~~~~~   91 (171)
T 2xhf_A           15 KVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKE---EGYHTIACIAVNDPFVM   91 (171)
T ss_dssp             CTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHH---TTCCEEEEEESSCHHHH
T ss_pred             cCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCCEEEEEeCCCHHHH
Confidence            579999999994344  8999999 599988888874 6999999999999999999987   7885 9999999532  


Q ss_pred             HHHHhhhccCCceeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEec
Q 018726          212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~  260 (351)
                      .+|.+.....  ..+|+..|.+.++++.||+.           ....++||| +|+|++.
T Consensus        92 ~~w~~~~~~~--~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~  148 (171)
T 2xhf_A           92 AAWGKTVDPE--HKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSV  148 (171)
T ss_dssp             HHHHHHHCTT--CCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred             HHHHHhcCCC--CCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEE
Confidence            3444443321  25788889899999999973           346789998 9999987

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.49  E-value=6.3e-14  Score=112.27  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=64.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   75 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG----SSAVFGRINIATN-----------------------PWTAEKYG   75 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCcC-----------------------HhHHHHCC
Confidence            47999999999999999999999999999997    4689999998865                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        76 v~~~Pt~~~~-~~G~~~~~   93 (140)
T 3hz4_A           76 VQGTPTFKFF-CHGRPVWE   93 (140)
T ss_dssp             CCEESEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-eCCcEEEE
Confidence            9999999999 88988766

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.48  E-value=1.6e-13  Score=112.01  Aligned_cols=71  Identities=24%  Similarity=0.491  Sum_probs=64.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .++++||+||++||++|+.+.|.|++++++++    .++.++.|++|..                       ..++++|+
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~  115 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA----GQVRLAKIDTQAH-----------------------PAVAGRHR  115 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTS-----------------------THHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCEEEEEEeCCcc-----------------------HHHHHHcC
Confidence            57899999999999999999999999999997    4689999998864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus       116 i~~~Pt~~~~-~~G~~~~~  133 (155)
T 2ppt_A          116 IQGIPAFILF-HKGRELAR  133 (155)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-eCCeEEEE
Confidence            9999999999 89998876

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=1.1e-13  Score=109.18  Aligned_cols=72  Identities=22%  Similarity=0.442  Sum_probs=62.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.|.+++++++    ..+.++.|++|..                       ..++++|+
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~l~~~~~   86 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALK----DVVKVGAVNADKH-----------------------QSLGGQYG   86 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT----TTSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc----CceEEEEEeCCCC-----------------------HHHHHHcC
Confidence            47899999999999999999999999999986    4588999988864                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||+++++++|+++.+
T Consensus        87 v~~~Pt~~~~~~~~~~~~~  105 (130)
T 2dml_A           87 VQGFPTIKIFGANKNKPED  105 (130)
T ss_dssp             CCSSSEEEEESSCTTSCEE
T ss_pred             CCccCEEEEEeCCCCeEEE
Confidence            9999999999888874433

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.48  E-value=2.2e-13  Score=104.74  Aligned_cols=83  Identities=20%  Similarity=0.452  Sum_probs=69.6

Q ss_pred             cCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++++.+.... -.+++++|.||++||++|+.+.|.|.+++++++    .++.++.|+++.+                  
T Consensus        11 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~~------------------   68 (115)
T 1thx_A           11 TITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEIDPN------------------   68 (115)
T ss_dssp             ECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEESTTC------------------
T ss_pred             EeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhC----CcEEEEEEEcCCC------------------
Confidence            44455554322 257899999999999999999999999999987    4589999998864                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                           ..++++|++.++|+++++ ++|+++.+
T Consensus        69 -----~~~~~~~~v~~~Pt~~~~-~~G~~~~~   94 (115)
T 1thx_A           69 -----PTTVKKYKVEGVPALRLV-KGEQILDS   94 (115)
T ss_dssp             -----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHHcCCCceeEEEEE-cCCEEEEE
Confidence                 578999999999999999 99998876

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.48  E-value=2.3e-13  Score=103.99  Aligned_cols=71  Identities=24%  Similarity=0.478  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   73 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYE----ESFGFYYVDVEEE-----------------------KTLFQRFS   73 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCcC-----------------------hhHHHhcC
Confidence            57899999999999999999999999999986    4689999998864                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        74 v~~~Pt~~~~-~~g~~~~~   91 (111)
T 3gnj_A           74 LKGVPQILYF-KDGEYKGK   91 (111)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-ECCEEEEE
Confidence            9999999999 78988766

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.48  E-value=1.2e-13  Score=110.82  Aligned_cols=78  Identities=40%  Similarity=0.894  Sum_probs=71.5

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhh-cCCcEEEEEEEecCChhhHHHHHhcCCceee
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAV  104 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (351)
                      .|.+.+|+ +++++++||+++|+||++||++|+.++|.+.++++++++ .+  +++++|++|.+.+.+.++.+.++|+.+
T Consensus        12 ~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~   89 (144)
T 1i5g_A           12 NVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISWDESAEDFKDYYAKMPWLAL   89 (144)
T ss_dssp             EEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHHHTTCSSEEC
T ss_pred             EEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHHHHhCCcccc
Confidence            48899999 999999999999999999999999999999999999985 33  899999999888889999999998888


Q ss_pred             ec
Q 018726          105 PF  106 (351)
Q Consensus       105 ~~  106 (351)
                      ++
T Consensus        90 ~~   91 (144)
T 1i5g_A           90 PF   91 (144)
T ss_dssp             CT
T ss_pred             cc
Confidence            87

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.8e-13  Score=107.09  Aligned_cols=87  Identities=16%  Similarity=0.315  Sum_probs=68.0

Q ss_pred             cCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++...+...- -.+++++|+||++||++|+.+.|.+.+++++++.....++.++.|+++..                  
T Consensus        11 ~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------   72 (133)
T 1x5d_A           11 ELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN------------------   72 (133)
T ss_dssp             ECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC------------------
T ss_pred             EcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC------------------
Confidence            44444444322 24789999999999999999999999999998621224588888888754                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                           ..++++|+|.++|+++++++ |+++.+
T Consensus        73 -----~~l~~~~~v~~~Pt~~~~~~-g~~~~~   98 (133)
T 1x5d_A           73 -----QVLASRYGIRGFPTIKIFQK-GESPVD   98 (133)
T ss_dssp             -----CHHHHHHTCCSSSEEEEEET-TEEEEE
T ss_pred             -----HHHHHhCCCCeeCeEEEEeC-CCceEE
Confidence                 57899999999999999966 876655

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.48  E-value=1.3e-13  Score=110.55  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHH---HHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~---l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      ..+++ +.+.+|+ +++++++||+++|+|||+||++|+.++|.+.+   +++++++.+  ++++.|+.|.+.+.+.++++
T Consensus        10 ~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~~~~~~~~   87 (142)
T 3eur_A           10 KALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELDEWKKHRN   87 (142)
T ss_dssp             BCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHHHHHHHGG
T ss_pred             ccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHHHHHHHHH
Confidence            44455 8899999 99999999999999999999999999999999   999998766  89999999988778888877


Q ss_pred             cCCc
Q 018726           98 CMPW  101 (351)
Q Consensus        98 ~~~~  101 (351)
                      .++.
T Consensus        88 ~~~~   91 (142)
T 3eur_A           88 DFAK   91 (142)
T ss_dssp             GSCT
T ss_pred             hccc
Confidence            6663

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.48  E-value=7.2e-14  Score=119.92  Aligned_cols=88  Identities=18%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             CCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCc
Q 018726          145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW  223 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~  223 (351)
                      ++..+ ++++..+.....++++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++..             
T Consensus        95 ~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~~~~-------------  157 (210)
T 3apq_A           95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD----GLLRIGAVNCGDD-------------  157 (210)
T ss_dssp             TCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEETTTC-------------
T ss_pred             CCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc----CceEEEEEECCcc-------------
Confidence            34444 56666665555678999999999999999999999999999986    5689999998864             


Q ss_pred             eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                                ..+++.|+|.++||++++ ++|+++.+
T Consensus       158 ----------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  183 (210)
T 3apq_A          158 ----------RMLCRMKGVNSYPSLFIF-RSGMAAVK  183 (210)
T ss_dssp             ----------HHHHHHTTCCSSSEEEEE-CTTSCCEE
T ss_pred             ----------HHHHHHcCCCcCCeEEEE-ECCCceeE
Confidence                      678999999999999999 99988665

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.47  E-value=2e-13  Score=109.70  Aligned_cols=71  Identities=17%  Similarity=0.374  Sum_probs=63.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+|||+||++|+.+.|.|++++++++    +++.++.|++|..                       ..++++|+
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~-----------------------~~~~~~~~   74 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITEV-----------------------PDFNKMYE   74 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTSSC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEccccC-----------------------HHHHHHcC
Confidence            47999999999999999999999999999986    5689999998864                       46788999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        75 i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           75 LYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             SCSSCEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-ECCcEEEE
Confidence            9999999999 68888764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.21  E-value=3.6e-15  Score=117.79  Aligned_cols=83  Identities=25%  Similarity=0.518  Sum_probs=68.7

Q ss_pred             CcceeecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .+.++++..+||++||+||++||++|+.+.|.+   .++.+.++    .++.++.|+++.+.                  
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~------------------   66 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE----ARFVVASVSVDTPE------------------   66 (130)
Confidence            566777778899999999999999999999999   88887775    45777777775432                  


Q ss_pred             chhhHHHHHHcCcCceeeEEEECC-CCce--Eec
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGP-DGKT--IST  260 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~-~G~v--~~~  260 (351)
                         ...+++.|++.++||++++|+ +|++  +.+
T Consensus        67 ---~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~   97 (130)
T 2lst_A           67 ---GQELARRYRVPGTPTFVFLVPKAGAWEEVGR   97 (130)
Confidence               467899999999999999996 5888  665

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.47  E-value=4.2e-13  Score=107.14  Aligned_cols=84  Identities=19%  Similarity=0.400  Sum_probs=68.1

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++++.+......+|++||+||++||++|+.+.|.|.+++++++. .+.++.++.|+++..                   
T Consensus        21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~vd~~~~-------------------   80 (140)
T 2dj1_A           21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD-NDPPIAVAKIDATSA-------------------   80 (140)
T ss_dssp             ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS-SSSCCEEEEECTTTC-------------------
T ss_pred             EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc-cCCceEEEEEeCccc-------------------
Confidence            556666654444689999999999999999999999999999974 223478888777653                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                          ..++++|+|.++|+++++ ++|++.
T Consensus        81 ----~~~~~~~~v~~~Pt~~~~-~~G~~~  104 (140)
T 2dj1_A           81 ----SMLASKFDVSGYPTIKIL-KKGQAV  104 (140)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ----HHHHHHCCCCccCeEEEE-ECCcEE
Confidence                688999999999999999 788843

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.1e-14  Score=111.50  Aligned_cols=84  Identities=19%  Similarity=0.312  Sum_probs=68.4

Q ss_pred             cCCCccee--ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeec
Q 018726          150 SRDHRKIT--VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       150 ~~~g~~~~--l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  227 (351)
                      .++...+.  +..-++++++|+||++||++|+.+.|.|++++++++.   .++.++.|+++..                 
T Consensus        11 ~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~-----------------   70 (137)
T 2dj0_A           11 YFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC---TGLNFGKVDVGRY-----------------   70 (137)
T ss_dssp             ECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS---SSCEEEECCTTTC-----------------
T ss_pred             EccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCccC-----------------
Confidence            44444443  3334567999999999999999999999999999974   5788888887764                 


Q ss_pred             cCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          228 YEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                            ..++++|++.      ++||++++ ++|+++.+
T Consensus        71 ------~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~  102 (137)
T 2dj0_A           71 ------TDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMR  102 (137)
T ss_dssp             ------HHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred             ------HHHHHHccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence                  5788999998      99999999 89998876

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.47  E-value=2.8e-13  Score=103.00  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=62.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++|+++|+||++||++|+.+.|.+.+++++++     ++.++.|++|..                       ..++++|+
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~~~~~~~   71 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQC-----------------------QGTAATNN   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-----CcEEEEEECccC-----------------------HHHHHhcC
Confidence            57999999999999999999999999998873     488888888864                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        72 v~~~Pt~~~~-~~G~~~~~   89 (107)
T 1gh2_A           72 ISATPTFQFF-RNKVRIDQ   89 (107)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCeEEEE
Confidence            9999999999 88988876

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.47  E-value=2.9e-13  Score=103.66  Aligned_cols=70  Identities=21%  Similarity=0.394  Sum_probs=62.9

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..+++.|++
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v   76 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDVDAV-----------------------AAVAEAAGI   76 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTT-----------------------HHHHHHHTC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCeEEEEEECCch-----------------------HHHHHHcCC
Confidence            7899999999999999999999999999886    4688999988864                       688999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus        77 ~~~Pt~~~~-~~G~~~~~   93 (112)
T 1ep7_A           77 TAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             CBSSEEEEE-ETTEEEEE
T ss_pred             CcccEEEEE-ECCeEEEE
Confidence            999998887 89998876

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.47  E-value=4.9e-13  Score=105.06  Aligned_cols=85  Identities=8%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcc-cCCceEEEEEeCCCCHHHHHhhhccCCceeec
Q 018726          150 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       150 ~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  227 (351)
                      .++++.+...-. .+++++|.||++||++|+.+.|.+.++++++... ...++.++.|+++..                 
T Consensus        19 ~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~-----------------   81 (127)
T 3h79_A           19 ELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY-----------------   81 (127)
T ss_dssp             ECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-----------------
T ss_pred             ECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-----------------
Confidence            566666654333 4799999999999999999999999999988531 235688998888864                 


Q ss_pred             cCchhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          228 YEDRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                            ..++++|+|.++||++++++.+++
T Consensus        82 ------~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 ------PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             ------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             ------HhHHHhcCCccCCEEEEEeCCCCC
Confidence                  689999999999999999665553

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.47  E-value=2.3e-13  Score=103.34  Aligned_cols=71  Identities=24%  Similarity=0.501  Sum_probs=64.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++.+                       ..+++.|+
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   69 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE----GKLLVAKLDVDEN-----------------------PKTAMRYR   69 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh----CceEEEEEECCCC-----------------------HhHHHhCC
Confidence            47899999999999999999999999999886    4689999998864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        70 v~~~Pt~~~~-~~g~~~~~   87 (109)
T 2yzu_A           70 VMSIPTVILF-KDGQPVEV   87 (109)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-eCCcEeee
Confidence            9999999999 89998876

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.47  E-value=3.1e-13  Score=109.73  Aligned_cols=79  Identities=24%  Similarity=0.434  Sum_probs=69.9

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCce
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL  102 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~  102 (351)
                      +++ |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.+.+.+.++...++||
T Consensus        16 p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~~~~~~~~   93 (152)
T 2lrt_A           16 IDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSADNLPWV   93 (152)
T ss_dssp             CCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHHHTTCSSE
T ss_pred             CCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHHhCCCce
Confidence            344 8899999 99999999999999999999999999999999999998876  8999999998877777777777876


Q ss_pred             eee
Q 018726          103 AVP  105 (351)
Q Consensus       103 ~~~  105 (351)
                      .+.
T Consensus        94 ~~~   96 (152)
T 2lrt_A           94 CVR   96 (152)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.47  E-value=2.5e-13  Score=102.20  Aligned_cols=70  Identities=17%  Similarity=0.491  Sum_probs=62.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.|.+.+++++++    . +.++.|++|..                       ..++++|+
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~-~~~~~v~~~~~-----------------------~~~~~~~~   66 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP----Q-VGFGKLNSDEN-----------------------PDIAARYG   66 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC----C-ceEEEEECCCC-----------------------HHHHHhCC
Confidence            57899999999999999999999999998885    3 88999988864                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        67 v~~~Pt~~~~-~~g~~~~~   84 (104)
T 2e0q_A           67 VMSLPTVIFF-KDGEPVDE   84 (104)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             ccccCEEEEE-ECCeEhhh
Confidence            9999999999 89998876

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.46  E-value=3.4e-13  Score=101.85  Aligned_cols=71  Identities=23%  Similarity=0.491  Sum_probs=63.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   69 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNTDEA-----------------------PGIATQYN   69 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhc----CceEEEEEcCcch-----------------------HHHHHhCC
Confidence            47899999999999999999999999999887    4588999988864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        70 v~~~Pt~~~~-~~g~~~~~   87 (105)
T 1fb6_A           70 IRSIPTVLFF-KNGERKES   87 (105)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCeEEEE
Confidence            9999999888 79998876

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.46  E-value=3e-13  Score=102.22  Aligned_cols=71  Identities=20%  Similarity=0.434  Sum_probs=63.2

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .++|+++|.||++||++|+.+.|.+.+++++++     ++.++.|++|..                       ..+++.|
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~~~~~~   69 (105)
T 3m9j_A           18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDDC-----------------------QDVASES   69 (105)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----TSEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----CeEEEEEEhhhh-----------------------HHHHHHc
Confidence            368999999999999999999999999999885     388888888764                       6889999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++|+++++ ++|+++.+
T Consensus        70 ~v~~~Pt~~~~-~~g~~~~~   88 (105)
T 3m9j_A           70 EVKSMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             TCCBSSEEEEE-ETTEEEEE
T ss_pred             CCCcCcEEEEE-ECCeEEEE
Confidence            99999999999 88988876

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=1.7e-13  Score=108.49  Aligned_cols=83  Identities=12%  Similarity=0.271  Sum_probs=65.3

Q ss_pred             cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .+++..+..... ++++++|+||++||++|+.+.|.|.+++++++.  ..++.++.|+++..                  
T Consensus        11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~vd~~~~------------------   70 (133)
T 2dj3_A           11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG--QKDLVIAKMDATAN------------------   70 (133)
T ss_dssp             ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTT--SSSEEEEEECTTTS------------------
T ss_pred             EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCCEEEEEecCCcC------------------
Confidence            556666655443 489999999999999999999999999999873  23577777776643                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                           ..++++|+|.++||+++++.+|++
T Consensus        71 -----~~~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           71 -----DITNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             -----CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred             -----HHHHhhcCCCcCCEEEEEeCCCcc
Confidence                 355678999999999999766654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.46  E-value=4.7e-13  Score=101.25  Aligned_cols=72  Identities=28%  Similarity=0.610  Sum_probs=63.9

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .++++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~   70 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDVDEC-----------------------EDIAMEY   70 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC----CCeEEEEEeccch-----------------------HHHHHHc
Confidence            468999999999999999999999999999886    5688999988864                       6789999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++|+++++ ++|+++.+
T Consensus        71 ~v~~~Pt~~~~-~~G~~~~~   89 (106)
T 1xwb_A           71 NISSMPTFVFL-KNGVKVEE   89 (106)
T ss_dssp             TCCSSSEEEEE-ETTEEEEE
T ss_pred             CCCcccEEEEE-cCCcEEEE
Confidence            99999998888 78988876

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.46  E-value=2.9e-13  Score=103.36  Aligned_cols=73  Identities=21%  Similarity=0.472  Sum_probs=63.0

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.+.++++++.. ...++.++.|+++..                       ..++++|++
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~l~~~~~v   76 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFP-GLAGVKIAEVDCTAE-----------------------RNICSKYSV   76 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCC-C-CCEEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhc-cCCceEEEEEecccc-----------------------HhHHHhcCC
Confidence            78999999999999999999999999888764 224788888888864                       678999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus        77 ~~~Pt~~~~-~~g~~~~~   93 (111)
T 3uvt_A           77 RGYPTLLLF-RGGKKVSE   93 (111)
T ss_dssp             CSSSEEEEE-ETTEEEEE
T ss_pred             CcccEEEEE-eCCcEEEe
Confidence            999999999 88888766

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.45  E-value=4.1e-13  Score=109.19  Aligned_cols=70  Identities=19%  Similarity=0.427  Sum_probs=62.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.|.++++++     +++.++.|+++..                       ..++++|+
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~~v~~~~vd~~~~-----------------------~~l~~~~~   82 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-----PQVSFVKLEAEGV-----------------------PEVSEKYE   82 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-----CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence            4899999999999999999999999999886     3588998988864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++|++++++ +|+++.+
T Consensus        83 v~~~Pt~~~~~-~G~~~~~  100 (153)
T 2wz9_A           83 ISSVPTFLFFK-NSQKIDR  100 (153)
T ss_dssp             CCSSSEEEEEE-TTEEEEE
T ss_pred             CCCCCEEEEEE-CCEEEEE
Confidence            99999999997 9998876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.45  E-value=7.8e-14  Score=113.01  Aligned_cols=61  Identities=20%  Similarity=0.408  Sum_probs=53.3

Q ss_pred             cceeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        25 ~~~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      .++....+|+ +++++++||+++|+||++||++|+.++|.+.++++++++.+  +.++.|++|.
T Consensus         6 ~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~   67 (151)
T 3raz_A            6 DELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDT   67 (151)
T ss_dssp             -CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESSC
T ss_pred             chhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCC
Confidence            4444447899 99999999999999999999999999999999999996665  8899999874

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.45  E-value=3.3e-13  Score=105.47  Aligned_cols=73  Identities=14%  Similarity=0.417  Sum_probs=62.4

Q ss_pred             ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       160 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      +.++|+++|+||++||++|+.+.|.+++++++++     ++.++.|+++..                      ...++++
T Consensus        34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~~~~~~vd~~~~----------------------~~~~~~~   86 (124)
T 1faa_A           34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKE   86 (124)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHH
T ss_pred             hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----CCEEEEEecCcc----------------------hHHHHHH
Confidence            3468999999999999999999999999998874     478888888743                      3688999


Q ss_pred             cCcCceeeEEEECCCCceEec
Q 018726          240 FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~v~~~  260 (351)
                      |++.++||++++ ++|+++.+
T Consensus        87 ~~v~~~Pt~~~~-~~G~~~~~  106 (124)
T 1faa_A           87 LGIRVVPTFKIL-KENSVVGE  106 (124)
T ss_dssp             HCCSSSSEEEEE-ETTEEEEE
T ss_pred             cCCCeeeEEEEE-eCCcEEEE
Confidence            999999997666 89998876

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.45  E-value=8.5e-14  Score=110.56  Aligned_cols=75  Identities=24%  Similarity=0.446  Sum_probs=59.8

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .+++.+||+++|+||++||++|+.+.|.|+++++++      ++.++.|+++..                       ..+
T Consensus        34 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~------~v~~~~vd~~~~-----------------------~~l   84 (133)
T 3cxg_A           34 VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY------YVTLVDIDVDIH-----------------------PKL   84 (133)
T ss_dssp             HHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE------ECEEEEEETTTC-----------------------HHH
T ss_pred             HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc------CEEEEEEeccch-----------------------HHH
Confidence            355667899999999999999999999998876544      366777776653                       678


Q ss_pred             HHHcCcCceeeEEEE-CCCCc--eEec
Q 018726          237 CRIFNIKGIPALVLI-GPDGK--TIST  260 (351)
Q Consensus       237 ~~~~~i~~~P~~~li-d~~G~--v~~~  260 (351)
                      +++|+|.++||++++ |++|+  ++.+
T Consensus        85 ~~~~~v~~~Pt~~~~~~~~g~g~~~~~  111 (133)
T 3cxg_A           85 NDQHNIKALPTFEFYFNLNNEWVLVHT  111 (133)
T ss_dssp             HHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred             HHhcCCCCCCEEEEEEecCCCeEEEEE
Confidence            999999999999999 44666  7766

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.45  E-value=3.1e-13  Score=111.36  Aligned_cols=79  Identities=39%  Similarity=0.899  Sum_probs=71.1

Q ss_pred             eeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        27 ~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      .|.+.+|.+++++++||+++|+||++||++|+.++|.+.++++++++.. ++.+++|++|.+.+.+.++++.++|+.+++
T Consensus        33 ~l~~~~g~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3s9f_A           33 KLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDDFNAYYAKMPWLSIPF  111 (165)
T ss_dssp             CEEETTEEECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHTTCSSEECCT
T ss_pred             eeecCCCcccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCC-CeEEEEEecCCCHHHHHHHHHhCCCccccc
Confidence            4777788888999999999999999999999999999999999998621 289999999998888999999999988888

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.44  E-value=3.7e-13  Score=104.56  Aligned_cols=71  Identities=28%  Similarity=0.566  Sum_probs=63.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|.||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   81 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERA----TDLTVAKLDVDTN-----------------------PETARNFQ   81 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence            47899999999999999999999999999886    4689999998864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        82 i~~~Pt~~~~-~~g~~~~~   99 (121)
T 2i1u_A           82 VVSIPTLILF-KDGQPVKR   99 (121)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-ECCEEEEE
Confidence            9999999998 69998776

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.44  E-value=8.8e-14  Score=121.97  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=57.5

Q ss_pred             eeCC-CC---cccccC-CCCCeEEEEEe-CCCChhhh-hhhHHHHHHHHHHhhcCCcE-EEEEEEecCChhhHHHHHhcC
Q 018726           28 LLSR-QG---KVPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~-~g---~~~~~~-~~gk~v~v~F~-a~wC~~C~-~~~p~~~~l~~~~~~~~~~~-~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      |.+. +|   .+++++ ++||+++|.|| ++||++|+ ..+|.+.++++++++.|  + +++.|+.|. .....++.+..
T Consensus        14 l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~-~~~~~~~~~~~   90 (241)
T 1nm3_A           14 FRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVND-TFVMNAWKEDE   90 (241)
T ss_dssp             EEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC-HHHHHHHHHHT
T ss_pred             EEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCC-HHHHHHHHHhc
Confidence            5564 56   488999 89999999999 99999999 99999999999998877  8 899999885 33455555544


Q ss_pred             C
Q 018726          100 P  100 (351)
Q Consensus       100 ~  100 (351)
                      +
T Consensus        91 ~   91 (241)
T 1nm3_A           91 K   91 (241)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.44  E-value=6.5e-13  Score=102.42  Aligned_cols=70  Identities=23%  Similarity=0.524  Sum_probs=62.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +||+++|+||++||++|+.+.|.|.+++++++    . +.++.|++|..                       ..++++|+
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~----~-v~~~~vd~~~~-----------------------~~l~~~~~   80 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP----D-VRFVKCDVDES-----------------------PDIAKECE   80 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-CEEEEEECCCC-----------------------HHHHHHCC
Confidence            57999999999999999999999999999875    3 88999988864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        81 v~~~Pt~~~~-~~G~~~~~   98 (114)
T 2oe3_A           81 VTAMPTFVLG-KDGQLIGK   98 (114)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCeEEEE
Confidence            9999999888 89998876

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=3.9e-13  Score=121.58  Aligned_cols=169  Identities=12%  Similarity=0.154  Sum_probs=94.7

Q ss_pred             eeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceee
Q 018726           28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAV  104 (351)
Q Consensus        28 l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~  104 (351)
                      ++..+++ +... ...+++++|+|||+||++|+.++|.+.++++.+++.   +.++.|++|.+ ...+++.+++..+|++
T Consensus        19 vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~~~~l~~~~~I~~~Pt~   95 (298)
T 3ed3_A           19 ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKNKALCAKYDVNGFPTL   95 (298)
T ss_dssp             CEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTTTHHHHHHTTCCBSSEE
T ss_pred             eEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCccCHHHHHhCCCCccceE
Confidence            4455554 3322 235899999999999999999999999999999765   78889998864 3457778888888888


Q ss_pred             ec--ChHHHHHHhhhhhhhHH----hhhccccccccchHHhhhccCCCcEecCC-Cccee-ecccCCcEEEEEEecCCCh
Q 018726          105 PF--DETLHKKLRIRKRREEL----KAIDDSKRQGGKLEQLLAIEGRDYVLSRD-HRKIT-VSELAGKTIGLYFGAHWCP  176 (351)
Q Consensus       105 ~~--~~~~~~~l~~~~~~~~l----~~~~~~~~~~~~~~~~~g~~~pdf~~~~~-g~~~~-l~~~~gk~vll~F~a~~C~  176 (351)
                      .+  +|+......+.......    .....+......+...+....+.....+. .+.+. +-.-..+++++.|...   
T Consensus        96 ~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~---  172 (298)
T 3ed3_A           96 MVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ---  172 (298)
T ss_dssp             EEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESS---
T ss_pred             EEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCC---
Confidence            87  55421111110000000    00001111222223333333333332221 11111 1111246777777332   


Q ss_pred             hhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          177 PCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       177 ~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                        ....+.+.+++..|.    +.+.+..+..+
T Consensus       173 --~~~~~~f~~~A~~~~----~~~~F~~v~~~  198 (298)
T 3ed3_A          173 --DKISPVYKSIALDWL----GKFDFYSISNK  198 (298)
T ss_dssp             --SSCCHHHHHHHHHTB----TTEEEEEEEGG
T ss_pred             --CcchHHHHHHHHHhh----cCcEEEEEcch
Confidence              123467888888887    57788777754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.43  E-value=2.6e-13  Score=122.05  Aligned_cols=83  Identities=16%  Similarity=0.338  Sum_probs=69.4

Q ss_pred             cCCCccee--ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeec
Q 018726          150 SRDHRKIT--VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       150 ~~~g~~~~--l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  227 (351)
                      .++...+.  +...++|+|+|+||++||++|+.+.|.+.+++++++    +++.++.|++|..                 
T Consensus        11 ~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------   69 (287)
T 3qou_A           11 NINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDCDAE-----------------   69 (287)
T ss_dssp             ECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT----SSSEEEEEETTTC-----------------
T ss_pred             ECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEEeCccC-----------------
Confidence            44444443  223358999999999999999999999999999997    5689999998864                 


Q ss_pred             cCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                            ..+++.|+|.++||++++ ++|+++.+
T Consensus        70 ------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   95 (287)
T 3qou_A           70 ------QMIAAQFGLRAIPTVYLF-QNGQPVDG   95 (287)
T ss_dssp             ------HHHHHTTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ------HHHHHHcCCCCCCeEEEE-ECCEEEEE
Confidence                  689999999999999999 79998876

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.43  E-value=5.4e-13  Score=104.70  Aligned_cols=71  Identities=17%  Similarity=0.456  Sum_probs=62.9

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      -++++++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++|
T Consensus        35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~   86 (125)
T 1r26_A           35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADNN-----------------------SEIVSKC   86 (125)
T ss_dssp             HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHT
T ss_pred             ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEECCCC-----------------------HHHHHHc
Confidence            368999999999999999999999999998873     488999988864                       6789999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++||++++ ++|+++.+
T Consensus        87 ~v~~~Pt~~i~-~~G~~~~~  105 (125)
T 1r26_A           87 RVLQLPTFIIA-RSGKMLGH  105 (125)
T ss_dssp             TCCSSSEEEEE-ETTEEEEE
T ss_pred             CCCcccEEEEE-eCCeEEEE
Confidence            99999998888 89998876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.43  E-value=2.2e-13  Score=106.13  Aligned_cols=69  Identities=20%  Similarity=0.339  Sum_probs=61.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   72 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIK----GKVRAGKVDCQAY-----------------------PQTCQKAG   72 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeCcCC-----------------------HHHHHHcC
Confidence            47899999999999999999999999999987    4688999988864                       57899999


Q ss_pred             cCceeeEEEECCCCce
Q 018726          242 IKGIPALVLIGPDGKT  257 (351)
Q Consensus       242 i~~~P~~~lid~~G~v  257 (351)
                      +.++||+++++++|++
T Consensus        73 v~~~Pt~~~~~~~~~~   88 (122)
T 3aps_A           73 IKAYPSVKLYQYERAK   88 (122)
T ss_dssp             CCSSSEEEEEEEEGGG
T ss_pred             CCccceEEEEeCCCcc
Confidence            9999999999766653

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.43  E-value=2e-13  Score=110.44  Aligned_cols=60  Identities=30%  Similarity=0.686  Sum_probs=55.9

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  +.++.|++|.+.
T Consensus        11 l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~   71 (151)
T 2f9s_A           11 LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESK   71 (151)
T ss_dssp             EECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCH
T ss_pred             eEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCH
Confidence            8889999 99999999999999999999999999999999999998765  899999998764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.43  E-value=3.7e-13  Score=104.34  Aligned_cols=88  Identities=11%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.|||+||++|+.+.|.|++++++|+     ++.++.|++|..                          +++|+|
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-----~v~f~kvd~d~~--------------------------~~~~~v   71 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-----ETKFVKAIVNSC--------------------------IQHYHD   71 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-----TSEEEEEEGGGT--------------------------STTCCG
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----CCEEEEEEhHHh--------------------------HHHCCC
Confidence            4599999999999999999999999999885     477877776631                          478999


Q ss_pred             CceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHH
Q 018726          243 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK  289 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~  289 (351)
                      .++||++++ ++|+++.+       ..|........-..++|+..+.
T Consensus        72 ~~~PT~~~f-k~G~~v~~-------~~G~~~~gg~~~~~~~le~~L~  110 (118)
T 3evi_A           72 NCLPTIFVY-KNGQIEAK-------FIGIIECGGINLKLEELEWKLA  110 (118)
T ss_dssp             GGCSEEEEE-ETTEEEEE-------EESTTTTTCSSCCHHHHHHHHH
T ss_pred             CCCCEEEEE-ECCEEEEE-------EeChhhhCCCCCCHHHHHHHHH
Confidence            999999999 89998877       5565544322233444444443

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.43  E-value=4.9e-13  Score=103.90  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             cCCCcceeec-ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcc-cCCceEEEEEeCCCCHHHHHhhhccCCceeec
Q 018726          150 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       150 ~~~g~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  227 (351)
                      .++++.+... ..++++++|+||++||++|+.+.|.|.+++++++.. ...++.++.|+++..                 
T Consensus        11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------   73 (121)
T 2djj_A           11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-----------------   73 (121)
T ss_dssp             ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-----------------
T ss_pred             EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc-----------------
Confidence            5566666544 246899999999999999999999999999999730 013788888888753                 


Q ss_pred             cCchhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          228 YEDRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                             .+++  ++.++||+++++++|++
T Consensus        74 -------~~~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           74 -------DVPD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             -------CCSS--CCSSSSEEEEECSSCTT
T ss_pred             -------cccc--ccCcCCeEEEEeCcCCC
Confidence                   1223  89999999999877774

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.43  E-value=8.7e-13  Score=102.69  Aligned_cols=70  Identities=20%  Similarity=0.518  Sum_probs=62.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+||++||++|+.+.|.|.+++++++    . +.++.|++|..                       ..++++|+
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~-~~~~~vd~~~~-----------------------~~~~~~~~   84 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP----N-AVFLKVDVDEL-----------------------KPIAEQFS   84 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-cEEEEEECCCC-----------------------HHHHHHcC
Confidence            58999999999999999999999999998875    3 88999988864                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        85 v~~~Pt~~~~-~~G~~~~~  102 (122)
T 2vlu_A           85 VEAMPTFLFM-KEGDVKDR  102 (122)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999998888 89998876

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.42  E-value=2.4e-13  Score=107.06  Aligned_cols=95  Identities=17%  Similarity=0.362  Sum_probs=71.2

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +...+++ +.....+||+++|+||++||++|+.+.|.+.++++++++.   +.++.|++|.+. .+.+.+++..+|++.+
T Consensus        27 ~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~  102 (128)
T 3ul3_B           27 LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKNE-SLARKFSVKSLPTIIL  102 (128)
T ss_dssp             CCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGCH-HHHHHTTCCSSSEEEE
T ss_pred             cccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHHcCCCCcCEEEE
Confidence            4456666 7777889999999999999999999999999999999754   667777766544 4666777777888877


Q ss_pred             --ChHHHHHHhhhhhhhHHhhh
Q 018726          107 --DETLHKKLRIRKRREELKAI  126 (351)
Q Consensus       107 --~~~~~~~l~~~~~~~~l~~~  126 (351)
                        +|+...++.|....+++.+.
T Consensus       103 ~~~G~~~~~~~G~~~~~~l~~~  124 (128)
T 3ul3_B          103 LKNKTMLARKDHFVSSNDLIAL  124 (128)
T ss_dssp             EETTEEEEEESSCCCHHHHHHH
T ss_pred             EECCEEEEEecCCCCHHHHHHH
Confidence              67655555554444444433

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.42  E-value=6.9e-14  Score=106.28  Aligned_cols=74  Identities=22%  Similarity=0.419  Sum_probs=55.5

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLR  115 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  115 (351)
                      ++..+|+|+|+|||+||++|+.+.|.+.++++.+.+    +.++.|++|... .+++.+++..+||+.+  +|+...++.
T Consensus        16 ~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~~-~l~~~~~V~~~PT~~~~~~G~~v~~~~   90 (105)
T 3zzx_A           16 NEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDECE-DIAQDNQIACMPTFLFMKNGQKLDSLS   90 (105)
T ss_dssp             HHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEEEEE
T ss_pred             HhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC----eEEEEEecccCH-HHHHHcCCCeecEEEEEECCEEEEEEe
Confidence            344689999999999999999999999999988753    344444444333 4677777777788776  777666666


Q ss_pred             h
Q 018726          116 I  116 (351)
Q Consensus       116 ~  116 (351)
                      |
T Consensus        91 G   91 (105)
T 3zzx_A           91 G   91 (105)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.42  E-value=1.3e-12  Score=104.47  Aligned_cols=83  Identities=25%  Similarity=0.457  Sum_probs=62.3

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++++.+......++.++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                   
T Consensus        37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-------------------   93 (140)
T 1v98_A           37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA----GRLKVVKVNVDEH-------------------   93 (140)
T ss_dssp             ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-------------------
T ss_pred             cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEECCCC-------------------
Confidence            44455554433333339999999999999999999999999987    4689999998864                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                          ..+++.|++.++||++++ ++|+++.+
T Consensus        94 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~  119 (140)
T 1v98_A           94 ----PGLAARYGVRSVPTLVLF-RRGAPVAT  119 (140)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----HHHHHHCCCCccCEEEEE-eCCcEEEE
Confidence                578999999999999999 89998876

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.42  E-value=1e-12  Score=100.85  Aligned_cols=70  Identities=20%  Similarity=0.412  Sum_probs=61.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                       ..++++|+
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----~v~~~~vd~~~~-----------------------~~~~~~~~   76 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----KMVFIKVDVDEV-----------------------SEVTEKEN   76 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTT-----------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----CCEEEEEECCCC-----------------------HHHHHHcC
Confidence            58999999999999999999999999998874     488899988864                       57899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        77 v~~~Pt~~~~-~~G~~~~~   94 (112)
T 1syr_A           77 ITSMPTFKVY-KNGSSVDT   94 (112)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCcEEEE
Confidence            9999998887 79998776

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.42  E-value=4.8e-13  Score=106.98  Aligned_cols=75  Identities=20%  Similarity=0.392  Sum_probs=66.6

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHH---HHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~---l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      +++ +.+.+|+ +++++++||+++|+||++||++|+.++|.+.+   +++++++.+  +.++.|++|.+.+.+.++.+..
T Consensus         8 p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~   85 (142)
T 3ewl_A            8 ADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWATKAVYM   85 (142)
T ss_dssp             CCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHHHHHHTTS
T ss_pred             CCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHHHHHHHHc
Confidence            344 8899999 99999999999999999999999999999998   999998776  8999999998887788887766


Q ss_pred             Cc
Q 018726          100 PW  101 (351)
Q Consensus       100 ~~  101 (351)
                      ++
T Consensus        86 ~~   87 (142)
T 3ewl_A           86 PQ   87 (142)
T ss_dssp             CT
T ss_pred             CC
Confidence            53

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.42  E-value=4.8e-13  Score=102.40  Aligned_cols=70  Identities=20%  Similarity=0.402  Sum_probs=61.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                       ..++++|+
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~-----------------------~~l~~~~~   69 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-----QVAISSVDSEAR-----------------------PELMKELG   69 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-----TSCEEEEEGGGC-----------------------HHHHHHTT
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-----CcEEEEEcCcCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999887653     577888887753                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        70 v~~~Pt~~~~-~~G~~v~~   87 (110)
T 2l6c_A           70 FERVPTLVFI-RDGKVAKV   87 (110)
T ss_dssp             CCSSCEEEEE-ESSSEEEE
T ss_pred             CcccCEEEEE-ECCEEEEE
Confidence            9999999999 99999877

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.42  E-value=2.4e-13  Score=109.02  Aligned_cols=80  Identities=16%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--CC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MP  100 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~  100 (351)
                      +++ + +.+|+ +++++++||+++|+||++||++|+.++|.+.++++++++.+  ++++.|++|.+.+.+.++++.  ++
T Consensus        14 P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~   90 (143)
T 4fo5_A           14 PRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETVKIDKLD   90 (143)
T ss_dssp             CCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHHHHHHHTCC
T ss_pred             CceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHHHHHHhCCC
Confidence            444 5 88999 99999999999999999999999999999999999998766  999999999887777777664  44


Q ss_pred             ceeeecC
Q 018726          101 WLAVPFD  107 (351)
Q Consensus       101 ~~~~~~~  107 (351)
                      ||.+..+
T Consensus        91 ~~~~~~d   97 (143)
T 4fo5_A           91 LSTQFHE   97 (143)
T ss_dssp             GGGEEEC
T ss_pred             Cceeeec
Confidence            5333343

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.42  E-value=2.9e-13  Score=111.00  Aligned_cols=67  Identities=27%  Similarity=0.516  Sum_probs=60.5

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~   96 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  +.++.|++|.+.+.+.++.
T Consensus        19 l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~~~   86 (165)
T 3or5_A           19 GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNYM   86 (165)
T ss_dssp             EECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHHHH
T ss_pred             eeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHH
Confidence            8899999 99999999999999999999999999999999999998776  8999999998766655553

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.42  E-value=5.9e-13  Score=103.29  Aligned_cols=71  Identities=23%  Similarity=0.439  Sum_probs=61.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+||++||++|+.+.|.|.++++++     .++.++.|+++..                       ..++++|+
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-----~~v~~~~vd~~~~-----------------------~~~~~~~~   73 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-----KDVTFIKVDVDKN-----------------------GNAADAYG   73 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-----CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence            4799999999999999999999999998887     3578888988864                       67899999


Q ss_pred             cCceeeEEEECC---CCceEec
Q 018726          242 IKGIPALVLIGP---DGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~---~G~v~~~  260 (351)
                      +.++|++++++.   +|+++.+
T Consensus        74 i~~~Pt~~~~~~~~~~G~~~~~   95 (118)
T 2f51_A           74 VSSIPALFFVKKEGNEIKTLDQ   95 (118)
T ss_dssp             CCSSSEEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCcceEEEe
Confidence            999999999955   3777766

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.42  E-value=3.7e-13  Score=109.08  Aligned_cols=66  Identities=24%  Similarity=0.453  Sum_probs=58.8

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~   95 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.+.+.+.++
T Consensus        14 l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~   80 (152)
T 2lrn_A           14 GIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKA   80 (152)
T ss_dssp             EECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHH
T ss_pred             eEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHH
Confidence            8889999 99999999999999999999999999999999999998776  899999999765444443

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.42  E-value=4.6e-13  Score=104.38  Aligned_cols=72  Identities=21%  Similarity=0.475  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++|+++|+||++||++|+.+.|.|++++++++.   .++.++.|++|..                       ..+++.|+
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~~~~~~~   85 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG---DKVGFYKVDVDEQ-----------------------SQIAQEVG   85 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHH---HHSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcC---CcEEEEEEECcCC-----------------------HHHHHHcC
Confidence            578999999999999999999999999988874   4589999998864                       67899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus        86 v~~~Pt~~~~-~~G~~~~~  103 (121)
T 2j23_A           86 IRAMPTFVFF-KNGQKIDT  103 (121)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCeEEee
Confidence            9999999999 69998876

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.41  E-value=1.8e-13  Score=107.09  Aligned_cols=83  Identities=25%  Similarity=0.471  Sum_probs=63.2

Q ss_pred             cCCCcceeec-ccCCcEEEEEEecCCCh--------------hhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018726          150 SRDHRKITVS-ELAGKTIGLYFGAHWCP--------------PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  214 (351)
Q Consensus       150 ~~~g~~~~l~-~~~gk~vll~F~a~~C~--------------~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  214 (351)
                      .+++..+... .-+||+++|+||++||+              +|+.+.|.+++++++++    +++.++.|++|..    
T Consensus         7 ~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~----~~~~~~~vd~d~~----   78 (123)
T 1oaz_A            7 HLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN----   78 (123)
T ss_dssp             ECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------CEEEEEETTSC----
T ss_pred             ecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc----CCeEEEEEECCCC----
Confidence            3444444322 22579999999999999              99999999999998886    4688999988864    


Q ss_pred             HhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          215 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                                         ..++++|+|.++||++++ ++|+++.+
T Consensus        79 -------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  104 (123)
T 1oaz_A           79 -------------------PGTAPKYGIRGIPTLLLF-KNGEVAAT  104 (123)
T ss_dssp             -------------------TTTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred             -------------------HHHHHHcCCCccCEEEEE-ECCEEEEE
Confidence                               578899999999999999 99999876

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.41  E-value=4.4e-13  Score=110.70  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=61.8

Q ss_pred             CcceeecccCCcEEEEEEecCCChhhHHhHHH---HHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          153 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQ---LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       153 g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~---l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .+.+..+..+||+|+|+|||+||++|+.+.+.   ..++.+.++    .++.++.|+.|...+ ....+.          
T Consensus        29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~----~~fv~ikVD~de~~~-l~~~y~----------   93 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN----EAFVSIKVDREERPD-IDNIYM----------   93 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH----HHCEEEEEETTTCHH-HHHHHH----------
T ss_pred             HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH----hcCceeeeCCcccCc-HHHHHH----------
Confidence            44566666679999999999999999999883   245666665    456667776664421 111110          


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                          ..+...+|+.++|++++++++|++++.
T Consensus        94 ----~~~q~~~gv~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           94 ----TVCQIILGRGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             ----HHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred             ----HHHHHHcCCCCCcceeeECCCCCceee
Confidence                111222499999999999999999986

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.41  E-value=8.5e-13  Score=114.21  Aligned_cols=83  Identities=25%  Similarity=0.471  Sum_probs=69.5

Q ss_pred             cCCCcceeec-ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++.+.+... .-++|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                  
T Consensus        16 ~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~------------------   73 (222)
T 3dxb_A           16 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN------------------   73 (222)
T ss_dssp             ECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC------------------
T ss_pred             eCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCCC------------------
Confidence            5566666432 2257999999999999999999999999999997    4589999998864                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                           ..++++|+|.++||++++ ++|+++.+
T Consensus        74 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~~   99 (222)
T 3dxb_A           74 -----PGTAPKYGIRGIPTLLLF-KNGEVAAT   99 (222)
T ss_dssp             -----TTTGGGGTCCSBSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHHcCCCcCCEEEEE-ECCeEEEE
Confidence                 567899999999999999 68988876

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.41  E-value=8.9e-13  Score=122.05  Aligned_cols=161  Identities=7%  Similarity=0.069  Sum_probs=103.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHH-------HHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQ-------LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLH  111 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~-------~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~  111 (351)
                      ++++++|+||||||+ |+.++|.       ++++++.+++.+  +.++.|+++.+. .+++.+++..+|++.+  +|. .
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~-~  101 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKEA-KLAKKLGFDEEGSLYVLKGDR-T  101 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTTH-HHHHHHTCCSTTEEEEEETTE-E
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCCH-HHHHhcCCCccceEEEEECCc-E
Confidence            689999999999999 9999999       899999987654  455555544433 4677778788888876  555 3


Q ss_pred             HHHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCC-ccee-ecccCCcEEEEEEecCCChhhHHhHHHHHHHH
Q 018726          112 KKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH-RKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVY  189 (351)
Q Consensus       112 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g-~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~  189 (351)
                      .++.|....+.+..++.....            |... .++. ..+. +-....+.++|.|+++||..   ..+.+.+++
T Consensus       102 ~~~~G~~~~~~l~~~i~~~~~------------~~~~-~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~---~~~~~~~~A  165 (350)
T 1sji_A          102 IEFDGEFAADVLVEFLLDLIE------------DPVE-IINSKLEVQAFERIEDQIKLIGFFKSEESE---YYKAFEEAA  165 (350)
T ss_dssp             EEECSCCCHHHHHHHHHTTSS------------CSEE-ECCSHHHHHHHHHCCSSCEEEEECSCTTSH---HHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHhcC------------Ccce-eccchHHHHHHhccCCCcEEEEEECCCCcH---HHHHHHHHH
Confidence            345554444444444332211            1111 1111 1111 00012356788899998654   456788888


Q ss_pred             HHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECC
Q 018726          190 NELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP  253 (351)
Q Consensus       190 ~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~  253 (351)
                      +.++    .++.+..+  .                        +..+++.|++. .|+++++.+
T Consensus       166 ~~~~----~~~~f~~~--~------------------------~~~~~~~~~v~-~p~i~~~~~  198 (350)
T 1sji_A          166 EHFQ----PYIKFFAT--F------------------------DKGVAKKLSLK-MNEVDFYEP  198 (350)
T ss_dssp             HHTT----TTSEEEEE--C------------------------CHHHHHHHTCC-TTCEEEECT
T ss_pred             Hhhc----cCcEEEEE--C------------------------CHHHHHHcCCC-CCcEEEEeC
Confidence            8886    45555544  1                        25688999999 999999965

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.41  E-value=1.6e-12  Score=104.15  Aligned_cols=78  Identities=47%  Similarity=1.002  Sum_probs=69.6

Q ss_pred             eeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhh-cCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726           27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        27 ~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (351)
                      .|.+.+|.+++++++||+++|.||++||++|+.++|.+.++++++++ .+  +++++|++|.+.+.+.++++.++|+.++
T Consensus        13 ~l~~~~g~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~i~~d~~~~~~~~~~~~~~~~~~~   90 (144)
T 1o73_A           13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWDENESDFHDYYGKMPWLALP   90 (144)
T ss_dssp             CBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred             EeecCCCcCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHHHHhCCceEee
Confidence            47777887889999999999999999999999999999999999983 33  8999999998887889999989888888


Q ss_pred             c
Q 018726          106 F  106 (351)
Q Consensus       106 ~  106 (351)
                      +
T Consensus        91 ~   91 (144)
T 1o73_A           91 F   91 (144)
T ss_dssp             T
T ss_pred             c
Confidence            7

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.41  E-value=2.9e-13  Score=113.97  Aligned_cols=78  Identities=18%  Similarity=0.301  Sum_probs=66.1

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHH
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH   95 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~   95 (351)
                      +++ |.+.+|+ +++++++||+|+|+||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++
T Consensus        27 p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~e~~~~~~~~~~  104 (187)
T 3dwv_A           27 FDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQEPGNEEEIKEF  104 (187)
T ss_dssp             GGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSCSSSBTTHHHHS
T ss_pred             CCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCCCCCCHHHHHHH
Confidence            344 8899999 99999999999999999999999999999999999999887  8999999983       45567777


Q ss_pred             Hh---cCCceee
Q 018726           96 FK---CMPWLAV  104 (351)
Q Consensus        96 ~~---~~~~~~~  104 (351)
                      .+   ..++|.+
T Consensus       105 ~~~~~~~~~p~~  116 (187)
T 3dwv_A          105 VCTKFKAEFPIM  116 (187)
T ss_dssp             CCBCCCCSSCBB
T ss_pred             HHhccCCCCcee
Confidence            66   3345544

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.41  E-value=1.4e-12  Score=98.27  Aligned_cols=71  Identities=27%  Similarity=0.603  Sum_probs=62.2

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .++++++|.||++||++|+.+.|.+.+++++++     ++.++.|+++..                       ..+++.|
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~-----------------------~~~~~~~   68 (104)
T 2vim_A           17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----EVEFAKVDVDQN-----------------------EEAAAKY   68 (104)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----CCEEEEEeccCC-----------------------HHHHHHc
Confidence            368999999999999999999999999988773     588988988864                       5789999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++|+++++ ++|+++.+
T Consensus        69 ~v~~~Pt~~~~-~~g~~~~~   87 (104)
T 2vim_A           69 SVTAMPTFVFI-KDGKEVDR   87 (104)
T ss_dssp             TCCSSSEEEEE-ETTEEEEE
T ss_pred             CCccccEEEEE-eCCcEEEE
Confidence            99999998888 58988876

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.40  E-value=7.6e-13  Score=102.30  Aligned_cols=72  Identities=24%  Similarity=0.509  Sum_probs=61.5

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ++.++|+++|+||++||++|+.+.|.+.++++++      ++.++.|++|..                       ..+++
T Consensus        29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~------~~~~~~vd~~~~-----------------------~~~~~   79 (117)
T 2xc2_A           29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY------DAIFVKVDVDKL-----------------------EETAR   79 (117)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS------SSEEEEEETTTS-----------------------HHHHH
T ss_pred             HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc------CcEEEEEECCcc-----------------------HHHHH
Confidence            3446899999999999999999999999887655      467888888754                       67899


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|++.++||++++ ++|+++.+
T Consensus        80 ~~~v~~~Pt~~~~-~~G~~~~~  100 (117)
T 2xc2_A           80 KYNISAMPTFIAI-KNGEKVGD  100 (117)
T ss_dssp             HTTCCSSSEEEEE-ETTEEEEE
T ss_pred             HcCCCccceEEEE-eCCcEEEE
Confidence            9999999998888 89998876

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.40  E-value=6.3e-13  Score=111.12  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhc
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKC   98 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~   98 (351)
                      |.+.+|+ +++++++||+++|+|||+||++|+.++|.+.+++++|++.+  ++++.|++|.       +.+.+.++.+.
T Consensus        23 l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           23 VKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEPRPSKEVESFARK   99 (180)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             EecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCCCCHHHHHHHHHH
Confidence            8899999 99999999999999999999999999999999999998877  8999999875       45556666554

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.40  E-value=1e-12  Score=105.74  Aligned_cols=78  Identities=45%  Similarity=0.971  Sum_probs=69.5

Q ss_pred             eeeCCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhh-cCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726           27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        27 ~l~~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (351)
                      .|.+.+|.+++++++||+++|+||++||++|+.++|.+.++++++++ .+  +++++|++|.+.+.+.++.+.++|+.++
T Consensus        13 ~l~~~~g~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~~   90 (146)
T 1o8x_A           13 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWDEEEDGFAGYFAKMPWLAVP   90 (146)
T ss_dssp             EEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHHHHHTTCSSEECC
T ss_pred             EEEcCCCCCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCC--eEEEEEeCCCCHHHHHHHHHHCCceeec
Confidence            47777777888899999999999999999999999999999999984 33  8999999998888899999999888887


Q ss_pred             c
Q 018726          106 F  106 (351)
Q Consensus       106 ~  106 (351)
                      +
T Consensus        91 ~   91 (146)
T 1o8x_A           91 F   91 (146)
T ss_dssp             G
T ss_pred             c
Confidence            7

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.40  E-value=1.4e-13  Score=112.46  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             cCcce-eeC-CCCc-ccccCCCCCeEEEEEeCCCChhhhh-hhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           23 EGVEF-LLS-RQGK-VPLSSCGGKTICLFFSANWCRPCKT-FTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        23 ~~~~~-l~~-~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~-~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +.+++ +.+ .+|+ +++++++||+++|+||++||++|+. ++|.+.++++++++.+  +.++.|++|
T Consensus         8 ~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~   73 (160)
T 3lor_A            8 PLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSV   73 (160)
T ss_dssp             CBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECC
T ss_pred             cCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEecc
Confidence            33444 566 7889 9999999999999999999999999 5999999999998776  889999974

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.40  E-value=3.6e-13  Score=108.23  Aligned_cols=68  Identities=21%  Similarity=0.398  Sum_probs=59.9

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  +.++.|++|.+.+.+.++.+
T Consensus        16 l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~   84 (148)
T 3hcz_A           16 MTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFIR   84 (148)
T ss_dssp             CBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHHHHHH
T ss_pred             EecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHHHHHH
Confidence            7889999 99999999999999999999999999999999999998876  89999999976654444433

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.39  E-value=7.4e-13  Score=110.83  Aligned_cols=69  Identities=20%  Similarity=0.341  Sum_probs=60.9

Q ss_pred             eeCC--CCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcE------EEEEEEecC-ChhhHHHHHh
Q 018726           28 LLSR--QGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL------EVIFISFDH-DENGFEEHFK   97 (351)
Q Consensus        28 l~~~--~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~------~iv~i~~d~-~~~~~~~~~~   97 (351)
                      +.+.  +|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  +      +++.|++|. +.+.+.++.+
T Consensus        42 l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~~~~~~~~~~~~  119 (183)
T 3lwa_A           42 GDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRDYSRDIAQDFVT  119 (183)
T ss_dssp             EEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSCCCHHHHHHHHH
T ss_pred             ccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCCCCHHHHHHHHH
Confidence            7888  999 99999999999999999999999999999999999998876  6      899999988 5666777655


Q ss_pred             c
Q 018726           98 C   98 (351)
Q Consensus        98 ~   98 (351)
                      .
T Consensus       120 ~  120 (183)
T 3lwa_A          120 D  120 (183)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.39  E-value=1e-12  Score=101.83  Aligned_cols=75  Identities=24%  Similarity=0.459  Sum_probs=60.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .|++++|+||++||++|+.+.|.|.+++++++.      .++.++++...+                 .+....++++|+
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~------~v~~~~~~~~~~-----------------~~~~~~~~~~~~   84 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA------HIYFINSEEPSQ-----------------LNDLQAFRSRYG   84 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------CCEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC------eEEEEECCCcCc-----------------HHHHHHHHHHcC
Confidence            478999999999999999999999999988752      366677764320                 112457889999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        85 i~~~Pt~~~~-~~G~~~~~  102 (118)
T 1zma_A           85 IPTVPGFVHI-TDGQINVR  102 (118)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             CCCCCeEEEE-ECCEEEEE
Confidence            9999999999 68988766

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.39  E-value=1.6e-13  Score=109.98  Aligned_cols=67  Identities=12%  Similarity=0.303  Sum_probs=53.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLH  111 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~  111 (351)
                      .+++|+|+|||+||+||+++.|.++++++++.++   +.++.|++|... .+++.+++...||+.|  +|+..
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~~-e~a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEVP-DFNTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-TTTTTTTCCSSEEEEEEETTEEE
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEE
Confidence            5789999999999999999999999999999765   555555555433 4677778888888864  77654

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.38  E-value=1.7e-12  Score=99.35  Aligned_cols=71  Identities=24%  Similarity=0.565  Sum_probs=62.8

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .++++++|.||++||++|+.+.|.|+++.++++     ++.++.|++|..                       ..++++|
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~-----------------------~~~~~~~   75 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDEL-----------------------KAVAEEW   75 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTC-----------------------HHHHHHH
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----CcEEEEEEcccc-----------------------HHHHHhC
Confidence            358999999999999999999999999988873     588888888764                       6789999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++|+++++ ++|+++.+
T Consensus        76 ~v~~~Pt~~~~-~~G~~~~~   94 (113)
T 1ti3_A           76 NVEAMPTFIFL-KDGKLVDK   94 (113)
T ss_dssp             HCSSTTEEEEE-ETTEEEEE
T ss_pred             CCCcccEEEEE-eCCEEEEE
Confidence            99999999999 79998876

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.38  E-value=2.6e-12  Score=99.11  Aligned_cols=70  Identities=26%  Similarity=0.597  Sum_probs=62.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|.||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..+++.|+
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~-----------------------~~~~~~~~   78 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----GAIFLKVDVDEL-----------------------KDVAEAYN   78 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CcEEEEEEcccC-----------------------HHHHHHcC
Confidence            48899999999999999999999999998874     578888888754                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        79 v~~~Pt~~~~-~~g~~~~~   96 (118)
T 2vm1_A           79 VEAMPTFLFI-KDGEKVDS   96 (118)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CCcCcEEEEE-eCCeEEEE
Confidence            9999999998 89998876

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.38  E-value=1.6e-12  Score=111.25  Aligned_cols=68  Identities=22%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             eeCCC-Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHh
Q 018726           28 LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK   97 (351)
Q Consensus        28 l~~~~-g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~   97 (351)
                      |.+.+ |+ +++++++||+|+|+|||+||++|+.++|.|.+++++|++.|  ++|+.|++|.       +.+.+.++.+
T Consensus        31 l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~~~~~e~d~~~~i~~f~~  107 (208)
T 2f8a_A           31 ARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEILNSLK  107 (208)
T ss_dssp             ECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHHHHHH
T ss_pred             eeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCcccccCCCCHHHHHHHHH
Confidence            78888 99 99999999999999999999999999999999999998877  8999999872       2345666654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=3.2e-12  Score=101.68  Aligned_cols=67  Identities=9%  Similarity=0.109  Sum_probs=56.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +|+++||+||++||++|+.+.|.|.++++++.     ++.++.|+++..                          .++|+
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~~~~--------------------------~~~~~   77 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-----ETKFVKAIVNSC--------------------------IEHYH   77 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-----SEEEEEECCSSS--------------------------CSSCC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----CcEEEEEEhhcC--------------------------cccCC
Confidence            36899999999999999999999999998874     467777776643                          15799


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        78 i~~~Pt~~~~-~~G~~v~~   95 (135)
T 2dbc_A           78 DNCLPTIFVY-KNGQIEGK   95 (135)
T ss_dssp             SSCCSEEEEE-SSSSCSEE
T ss_pred             CCCCCEEEEE-ECCEEEEE
Confidence            9999999999 59988776

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.37  E-value=5.3e-13  Score=108.76  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             eeC--CCCc-ccccCCCCCeEEEEEeCCCChhhhhh-hHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           28 LLS--RQGK-VPLSSCGGKTICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        28 l~~--~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~-~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +.+  .+|+ +++++++||+++|+||++||++|+.+ +|.+.++++++++.+  +.++.|++|
T Consensus        11 l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~   71 (158)
T 3eyt_A           11 IQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTV   71 (158)
T ss_dssp             EEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECC
T ss_pred             ehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEec
Confidence            555  3678 99999999999999999999999996 999999999998766  889999974

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.37  E-value=5.8e-12  Score=117.27  Aligned_cols=161  Identities=7%  Similarity=0.001  Sum_probs=100.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhh------HHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFT------PQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH  111 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~------p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~  111 (351)
                      ++++|+|+||||||++|+...      |.++++++.+++.+    +.++.+|++.. .+++.+++..+|++.+  +|+. 
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~----v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~~-  103 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG----VGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV-  103 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT----EEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEE-
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC----ceEEEEeCcccHHHHHHcCCCcCceEEEEECCcE-
Confidence            578999999999999974333      68999999987643    44555555433 5777788888888887  5543 


Q ss_pred             HHHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCC-ccee-ecccCCcEEEEEEecCCChhhHHhHHHHHHHH
Q 018726          112 KKLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH-RKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVY  189 (351)
Q Consensus       112 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g-~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~  189 (351)
                      ..+.|....+.+..++....         +   |... .++. ..+. +-....++++|.|+++||.   ...+.+.+++
T Consensus       104 ~~y~G~~~~~~i~~~i~~~~---------~---~~v~-~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A  167 (367)
T 3us3_A          104 IEYDGEFSADTLVEFLLDVL---------E---DPVE-LIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAA  167 (367)
T ss_dssp             EECCSCCSHHHHHHHHHHHH---------S---CSEE-ECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHhc---------C---CCcE-EcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHH
Confidence            24555444445544443221         1   1111 1111 1111 0011246888999999875   4456778888


Q ss_pred             HHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECC
Q 018726          190 NELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP  253 (351)
Q Consensus       190 ~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~  253 (351)
                      ..++    .++.+..+  .                        +..++++|++.. |+++++-+
T Consensus       168 ~~~~----~~~~F~~~--~------------------------~~~~~~~~~v~~-p~i~lf~~  200 (367)
T 3us3_A          168 EEFH----PYIPFFAT--F------------------------DSKVAKKLTLKL-NEIDFYEA  200 (367)
T ss_dssp             HHHT----TTSCEEEE--C------------------------CHHHHHHHTCCT-TCEEEECT
T ss_pred             Hhhc----CCcEEEEE--C------------------------CHHHHHHcCCCC-CeEEEEcC
Confidence            8886    34555443  2                        256888999986 99999954

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.36  E-value=4.3e-13  Score=103.70  Aligned_cols=84  Identities=19%  Similarity=0.413  Sum_probs=65.4

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++...+.....++|+++|.||++||++|+.+.|.+.+++++++. .+.++.++.|+++..                   
T Consensus        11 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~v~~~~vd~~~~-------------------   70 (120)
T 1mek_A           11 VLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA-EGSEIRLAKVDATEE-------------------   70 (120)
T ss_dssp             ECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEEETTTC-------------------
T ss_pred             EechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc-cCCcEEEEEEcCCCC-------------------
Confidence            344444443323579999999999999999999999999998874 224577777777653                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                          ..++++|++.++|+++++ ++|+++
T Consensus        71 ----~~~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           71 ----SDLAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             ----CSSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             ----HHHHHHCCCCcccEEEEE-eCCCcC
Confidence                467889999999999999 788765

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.36  E-value=2.9e-12  Score=110.02  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=60.8

Q ss_pred             Ccce-eeCCC-Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHH
Q 018726           24 GVEF-LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFE   93 (351)
Q Consensus        24 ~~~~-l~~~~-g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~   93 (351)
                      ..++ |.+.+ |+ +++++++||+|+|+|||+||++|+ .+|.|++++++|++.|  ++|+.|++|.       +.+.+.
T Consensus        35 ~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~~~~~i~  111 (215)
T 2i3y_A           35 IYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPGDNKEIL  111 (215)
T ss_dssp             GGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHH
T ss_pred             cCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCCCHHHHH
Confidence            3444 88999 99 999999999999999999999999 8999999999999887  9999999862       234566


Q ss_pred             HHHh
Q 018726           94 EHFK   97 (351)
Q Consensus        94 ~~~~   97 (351)
                      ++.+
T Consensus       112 ~f~~  115 (215)
T 2i3y_A          112 PGLK  115 (215)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.36  E-value=1.1e-12  Score=106.08  Aligned_cols=67  Identities=27%  Similarity=0.504  Sum_probs=58.7

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~   95 (351)
                      .+.+.+|+ +++++++||+++|.||++||++|+.+.|.+.++++++++.+  +.++.|++|.+.+.+.++
T Consensus        14 ~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~   81 (152)
T 2lja_A           14 SYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENM   81 (152)
T ss_dssp             EEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHHH
T ss_pred             EeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHHH
Confidence            38889999 99999999999999999999999999999999999998765  889999998776444444

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.35  E-value=3e-12  Score=105.45  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=63.5

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHh--
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK--   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~--   97 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++.+  
T Consensus        17 l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~   94 (170)
T 2p5q_A           17 VKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQFGEEEPGTNDQITDFVCTR   94 (170)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCHHHHHHHHHHH
T ss_pred             EEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCCCCCCCCCCHHHHHHHHHHh
Confidence            8899999 99999999999999999999999999999999999998876  8999999973       3445666654  


Q ss_pred             -cCCceee
Q 018726           98 -CMPWLAV  104 (351)
Q Consensus        98 -~~~~~~~  104 (351)
                       ..++|.+
T Consensus        95 ~~~~~~~~  102 (170)
T 2p5q_A           95 FKSEFPIF  102 (170)
T ss_dssp             TCCCSCBB
T ss_pred             cCCCceeE
Confidence             3445544

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.35  E-value=8.7e-13  Score=105.47  Aligned_cols=95  Identities=19%  Similarity=0.305  Sum_probs=70.6

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +.+.+|. ..++.++||+++|+||++||++|+.+.|.+.++++.+++.   +.++.|++|.+. .+.+.+++..+|++.+
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~  111 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP-ELARDFGIQSIPTIWF  111 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCCH-HHHHHcCCCCcCEEEE
Confidence            6677788 8888899999999999999999999999999999998764   667777666554 4666777777888776


Q ss_pred             ---ChHHHHHHhhhhhhhHHhhhc
Q 018726          107 ---DETLHKKLRIRKRREELKAID  127 (351)
Q Consensus       107 ---~~~~~~~l~~~~~~~~l~~~~  127 (351)
                         +|... ++.|....+++...+
T Consensus       112 ~~~~g~~~-~~~G~~~~~~l~~~l  134 (141)
T 3hxs_A          112 VPMKGEPQ-VNMGALSKEQLKGYI  134 (141)
T ss_dssp             ECSSSCCE-EEESCCCHHHHHHHH
T ss_pred             EeCCCCEE-EEeCCCCHHHHHHHH
Confidence               33322 444444444444443

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.35  E-value=7.2e-13  Score=105.38  Aligned_cols=75  Identities=23%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726          165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      +++|+||++||++|+.+.|.|.+++++++      +.++.|+++.....              ...+....++++|+|.+
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~   92 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD------VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEG   92 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC------SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCS
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC------CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCce
Confidence            89999999999999999999999987652      67888888643211              01123578899999999


Q ss_pred             eeeEEEECCCCceEec
Q 018726          245 IPALVLIGPDGKTIST  260 (351)
Q Consensus       245 ~P~~~lid~~G~v~~~  260 (351)
                      +||+++++ +|+++.+
T Consensus        93 ~Pt~~~~~-~G~~v~~  107 (135)
T 3emx_A           93 TPTLVFYK-EGRIVDK  107 (135)
T ss_dssp             SSEEEEEE-TTEEEEE
T ss_pred             eCeEEEEc-CCEEEEE
Confidence            99988885 9999877

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.35  E-value=1.6e-12  Score=107.70  Aligned_cols=84  Identities=17%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             ceeeecccCcce-eeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC---h
Q 018726           16 FLTVLASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD---E   89 (351)
Q Consensus        16 ~~~~~~~~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~---~   89 (351)
                      +...+..+-++| |.+.+|+ +++++++||+|+|+||++||+ +|...++.+.++++.+++.+.++++++|++|..   .
T Consensus         4 ~~~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp   83 (170)
T 4hde_A            4 LRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKP   83 (170)
T ss_dssp             CCSCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred             cccCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccH
Confidence            344455556667 9999999 999999999999999999997 699999999999999988877799999999843   3


Q ss_pred             hhHHHHHhcC
Q 018726           90 NGFEEHFKCM   99 (351)
Q Consensus        90 ~~~~~~~~~~   99 (351)
                      +.++++.+.+
T Consensus        84 ~~l~~y~~~~   93 (170)
T 4hde_A           84 ENLKAFIQKF   93 (170)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHc
Confidence            4566776654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=3.6e-12  Score=102.99  Aligned_cols=71  Identities=21%  Similarity=0.371  Sum_probs=64.1

Q ss_pred             eeCCCCc-cccc--CCCCCeEEEEEeCCCChh--hhhhhHHHHHHHHHH-hhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLS--SCGGKTICLFFSANWCRP--CKTFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~--~~~gk~v~v~F~a~wC~~--C~~~~p~~~~l~~~~-~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      |.+.+|+ ++++  +++||+++|.||++||++  |+.++|.+.++++++ ++.+  ++++.|++|.+.+.+.++.+..+
T Consensus        16 l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~   92 (150)
T 3fw2_A           16 LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVDKQQWKDAIKRDT   92 (150)
T ss_dssp             EEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSCHHHHHHHHHHTT
T ss_pred             eECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCCHHHHHHHHHHhC
Confidence            8899999 9999  999999999999999999  999999999999999 6665  89999999988777888776444

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=2.9e-12  Score=115.82  Aligned_cols=83  Identities=20%  Similarity=0.392  Sum_probs=66.5

Q ss_pred             cCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++.+.+.-.- -.+++++|+|||+||++|+.+.|.+.+++++++    ..+.|+.|++|.+.                 
T Consensus        21 ~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~----~~~~~~~v~~d~~~-----------------   79 (298)
T 3ed3_A           21 ELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD----GVVQVAAVNCDLNK-----------------   79 (298)
T ss_dssp             ECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTSTT-----------------
T ss_pred             EeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCcEEEEEEccCcc-----------------
Confidence            55555444222 247899999999999999999999999999987    45899999998542                 


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                          ...++++|+|.++||+++++ +|+++
T Consensus        80 ----~~~l~~~~~I~~~Pt~~~~~-~g~~v  104 (298)
T 3ed3_A           80 ----NKALCAKYDVNGFPTLMVFR-PPKID  104 (298)
T ss_dssp             ----THHHHHHTTCCBSSEEEEEE-CCCC-
T ss_pred             ----CHHHHHhCCCCccceEEEEE-CCcee
Confidence                47899999999999999995 56543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.33  E-value=2e-12  Score=104.45  Aligned_cols=65  Identities=26%  Similarity=0.521  Sum_probs=58.1

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~   95 (351)
                      +.+ +|. +++++++||+++|.||++||++|+.+.|.+.++++++++.+  +.++.|++|.+.+.+.++
T Consensus        14 l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~   79 (152)
T 3gl3_A           14 LPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKF   79 (152)
T ss_dssp             EEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHH
T ss_pred             eeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHH
Confidence            777 888 99999999999999999999999999999999999999877  899999999776544444

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.33  E-value=1.2e-12  Score=104.60  Aligned_cols=67  Identities=22%  Similarity=0.598  Sum_probs=57.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC---ChhhHHHHHh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFK   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~~~~   97 (351)
                      +.+.+|+ +++++ +||+++|.||++||++|+.++|.+.+++++++..+  +.++.|++|.   +.+.+.++.+
T Consensus        20 l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~   90 (145)
T 3erw_A           20 MKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVVEDFIK   90 (145)
T ss_dssp             EECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHHHHHHHH
T ss_pred             eecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHHHHHHHH
Confidence            8899999 99999 99999999999999999999999999999987555  8899999975   3444555544

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.33  E-value=2.4e-12  Score=104.27  Aligned_cols=59  Identities=27%  Similarity=0.618  Sum_probs=55.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.+.+  +.++.|++|.+
T Consensus        13 l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~   72 (154)
T 3kcm_A           13 LNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEG   72 (154)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTT
T ss_pred             EEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCc
Confidence            8899999 99999999999999999999999999999999999998765  88999999876

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.33  E-value=1e-11  Score=108.92  Aligned_cols=70  Identities=20%  Similarity=0.467  Sum_probs=61.4

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+|||+||++|+.+.|.+.+++++++. ...++.++.|+++.+.                     ...++++|+
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~v~~~~vd~~~~~---------------------~~~l~~~~~   86 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKA-WRPALYLAALDCAEET---------------------NSAVCRDFN   86 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGG-GTTTEEEEEEETTSTT---------------------THHHHHHTT
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHh-ccCcEEEEEEeCCchh---------------------hHHHHHHcC
Confidence            358999999999999999999999999999974 3358999999996432                     478999999


Q ss_pred             cCceeeEEEECC
Q 018726          242 IKGIPALVLIGP  253 (351)
Q Consensus       242 i~~~P~~~lid~  253 (351)
                      |.++||++++++
T Consensus        87 v~~~Pt~~~~~~   98 (244)
T 3q6o_A           87 IPGFPTVRFFXA   98 (244)
T ss_dssp             CCSSSEEEEECT
T ss_pred             CCccCEEEEEeC
Confidence            999999999975

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.33  E-value=3.6e-12  Score=106.59  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhc-
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKC-   98 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~-   98 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++.+. 
T Consensus        34 l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~~~~~~~~~~~  111 (181)
T 2p31_A           34 AVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQFGQQEPDSNKEIESFARRT  111 (181)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHHHHHH
T ss_pred             eecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcCCCCCCCCCHHHHHHHHHhh
Confidence            8899999 99999999999999999999999999999999999998876  8999999874       34455555433 


Q ss_pred             --CCceee
Q 018726           99 --MPWLAV  104 (351)
Q Consensus        99 --~~~~~~  104 (351)
                        .++|.+
T Consensus       112 ~~~~~p~~  119 (181)
T 2p31_A          112 YSVSFPMF  119 (181)
T ss_dssp             HCCCSCBB
T ss_pred             cCCCceeE
Confidence              345544

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.32  E-value=1.2e-12  Score=106.05  Aligned_cols=58  Identities=19%  Similarity=0.341  Sum_probs=53.5

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.+.|.+.++++++++.+  +.++.|+++.
T Consensus        13 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~   71 (153)
T 2l5o_A           13 LPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPI   71 (153)
T ss_dssp             EECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTT
T ss_pred             eecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCC
Confidence            8889999 99999999999999999999999999999999999998766  8888888653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.4e-12  Score=106.53  Aligned_cols=59  Identities=19%  Similarity=0.367  Sum_probs=54.8

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +++ |.+.+|+ +++++++||+++|.|||+||++|+ ++|.+.++++++++.+  +.++.|++|
T Consensus        13 ~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d   73 (171)
T 3cmi_A           13 YKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCN   73 (171)
T ss_dssp             GGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEEC
T ss_pred             eeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECc
Confidence            444 8899999 999999999999999999999999 9999999999998876  899999986

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.32  E-value=5.5e-12  Score=107.75  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             cce-eeCCC-Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHH
Q 018726           25 VEF-LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEE   94 (351)
Q Consensus        25 ~~~-l~~~~-g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~   94 (351)
                      .++ |.+.+ |+ +++++++||+|||+|||+||++| ..+|.|.+++++|++.|  ++|+.|++|.       +.+.+.+
T Consensus        18 pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~~~~i~~   94 (207)
T 2r37_A           18 YEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGENSEILP   94 (207)
T ss_dssp             GGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSCHHHHHH
T ss_pred             CCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCCHHHHHH
Confidence            444 88999 99 99999999999999999999999 78999999999999887  9999999762       2345666


Q ss_pred             HHh
Q 018726           95 HFK   97 (351)
Q Consensus        95 ~~~   97 (351)
                      +.+
T Consensus        95 f~~   97 (207)
T 2r37_A           95 TLK   97 (207)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.32  E-value=4.8e-12  Score=106.65  Aligned_cols=75  Identities=17%  Similarity=0.291  Sum_probs=63.2

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHH-h-
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF-K-   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~-~-   97 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++. + 
T Consensus        33 l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~  110 (190)
T 2vup_A           33 VLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQFGGQEPGNEEEIKEFVCTK  110 (190)
T ss_dssp             CBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSTTCCCSCHHHHHHHHHHH
T ss_pred             EEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCccCCCCCCCHHHHHHHHHHh
Confidence            8899999 99999999999999999999999999999999999998876  8999999983       444555555 3 


Q ss_pred             -cCCceee
Q 018726           98 -CMPWLAV  104 (351)
Q Consensus        98 -~~~~~~~  104 (351)
                       ..++|.+
T Consensus       111 ~~~~~p~l  118 (190)
T 2vup_A          111 FKAEFPIM  118 (190)
T ss_dssp             HCCCSCBB
T ss_pred             cCCCeEEE
Confidence             3445544

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.31  E-value=8.1e-12  Score=102.74  Aligned_cols=76  Identities=16%  Similarity=0.224  Sum_probs=63.0

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHH-h-
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF-K-   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~-~-   97 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++. + 
T Consensus        16 l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   93 (169)
T 2v1m_A           16 VKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQFGGQEPWAEAEIKKFVTEK   93 (169)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHHHHHH
T ss_pred             eecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCccCCCCCCCHHHHHHHHHHh
Confidence            8899999 99999999999999999999999999999999999998876  8999999873       233455442 3 


Q ss_pred             -cCCceeee
Q 018726           98 -CMPWLAVP  105 (351)
Q Consensus        98 -~~~~~~~~  105 (351)
                       ..++|.+.
T Consensus        94 ~~~~~~~~~  102 (169)
T 2v1m_A           94 YGVQFDMFS  102 (169)
T ss_dssp             HCCCSEEBC
T ss_pred             cCCCCceEE
Confidence             34566553

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.31  E-value=4.7e-12  Score=101.60  Aligned_cols=71  Identities=24%  Similarity=0.420  Sum_probs=63.5

Q ss_pred             eeCCCCc-cccc--CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHH-hhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~--~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~-~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +.+.+|+ ++++  +++||+++|.||++||++|+.++|.+.++++++ ++.+  +.++.|++|.+.+.+.++.+..+
T Consensus        16 l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~   90 (148)
T 3fkf_A           16 LPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAWETAIKKDT   90 (148)
T ss_dssp             EEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCHHHHHHHHHHTT
T ss_pred             eeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCHHHHHHHHHHcC
Confidence            8889999 9999  999999999999999999999999999999999 6666  89999999988777777766444

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.31  E-value=7.6e-12  Score=104.96  Aligned_cols=75  Identities=16%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~~   99 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++.+..
T Consensus        34 l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~~~~~~~~~~~~~~~~~~~~  111 (185)
T 2gs3_A           34 AKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSNEEIKEFAAGY  111 (185)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCHHHHHHHHHHT
T ss_pred             eEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcccCCCCCCCHHHHHHHHHHc
Confidence            8899999 99999999999999999999999999999999999998876  8999999873       234456665544


Q ss_pred             --Cceee
Q 018726          100 --PWLAV  104 (351)
Q Consensus       100 --~~~~~  104 (351)
                        ++|.+
T Consensus       112 ~~~~p~~  118 (185)
T 2gs3_A          112 NVKFDMF  118 (185)
T ss_dssp             TCCSEEB
T ss_pred             CCCCeee
Confidence              34444

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.31  E-value=1.2e-12  Score=107.25  Aligned_cols=58  Identities=14%  Similarity=0.202  Sum_probs=54.3

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      .|.+.+|+ +++++++||+++|+||++||++|+.++|.+.+++++++..+  +.+++|++|
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~   80 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASP   80 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcC
Confidence            68899999 99999999999999999999999999999999999987776  889999975

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.31  E-value=9.5e-12  Score=116.49  Aligned_cols=149  Identities=15%  Similarity=0.185  Sum_probs=86.7

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCc-EEEEEEEecCChh-hHHHHHhcCCceee
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE-LEVIFISFDHDEN-GFEEHFKCMPWLAV  104 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~-~~iv~i~~d~~~~-~~~~~~~~~~~~~~  104 (351)
                      +...+++ +...-.++++|+|.|||+||++|+++.|.+.++++.+++.++. -.+.++.+|++.. .+++.+++..+|++
T Consensus         7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~   86 (382)
T 2r2j_A            7 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTL   86 (382)
T ss_dssp             -CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEE
T ss_pred             eEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEE
Confidence            3444444 4322236899999999999999999999999999999643210 1255555555433 46777777778888


Q ss_pred             ec--ChHHHH-HHhhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceeeccc-CCcEEEEEEecCCChhhHH
Q 018726          105 PF--DETLHK-KLRIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSEL-AGKTIGLYFGAHWCPPCRS  180 (351)
Q Consensus       105 ~~--~~~~~~-~l~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~  180 (351)
                      .+  +|.... .+.|....+.+..++.....         ...  -.++. ...+.  .+ ..+.++|.|+++++.+.  
T Consensus        87 ~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~---------~~v--~~l~~-~~~l~--~l~~~~~~~v~ff~~~~~~~--  150 (382)
T 2r2j_A           87 KLFRNGMMMKREYRGQRSVKALADYIRQQKS---------DPI--QEIRD-LAEIT--TLDRSKRNIIGYFEQKDSDN--  150 (382)
T ss_dssp             EEEETTEEEEEECCSCCSHHHHHHHHHHHHS---------CCC--EEC---------------CCEEEEEESCSSSHH--
T ss_pred             EEEeCCcEeeeeecCcchHHHHHHHHHHhcc---------CCc--eecCC-HHHHH--HhcCCCCEEEEEECCCCChh--
Confidence            76  665433 35554445555554443221         110  11110 11111  12 24567788888876553  


Q ss_pred             hHHHHHHHHHHhh
Q 018726          181 FTSQLIEVYNELK  193 (351)
Q Consensus       181 ~~~~l~~l~~~~~  193 (351)
                       .+.+.+++..++
T Consensus       151 -~~~f~~~A~~~~  162 (382)
T 2r2j_A          151 -YRVFERVANILH  162 (382)
T ss_dssp             -HHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHhh
Confidence             456788888886

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.31  E-value=6.9e-12  Score=104.99  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~~   99 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.       +.+.+.++.+..
T Consensus        32 l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~~~~~~~~~~~  109 (183)
T 2obi_A           32 AKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSNEEIKEFAAGY  109 (183)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHHHHTT
T ss_pred             EEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECCCCCCCCCCCHHHHHHHHHHc
Confidence            8899999 99999999999999999999999999999999999998876  8999999873       344566665544


Q ss_pred             C--ceee
Q 018726          100 P--WLAV  104 (351)
Q Consensus       100 ~--~~~~  104 (351)
                      +  +|.+
T Consensus       110 ~~~~p~~  116 (183)
T 2obi_A          110 NVKFDMF  116 (183)
T ss_dssp             TCCSEEB
T ss_pred             CCCceEE
Confidence            3  4444

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.31  E-value=2.8e-12  Score=92.87  Aligned_cols=63  Identities=17%  Similarity=0.273  Sum_probs=55.7

Q ss_pred             EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726          165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      .+++.||++||++|+.+.|.|++++++++    .++.++.|++|.+                       ..++++|++.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~   55 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDIMVD-----------------------REKAIEYGLMA   55 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECTTTC-----------------------GGGGGGTCSSC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHhCCcee
Confidence            46899999999999999999999999886    5688999988864                       57888999999


Q ss_pred             eeeEEEECCCCce
Q 018726          245 IPALVLIGPDGKT  257 (351)
Q Consensus       245 ~P~~~lid~~G~v  257 (351)
                      +|++++   +|++
T Consensus        56 ~Pt~~~---~G~~   65 (85)
T 1nho_A           56 VPAIAI---NGVV   65 (85)
T ss_dssp             SSEEEE---TTTE
T ss_pred             eCEEEE---CCEE
Confidence            999998   7887

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.30  E-value=1.2e-12  Score=104.93  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=50.9

Q ss_pred             CcEEEEEEecCC--ChhhHHhHHHHHHHHHHhhcccCCceE--EEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          163 GKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFE--VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       163 gk~vll~F~a~~--C~~C~~~~~~l~~l~~~~~~~~~~~~~--vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      ++.+||+|+++|  |++|+.+.|.|++++++| .    ++.  ++.|++|.                       ...+++
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~----~v~~~~~~Vd~d~-----------------------~~~la~   85 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P----QFDWQVAVADLEQ-----------------------SEAIGD   85 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T----TSCCEEEEECHHH-----------------------HHHHHH
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c----ccceeEEEEECCC-----------------------CHHHHH
Confidence            345788999887  999999999999999887 3    355  77777664                       468999


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|+|.++||++++ ++|+++.+
T Consensus        86 ~~~V~~iPT~~~f-k~G~~v~~  106 (142)
T 2es7_A           86 RFNVRRFPATLVF-TDGKLRGA  106 (142)
T ss_dssp             TTTCCSSSEEEEE-SCC----C
T ss_pred             hcCCCcCCeEEEE-eCCEEEEE
Confidence            9999999999999 99998877

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.30  E-value=3.5e-12  Score=92.36  Aligned_cols=64  Identities=23%  Similarity=0.421  Sum_probs=56.7

Q ss_pred             cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC
Q 018726          164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  243 (351)
Q Consensus       164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  243 (351)
                      .++++.||++||++|+.+.|.|++++++++    +++.++.|+++.+                       ..++++|++.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~   55 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINVMEN-----------------------PQKAMEYGIM   55 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEESSSS-----------------------CCTTTSTTTC
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHCCCc
Confidence            478999999999999999999999999886    5789999998864                       4678899999


Q ss_pred             ceeeEEEECCCCce
Q 018726          244 GIPALVLIGPDGKT  257 (351)
Q Consensus       244 ~~P~~~lid~~G~v  257 (351)
                      ++|++++   +|++
T Consensus        56 ~~Pt~~~---~G~~   66 (85)
T 1fo5_A           56 AVPTIVI---NGDV   66 (85)
T ss_dssp             CSSEEEE---TTEE
T ss_pred             ccCEEEE---CCEE
Confidence            9999998   7887

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.29  E-value=1.8e-12  Score=101.80  Aligned_cols=99  Identities=7%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             eeCCCCc-ccccC-CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceee
Q 018726           28 LLSRQGK-VPLSS-CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAV  104 (351)
Q Consensus        28 l~~~~g~-~~~~~-~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~  104 (351)
                      +...+++ +...- ..+|+++|+|||+||++|+.+.|.+.++++.+......-.+.++.+|.+.. .+++.+++..+|++
T Consensus        17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   96 (127)
T 3h79_A           17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTM   96 (127)
T ss_dssp             CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEE
Confidence            4444554 43222 258999999999999999999999999999886321111244555554433 57777888888888


Q ss_pred             ec--ChHHH--HHHhhhhhhhHHhhh
Q 018726          105 PF--DETLH--KKLRIRKRREELKAI  126 (351)
Q Consensus       105 ~~--~~~~~--~~l~~~~~~~~l~~~  126 (351)
                      .+  +|+..  .++.|....+.+.++
T Consensus        97 ~~~~~g~~~~~~~~~G~~~~~~l~~~  122 (127)
T 3h79_A           97 RYYTRIDKQEPFEYSGQRYLSLVDSF  122 (127)
T ss_dssp             EEECSSCSSSCEECCSCCCHHHHHHH
T ss_pred             EEEeCCCCCCceEecCCccHHHHHHH
Confidence            76  44332  234444444444433

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.29  E-value=1.3e-11  Score=119.52  Aligned_cols=89  Identities=20%  Similarity=0.421  Sum_probs=70.4

Q ss_pred             cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++++.+..... .+++++|+|||+||++|+.+.|.+.+++++++. .+..+.|+.|+++.+.                 
T Consensus        16 ~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~-~~~~v~~~~VD~d~d~-----------------   77 (519)
T 3t58_A           16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKD-WRPALNLAVLDCAEET-----------------   77 (519)
T ss_dssp             EECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGG-GTTTEEEEEEETTSGG-----------------
T ss_pred             ECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhC-cCCcEEEEEEECCccc-----------------
Confidence            444555543322 368999999999999999999999999999974 3357999999997532                 


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECC---CCceEec
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGP---DGKTIST  260 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~---~G~v~~~  260 (351)
                          ...++++|+|.++||++++++   +|+++..
T Consensus        78 ----~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~  108 (519)
T 3t58_A           78 ----NSAVCREFNIAGFPTVRFFQAFTKNGSGATL  108 (519)
T ss_dssp             ----GHHHHHHTTCCSBSEEEEECTTCCSCCCEEE
T ss_pred             ----cHHHHHHcCCcccCEEEEEcCcccCCCceeE
Confidence                578999999999999999986   5654433

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.29  E-value=2.9e-12  Score=101.29  Aligned_cols=65  Identities=22%  Similarity=0.340  Sum_probs=56.7

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~   95 (351)
                      .+.+.+|+ +++++++||+++|.||++||++|+.+.|.+.++++++.  +  +.++.|++|.+.+.+.++
T Consensus         8 ~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~   73 (136)
T 1lu4_A            8 TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSF   73 (136)
T ss_dssp             EEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHH
T ss_pred             EeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHH
Confidence            38889999 99999999999999999999999999999999999987  3  789999998755444444

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.29  E-value=5.8e-12  Score=102.73  Aligned_cols=77  Identities=18%  Similarity=0.372  Sum_probs=64.3

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC------------------
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD------------------   88 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~------------------   88 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  +.++.|++|.+                  
T Consensus        26 l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~~~d~  103 (158)
T 3hdc_A           26 LPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKYRRAPVSFNFLSDA  103 (158)
T ss_dssp             EECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSSSCCGGGGGCCCSCEEEECT
T ss_pred             eEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCHHHHHHHHHcCCCceEEECc
Confidence            8899999 99999999999999999999999999999999999998655  88888888762                  


Q ss_pred             hhhHHHHHhcCCceeeec
Q 018726           89 ENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~  106 (351)
                      ...+.+.++...+|++.+
T Consensus       104 ~~~~~~~~~v~~~P~~~l  121 (158)
T 3hdc_A          104 TGQVQQRYGANRLPDTFI  121 (158)
T ss_dssp             TSHHHHHTTCCSSSEEEE
T ss_pred             hHHHHHHhCCCCcceEEE
Confidence            224556666666776444

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.29  E-value=7.3e-12  Score=97.81  Aligned_cols=78  Identities=21%  Similarity=0.432  Sum_probs=61.0

Q ss_pred             cCCcEEEEEEecC-------CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726          161 LAGKTIGLYFGAH-------WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  233 (351)
Q Consensus       161 ~~gk~vll~F~a~-------~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~  233 (351)
                      .+|++++|+||++       ||++|+.+.|.|.+++++++    .++.++.|+++... .+               .+..
T Consensus        22 ~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~~~~~-~~---------------~d~~   81 (123)
T 1wou_A           22 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQVGEKP-YW---------------KDPN   81 (123)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEECCCHH-HH---------------HCTT
T ss_pred             hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC----CCcEEEEEECCCch-hh---------------hchh
Confidence            3589999999999       99999999999999988775    47889999886321 11               0114


Q ss_pred             HHHHHHcCcCceeeEEEECCCCceE
Q 018726          234 QDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       234 ~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      ..+++.|+|.++||+++++..++++
T Consensus        82 ~~~~~~~~i~~~Pt~~~~~~~~~~~  106 (123)
T 1wou_A           82 NDFRKNLKVTAVPTLLKYGTPQKLV  106 (123)
T ss_dssp             CHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred             HHHHHHCCCCeeCEEEEEcCCceEe
Confidence            5788899999999999997633443

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.94  E-value=3.1e-13  Score=108.06  Aligned_cols=80  Identities=34%  Similarity=0.701  Sum_probs=65.9

Q ss_pred             eeeCCCCc-ccccC-CCCC-eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC--Cc
Q 018726           27 FLLSRQGK-VPLSS-CGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PW  101 (351)
Q Consensus        27 ~l~~~~g~-~~~~~-~~gk-~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~  101 (351)
                      .|.+.+|+ +++++ ++|| +++|.||++||++|+.++|.+.++++++++.+.++.+++|++|.+.+.+.++.+..  +|
T Consensus         8 ~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~   87 (143)
T 2lus_A            8 KLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDW   87 (143)
Confidence            37888999 99999 9999 99999999999999999999999999996543348899999997766666665544  45


Q ss_pred             eeeec
Q 018726          102 LAVPF  106 (351)
Q Consensus       102 ~~~~~  106 (351)
                      +.+++
T Consensus        88 ~~~~~   92 (143)
T 2lus_A           88 LAIPY   92 (143)
Confidence            55555

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.94  E-value=3.1e-13  Score=101.99  Aligned_cols=71  Identities=28%  Similarity=0.577  Sum_probs=61.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|.||++||++|+.+.|.+++++++++    .++.++.|++|.+                       ..+++.|+
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   70 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE----GKVKVVKVNVDEN-----------------------PNTAAQYG   70 (106)
Confidence            47899999999999999999999999998886    4577777777653                       57889999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++|+++++ ++|+++.+
T Consensus        71 v~~~Pt~~~~-~~g~~~~~   88 (106)
T 2yj7_A           71 IRSIPTLLLF-KNGQVVDR   88 (106)
Confidence            9999999999 89988766

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.28  E-value=1.4e-12  Score=102.76  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CCeEEEEEeCCCC--hhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           42 GKTICLFFSANWC--RPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        42 gk~v~v~F~a~wC--~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      +++|+|+|||+||  ++|+++.|.+.+++++|.++   +.++.|++|.. ..+...++++.+||+.+  +|+...++.|.
T Consensus        33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~-~~la~~ygV~siPTlilFkdG~~v~~~vG~  108 (137)
T 2qsi_A           33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAE-RGLMARFGVAVCPSLAVVQPERTLGVIAKI  108 (137)
T ss_dssp             SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGH-HHHHHHHTCCSSSEEEEEECCEEEEEEESC
T ss_pred             CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCC-HHHHHHcCCccCCEEEEEECCEEEEEEeCC
Confidence            4599999999999  99999999999999999765   55665555533 35777788888888887  89888888775


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                      ..-.++...++
T Consensus       109 ~~k~~l~~~l~  119 (137)
T 2qsi_A          109 QDWSSYLAQIG  119 (137)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            55455554443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.28  E-value=2.5e-11  Score=99.24  Aligned_cols=73  Identities=19%  Similarity=0.374  Sum_probs=61.7

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhc--CCcEEEEEEEecCC---hhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR--GTELEVIFISFDHD---ENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~--~~~~~iv~i~~d~~---~~~~~~~~~~~~  100 (351)
                      |.+.+|+ +++++++||+++|+||++||++ |+.++|.+.++++++++.  ..++++++|++|.+   .+.+.++.+..+
T Consensus         8 l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~   87 (164)
T 2ggt_A            8 LTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFS   87 (164)
T ss_dssp             EEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTC
T ss_pred             EEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcC
Confidence            8899999 9999999999999999999998 999999999999999862  12389999999863   345667766554

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.27  E-value=2.2e-12  Score=104.44  Aligned_cols=85  Identities=13%  Similarity=0.162  Sum_probs=62.2

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHH------
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLH------  111 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~------  111 (351)
                      .++|+|+|+|||+||++|+.+.|.+.++++++++.   +.++.|++|... .+.+.+++..+|++.+  +|+..      
T Consensus        21 ~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~g~   96 (149)
T 3gix_A           21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQTA-VYTQYFDISYIPSTVFFFNGQHMKVDYGS   96 (149)
T ss_dssp             CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTCC-HHHHHTTCCSSSEEEEEETTEEEEEECSS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcCH-HHHHHcCCCccCeEEEEECCeEEEeecCC
Confidence            36899999999999999999999999999988765   667666666444 4666677777777766  67665      


Q ss_pred             ---HHHhh-hhhhhHHhhhcc
Q 018726          112 ---KKLRI-RKRREELKAIDD  128 (351)
Q Consensus       112 ---~~l~~-~~~~~~l~~~~~  128 (351)
                         .++.+ ....+++...++
T Consensus        97 ~~~~~~~G~~~~~~~l~~~l~  117 (149)
T 3gix_A           97 PDHTKFVGSFKTKQDFIDLIE  117 (149)
T ss_dssp             SCCSCEESCCSSHHHHHHHHH
T ss_pred             CCCCeEeeecCCHHHHHHHHH
Confidence               55555 444444444433

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.27  E-value=2.5e-12  Score=102.56  Aligned_cols=99  Identities=17%  Similarity=0.268  Sum_probs=69.3

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceee
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAV  104 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~  104 (351)
                      .+...+++ +.....++|+++|+||++||++|+.+.|.+.++++.+++.+..  +.++.+|.+.. .+.+.++...+|++
T Consensus        18 ~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           18 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPP--IAVAKIDATSASMLASKFDVSGYPTI   95 (140)
T ss_dssp             TEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSC--CEEEEECTTTCHHHHHHTTCCSSSEE
T ss_pred             CCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCc--eEEEEEeCcccHHHHHHCCCCccCeE
Confidence            35555666 5544457899999999999999999999999999999876533  45555555433 46667777778888


Q ss_pred             ec--ChHHHHHHhhhhhhhHHhhhcc
Q 018726          105 PF--DETLHKKLRIRKRREELKAIDD  128 (351)
Q Consensus       105 ~~--~~~~~~~l~~~~~~~~l~~~~~  128 (351)
                      .+  +|+ ..++.+....+.+..++.
T Consensus        96 ~~~~~G~-~~~~~g~~~~~~l~~~l~  120 (140)
T 2dj1_A           96 KILKKGQ-AVDYDGSRTQEEIVAKVR  120 (140)
T ss_dssp             EEEETTE-EEECCSCCCHHHHHHHHH
T ss_pred             EEEECCc-EEEcCCCCCHHHHHHHHH
Confidence            76  665 445555444455555444

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.27  E-value=1.6e-11  Score=101.50  Aligned_cols=75  Identities=21%  Similarity=0.356  Sum_probs=65.0

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC---ChhhHHHHHhcCCc
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKCMPW  101 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~~~~~~~~  101 (351)
                      .|.+.+|+ +++++++||+++|.||++||+ +|+..+|.+.++++++++.+.++++++|++|.   +.+.+.++.+.++.
T Consensus        17 ~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~   96 (174)
T 1xzo_A           17 TFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPL   96 (174)
T ss_dssp             EEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCC
T ss_pred             EEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence            38899999 999999999999999999999 99999999999999998875568999999984   45567777776553

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.27  E-value=2.6e-12  Score=103.04  Aligned_cols=56  Identities=21%  Similarity=0.347  Sum_probs=51.0

Q ss_pred             eCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        29 ~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      .+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.+.   +.++.|++|.
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~   71 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPR   71 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCC
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCC
Confidence            567899 9999999999999999999999999999999999999765   7899999764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.27  E-value=5.8e-12  Score=109.97  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++|||.||++||++|+.+.|.|.+++++|+     ++.|+.|+++.                        ..++..|+
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----~v~f~kVd~d~------------------------~~l~~~~~  182 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----MVKFCKIKASN------------------------TGAGDRFS  182 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----TSEEEEEEHHH------------------------HCCTTSSC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----CCEEEEEeCCc------------------------HHHHHHCC
Confidence            48999999999999999999999999999885     37777776642                        24567899


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus       183 I~~~PTll~~-~~G~~v~~  200 (245)
T 1a0r_P          183 SDVLPTLLVY-KGGELLSN  200 (245)
T ss_dssp             TTTCSEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-ECCEEEEE
Confidence            9999999999 69998876

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.27  E-value=3.1e-11  Score=99.48  Aligned_cols=74  Identities=20%  Similarity=0.375  Sum_probs=62.1

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhc--CCcEEEEEEEecC---ChhhHHHHHhcC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR--GTELEVIFISFDH---DENGFEEHFKCM   99 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~--~~~~~iv~i~~d~---~~~~~~~~~~~~   99 (351)
                      .|.+.+|+ +++++++||+++|+||++||++ |+.++|.+.++++++++.  +.++++++|++|.   +.+.+.++.+..
T Consensus        10 ~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~   89 (171)
T 2rli_A           10 HLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDF   89 (171)
T ss_dssp             EEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTT
T ss_pred             EEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHc
Confidence            38899999 9999999999999999999998 999999999999999752  1238999999984   344566776655


Q ss_pred             C
Q 018726          100 P  100 (351)
Q Consensus       100 ~  100 (351)
                      +
T Consensus        90 ~   90 (171)
T 2rli_A           90 H   90 (171)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.27  E-value=5e-12  Score=99.02  Aligned_cols=89  Identities=10%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec---ChHHHH
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF---DETLHK  112 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~---~~~~~~  112 (351)
                      ....+||+++|.||++||++|+.+.|.+.++++++++.   +.++.|++|.+.. .+.+.++...+|++.+   +|+...
T Consensus        21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK---FNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSS---CEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEE
Confidence            45568999999999999999999999999999998633   6777777435433 4677778888888877   465555


Q ss_pred             HHhhhhhhhHHhhhcc
Q 018726          113 KLRIRKRREELKAIDD  128 (351)
Q Consensus       113 ~l~~~~~~~~l~~~~~  128 (351)
                      ++.|....+++.+.++
T Consensus        98 ~~~G~~~~~~l~~~l~  113 (126)
T 2l57_A           98 VHQGLMRKNNIETILN  113 (126)
T ss_dssp             EEESCCCHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHH
Confidence            5555444445544443

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.27  E-value=1.9e-11  Score=102.42  Aligned_cols=72  Identities=29%  Similarity=0.457  Sum_probs=61.7

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCc
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPW  101 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~  101 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++++.+  ++++.|++|.+ .+...++.+.+++
T Consensus        45 l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~  118 (186)
T 1jfu_A           45 FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANL  118 (186)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHHHTTC
T ss_pred             eEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCCCHHHHHHHHHHcCC
Confidence            8899999 99999999999999999999999999999999999998655  89999999865 3445555555443

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.26  E-value=6.5e-13  Score=101.80  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +...+||+|||+||++|+.+.+.+...++....  ...+.|+.|+++.+.                     ...++..|+
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~--~~~~~l~~vdv~~~~---------------------~~~la~~~~   73 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE--GRAAPVQRLQMRDPL---------------------PPGLELARP   73 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH--HHHSCEEEEETTSCC---------------------CTTCBCSSC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh--cccceEEEEECCCCC---------------------chhHHHHCC
Confidence            346899999999999999998765444332110  023668888888652                     246778899


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||+++++ +|+.+.+
T Consensus        74 V~g~PT~i~f~-~G~ev~R   91 (116)
T 3dml_A           74 VTFTPTFVLMA-GDVESGR   91 (116)
T ss_dssp             CCSSSEEEEEE-TTEEEEE
T ss_pred             CCCCCEEEEEE-CCEEEee
Confidence            99999999996 9999887

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.26  E-value=1.7e-11  Score=100.39  Aligned_cols=71  Identities=21%  Similarity=0.226  Sum_probs=62.6

Q ss_pred             eeCCCCc-ccccCCCCCe-EEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726           28 LLSRQGK-VPLSSCGGKT-ICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW  101 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~-v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (351)
                      |.+.+|+ +++++++||+ ++|.|| ++||++|+.++|.+.++++++++.|  ++++.|++|. .+.+.++.+..++
T Consensus        13 l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~~~~~~~~~~~   86 (161)
T 3drn_A           13 GIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSDD-INSHKRFKEKYKL   86 (161)
T ss_dssp             EEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESCC-HHHHHHHHHHTTC
T ss_pred             eecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCCC-HHHHHHHHHHhCC
Confidence            8899999 9999999998 999999 9999999999999999999999877  8999999974 5566777665553

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.25  E-value=5.1e-12  Score=95.44  Aligned_cols=82  Identities=18%  Similarity=0.296  Sum_probs=62.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|.||++||++|+.+.|.+.++++.++++   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~   93 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDENP-STAAKYEVMSIPTLIVFKDGQPVDKVVGFQ   93 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSBSEEEEEETTEEEEEEESCC
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcCH-HHHHhCCCcccCEEEEEeCCeEEEEEeCCC
Confidence            8999999999999999999999999999998765   677777776554 4666677777888876  666555555544


Q ss_pred             hhhHHhhh
Q 018726          119 RREELKAI  126 (351)
Q Consensus       119 ~~~~l~~~  126 (351)
                      ..+++.+.
T Consensus        94 ~~~~l~~~  101 (106)
T 3die_A           94 PKENLAEV  101 (106)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            44444433

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.25  E-value=6.5e-12  Score=99.07  Aligned_cols=67  Identities=19%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      .+.+.+|+ +++++++||+++|.||++||++|+.+.|.+.+++++++  +  +.++.|++|.+.+.+.++.+
T Consensus         9 ~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~   76 (136)
T 1zzo_A            9 SAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--E--VTFVGVAGLDQVPAMQEFVN   76 (136)
T ss_dssp             EEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHH
T ss_pred             ccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--C--eEEEEEeCCCCHHHHHHHHH
Confidence            38889999 99999999999999999999999999999999999987  3  78999999875544444433

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.25  E-value=3.6e-12  Score=96.53  Aligned_cols=83  Identities=12%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|+|||+||++|+.+.|.+.++++++. .   +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        16 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~---~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~   90 (105)
T 4euy_A           16 EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-Y---VEKIEILLQDMQ-EIAGRYAVFTGPTVLLFYNGKEILRESRF   90 (105)
T ss_dssp             TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-T---EEEEEEEECCC----------CCCCEEEEEETTEEEEEEESS
T ss_pred             hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-C---ceEEEEECCCCH-HHHHhcCCCCCCEEEEEeCCeEEEEEeCC
Confidence            368999999999999999999999999999873 2   677777777655 4556667777788776  67665555554


Q ss_pred             hhhhHHhhhc
Q 018726          118 KRREELKAID  127 (351)
Q Consensus       118 ~~~~~l~~~~  127 (351)
                      ...+++...+
T Consensus        91 ~~~~~l~~~l  100 (105)
T 4euy_A           91 ISLENLERTI  100 (105)
T ss_dssp             CCHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            4444444433

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.25  E-value=4.8e-12  Score=97.04  Aligned_cols=84  Identities=20%  Similarity=0.339  Sum_probs=64.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|.||++||++|+.+.|.+.++++++++.   +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~   91 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDENQ-ETAGKYGVMSIPTLLVLKDGEVVETSVGFK   91 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTCC-SHHHHTTCCSBSEEEEEETTEEEEEEESCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-HHHHHcCCCcccEEEEEeCCEEEEEEeCCC
Confidence            7899999999999999999999999999998754   677777776554 4666677777888877  777666666655


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+++.+.+.
T Consensus        92 ~~~~l~~~l~  101 (112)
T 2voc_A           92 PKEALQELVN  101 (112)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555555544

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.24  E-value=5.2e-12  Score=101.90  Aligned_cols=97  Identities=11%  Similarity=0.283  Sum_probs=69.9

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      ++..+++ +.....++|+++|+||++||++|+.+.|.+.++++.+.+.   +.++.|++|.+. .+.+.+++..+|++.+
T Consensus        40 v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~  115 (148)
T 3p2a_A           40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAEP-ALSTRFRIRSIPTIML  115 (148)
T ss_dssp             CEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             ceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCCH-HHHHHCCCCccCEEEE
Confidence            4455555 4444468999999999999999999999999999998755   566666666544 4666777777888876


Q ss_pred             --ChHHHHHHhhhhhhhHHhhhcc
Q 018726          107 --DETLHKKLRIRKRREELKAIDD  128 (351)
Q Consensus       107 --~~~~~~~l~~~~~~~~l~~~~~  128 (351)
                        +|+...++.|....+.+..++.
T Consensus       116 ~~~G~~~~~~~G~~~~~~l~~~l~  139 (148)
T 3p2a_A          116 YRNGKMIDMLNGAVPKAPFDNWLD  139 (148)
T ss_dssp             EETTEEEEEESSCCCHHHHHHHHH
T ss_pred             EECCeEEEEEeCCCCHHHHHHHHH
Confidence              6766556666555555555444

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.23  E-value=3.2e-11  Score=100.34  Aligned_cols=84  Identities=21%  Similarity=0.388  Sum_probs=67.8

Q ss_pred             cCCCceeeecccC-cce-eeCCCC--c-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           12 DSSDFLTVLASEG-VEF-LLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        12 ~~~~~~~~~~~~~-~~~-l~~~~g--~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +...+.++..|.. +++ +.+.+|  + +++++++||+++|.||++||++|+.++|.+.+++++    +  +.++.|++|
T Consensus        23 ~~~~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~   96 (176)
T 3kh7_A           23 DPSELPSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYK   96 (176)
T ss_dssp             CGGGSTTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEES
T ss_pred             CcccccccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCC
Confidence            3334444555533 344 888888  7 999999999999999999999999999999999886    3  789999999


Q ss_pred             CChhhHHHHHhcCCc
Q 018726           87 HDENGFEEHFKCMPW  101 (351)
Q Consensus        87 ~~~~~~~~~~~~~~~  101 (351)
                      .+.+.+.++.+..++
T Consensus        97 d~~~~~~~~~~~~~~  111 (176)
T 3kh7_A           97 DDNAAAIKWLNELHN  111 (176)
T ss_dssp             CCHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHcCC
Confidence            888888888776654

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.23  E-value=2.2e-11  Score=104.92  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             Ccce-eeCCCCc-ccccCCCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-------CChhhHH
Q 018726           24 GVEF-LLSRQGK-VPLSSCGGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFE   93 (351)
Q Consensus        24 ~~~~-l~~~~g~-~~~~~~~gk~-v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~   93 (351)
                      .+++ |.+.+|+ +++++++||+ ++|.||++||++|+.++|.+.++++++++.+  ++++.|++|       .+.+.+.
T Consensus        38 aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~d~~~~~~  115 (218)
T 3u5r_E           38 AADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPEETLERVG  115 (218)
T ss_dssp             CCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGGGSHHHHH
T ss_pred             CCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccCCHHHHH
Confidence            3444 8899999 9999999994 9999999999999999999999999998877  899999997       3444566


Q ss_pred             HHHhcCC
Q 018726           94 EHFKCMP  100 (351)
Q Consensus        94 ~~~~~~~  100 (351)
                      ++.+..+
T Consensus       116 ~~~~~~~  122 (218)
T 3u5r_E          116 AEVKAYG  122 (218)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            6655443

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.23  E-value=3.9e-11  Score=101.94  Aligned_cols=85  Identities=21%  Similarity=0.267  Sum_probs=67.5

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhc-CCcEEEEEEEecC---ChhhHHHHHh
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDH---DENGFEEHFK   97 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~-~~~~~iv~i~~d~---~~~~~~~~~~   97 (351)
                      +++ |.+.+|+ +++++++||+++|+||++||++ |+.++|.|.++++++... +.++++++|++|.   +.+.+.++.+
T Consensus        22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~  101 (200)
T 2b7k_A           22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS  101 (200)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHH
Confidence            445 8899999 9999999999999999999998 999999999999999754 3348999999995   4455777766


Q ss_pred             cCC--ceeeecChH
Q 018726           98 CMP--WLAVPFDET  109 (351)
Q Consensus        98 ~~~--~~~~~~~~~  109 (351)
                      .++  |+.+....+
T Consensus       102 ~~~~~~~~l~~~~d  115 (200)
T 2b7k_A          102 DFHPSILGLTGTFD  115 (200)
T ss_dssp             TSCTTCEEEECCHH
T ss_pred             HcCCCceEEeCCHH
Confidence            554  444433333

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.23  E-value=8.5e-13  Score=100.39  Aligned_cols=74  Identities=19%  Similarity=0.449  Sum_probs=54.7

Q ss_pred             cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhh
Q 018726          154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  233 (351)
Q Consensus       154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~  233 (351)
                      ..+++++..+|.++|.|||+||++|+.+.|.|.+++++++        .+-+..|...                   +..
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~-------------------~~~   55 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPG-------------------TPQ   55 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTT-------------------SCC
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEeccccc-------------------chh
Confidence            3566777788999999999999999999999998875553        3333322110                   013


Q ss_pred             HHHHHHcCcCceeeEEEECCCCce
Q 018726          234 QDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       234 ~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                      ..++++|+|.++||+++   +|++
T Consensus        56 ~~l~~~~~V~~~PT~~i---~G~~   76 (106)
T 3kp8_A           56 AQECTEAGITSYPTWII---NGRT   76 (106)
T ss_dssp             CHHHHHTTCCSSSEEEE---TTEE
T ss_pred             HHHHHHcCCeEeCEEEE---CCEE
Confidence            68999999999999776   6764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.23  E-value=3.8e-12  Score=96.60  Aligned_cols=94  Identities=13%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +...+++ +...-.++|+++|.||++||++|+.+.|.+.++++.+++.   +.++.+++|.+. .+.+.++...+|++.+
T Consensus         6 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A            6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDENQ-KIADKYSVLNIPTTLI   81 (109)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             EEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccCH-HHHHhcCcccCCEEEE
Confidence            3334444 4433346999999999999999999999999999998764   567777666544 4666777777888766


Q ss_pred             --ChHHHHHHhhhhhhhHHhh
Q 018726          107 --DETLHKKLRIRKRREELKA  125 (351)
Q Consensus       107 --~~~~~~~l~~~~~~~~l~~  125 (351)
                        +|+...++.|....+++..
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~  102 (109)
T 3tco_A           82 FVNGQLVDSLVGAVDEDTLES  102 (109)
T ss_dssp             EETTEEEEEEESCCCHHHHHH
T ss_pred             EcCCcEEEeeeccCCHHHHHH
Confidence              6765555555444444443

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.23  E-value=1.9e-11  Score=100.34  Aligned_cols=70  Identities=27%  Similarity=0.511  Sum_probs=61.2

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec------------------CC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD------------------HD   88 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d------------------~~   88 (351)
                      +.+.+|+ +++++++||+++|.||++||++|+.++|.+.+++++++  +  +.++.|++|                  .+
T Consensus        22 l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3ha9_A           22 LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALGLNKPGYPPPDT   97 (165)
T ss_dssp             EEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHTCCSTTSCCCCC
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEecccccccccccccccCCCCCC
Confidence            8889999 99999999999999999999999999999999999987  3  899999998                  56


Q ss_pred             hhhHHHHHhcCCc
Q 018726           89 ENGFEEHFKCMPW  101 (351)
Q Consensus        89 ~~~~~~~~~~~~~  101 (351)
                      .+.+.++.+..++
T Consensus        98 ~~~~~~~~~~~~~  110 (165)
T 3ha9_A           98 PEMFRKFIANYGD  110 (165)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCC
Confidence            6666666665443

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.22  E-value=2e-12  Score=101.62  Aligned_cols=71  Identities=25%  Similarity=0.537  Sum_probs=61.0

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..+.++|
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~-----------------------~~~~~~~   85 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----GAVFLKVDVDEL-----------------------KEVAEKY   85 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----TBCCEECCTTTS-----------------------GGGHHHH
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----CCEEEEEeccch-----------------------HHHHHHc
Confidence            358999999999999999999999999998874     467777777653                       5788999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++|+++++ ++|+++.+
T Consensus        86 ~v~~~Pt~~~~-~~g~~~~~  104 (130)
T 1wmj_A           86 NVEAMPTFLFI-KDGAEADK  104 (130)
T ss_dssp             TCCSSCCCCBC-TTTTCCBC
T ss_pred             CCCccceEEEE-eCCeEEEE
Confidence            99999998888 89998766

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.21  E-value=1.1e-11  Score=97.63  Aligned_cols=71  Identities=25%  Similarity=0.429  Sum_probs=55.6

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec-----CChhhHHHHHhcCC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKCMP  100 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~  100 (351)
                      .+.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.+.   +.++.|..+     .+.+.+.++.+..+
T Consensus         6 ~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~~~~~   82 (138)
T 4evm_A            6 ELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDD---YVVLTVVSPGHKGEQSEADFKNWYKGLD   82 (138)
T ss_dssp             EEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTT---EEEEEEECTTSTTCCCHHHHHHHHTTCC
T ss_pred             eeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCC---cEEEEEEcCCCCchhhHHHHHHHHhhcC
Confidence            38889999 9999999999999999999999999999999999985433   777777432     23334555555443

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.21  E-value=7.6e-12  Score=94.41  Aligned_cols=83  Identities=22%  Similarity=0.385  Sum_probs=60.8

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.+++.   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        15 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~   90 (105)
T 1nsw_A           15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-ETTSQFGIMSIPTLILFKGGRPVKQLIGY   90 (105)
T ss_dssp             SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCCH-HHHHHcCCccccEEEEEeCCeEEEEEecC
Confidence            36899999999999999999999999999998754   667777776554 4566677777788876  66655445544


Q ss_pred             hhhhHHhhh
Q 018726          118 KRREELKAI  126 (351)
Q Consensus       118 ~~~~~l~~~  126 (351)
                      ...+.+...
T Consensus        91 ~~~~~l~~~   99 (105)
T 1nsw_A           91 QPKEQLEAQ   99 (105)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            333444433

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.21  E-value=1.3e-11  Score=93.61  Aligned_cols=82  Identities=21%  Similarity=0.358  Sum_probs=60.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++++++.   +.++.++++.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~   93 (108)
T 2trx_A           18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAATKVGA   93 (108)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-THHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-HHHHHcCCcccCEEEEEeCCEEEEEEecC
Confidence            46899999999999999999999999999998754   666666666544 4666677777888877  67655445444


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                      ...+++.+
T Consensus        94 ~~~~~l~~  101 (108)
T 2trx_A           94 LSKGQLKE  101 (108)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            33344433

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.21  E-value=1.3e-11  Score=106.24  Aligned_cols=69  Identities=17%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      +|++|||.||++||++|+.+.|.|.+++++|+     ++.|+.|+++ .                       ..++..|+
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-----~v~f~~vd~~-~-----------------------~~l~~~~~  169 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----MVKFCKIRAS-N-----------------------TGAGDRFS  169 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----TSEEEEEEHH-H-----------------------HTCSTTSC
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-----CeEEEEEECC-c-----------------------HHHHHHCC
Confidence            46899999999999999999999999988874     5777777765 2                       45677899


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus       170 i~~~PTl~~~-~~G~~v~~  187 (217)
T 2trc_P          170 SDVLPTLLVY-KGGELISN  187 (217)
T ss_dssp             GGGCSEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-ECCEEEEE
Confidence            9999999999 69998866

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.21  E-value=9e-11  Score=96.95  Aligned_cols=90  Identities=16%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             cCCCcEecCCCcceee--cccCCcEEEEEEec-------CCChhhHHhHHHHHHHHHHhhcc-cCCceEEEEEeCCCCHH
Q 018726          143 EGRDYVLSRDHRKITV--SELAGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       143 ~~pdf~~~~~g~~~~l--~~~~gk~vll~F~a-------~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~  212 (351)
                      ..++..+.++...+..  ..-++.++||.|||       .||++|+.+.|.|++++++|... .+.++.|..|++|..  
T Consensus        15 ~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~--   92 (178)
T 3ga4_A           15 KDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV--   92 (178)
T ss_dssp             CCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC--
T ss_pred             hccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC--
Confidence            3344455566655542  12235689999999       49999999999999999999621 114688888888864  


Q ss_pred             HHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726          213 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~  256 (351)
                                           ..++++|||+++||++++ ++|.
T Consensus        93 ---------------------~~la~~~~I~siPtl~~F-~~g~  114 (178)
T 3ga4_A           93 ---------------------PQLVKDLKLQNVPHLVVY-PPAE  114 (178)
T ss_dssp             ---------------------HHHHHHTTCCSSCEEEEE-CCCC
T ss_pred             ---------------------HHHHHHcCCCCCCEEEEE-cCCC
Confidence                                 799999999999999999 5553

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.21  E-value=8.4e-12  Score=95.22  Aligned_cols=78  Identities=14%  Similarity=0.255  Sum_probs=58.7

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHK  112 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~  112 (351)
                      +.....+||+++|+||++||++|+.+.|.+.++++++++    +.++.|++|... .+.+.+++..+|++.+  +|+...
T Consensus        17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~   91 (109)
T 3f3q_A           17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDELG-DVAQKNEVSAMPTLLLFKNGKEVA   91 (109)
T ss_dssp             HHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCCH-HHHHHcCCCccCEEEEEECCEEEE
Confidence            333334699999999999999999999999999998753    467777666544 4666777777888877  666555


Q ss_pred             HHhhh
Q 018726          113 KLRIR  117 (351)
Q Consensus       113 ~l~~~  117 (351)
                      ++.|.
T Consensus        92 ~~~G~   96 (109)
T 3f3q_A           92 KVVGA   96 (109)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            55554

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.21  E-value=6.7e-12  Score=97.36  Aligned_cols=97  Identities=13%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             eeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcC--CcEEEEEEEecCChhhHHHHHhcCCcee
Q 018726           28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG--TELEVIFISFDHDENGFEEHFKCMPWLA  103 (351)
Q Consensus        28 l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~--~~~~iv~i~~d~~~~~~~~~~~~~~~~~  103 (351)
                      +...+++ +... ..++|+++|+|||+||++|+.+.|.+.++++++++.+  ..+.++.++++.  ..+.+  +...+|+
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~--~v~~~Pt   84 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA--NDVPD--EIQGFPT   84 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT--SCCSS--CCSSSSE
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc--ccccc--ccCcCCe
Confidence            4555666 5544 3478999999999999999999999999999998621  124555555543  33333  6666778


Q ss_pred             eec--ChHH--HHHHhhhhhhhHHhhhcc
Q 018726          104 VPF--DETL--HKKLRIRKRREELKAIDD  128 (351)
Q Consensus       104 ~~~--~~~~--~~~l~~~~~~~~l~~~~~  128 (351)
                      +.+  +++.  ..++.+....+++.++++
T Consensus        85 ~~~~~~~~~~~~~~~~G~~~~~~l~~~i~  113 (121)
T 2djj_A           85 IKLYPAGAKGQPVTYSGSRTVEDLIKFIA  113 (121)
T ss_dssp             EEEECSSCTTSCCCCCCCSCHHHHHHHHH
T ss_pred             EEEEeCcCCCCceEecCCCCHHHHHHHHH
Confidence            776  3322  344555444455544443

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.20  E-value=6.1e-12  Score=97.18  Aligned_cols=80  Identities=20%  Similarity=0.358  Sum_probs=59.1

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|+||++||++|+.+.|.+.++++++++    +.++.|++|... .+.+.+++..+|++.+  +|+...++.|.
T Consensus        29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~  103 (116)
T 3qfa_C           29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ-DVASECEVKSMPTFQFFKKGQKVGEFSGA  103 (116)
T ss_dssp             HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTTH-HHHHHTTCCSSSEEEEESSSSEEEEEESC
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCH-HHHHHcCCccccEEEEEeCCeEEEEEcCC
Confidence            3799999999999999999999999999988754    456666665443 4666777777888877  66655555554


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                       ..+++.+
T Consensus       104 -~~~~l~~  110 (116)
T 3qfa_C          104 -NKEKLEA  110 (116)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             4444443

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.20  E-value=1.1e-11  Score=94.65  Aligned_cols=82  Identities=18%  Similarity=0.412  Sum_probs=60.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      +||+++|.||++||++|+.+.|.+.++++++++.   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~   97 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDENP-GTAAKYGVMSIPTLNVYQGGEVAKTIVGAK   97 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCCH-HHHHhCCCCcccEEEEEeCCEEEEEEeCCC
Confidence            5899999999999999999999999999998654   677777777554 4566677777888876  666555555544


Q ss_pred             hhhHHhhh
Q 018726          119 RREELKAI  126 (351)
Q Consensus       119 ~~~~l~~~  126 (351)
                      ..+++.+.
T Consensus        98 ~~~~l~~~  105 (112)
T 1t00_A           98 PKAAIVRD  105 (112)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            34444433

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.20  E-value=2.3e-11  Score=91.95  Aligned_cols=73  Identities=12%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|+|+|+||++|+...|.++++.++      .++.++.|.+|...                   +.+.+++.+|||
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~------~~v~~~~vdVde~r-------------------~~Sn~IA~~~~V   78 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE------RDMDGYYLIVQQER-------------------DLSDYIAKKTNV   78 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH------HTCCEEEEEGGGGH-------------------HHHHHHHHHHTC
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc------CCceEEEEEeecCc-------------------hhhHHHHHHhCC
Confidence            68999999999999999999999999873      35778888888642                   113569999999


Q ss_pred             C-ceeeEEEECCCCceEecc
Q 018726          243 K-GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       243 ~-~~P~~~lid~~G~v~~~~  261 (351)
                      . ..|+++++ ++|+++++.
T Consensus        79 ~h~sPq~il~-k~G~~v~~~   97 (112)
T 3iv4_A           79 KHESPQAFYF-VNGEMVWNR   97 (112)
T ss_dssp             CCCSSEEEEE-ETTEEEEEE
T ss_pred             ccCCCeEEEE-ECCEEEEEe
Confidence            9 49999999 999999873

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.20  E-value=3.6e-11  Score=98.45  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      |.+.+|+ ++++++.||+++|.||+ +||++|+..+|.+.++++++++.|  +++++|++| +.+...++.+.
T Consensus        20 l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~~~~~~~   89 (163)
T 3gkn_A           20 LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSHDNFCAK   89 (163)
T ss_dssp             EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHHHHHHHH
T ss_pred             ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHHH
Confidence            7889999 99999999999999998 999999999999999999999887  889999998 44455555443

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.20  E-value=8.2e-12  Score=105.48  Aligned_cols=61  Identities=23%  Similarity=0.389  Sum_probs=54.8

Q ss_pred             cce-ee-CCCCc-ccccCCCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           25 VEF-LL-SRQGK-VPLSSCGGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        25 ~~~-l~-~~~g~-~~~~~~~gk~-v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +++ +. +.+|+ +++++++||. ++|.||++||++|+.++|.+.++++++.+.+  +.++.|++|.
T Consensus        25 p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~   89 (196)
T 2ywi_A           25 PPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSND   89 (196)
T ss_dssp             CCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSC
T ss_pred             CceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCc
Confidence            344 77 89999 9999999985 9999999999999999999999999998776  8899999863

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.20  E-value=6.2e-11  Score=110.93  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHhhhccCCceeec
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  227 (351)
                      .++++.+...--.+++++|.|||+||++|+.+.|.+.++++++++..  ..++.++.|+++..                 
T Consensus         9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~-----------------   71 (382)
T 2r2j_A            9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH-----------------   71 (382)
T ss_dssp             BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC-----------------
T ss_pred             ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc-----------------
Confidence            45555554322357899999999999999999999999999985310  24588888888864                 


Q ss_pred             cCchhhHHHHHHcCcCceeeEEEECCCCceEe
Q 018726          228 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       228 ~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~  259 (351)
                            ..++++|+|.++||++++ ++|+++.
T Consensus        72 ------~~l~~~~~v~~~Pt~~~f-~~G~~~~   96 (382)
T 2r2j_A           72 ------SDIAQRYRISKYPTLKLF-RNGMMMK   96 (382)
T ss_dssp             ------HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             ------HHHHHhcCCCcCCEEEEE-eCCcEee
Confidence                  689999999999999998 7888764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.20  E-value=1.1e-11  Score=94.62  Aligned_cols=75  Identities=12%  Similarity=0.312  Sum_probs=56.8

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHh
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLR  115 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  115 (351)
                      .+..||+++|.||++||++|+.+.|.+.++++.+++    +.++.|+++.+...+.+.++...+|++.+  +|+...++.
T Consensus        20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   95 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT   95 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSEEEEEE
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEEEEEc
Confidence            334799999999999999999999999999998763    56777777644446777777777788666  665544444


Q ss_pred             h
Q 018726          116 I  116 (351)
Q Consensus       116 ~  116 (351)
                      |
T Consensus        96 G   96 (111)
T 2pu9_C           96 G   96 (111)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.19  E-value=7.3e-12  Score=100.14  Aligned_cols=87  Identities=13%  Similarity=0.064  Sum_probs=65.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..+|+++|.||++||++|+.+.|.+.++++.++++   +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        22 ~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~   97 (140)
T 3hz4_A           22 DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATNP-WTAEKYGVQGTPTFKFFCHGRPVWEQVGQ   97 (140)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTCH-HHHHHHTCCEESEEEEEETTEEEEEEESS
T ss_pred             hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcCH-hHHHHCCCCcCCEEEEEeCCcEEEEEcCC
Confidence            36899999999999999999999999999999875   567777766554 4666677777788876  77666566665


Q ss_pred             hhhhHHhhhcccc
Q 018726          118 KRREELKAIDDSK  130 (351)
Q Consensus       118 ~~~~~l~~~~~~~  130 (351)
                      ...+.+...+...
T Consensus        98 ~~~~~l~~~l~~~  110 (140)
T 3hz4_A           98 IYPSILKNAVRDM  110 (140)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            5555555554433

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.19  E-value=1.3e-11  Score=100.63  Aligned_cols=85  Identities=16%  Similarity=0.224  Sum_probs=63.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..+++++|+||++||++|+.+.|.++++++++.++   +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        62 ~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~G~~~~~~~G~  137 (155)
T 2ppt_A           62 RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAHP-AVAGRHRIQGIPAFILFHKGRELARAAGA  137 (155)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTST-HHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCccH-HHHHHcCCCcCCEEEEEeCCeEEEEecCC
Confidence            36899999999999999999999999999999764   566666666544 4666677777788876  77665555554


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                      ...+++..+++
T Consensus       138 ~~~~~l~~~l~  148 (155)
T 2ppt_A          138 RPASELVGFVR  148 (155)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            44444544443

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.19  E-value=1.3e-11  Score=94.10  Aligned_cols=83  Identities=17%  Similarity=0.325  Sum_probs=61.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.++++   +.++.+++|... .+.+.++...+|++.+  +|+...++.|.
T Consensus        20 ~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~   95 (111)
T 3gnj_A           20 DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEEK-TLFQRFSLKGVPQILYFKDGEYKGKMAGD   95 (111)
T ss_dssp             TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-HHHHHTTCCSSCEEEEEETTEEEEEEESS
T ss_pred             hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcCh-hHHHhcCCCcCCEEEEEECCEEEEEEecc
Confidence            46899999999999999999999999999998764   667777766544 4666777777888876  67655555554


Q ss_pred             hhhhHHhhh
Q 018726          118 KRREELKAI  126 (351)
Q Consensus       118 ~~~~~l~~~  126 (351)
                      ...+++.+.
T Consensus        96 ~~~~~l~~~  104 (111)
T 3gnj_A           96 VEDDEVEQM  104 (111)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            444444443

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=1.7e-12  Score=105.94  Aligned_cols=68  Identities=28%  Similarity=0.451  Sum_probs=57.7

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHH-HHHHHh-hcCCcEEEEEEEecCChhhHHHHHh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ-LYDTLR-TRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~-l~~~~~-~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.+ ++++++ +.+  +.++.|++|.+.+.+.++.+
T Consensus        18 l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~   88 (159)
T 2ls5_A           18 ITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNAD--FALIGIDRDEPLEKVLAFAK   88 (159)
Confidence            7889999 99999999999999999999999999999998 999887 444  78888888866554555543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.19  E-value=6.2e-12  Score=95.79  Aligned_cols=85  Identities=12%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhhh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRKR  119 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~  119 (351)
                      +++++|.||++||++|+.+.|.+.++++.+......+.++.++++.+. .+.+.++...+|++.+  +|+...++.|...
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~   99 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER-NICSKYSVRGYPTLLLFRGGKKVSEHSGGRD   99 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEECSCCS
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH-hHHHhcCCCcccEEEEEeCCcEEEeccCCcC
Confidence            889999999999999999999999999987644223555555555433 4667777777888776  6765555555544


Q ss_pred             hhHHhhhc
Q 018726          120 REELKAID  127 (351)
Q Consensus       120 ~~~l~~~~  127 (351)
                      .+++..++
T Consensus       100 ~~~l~~~l  107 (111)
T 3uvt_A          100 LDSLHRFV  107 (111)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45554443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.19  E-value=1.5e-11  Score=99.49  Aligned_cols=66  Identities=27%  Similarity=0.466  Sum_probs=55.1

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec--CChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD--HDENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d--~~~~~~~~~~~~~   99 (351)
                      +.+.+|+ +++++++ |+++|.||++||++|+.++|.+.++++++   +  ++++.|++|  .+.+.+.++.+..
T Consensus        16 l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~~~~~~~~   84 (154)
T 3ia1_A           16 LLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVVLEYMKTY   84 (154)
T ss_dssp             EECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHHHHHHTTC
T ss_pred             EECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHHHHHHHHc
Confidence            8899999 9999999 99999999999999999999999999999   2  789999993  3343444444433

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.19  E-value=1.6e-11  Score=95.02  Aligned_cols=79  Identities=15%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-----hhHHHHHhcCCceeeec--ChHHHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-----NGFEEHFKCMPWLAVPF--DETLHKK  113 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~  113 (351)
                      +|++++|+|||+||++|+.+.|.+.+++++++.     .+++++++...     ..+.+.++...+|++.+  +|+...+
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G~~~~~  102 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVR  102 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEEE
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECCEEEEE
Confidence            688999999999999999999999999998752     47788776533     13566677778888876  6665555


Q ss_pred             HhhhhhhhHHh
Q 018726          114 LRIRKRREELK  124 (351)
Q Consensus       114 l~~~~~~~~l~  124 (351)
                      +.|....+++.
T Consensus       103 ~~G~~~~~~l~  113 (118)
T 1zma_A          103 CDSSMSAQEIK  113 (118)
T ss_dssp             CCTTCCHHHHH
T ss_pred             ecCCCCHHHHH
Confidence            55543334443

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.18  E-value=1.4e-11  Score=113.47  Aligned_cols=57  Identities=30%  Similarity=0.448  Sum_probs=52.6

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      |.+.+|+ +++++++||+++|+||++||++|+.++|.+.++++++++.+  +.++.|++|
T Consensus        67 L~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d  124 (352)
T 2hyx_A           67 LNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTP  124 (352)
T ss_dssp             ESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             cCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECC
Confidence            5678898 99999999999999999999999999999999999998866  889999875

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.18  E-value=3.8e-11  Score=99.29  Aligned_cols=74  Identities=27%  Similarity=0.367  Sum_probs=62.7

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC--ChhhHHHHHhcCC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENGFEEHFKCMP  100 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~--~~~~~~~~~~~~~  100 (351)
                      .|.+.+|+ +++++++||+++|.||++||+ .|...+|.+.++++++...+.++++++|++|.  +.+.+.++.+.++
T Consensus        12 ~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~   89 (170)
T 3me7_A           12 TLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYG   89 (170)
T ss_dssp             EEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTT
T ss_pred             EEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcC
Confidence            38899999 999999999999999999998 59999999999999997655569999999984  3445666665544

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=3.3e-11  Score=94.95  Aligned_cols=100  Identities=8%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             eeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhc-CCcEEEEEEEecCChhhHHHHHhcCCceee
Q 018726           28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-GTELEVIFISFDHDENGFEEHFKCMPWLAV  104 (351)
Q Consensus        28 l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (351)
                      +...++. +... ...+|+++|.||++||++|+.+.|.+.+++++++.. ...+.++.|+++.+. .+.+.++...+|++
T Consensus         9 v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~   87 (133)
T 1x5d_A            9 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ-VLASRYGIRGFPTI   87 (133)
T ss_dssp             CEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC-HHHHHHTCCSSSEE
T ss_pred             CEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH-HHHHhCCCCeeCeE
Confidence            3444444 3322 235899999999999999999999999999999731 112555555555433 46666777778888


Q ss_pred             ec--ChHHHHHHhhhhhhhHHhhhcc
Q 018726          105 PF--DETLHKKLRIRKRREELKAIDD  128 (351)
Q Consensus       105 ~~--~~~~~~~l~~~~~~~~l~~~~~  128 (351)
                      .+  +|+...++.+....+.+...+.
T Consensus        88 ~~~~~g~~~~~~~G~~~~~~l~~~l~  113 (133)
T 1x5d_A           88 KIFQKGESPVDYDGGRTRSDIVSRAL  113 (133)
T ss_dssp             EEEETTEEEEEECSCCSHHHHHHHHH
T ss_pred             EEEeCCCceEEecCCCCHHHHHHHHH
Confidence            76  5554444555444445544443

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.18  E-value=9.9e-12  Score=101.45  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=57.7

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc-
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC-   98 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~-   98 (351)
                      ..++| |.+.+|+ +++++++||+++|.|| ++||++|+..+|.+.++++++++.+  ++++.|+.|.. +...++.+. 
T Consensus         9 ~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d~~-~~~~~~~~~~   85 (157)
T 4g2e_A            9 LAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVDPP-FSNKAFKEHN   85 (157)
T ss_dssp             BCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESSCH-HHHHHHHHHT
T ss_pred             CCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeecccch-hHHHHHHHHc
Confidence            34455 8999999 9999999999999999 9999999999999999999998877  88999998753 344555443 


Q ss_pred             -CCcee
Q 018726           99 -MPWLA  103 (351)
Q Consensus        99 -~~~~~  103 (351)
                       +++|.
T Consensus        86 ~~~~p~   91 (157)
T 4g2e_A           86 KLNFTI   91 (157)
T ss_dssp             TCCSEE
T ss_pred             CCcEEE
Confidence             44543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.17  E-value=2.4e-11  Score=92.00  Aligned_cols=81  Identities=11%  Similarity=0.272  Sum_probs=59.1

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++++++.   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        17 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~   92 (107)
T 1dby_A           17 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-NVASEYGIRSIPTIMVFKGGKKCETIIGA   92 (107)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHHTCCSSCEEEEESSSSEEEEEESC
T ss_pred             cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-HHHHHCCCCcCCEEEEEeCCEEEEEEeCC
Confidence            36899999999999999999999999999998754   667777666544 4566677777788766  66654444443


Q ss_pred             hhhhHHh
Q 018726          118 KRREELK  124 (351)
Q Consensus       118 ~~~~~l~  124 (351)
                      ...+++.
T Consensus        93 ~~~~~l~   99 (107)
T 1dby_A           93 VPKATIV   99 (107)
T ss_dssp             CCHHHHH
T ss_pred             CCHHHHH
Confidence            3333333

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.16  E-value=4.3e-11  Score=90.44  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=60.7

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++++++|.||++||++|+.+.|.+.++++.+.+.   +.++.++++.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        18 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~   93 (107)
T 2i4a_A           18 KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDNP-ETPNAYQVRSIPTLMLVRDGKVIDKKVGA   93 (107)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTCC-HHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCCH-HHHHhcCCCccCEEEEEeCCEEEEEecCC
Confidence            46899999999999999999999999999998754   667777766544 4666677777888877  67655445444


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                      ...+.+.+
T Consensus        94 ~~~~~l~~  101 (107)
T 2i4a_A           94 LPKSQLKA  101 (107)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            33344433

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.16  E-value=1.1e-10  Score=82.85  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726          166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  245 (351)
Q Consensus       166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  245 (351)
                      ..|.||++||++|+.+.|.+++++++++    .++.++.|+   +                       ..++++|++.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~~v~---~-----------------------~~~~~~~~v~~~   51 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELG----IDAEFEKIK---E-----------------------MDQILEAGLTAL   51 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEEC---S-----------------------HHHHHHHTCSSS
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcC----CceEEEEec---C-----------------------HHHHHHCCCCcC
Confidence            3589999999999999999999999886    467777665   2                       578889999999


Q ss_pred             eeEEEECCCCceEec
Q 018726          246 PALVLIGPDGKTIST  260 (351)
Q Consensus       246 P~~~lid~~G~v~~~  260 (351)
                      ||+++   +|+++.+
T Consensus        52 Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           52 PGLAV---DGELKIM   63 (77)
T ss_dssp             SCEEE---TTEEEEC
T ss_pred             CEEEE---CCEEEEc
Confidence            99988   8988766

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.16  E-value=2.6e-11  Score=95.32  Aligned_cols=83  Identities=13%  Similarity=0.263  Sum_probs=59.5

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHH-HHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETL-HKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~  116 (351)
                      ..+|+++|.||++||++|+.+.|.+.++++++++.   +.++.|++|.+. .+.+.++...+|++.+  +++. ..++.+
T Consensus        33 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G  108 (130)
T 2dml_A           33 QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKHQ-SLGGQYGVQGFPTIKIFGANKNKPEDYQG  108 (130)
T ss_dssp             TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTCH-HHHHHHTCCSSSEEEEESSCTTSCEECCS
T ss_pred             cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCCH-HHHHHcCCCccCEEEEEeCCCCeEEEeec
Confidence            36899999999999999999999999999998764   566666666544 4666677777888877  3333 344444


Q ss_pred             hhhhhHHhhh
Q 018726          117 RKRREELKAI  126 (351)
Q Consensus       117 ~~~~~~l~~~  126 (351)
                      ....+++...
T Consensus       109 ~~~~~~l~~~  118 (130)
T 2dml_A          109 GRTGEAIVDA  118 (130)
T ss_dssp             CCSHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            4444444433

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.16  E-value=8.7e-12  Score=100.04  Aligned_cols=66  Identities=11%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETL  110 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~  110 (351)
                      ++|+|+|+|||+||++|+.+.|.++++++++++.   +.++.|++|... .+.+.++...+|++.+  +|+.
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP-DFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-TTTTSSCSCSSCEEEEEETTEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccCH-HHHHHcCCCCCCEEEEEECCcE
Confidence            5899999999999999999999999999998654   667777766544 3455566666777765  5544

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=8.5e-12  Score=99.28  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC------Cceeeec--Ch
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM------PWLAVPF--DE  108 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~------~~~~~~~--~~  108 (351)
                      +...++++++|+|||+||++|+.+.|.+.++++++++.+  +.++.|+++.+. .+.+.++..      .+|++.+  +|
T Consensus        21 ~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~-~~~~~~~v~~~~~~~~~Pt~~~~~~G   97 (137)
T 2dj0_A           21 LERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVGRYT-DVSTRYKVSTSPLTKQLPTLILFQGG   97 (137)
T ss_dssp             HHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS--CEEEECCTTTCH-HHHHHTTCCCCSSSSCSSEEEEESSS
T ss_pred             HhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCccCH-HHHHHccCcccCCcCCCCEEEEEECC
Confidence            344567899999999999999999999999999997533  455555444433 456667766      7788776  66


Q ss_pred             HHHHHHhhh
Q 018726          109 TLHKKLRIR  117 (351)
Q Consensus       109 ~~~~~l~~~  117 (351)
                      +...++.+.
T Consensus        98 ~~~~~~~G~  106 (137)
T 2dj0_A           98 KEAMRRPQI  106 (137)
T ss_dssp             SEEEEESCB
T ss_pred             EEEEEecCc
Confidence            655455543

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.15  E-value=2.8e-11  Score=94.37  Aligned_cols=74  Identities=14%  Similarity=0.367  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      +.+||+++|.||++||++|+.+.|.+.++++++++    +.++.++++.+...+.+.++...+|++.+  +|+...++.|
T Consensus        34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G  109 (124)
T 1faa_A           34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG  109 (124)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEEEEEES
T ss_pred             hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEEEEEcC
Confidence            34799999999999999999999999999998763    56666666644446777778788888776  6665444444

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.14  E-value=1.6e-11  Score=96.55  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.++++   +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        38 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~  113 (128)
T 2o8v_B           38 KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAATKVGA  113 (128)
T ss_dssp             TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTCC-TTSGGGTCCSSSEEEEEETTEEEEEEESC
T ss_pred             hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHHcCCCccCEEEEEeCCEEEEEEcCC
Confidence            46899999999999999999999999999998754   667777766544 3555667777788877  67655455544


Q ss_pred             hhhhHHhhh
Q 018726          118 KRREELKAI  126 (351)
Q Consensus       118 ~~~~~l~~~  126 (351)
                      ...+++...
T Consensus       114 ~~~~~l~~~  122 (128)
T 2o8v_B          114 LSKGQLKEF  122 (128)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            333444433

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.14  E-value=6.3e-12  Score=99.37  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=63.8

Q ss_pred             CCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~w--C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .+++|+|+|||+|  |++|+++.|.+.+++++|.++.  +.++.|++|.+ ..++..++++.+||+.+  +|+...++.|
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvDe~-~~lA~~ygV~sIPTlilFk~G~~v~~~~G  109 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLEQS-EAIGDRFGAFRFPATLVFTGGNYRGVLNG  109 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHHHH-HHHHHHHTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECCCC-HHHHHHcCCccCCEEEEEECCEEEEEEec
Confidence            6678999999999  9999999999999999986531  34555555532 25777888888888887  8988888877


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      ...-.++...++
T Consensus       110 ~~~k~~l~~~i~  121 (140)
T 2qgv_A          110 IHPWAELINLMR  121 (140)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            555455555444

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.14  E-value=1.3e-10  Score=97.54  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------ChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~~~~~   99 (351)
                      |.+.+|+ +++++++||+++|.||++||++|+.++|.+.+++++++++   +.++.|++|.       +.+.+.++.+..
T Consensus        18 l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~~~~~~~~~~~   94 (188)
T 2cvb_A           18 LPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMAAFAEEH   94 (188)
T ss_dssp             EECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHHHHHHHH
T ss_pred             eecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCHHHHHHHHHHh
Confidence            8899999 9999999999999999999999999999999999999765   8899999863       334455555533


Q ss_pred             C
Q 018726          100 P  100 (351)
Q Consensus       100 ~  100 (351)
                      +
T Consensus        95 ~   95 (188)
T 2cvb_A           95 G   95 (188)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.14  E-value=3.6e-11  Score=90.49  Aligned_cols=80  Identities=19%  Similarity=0.362  Sum_probs=58.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+++|.||++||++|+.+.|.+.++++++++.   +.++.++++.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~   92 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP-GIATQYNIRSIPTVLFFKNGERKESIIGAV   92 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEEECC
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcchH-HHHHhCCCCcccEEEEEeCCeEEEEEecCC
Confidence            5899999999999999999999999999998764   566666666544 4666677777788776  666544444433


Q ss_pred             hhhHHh
Q 018726          119 RREELK  124 (351)
Q Consensus       119 ~~~~l~  124 (351)
                      ..+.+.
T Consensus        93 ~~~~l~   98 (105)
T 1fb6_A           93 PKSTLT   98 (105)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            333333

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.14  E-value=8.3e-11  Score=96.97  Aligned_cols=73  Identities=12%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             cce-ee-CCCCc-ccccCC-CCCeEEEEEe-CCCChhhhh-hhHHHHHHHHHHhhcCCcE-EEEEEEecCChhhHHHHHh
Q 018726           25 VEF-LL-SRQGK-VPLSSC-GGKTICLFFS-ANWCRPCKT-FTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        25 ~~~-l~-~~~g~-~~~~~~-~gk~v~v~F~-a~wC~~C~~-~~p~~~~l~~~~~~~~~~~-~iv~i~~d~~~~~~~~~~~   97 (351)
                      +++ |. +.+|+ ++++++ +||+++|.|| ++||++|+. .+|.+.++++++++.|  + +|+.|+.|. .+...++.+
T Consensus        10 P~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~~~~~~~~~   86 (167)
T 2wfc_A           10 PAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVND-SFVMDAWGK   86 (167)
T ss_dssp             CCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESSC-HHHHHHHHH
T ss_pred             CCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCC-HHHHHHHHH
Confidence            344 77 88999 999998 9999999987 999999999 9999999999998877  8 899999874 334555555


Q ss_pred             cCC
Q 018726           98 CMP  100 (351)
Q Consensus        98 ~~~  100 (351)
                      ..+
T Consensus        87 ~~~   89 (167)
T 2wfc_A           87 AHG   89 (167)
T ss_dssp             HTT
T ss_pred             hcC
Confidence            443

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.14  E-value=4.5e-11  Score=92.57  Aligned_cols=85  Identities=22%  Similarity=0.344  Sum_probs=62.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++++++.   +.++.|+++.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        28 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~G~  103 (121)
T 2i1u_A           28 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTNP-ETARNFQVVSIPTLILFKDGQPVKRIVGA  103 (121)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHhcCCCcCCEEEEEECCEEEEEecCC
Confidence            36899999999999999999999999999998654   667777766544 4666677777888876  66655555554


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                      ...+.+.+.++
T Consensus       104 ~~~~~l~~~l~  114 (121)
T 2i1u_A          104 KGKAALLRELS  114 (121)
T ss_dssp             CCHHHHHHHTC
T ss_pred             CCHHHHHHHHH
Confidence            44444544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.14  E-value=2.6e-11  Score=108.82  Aligned_cols=80  Identities=13%  Similarity=0.183  Sum_probs=59.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+||+|+|+||++||++|+.+.|.+.+++++++++   +.++.|++|.+. .+.+.+++..+|++.+  +|+...++.|.
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~   99 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAEQ-MIAAQFGLRAIPTVYLFQNGQPVDGFQGP   99 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTCH-HHHHTTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccCH-HHHHHcCCCCCCeEEEEECCEEEEEeeCC
Confidence            35899999999999999999999999999999864   566666666443 5667778888888877  66655555553


Q ss_pred             hhhhHH
Q 018726          118 KRREEL  123 (351)
Q Consensus       118 ~~~~~l  123 (351)
                      .....+
T Consensus       100 ~~~~~l  105 (287)
T 3qou_A          100 QPEEAI  105 (287)
T ss_dssp             CCHHHH
T ss_pred             CCHHHH
Confidence            333333

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.14  E-value=4.7e-11  Score=92.70  Aligned_cols=73  Identities=18%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ..+|+++|.||++||++|+.+.|.+.++++.+++.   +.++.|+++... .+.+.++...+|++.+  +++...++.+
T Consensus        19 ~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~g   93 (122)
T 3aps_A           19 QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAYP-QTCQKAGIKAYPSVKLYQYERAKKSIWE   93 (122)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEEEEGGGTEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCCH-HHHHHcCCCccceEEEEeCCCccceeec
Confidence            36899999999999999999999999999998764   566666666544 4666677777888876  4444444444

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.14  E-value=5.1e-11  Score=99.40  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      +++ |.+.+|+ +++++++||+++|.|| ++||++|+..+|.+.++++++++.|  ++|++|+.|.. +...++.+
T Consensus        32 P~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D~~-~~~~~~~~  104 (179)
T 3ixr_A           32 LNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRDSV-KSHDSFCA  104 (179)
T ss_dssp             HHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESCCH-HHHHHHHH
T ss_pred             CCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHHHHH
Confidence            445 8899999 9999999999999999 9999999999999999999999887  89999999853 34444444

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.14  E-value=3.2e-11  Score=93.46  Aligned_cols=81  Identities=19%  Similarity=0.381  Sum_probs=59.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+++|.||++||++|+.+.|.+.++++++.+.   +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~  105 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDHT-DLAIEYEVSAVPTVLAMKNGDVVDKFVGIK  105 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTTH-HHHHHTTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCH-HHHHHcCCCcccEEEEEeCCcEEEEEcCCC
Confidence            6899999999999999999999999999988654   667666666544 4666677777888877  666544444433


Q ss_pred             hhhHHhh
Q 018726          119 RREELKA  125 (351)
Q Consensus       119 ~~~~l~~  125 (351)
                      ..+.+..
T Consensus       106 ~~~~l~~  112 (119)
T 1w4v_A          106 DEDQLEA  112 (119)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            3334433

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.14  E-value=3.2e-11  Score=92.04  Aligned_cols=79  Identities=23%  Similarity=0.365  Sum_probs=58.0

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhhh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRKR  119 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~  119 (351)
                      +|+++|.||++||++|+.+.|.+.++++.+.+.   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|. .
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~   98 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVA-AVAEAAGITAMPTFHVYKDGVKADDLVGA-S   98 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTTH-HHHHHHTCCBSSEEEEEETTEEEEEEESC-C
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---eEEEEEECCchH-HHHHHcCCCcccEEEEEECCeEEEEEcCC-C
Confidence            899999999999999999999999999998753   566666666544 4666677777778766  66655445443 3


Q ss_pred             hhHHhh
Q 018726          120 REELKA  125 (351)
Q Consensus       120 ~~~l~~  125 (351)
                      .+++..
T Consensus        99 ~~~l~~  104 (112)
T 1ep7_A           99 QDKLKA  104 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            334433

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.14  E-value=5.9e-11  Score=96.77  Aligned_cols=70  Identities=16%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             eeCCCCc-ccccCCCCC-eEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           28 LLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk-~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      |.+.+|+ ++++++.|| +++|.|| ++||++|+.++|.+.++++++++.+  +++++|++|. .+...++.+..+
T Consensus        20 l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~~   92 (160)
T 1xvw_A           20 LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHKIWATQSG   92 (160)
T ss_dssp             EECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHHHHHHHHT
T ss_pred             eEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCCC-HHHHHHHHHhcC
Confidence            8899999 999999998 9999998 9999999999999999999997665  8999999974 334555544333

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.13  E-value=1.1e-11  Score=98.17  Aligned_cols=85  Identities=16%  Similarity=0.351  Sum_probs=56.9

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec----ChH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF----DET  109 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~----~~~  109 (351)
                      ..++..+||+++|+|||+||++|+.+.|.+.++++.+       .+.++.+|.+.. .+.+.+++..+|++.+    +|+
T Consensus        33 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-------~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           33 QVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-------YVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             HHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-------ECEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTE
T ss_pred             HHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-------CEEEEEEeccchHHHHHhcCCCCCCEEEEEEecCCC
Confidence            3355667999999999999999999999999877654       345555554433 4666677777777765    565


Q ss_pred             --HHHHHhhhhhhhHHhhhc
Q 018726          110 --LHKKLRIRKRREELKAID  127 (351)
Q Consensus       110 --~~~~l~~~~~~~~l~~~~  127 (351)
                        ...++.|. ..+++.+.+
T Consensus       106 g~~~~~~~G~-~~~~l~~~l  124 (133)
T 3cxg_A          106 WVLVHTVEGA-NQNDIEKAF  124 (133)
T ss_dssp             EEEEEEEESC-CHHHHHHHH
T ss_pred             eEEEEEEcCC-CHHHHHHHH
Confidence              34444443 334444433

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=6.6e-11  Score=92.53  Aligned_cols=84  Identities=12%  Similarity=0.299  Sum_probs=60.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      +++ ++|+||++||++|+.+.|.+.++++++++.+  +.++.|+++.+. .+.+.++...+|++.+  +|+ ..++.+..
T Consensus        22 ~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~-~~~~~G~~   96 (126)
T 1x5e_A           22 EGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQP-GLSGRFIINALPTIYHCKDGE-FRRYQGPR   96 (126)
T ss_dssp             SSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTE-EEECCSCC
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCCH-HHHHHcCCcccCEEEEEeCCe-EEEeecCC
Confidence            444 8999999999999999999999999987643  566666666444 4666677777788877  665 34555544


Q ss_pred             hhhHHhhhccc
Q 018726          119 RREELKAIDDS  129 (351)
Q Consensus       119 ~~~~l~~~~~~  129 (351)
                      ..+++...+..
T Consensus        97 ~~~~l~~~l~~  107 (126)
T 1x5e_A           97 TKKDFINFISD  107 (126)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            45555555443

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.13  E-value=1.3e-10  Score=110.07  Aligned_cols=84  Identities=19%  Similarity=0.295  Sum_probs=65.3

Q ss_pred             cCCCcceee--cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccC----CceEEEEEeCCCCHHHHHhhhccCCc
Q 018726          150 SRDHRKITV--SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTAN----HCFEVVLVSTDRDHKEFDLNHSIMPW  223 (351)
Q Consensus       150 ~~~g~~~~l--~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~----~~~~vv~v~~d~~~~~~~~~~~~~~~  223 (351)
                      .++...+..  ..-.+|++||+|||+||++|+.+.|.+.+++++++...+    +.+.++.|++|..             
T Consensus        27 ~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~-------------   93 (470)
T 3qcp_A           27 DLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE-------------   93 (470)
T ss_dssp             ECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-------------
T ss_pred             ECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-------------
Confidence            444444432  222458999999999999999999999999999874111    2589999998864             


Q ss_pred             eeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726          224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~  256 (351)
                                ..++++|+|.++||++++++.|.
T Consensus        94 ----------~~la~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           94 ----------VDLCRKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             ----------HHHHHHTTCCSSCEEEEEEESSC
T ss_pred             ----------HHHHHHcCCCccCeEEEEECCCc
Confidence                      68999999999999999966553

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.13  E-value=3.8e-11  Score=91.02  Aligned_cols=72  Identities=11%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .++|+++|.||++||++|+.+.|.+.++++++. .   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|
T Consensus        19 ~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   92 (107)
T 1gh2_A           19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-Q---AVFLEVDVHQCQ-GTAATNNISATPTFQFFRNKVRIDQYQG   92 (107)
T ss_dssp             TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-T---SEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-C---cEEEEEECccCH-HHHHhcCCCcccEEEEEECCeEEEEEeC
Confidence            468999999999999999999999999999883 2   566666666544 4666677777788776  6655444444

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.4e-11  Score=92.86  Aligned_cols=74  Identities=22%  Similarity=0.398  Sum_probs=53.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ..||+++|.||++||++|+.+.|.+.+++++++..+  +.++.++++.+. .+.+.++...+|++.+  +|+...++.|
T Consensus        19 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   94 (112)
T 3d6i_A           19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADENS-EISELFEISAVPYFIIIHKGTILKELSG   94 (112)
T ss_dssp             TTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEECS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccCH-HHHHHcCCCcccEEEEEECCEEEEEecC
Confidence            358999999999999999999999999999865443  566666666544 4566677777788776  6665555554

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.12  E-value=7.7e-12  Score=96.52  Aligned_cols=87  Identities=17%  Similarity=0.417  Sum_probs=61.2

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH--HHH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH--KKL  114 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~--~~l  114 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.+++.+.+  +.++.+|.+.. .+.+.++...+|++.+  +|+..  .++
T Consensus        22 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~   99 (120)
T 1mek_A           22 AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE--IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEY   99 (120)
T ss_dssp             HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCC--CBCEEEETTTCCSSHHHHTCCSSSEEEEEESSCSSSCEEC
T ss_pred             ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCc--EEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCCcCCcccc
Confidence            36899999999999999999999999999998765433  55555555433 4666677777888877  66544  444


Q ss_pred             hhhhhhhHHhhhcc
Q 018726          115 RIRKRREELKAIDD  128 (351)
Q Consensus       115 ~~~~~~~~l~~~~~  128 (351)
                      .|....+.+...++
T Consensus       100 ~g~~~~~~l~~~l~  113 (120)
T 1mek_A          100 TAGREADDIVNWLK  113 (120)
T ss_dssp             CCCSSHHHHHHHHH
T ss_pred             cCccCHHHHHHHHH
Confidence            45444444444443

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.12  E-value=1.9e-11  Score=100.71  Aligned_cols=68  Identities=16%  Similarity=0.204  Sum_probs=51.3

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH--hcCCceeeec
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF--KCMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~--~~~~~~~~~~  106 (351)
                      ..+++++||+++|+|||+|||||+.++|.+.++++.+. .   +.++.|++|.+.+...++.  .+..+|++.+
T Consensus        47 ~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~---v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-N---IELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-T---EEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             HHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-C---cEEEEEECCCCHHHHHHHHHcCCCCcCeEEE
Confidence            34566789999999999999999999999999998764 2   7788887775443333332  2566778766

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.12  E-value=6.6e-11  Score=93.98  Aligned_cols=84  Identities=19%  Similarity=0.344  Sum_probs=60.1

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec---ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF---DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~  116 (351)
                      ..+|+++|.||++||++|+.+.|.+.++++++++.   +.++.|++|.+. .+.+.++...+|++.+   +|+.. ++.+
T Consensus        36 ~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G  110 (136)
T 2l5l_A           36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKEQ-ELAGAFGIRSIPSILFIPMEGKPE-MAQG  110 (136)
T ss_dssp             CCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSCEEEEECSSSCCE-EEES
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCCH-HHHHHcCCCCCCEEEEECCCCcEE-EEeC
Confidence            35799999999999999999999999999998754   566666666544 4666677777788776   45443 3444


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      ....+.+.+.++
T Consensus       111 ~~~~~~l~~~l~  122 (136)
T 2l5l_A          111 AMPKASFKKAID  122 (136)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            444445544443

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.12  E-value=1.7e-10  Score=99.47  Aligned_cols=73  Identities=23%  Similarity=0.262  Sum_probs=60.5

Q ss_pred             Ccce-eeCC--CC--c-ccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH
Q 018726           24 GVEF-LLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (351)
Q Consensus        24 ~~~~-l~~~--~g--~-~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~   95 (351)
                      .+++ |.+.  +|  + ++++++ +||+++|+|| ++||++|+..+|.|.+++++|++.+  ++|++|++|.. +...++
T Consensus        31 aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D~~-~~~~~~  107 (221)
T 2c0d_A           31 AYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVDSV-YSHLAW  107 (221)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HHHHHH
T ss_pred             CCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCCCH-HHHHHH
Confidence            3444 7777  89  8 999999 9999999999 9999999999999999999998776  89999999753 344455


Q ss_pred             HhcC
Q 018726           96 FKCM   99 (351)
Q Consensus        96 ~~~~   99 (351)
                      .+..
T Consensus       108 ~~~~  111 (221)
T 2c0d_A          108 KNMP  111 (221)
T ss_dssp             HHSC
T ss_pred             HHHh
Confidence            4433

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.12  E-value=4.9e-11  Score=91.37  Aligned_cols=95  Identities=17%  Similarity=0.340  Sum_probs=66.3

Q ss_pred             eeCCCCc-cccc-CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726           28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        28 l~~~~g~-~~~~-~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (351)
                      +...+++ +... ...+++++|.||++||++|+.+.|.+.++++.+++.   +.++.+++|.+. .+.+.++...+|++.
T Consensus         9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-TTVKKYKVEGVPALR   84 (115)
T ss_dssp             EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-HHHHHTTCCSSSEEE
T ss_pred             eEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCCH-HHHHHcCCCceeEEE
Confidence            3444444 4322 247899999999999999999999999999998754   677777777554 456667777778887


Q ss_pred             c--ChHHHHHHhhhhhhhHHhhh
Q 018726          106 F--DETLHKKLRIRKRREELKAI  126 (351)
Q Consensus       106 ~--~~~~~~~l~~~~~~~~l~~~  126 (351)
                      +  +|+...++.|....+++...
T Consensus        85 ~~~~G~~~~~~~g~~~~~~l~~~  107 (115)
T 1thx_A           85 LVKGEQILDSTEGVISKDKLLSF  107 (115)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEcCCEEEEEecCCCCHHHHHHH
Confidence            7  66655555554344444443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.11  E-value=2.5e-10  Score=110.68  Aligned_cols=81  Identities=19%  Similarity=0.376  Sum_probs=66.2

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++...+...--.+++++|.|||+||++|+.+.|.+.+++++++.   .++.++.|+++..                   
T Consensus        18 ~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~---~~v~~~~vd~~~~-------------------   75 (504)
T 2b5e_A           18 KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDCTEN-------------------   75 (504)
T ss_dssp             ECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEETTTC-------------------
T ss_pred             ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcc---CCeEEEEEECCCC-------------------
Confidence            444444443223578999999999999999999999999999974   3689999998865                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                          ..++++|+|.++||++++ ++|++
T Consensus        76 ----~~l~~~~~v~~~Pt~~~~-~~g~~   98 (504)
T 2b5e_A           76 ----QDLCMEHNIPGFPSLKIF-KNSDV   98 (504)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTCT
T ss_pred             ----HHHHHhcCCCcCCEEEEE-eCCcc
Confidence                689999999999999999 56664

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.11  E-value=3.2e-11  Score=91.35  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=61.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+++|.||++||++|+.+.|.+.++++.+.++   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~   92 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDENP-KTAMRYRVMSIPTVILFKDGQPVEVLVGAQ   92 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCCH-hHHHhCCCCcCCEEEEEeCCcEeeeEeCCC
Confidence            5899999999999999999999999999998754   666666666544 4666677777788776  666554455544


Q ss_pred             hhhHHhhhc
Q 018726          119 RREELKAID  127 (351)
Q Consensus       119 ~~~~l~~~~  127 (351)
                      ..+++...+
T Consensus        93 ~~~~l~~~l  101 (109)
T 2yzu_A           93 PKRNYQAKI  101 (109)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            444444443

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.11  E-value=4.5e-11  Score=98.30  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +++ |.+.+|+ +++++++||+++|.||++| |++|+..+|.+.++++++  .+  ++++.|++|.. +...++.+..+
T Consensus        25 p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~--~~vv~is~d~~-~~~~~~~~~~~   98 (167)
T 2jsy_A           25 PDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GD--VNVYTISADLP-FAQARWCGANG   98 (167)
T ss_dssp             CCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SS--CEEEEEECSSG-GGTSCCGGGSS
T ss_pred             CceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CC--CEEEEEECCCH-HHHHHHHHhcC
Confidence            444 8899999 9999999999999999999 999999999999999999  33  89999999843 33444444443

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.11  E-value=4.6e-11  Score=96.73  Aligned_cols=63  Identities=21%  Similarity=0.423  Sum_probs=53.3

Q ss_pred             eeCCCC--------c-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH
Q 018726           28 LLSRQG--------K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (351)
Q Consensus        28 l~~~~g--------~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~   95 (351)
                      +.+.+|        + +++++++||+++|.||++||++|+.+.|.+.+++++  +   ++.++.|++|.+.+.+.++
T Consensus        19 l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~---~v~~v~v~~~~~~~~~~~~   90 (156)
T 1kng_A           19 LPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--K---RFQLVGINYKDAADNARRF   90 (156)
T ss_dssp             BCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T---TSEEEEEEESCCHHHHHHH
T ss_pred             eeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C---CeEEEEEECCCCHHHHHHH
Confidence            778888        8 999999999999999999999999999999998875  2   2789999988665544444

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.11  E-value=5.1e-11  Score=91.66  Aligned_cols=78  Identities=19%  Similarity=0.388  Sum_probs=57.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      +||+++|.||++||++|+.+.|.+.++++++++    +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~  103 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDESP-DIAKECEVTAMPTFVLGKDGQLIGKIIGAN  103 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTCH-HHHHHTTCCSBSEEEEEETTEEEEEEESSC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCH-HHHHHCCCCcccEEEEEeCCeEEEEEeCCC
Confidence            689999999999999999999999999998754    566666666544 4666677777778776  666554555433


Q ss_pred             hhhHHh
Q 018726          119 RREELK  124 (351)
Q Consensus       119 ~~~~l~  124 (351)
                       .+++.
T Consensus       104 -~~~l~  108 (114)
T 2oe3_A          104 -PTALE  108 (114)
T ss_dssp             -HHHHH
T ss_pred             -HHHHH
Confidence             33443

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.11  E-value=4.6e-11  Score=89.98  Aligned_cols=81  Identities=21%  Similarity=0.397  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ..++|+++|.||++||++|+.+.|.+.++++++++    +.++.+++|... .+.+.++...+|++.+  +|+...++.|
T Consensus        17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g   91 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ-DVASESEVKSMPTFQFFKKGQKVGEFSG   91 (105)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEEEEES
T ss_pred             hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhhH-HHHHHcCCCcCcEEEEEECCeEEEEEeC
Confidence            34799999999999999999999999999998753    466666666544 4666677777888887  6665555555


Q ss_pred             hhhhhHHhh
Q 018726          117 RKRREELKA  125 (351)
Q Consensus       117 ~~~~~~l~~  125 (351)
                      . ..+++.+
T Consensus        92 ~-~~~~l~~   99 (105)
T 3m9j_A           92 A-NKEKLEA   99 (105)
T ss_dssp             S-CHHHHHH
T ss_pred             C-CHHHHHH
Confidence            4 3344433

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.11  E-value=5.8e-11  Score=93.69  Aligned_cols=76  Identities=20%  Similarity=0.373  Sum_probs=54.4

Q ss_pred             eeCCCCc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceee
Q 018726           28 LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAV  104 (351)
Q Consensus        28 l~~~~g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~  104 (351)
                      +...++. +..... ++|+++|+||++||++|+.+.|.|.++++++++.+   .+.++.+|.+.. .+.+.+++..+|++
T Consensus         9 v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (133)
T 2dj3_A            9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK---DLVIAKMDATANDITNDQYKVEGFPTI   85 (133)
T ss_dssp             SEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS---SEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred             eEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC---CEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence            4455555 444333 58999999999999999999999999999997532   255555665433 24444666777888


Q ss_pred             ec
Q 018726          105 PF  106 (351)
Q Consensus       105 ~~  106 (351)
                      .+
T Consensus        86 ~~   87 (133)
T 2dj3_A           86 YF   87 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.10  E-value=1.2e-11  Score=97.99  Aligned_cols=94  Identities=18%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             eCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCC---hhhHHHHHhcCCc
Q 018726           29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD---ENGFEEHFKCMPW  101 (351)
Q Consensus        29 ~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~~~~~~~  101 (351)
                      .+.++. ..+++.+||+++|+||++||++|+.+.|.+   .++++.+++    +.++.|+++..   ...+.+.++...+
T Consensus        17 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~----~~~~~vd~~~~~~~~~~l~~~~~v~~~   92 (134)
T 2fwh_A           17 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD----TVLLQANVTANDAQDVALLKHLNVLGL   92 (134)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT----SEEEEEECTTCCHHHHHHHHHTTCCSS
T ss_pred             cCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC----cEEEEEeCCCCcchHHHHHHHcCCCCC
Confidence            344443 556666799999999999999999999999   899888752    67777777642   2246777777778


Q ss_pred             eeeec---ChHHH--HHHhhhhhhhHHhhh
Q 018726          102 LAVPF---DETLH--KKLRIRKRREELKAI  126 (351)
Q Consensus       102 ~~~~~---~~~~~--~~l~~~~~~~~l~~~  126 (351)
                      |++.+   +|+..  .++.|....+++.+.
T Consensus        93 Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~  122 (134)
T 2fwh_A           93 PTILFFDGQGQEHPQARVTGFMDAETFSAH  122 (134)
T ss_dssp             SEEEEECTTSCBCGGGCBCSCCCHHHHHHH
T ss_pred             CEEEEECCCCCEeeeeeeeeccCHHHHHHH
Confidence            88876   45544  345554444444443

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.10  E-value=2e-12  Score=98.28  Aligned_cols=80  Identities=11%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-----ChhhHHHHHhcCCceeeecChH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      +.+++..+|+++|+|||+||++|+++.|.|.++++.++         .|+++.     ....+++.+++..+|++.++|+
T Consensus         5 ~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i~G~   75 (106)
T 3kp8_A            5 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGPGTPQAQECTEAGITSYPTWIINGR   75 (106)
T ss_dssp             HHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCTTCTTSCCCHHHHHTTCCSSSEEEETTE
T ss_pred             hHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---------EEEEecccccchhHHHHHHcCCeEeCEEEECCE
Confidence            55666778999999999999999999999999886542         455552     2335778888888999888664


Q ss_pred             HHHHHhhhhhhhHHhhh
Q 018726          110 LHKKLRIRKRREELKAI  126 (351)
Q Consensus       110 ~~~~l~~~~~~~~l~~~  126 (351)
                         .+.|....+++..+
T Consensus        76 ---~~~G~~~~~~l~~~   89 (106)
T 3kp8_A           76 ---TYTGVRSLEALAVA   89 (106)
T ss_dssp             ---EEESCCCHHHHHHH
T ss_pred             ---EecCCCCHHHHHHH
Confidence               24444444444443

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.10  E-value=1.8e-11  Score=99.51  Aligned_cols=82  Identities=17%  Similarity=0.400  Sum_probs=59.4

Q ss_pred             CCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh----------hhHHH
Q 018726           30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE----------NGFEE   94 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~----------~~~~~   94 (351)
                      ...|+ +.++..+||+++|+|| |+||++|+.+.|.+   .++.+.+...   +.++.|+++.+.          ..+.+
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~~~~~~~~~~~~l~~  110 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNHQPEEQRQKNQELKA  110 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccCCChhhHhhHHHHHH
Confidence            34455 7777788999999999 99999999999999   7776655433   566666665432          24667


Q ss_pred             HHhcCCceeeec---ChHHHHHH
Q 018726           95 HFKCMPWLAVPF---DETLHKKL  114 (351)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~l  114 (351)
                      .+++..+|++.+   +|+...++
T Consensus       111 ~~~v~~~Pt~~~~d~~G~~~~~~  133 (154)
T 2ju5_A          111 QYKVTGFPELVFIDAEGKQLARM  133 (154)
T ss_dssp             HTTCCSSSEEEEECTTCCEEEEE
T ss_pred             HcCCCCCCEEEEEcCCCCEEEEe
Confidence            777777888877   45544444

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.10  E-value=3.7e-10  Score=108.85  Aligned_cols=70  Identities=19%  Similarity=0.410  Sum_probs=61.7

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.|||+||++|+.+.|.+.+++++++.    .+.++.|+++..                       ..++++|+|
T Consensus        21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~----~v~~~~vd~~~~-----------------------~~l~~~~~v   73 (481)
T 3f8u_A           21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG----IVPLAKVDCTAN-----------------------TNTCNKYGV   73 (481)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----TCCEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC----ceEEEEEECCCC-----------------------HHHHHhcCC
Confidence            48999999999999999999999999999973    488888888864                       689999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus        74 ~~~Ptl~~~-~~g~~~~~   90 (481)
T 3f8u_A           74 SGYPTLKIF-RDGEEAGA   90 (481)
T ss_dssp             CEESEEEEE-ETTEEEEE
T ss_pred             CCCCEEEEE-eCCceeee
Confidence            999999999 78866544

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.10  E-value=7.7e-11  Score=92.10  Aligned_cols=72  Identities=17%  Similarity=0.352  Sum_probs=55.0

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .+||+++|+||++||++|+.+.|.+.++++++.  +  +.++.|++|.+. .+.+.++...+|++.+  +|+...++.+
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G  109 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--N--VLFLKVDTDELK-SVASDWAIQAMPTFMFLKEGKILDKVVG  109 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--cEEEEEECccCH-HHHHHcCCCccCEEEEEECCEEEEEEeC
Confidence            369999999999999999999999999999875  2  566666665443 4666777777888876  6665444444

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.09  E-value=9.5e-11  Score=88.32  Aligned_cols=73  Identities=25%  Similarity=0.478  Sum_probs=55.5

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.++..   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g   92 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE-DIAMEYNISSMPTFVFLKNGVKVEEFAG   92 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccchH-HHHHHcCCCcccEEEEEcCCcEEEEEcC
Confidence            47899999999999999999999999999988643   666666666443 4666677777788776  6654444444

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.09  E-value=5.8e-11  Score=93.77  Aligned_cols=63  Identities=24%  Similarity=0.381  Sum_probs=51.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHH--HHHHHHhhcCCcEEEEEEEe---cCChhhHHHHHhc---CCceeeec
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLV--QLYDTLRTRGTELEVIFISF---DHDENGFEEHFKC---MPWLAVPF  106 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~--~l~~~~~~~~~~~~iv~i~~---d~~~~~~~~~~~~---~~~~~~~~  106 (351)
                      .+||+++|+||++||++|+.+.|.+.  ++++.+++.   +.++.|++   |.. ..+.+.++.   ..+|++.+
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~~~~-~~l~~~~~v~~~~~~Pt~~~   97 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNFDRN-LELSQAYGDPIQDGIPAVVV   97 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTTTSS-HHHHHHTTCGGGGCSSEEEE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcccch-HHHHHHhCCccCCccceEEE
Confidence            47999999999999999999999999  999998765   67888887   333 346667777   77777776

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.68  E-value=9.7e-12  Score=97.85  Aligned_cols=93  Identities=16%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec-
Q 018726           33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF-  106 (351)
Q Consensus        33 g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~-  106 (351)
                      .+ +.++..+||+++|+||++||++|+.+.|.+   .++++.+++.   +.++.|+++.++ ..+.+.+++..+|++.+ 
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPEGQELARRYRVPGTPTFVFL   85 (130)
Confidence            44 777788999999999999999999999999   8888877653   566666665332 34666677777788776 


Q ss_pred             ---ChHH--HHHHhhhhhhhHHhhhcc
Q 018726          107 ---DETL--HKKLRIRKRREELKAIDD  128 (351)
Q Consensus       107 ---~~~~--~~~l~~~~~~~~l~~~~~  128 (351)
                         +|..  ..++.|....+.+...++
T Consensus        86 d~~~G~~~~~~~~~G~~~~~~l~~~l~  112 (130)
T 2lst_A           86 VPKAGAWEEVGRLFGSRPRAEFLKELR  112 (130)
Confidence               2444  445665444444444443

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.09  E-value=6.9e-11  Score=91.76  Aligned_cols=81  Identities=21%  Similarity=0.418  Sum_probs=59.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|.||++||++|+.+.|.+.++++++.+    +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|..
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~  107 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDELK-PIAEQFSVEAMPTFLFMKEGDVKDRVVGAI  107 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESSC
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCCH-HHHHHcCCCcccEEEEEeCCEEEEEEeCcC
Confidence            689999999999999999999999999998753    566666666544 4666677777788776  666555555544


Q ss_pred             hhhHHhhhc
Q 018726          119 RREELKAID  127 (351)
Q Consensus       119 ~~~~l~~~~  127 (351)
                       .+++...+
T Consensus       108 -~~~l~~~l  115 (122)
T 2vlu_A          108 -KEELTAKV  115 (122)
T ss_dssp             -HHHHHHHH
T ss_pred             -HHHHHHHH
Confidence             44444433

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.09  E-value=2.8e-10  Score=97.59  Aligned_cols=72  Identities=22%  Similarity=0.254  Sum_probs=60.4

Q ss_pred             cCcce-eeCC--CC--c-ccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHH
Q 018726           23 EGVEF-LLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE   94 (351)
Q Consensus        23 ~~~~~-l~~~--~g--~-~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~   94 (351)
                      ..+++ |.+.  +|  + ++++++ +||+++|.|| ++||++|+.++|.+.+++++|++.+  +++++|++|. .+...+
T Consensus        26 ~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~~~  102 (213)
T 2i81_A           26 EAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVDS-KYTHLA  102 (213)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHH
T ss_pred             cCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHH
Confidence            33445 7777  89  7 999999 9999999999 9999999999999999999998766  8999999984 334555


Q ss_pred             HHh
Q 018726           95 HFK   97 (351)
Q Consensus        95 ~~~   97 (351)
                      +.+
T Consensus       103 ~~~  105 (213)
T 2i81_A          103 WKK  105 (213)
T ss_dssp             HHS
T ss_pred             HHH
Confidence            554

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.09  E-value=8.1e-11  Score=90.02  Aligned_cols=80  Identities=19%  Similarity=0.287  Sum_probs=59.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      +||+++|.||++||++|+.+.|.+.++++++++    +.++.|+++.+. .+.+.++...+|++.+  +|+...++.|. 
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-   98 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVS-EVTEKENITSMPTFKVYKNGSSVDTLLGA-   98 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTH-HHHHHTTCCSSSEEEEEETTEEEEEEESC-
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC----CEEEEEECCCCH-HHHHHcCCCcccEEEEEECCcEEEEEeCC-
Confidence            789999999999999999999999999998752    567777766544 4666677777888776  66655455554 


Q ss_pred             hhhHHhhh
Q 018726          119 RREELKAI  126 (351)
Q Consensus       119 ~~~~l~~~  126 (351)
                      ..+++...
T Consensus        99 ~~~~l~~~  106 (112)
T 1syr_A           99 NDSALKQL  106 (112)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            44444443

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.08  E-value=1.6e-10  Score=95.01  Aligned_cols=80  Identities=24%  Similarity=0.367  Sum_probs=61.3

Q ss_pred             Cceeeecc-cCcce-eeCC--CCc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           15 DFLTVLAS-EGVEF-LLSR--QGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        15 ~~~~~~~~-~~~~~-l~~~--~g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      ....+..| ..+++ |.+.  +|+ +.++.+ +||+++|+||++||++|+.++|.+.+++++    +  +.++.|++|.+
T Consensus        18 ~~~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~   91 (168)
T 2b1k_A           18 NLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDD   91 (168)
T ss_dssp             -CCCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCC
T ss_pred             cccccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCC
Confidence            33444444 33344 7777  888 888874 899999999999999999999999998875    3  78999999988


Q ss_pred             hhhHHHHHhcCC
Q 018726           89 ENGFEEHFKCMP  100 (351)
Q Consensus        89 ~~~~~~~~~~~~  100 (351)
                      .+.+.++.+..+
T Consensus        92 ~~~~~~~~~~~~  103 (168)
T 2b1k_A           92 RQKAISWLKELG  103 (168)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHcC
Confidence            777666655443

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.08  E-value=2.5e-10  Score=98.54  Aligned_cols=57  Identities=25%  Similarity=0.333  Sum_probs=51.9

Q ss_pred             CCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           30 SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      +.+|+ +++++++||+++|.||+ +||++|+..+|.+.+++++|++.+  ++|++|++|..
T Consensus        56 d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~~  114 (222)
T 3ztl_A           56 NGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDSQ  114 (222)
T ss_dssp             TTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence            44568 99999999999999997 999999999999999999998776  89999999863

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.08  E-value=4.5e-11  Score=103.28  Aligned_cols=85  Identities=21%  Similarity=0.368  Sum_probs=63.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|+|||+||++|+.+.|.+.++++++++.   +.++.|++|.+. .+.+.+++..+|++.+  +|+...++.|..
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~  104 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAATKVGAL  104 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCT-TTGGGGTCCSBSEEEEEETTEEEEEEESCC
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCeEEEEecccc
Confidence            6899999999999999999999999999998765   667777776544 3455677777888777  666555566554


Q ss_pred             hhhHHhhhccc
Q 018726          119 RREELKAIDDS  129 (351)
Q Consensus       119 ~~~~l~~~~~~  129 (351)
                      ....+.+.+..
T Consensus       105 ~~~~l~~~l~~  115 (222)
T 3dxb_A          105 SKGQLKEFLDA  115 (222)
T ss_dssp             CHHHHHHHHHH
T ss_pred             ChHHHHHHHHh
Confidence            55555554443

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.07  E-value=3.1e-11  Score=103.33  Aligned_cols=96  Identities=11%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             eCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec-
Q 018726           29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-  106 (351)
Q Consensus        29 ~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~-  106 (351)
                      .+.++. +.....+||+++|.||++||++|+.+.|.+.++++.+++.   +.++.|+++... .+.+.+++..+|++.+ 
T Consensus       100 ~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~  175 (210)
T 3apq_A          100 ITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDDR-MLCRMKGVNSYPSLFIF  175 (210)
T ss_dssp             EECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-HHHHHTTCCSSSEEEEE
T ss_pred             EEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCccH-HHHHHcCCCcCCeEEEE
Confidence            334444 3333357999999999999999999999999999998754   566666665443 4666677777888876 


Q ss_pred             -ChHHHHHHhhhhhhhHHhhhcc
Q 018726          107 -DETLHKKLRIRKRREELKAIDD  128 (351)
Q Consensus       107 -~~~~~~~l~~~~~~~~l~~~~~  128 (351)
                       +|....++.|....+.+...+.
T Consensus       176 ~~G~~~~~~~G~~~~~~l~~~i~  198 (210)
T 3apq_A          176 RSGMAAVKYNGDRSKESLVAFAM  198 (210)
T ss_dssp             CTTSCCEECCSCCCHHHHHHHHH
T ss_pred             ECCCceeEecCCCCHHHHHHHHH
Confidence             6665555555444445544443

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.07  E-value=4e-11  Score=93.20  Aligned_cols=82  Identities=20%  Similarity=0.332  Sum_probs=59.8

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.+++.+  +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        31 ~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~  107 (121)
T 2j23_A           31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQS-QIAQEVGIRAMPTFVFFKNGQKIDTVVGA  107 (121)
T ss_dssp             SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTCH-HHHHHHTCCSSSEEEEEETTEEEEEEESS
T ss_pred             cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCCH-HHHHHcCCCcccEEEEEECCeEEeeEcCC
Confidence            478999999999999999999999999999887653  566666666544 4666677777788776  66655455544


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                       ..+++.+
T Consensus       108 -~~~~l~~  114 (121)
T 2j23_A          108 -DPSKLQA  114 (121)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             3344433

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.07  E-value=3e-10  Score=95.32  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=58.4

Q ss_pred             cce-eeCC-CC--c-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           25 VEF-LLSR-QG--K-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        25 ~~~-l~~~-~g--~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      +++ |.+. +|  + +++++++||+++|.||+ +||++|+..+|.|.++++++++.+  +++++|++|.. +...++.+.
T Consensus         8 P~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~~-~~~~~~~~~   84 (186)
T 1n8j_A            8 KPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTHKAWHSS   84 (186)
T ss_dssp             CCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HHHHHHHHH
T ss_pred             CCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HHHHHHHHH
Confidence            344 6777 58  7 99999999999999996 999999999999999999998876  89999999853 334444443

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.07  E-value=2.9e-10  Score=93.16  Aligned_cols=70  Identities=21%  Similarity=0.418  Sum_probs=59.4

Q ss_pred             eCCCC--c-ccccC-CCCCeEEEEEe-CCCChhhh-hhhHHHHHHHHHHhhcCCcEE-EEEEEecCChhhHHHHHhcCCc
Q 018726           29 LSRQG--K-VPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHFKCMPW  101 (351)
Q Consensus        29 ~~~~g--~-~~~~~-~~gk~v~v~F~-a~wC~~C~-~~~p~~~~l~~~~~~~~~~~~-iv~i~~d~~~~~~~~~~~~~~~  101 (351)
                      .+.+|  + +++++ ++||+++|.|| ++||++|+ ..+|.+.++++++++.|  ++ ++.|+.|. .+...++.+..+.
T Consensus        18 ~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d~-~~~~~~~~~~~~~   94 (162)
T 1tp9_A           18 FDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVND-PFVMKAWAKSYPE   94 (162)
T ss_dssp             ECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESSC-HHHHHHHHHTCTT
T ss_pred             ecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-HHHHHHHHHhcCC
Confidence            37899  8 99999 89999999999 89999999 99999999999998776  88 99999984 4456666655543

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.06  E-value=9.3e-11  Score=91.79  Aligned_cols=72  Identities=13%  Similarity=0.276  Sum_probs=55.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .++|+++|.||++||++|+.+.|.+.++++++.  +  +.++.|++|.+. .+.+.++...+|++.+  +|+...++.+
T Consensus        35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~d~~~-~l~~~~~v~~~Pt~~i~~~G~~~~~~~G  108 (125)
T 1r26_A           35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--T--VKFAKVDADNNS-EIVSKCRVLQLPTFIIARSGKMLGHVIG  108 (125)
T ss_dssp             HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--T--SEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--C--CEEEEEECCCCH-HHHHHcCCCcccEEEEEeCCeEEEEEeC
Confidence            478999999999999999999999999999873  2  567776666544 4666677777788776  6665544444

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.06  E-value=4e-10  Score=94.90  Aligned_cols=69  Identities=22%  Similarity=0.243  Sum_probs=58.5

Q ss_pred             eeCC--CC--c-ccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           28 LLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~--~g--~-~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      |.+.  +|  + ++++++ +||+++|.|| ++||++|+.++|.+.++++++++.+  +++++|++|. .+...++.+..
T Consensus        11 l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~~~~~~~~   86 (192)
T 2h01_A           11 AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDS-KFTHLAWKKTP   86 (192)
T ss_dssp             EEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHHHHTSC
T ss_pred             eEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeCC-HHHHHHHHHhH
Confidence            6676  89  8 999999 9999999999 9999999999999999999998776  8999999984 33455554433

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.06  E-value=2.2e-11  Score=94.22  Aligned_cols=68  Identities=7%  Similarity=0.016  Sum_probs=49.9

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      +++|+|+|||+||++|+.+.|.++++++++.+    +.++.|++|.  .  .+.+++...|++.+  +|+...++.|.
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~----v~f~kvd~d~--~--~~~~~v~~~PT~~~fk~G~~v~~~~G~   92 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKAIVNS--C--IQHYHDNCLPTIFVYKNGQIEAKFIGI   92 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT----SEEEEEEGGG--T--STTCCGGGCSEEEEEETTEEEEEEEST
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----CEEEEEEhHH--h--HHHCCCCCCCEEEEEECCEEEEEEeCh
Confidence            55999999999999999999999999998753    4555555543  3  23445555566665  88777776653

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.06  E-value=3.1e-10  Score=94.01  Aligned_cols=75  Identities=21%  Similarity=0.318  Sum_probs=58.3

Q ss_pred             cCcce-ee-CCCCc-ccccC-CCCCeEEEEE-eCCCChhhh-hhhHHHHHHHHHHhhcCCcEEEEE-EEecCChhhHHHH
Q 018726           23 EGVEF-LL-SRQGK-VPLSS-CGGKTICLFF-SANWCRPCK-TFTPQLVQLYDTLRTRGTELEVIF-ISFDHDENGFEEH   95 (351)
Q Consensus        23 ~~~~~-l~-~~~g~-~~~~~-~~gk~v~v~F-~a~wC~~C~-~~~p~~~~l~~~~~~~~~~~~iv~-i~~d~~~~~~~~~   95 (351)
                      ..+++ |. +.+|+ +++++ ++||+++|.| |++||++|+ ..+|.|.+++++|++.|  ++++. |+.|. .....++
T Consensus        20 ~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D~-~~~~~~f   96 (173)
T 3mng_A           20 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVND-AFVTGEW   96 (173)
T ss_dssp             BCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-HHHHHHH
T ss_pred             CCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCCC-HHHHHHH
Confidence            44555 77 89999 99999 6999766655 599999999 59999999999999887  78886 88885 3344555


Q ss_pred             HhcCC
Q 018726           96 FKCMP  100 (351)
Q Consensus        96 ~~~~~  100 (351)
                      .+..+
T Consensus        97 ~~~~~  101 (173)
T 3mng_A           97 GRAHK  101 (173)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            54443

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.06  E-value=1.8e-10  Score=94.57  Aligned_cols=71  Identities=20%  Similarity=0.093  Sum_probs=58.9

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +++ |.+.+|+ +++++++||+++|.|| ++||++|+..+|.+.++++++  .+  +++++|++|. .+...++.+..+
T Consensus        24 P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~~~~~~   97 (165)
T 1q98_A           24 ENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISADL-PFAQARFCGAEG   97 (165)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESSC-HHHHTTCTTTTT
T ss_pred             CCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCCC-HHHHHHHHHHcC
Confidence            444 8899999 9999999999999999 799999999999999999998  34  8999999874 334555555444

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.06  E-value=1.5e-10  Score=92.31  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=59.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +...+++ +...-.+++.++|.||++||++|+.+.|.+.++++++++.   +.++.|+++.+. .+.+.++...+|++.+
T Consensus        35 v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEHP-GLAARYGVRSVPTLVL  110 (140)
T ss_dssp             --------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             cccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-HHHHHCCCCccCEEEE
Confidence            4444454 4433233333999999999999999999999999998754   666666666544 4666677777888776


Q ss_pred             --ChHHHHHHhhhhhhhHHhhhc
Q 018726          107 --DETLHKKLRIRKRREELKAID  127 (351)
Q Consensus       107 --~~~~~~~l~~~~~~~~l~~~~  127 (351)
                        +|+...++.|....+.+..++
T Consensus       111 ~~~G~~~~~~~G~~~~~~l~~~i  133 (140)
T 1v98_A          111 FRRGAPVATWVGASPRRVLEERL  133 (140)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHH
T ss_pred             EeCCcEEEEEeCCCCHHHHHHHH
Confidence              776555555544444444443

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.06  E-value=5.9e-11  Score=88.92  Aligned_cols=81  Identities=20%  Similarity=0.353  Sum_probs=59.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+++|.||++||++|+.+.|.+.++++.+++    +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        14 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~   88 (104)
T 2e0q_A           14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDENP-DIAARYGVMSLPTVIFFKDGEPVDEIIGA   88 (104)
T ss_dssp             HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-HHHHHTTCCSSCEEEEEETTEEEEEEESC
T ss_pred             hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCCH-HHHHhCCccccCEEEEEECCeEhhhccCC
Confidence            3689999999999999999999999999998754    567777766554 4666677777888877  66655455544


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                      ...+.+..
T Consensus        89 ~~~~~l~~   96 (104)
T 2e0q_A           89 VPREEIEI   96 (104)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            33344433

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.06  E-value=3.3e-11  Score=99.69  Aligned_cols=90  Identities=10%  Similarity=0.078  Sum_probs=59.0

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChhh--------------------
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENG--------------------   91 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~~--------------------   91 (351)
                      +.++..+||+|+|+|||+||++|+.+.+.+   .++.+.+++.   +.++.|++|...+.                    
T Consensus        40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~  116 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD  116 (172)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence            444556899999999999999999985444   5555555543   67777777654311                    


Q ss_pred             -----HHHHHhcCCceeeec---ChHHHHHHhhhhh-hhHHhhhc
Q 018726           92 -----FEEHFKCMPWLAVPF---DETLHKKLRIRKR-REELKAID  127 (351)
Q Consensus        92 -----~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-~~~l~~~~  127 (351)
                           ..+.+++..+|++.+   +|+...++.|... .+++...+
T Consensus       117 ~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l  161 (172)
T 3f9u_A          117 KWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFL  161 (172)
T ss_dssp             HHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHH
T ss_pred             hhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHH
Confidence                 045677777888776   5665555555444 44444433

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.06  E-value=4.6e-10  Score=92.37  Aligned_cols=73  Identities=30%  Similarity=0.461  Sum_probs=59.2

Q ss_pred             eeCCCCcccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhcC-CcEEEEEEEecCC---hhhHHHHHhcCC
Q 018726           28 LLSRQGKVPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFKCMP  100 (351)
Q Consensus        28 l~~~~g~~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~-~~~~iv~i~~d~~---~~~~~~~~~~~~  100 (351)
                      |.+.+|.+++++++||+++|.||++||++ |+.++|.+.++++++++.+ .++++++|++|.+   .+.+.++.+.++
T Consensus        21 l~~~~g~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~   98 (172)
T 2k6v_A           21 LEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFH   98 (172)
T ss_dssp             EECSSSEEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHC
T ss_pred             EEcCCCCCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhC
Confidence            77777778888999999999999999998 9999999999999987642 2389999999853   344666655444

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=2.7e-11  Score=95.22  Aligned_cols=90  Identities=12%  Similarity=0.243  Sum_probs=61.3

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCceeeec---C
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLAVPF---D  107 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~~~---~  107 (351)
                      +.++..+||+++|.||++||++|+.+.|.+   ..+.+.++..   +.++.|+++.+ ...+.+.++...+|++.+   +
T Consensus        20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~   96 (130)
T 2kuc_A           20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSS   96 (130)
T ss_dssp             HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTT
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcchHHHHHHcCCCCCCEEEEECCC
Confidence            555556899999999999999999999999   7777766544   44555555432 335777788778888876   4


Q ss_pred             hHHHHHHhhhhhhhHHhhhc
Q 018726          108 ETLHKKLRIRKRREELKAID  127 (351)
Q Consensus       108 ~~~~~~l~~~~~~~~l~~~~  127 (351)
                      |+...++.|....+++.+.+
T Consensus        97 G~~~~~~~G~~~~~~l~~~l  116 (130)
T 2kuc_A           97 GEVVYRLVGAEDAPELLKKV  116 (130)
T ss_dssp             SCEEEEEESCCCHHHHHHHH
T ss_pred             CcEEEEecCCCCHHHHHHHH
Confidence            55444455544444444443

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.05  E-value=3.9e-10  Score=96.58  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             CCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           31 RQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        31 ~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      .+|+ +++++++||+++|+|| ++||++|+..+|.|.+++++|++.+  +++++|++|.. +...++.+.
T Consensus        36 ~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D~~-~~~~~~~~~  102 (211)
T 2pn8_A           36 GEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQ-FTHLAWINT  102 (211)
T ss_dssp             TEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHHHHHHTS
T ss_pred             CCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HHHHHHHHH
Confidence            3567 9999999999999999 9999999999999999999998766  89999999753 345555543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.05  E-value=2.1e-10  Score=94.81  Aligned_cols=71  Identities=11%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +++ |.+.+|+ +++++++||+++|.|| ++||++|+..+|.+.++++++  .+  +++++|++|. .+...++.+..+
T Consensus        28 P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~~~~~~  101 (171)
T 2yzh_A           28 PEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EG--VDVTVVSMDL-PFAQKRFCESFN  101 (171)
T ss_dssp             CCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHHHHHTT
T ss_pred             CceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CC--ceEEEEeCCC-HHHHHHHHHHcC
Confidence            344 8899999 9999999999999999 799999999999999999988  33  8999999985 334555555443

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.04  E-value=1.4e-10  Score=95.40  Aligned_cols=71  Identities=17%  Similarity=0.078  Sum_probs=57.4

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      ..+++ |.+.+|+ +++++++||+++|.|| ++||++|+..+|.+.+++++   .+  +++++|+.|. .+...++.+..
T Consensus        25 ~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~--~~vv~is~d~-~~~~~~~~~~~   98 (166)
T 3p7x_A           25 FAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EE--GIVLTISADL-PFAQKRWCASA   98 (166)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TT--SEEEEEESSC-HHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CC--CEEEEEECCC-HHHHHHHHHHc
Confidence            33445 8899999 9999999999999999 78999999999999999887   33  7899999875 33455554433

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.04  E-value=6.6e-10  Score=94.41  Aligned_cols=70  Identities=27%  Similarity=0.337  Sum_probs=57.9

Q ss_pred             cce-eeCC--CC--c-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           25 VEF-LLSR--QG--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        25 ~~~-l~~~--~g--~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      +++ +.+.  +|  + +++++++||+++|.|| ++||++|+.++|.+.++++++++.+  ++++.|++|.. +...++.+
T Consensus        13 P~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~D~~-~~~~~~~~   89 (202)
T 1uul_A           13 PDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSE-YSHLAWTS   89 (202)
T ss_dssp             CCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHHHHHHH
T ss_pred             CCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCH-HHHHHHHH
Confidence            344 5555  67  7 9999999999999999 9999999999999999999998766  89999999853 34455544

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.04  E-value=3.3e-10  Score=104.70  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=60.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHH-------HHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQ-------LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  234 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~-------l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~  234 (351)
                      ++++++|.|||+||+ |+.+.|.       ++++++.++.   .++.++.|+++..                       .
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~---~~v~~~~Vd~~~~-----------------------~   79 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEH---KDIGFVMVDAKKE-----------------------A   79 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGG---SSEEEEEEETTTT-----------------------H
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhh---cCcEEEEEeCCCC-----------------------H
Confidence            478999999999999 9989888       8888888874   4789999988864                       6


Q ss_pred             HHHHHcCcCceeeEEEECCCCceE
Q 018726          235 DLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       235 ~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      .++++|+|.++||++++ ++|++.
T Consensus        80 ~l~~~~~v~~~Pt~~~~-~~g~~~  102 (350)
T 1sji_A           80 KLAKKLGFDEEGSLYVL-KGDRTI  102 (350)
T ss_dssp             HHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             HHHHhcCCCccceEEEE-ECCcEE
Confidence            89999999999999999 788754

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.03  E-value=4.8e-10  Score=94.72  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             C--c-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           33 G--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        33 g--~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      |  + +++++++||+++|.|| ++||++|+.++|.+.++++++++.+  +++++|++|. .+...++.+
T Consensus        33 G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~-~~~~~~~~~   98 (195)
T 2bmx_A           33 DYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDS-EFAHFQWRA   98 (195)
T ss_dssp             GGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHH
T ss_pred             CCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHH
Confidence            7  7 9999999999999999 9999999999999999999998765  8999999986 334444444

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.03  E-value=8e-11  Score=89.85  Aligned_cols=83  Identities=17%  Similarity=0.221  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|.||++||++|+.+.|.+.++++.+.+    +.++.++++... .+.+.++...+|++.+  +|+...++.|..
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~~   92 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ----VAISSVDSEARP-ELMKELGFERVPTLVFIRDGKVAKVFSGIM   92 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTT----SCEEEEEGGGCH-HHHHHTTCCSSCEEEEEESSSEEEEEESCC
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCC----cEEEEEcCcCCH-HHHHHcCCcccCEEEEEECCEEEEEEcCCC
Confidence            579999999999999999999999999887642    567777766544 4666677777888877  777666666644


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+++...+.
T Consensus        93 ~~~~l~~~~~  102 (110)
T 2l6c_A           93 NPRELQALYA  102 (110)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4455544433

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.03  E-value=4.9e-10  Score=91.80  Aligned_cols=69  Identities=19%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             Ccce-eeCCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        24 ~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      .+++ |.+.+|+ +++++++||+++|.||+ +||++|+..+|.+.++++++  .+  +++++|++|.. +...++.+
T Consensus        22 ~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~--v~vv~is~d~~-~~~~~~~~   93 (163)
T 1psq_A           22 ALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DN--TVVLTVSMDLP-FAQKRWCG   93 (163)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSCH-HHHHHHHH
T ss_pred             CCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--cEEEEEECCCH-HHHHHHHH
Confidence            3444 8899999 99999999999999995 99999999999999999988  33  89999999853 33444433

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.03  E-value=1.1e-10  Score=89.91  Aligned_cols=74  Identities=19%  Similarity=0.302  Sum_probs=55.1

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHH
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKL  114 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  114 (351)
                      +++.+||+++|.||++||++|+.+.|.+.++++++   +  +.++.|++|... .+.+.++...+|++.+  +|+...++
T Consensus        28 l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~--~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~  101 (117)
T 2xc2_A           28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---D--AIFVKVDVDKLE-ETARKYNISAMPTFIAIKNGEKVGDV  101 (117)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---S--SEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             HHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---C--cEEEEEECCccH-HHHHHcCCCccceEEEEeCCcEEEEE
Confidence            34458999999999999999999999999998876   2  556666665443 4666677777788776  66554444


Q ss_pred             hh
Q 018726          115 RI  116 (351)
Q Consensus       115 ~~  116 (351)
                      .|
T Consensus       102 ~G  103 (117)
T 2xc2_A          102 VG  103 (117)
T ss_dssp             ES
T ss_pred             eC
Confidence            44

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.03  E-value=1.1e-10  Score=92.97  Aligned_cols=82  Identities=24%  Similarity=0.382  Sum_probs=59.2

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+||+++|.||++||++|+.+.|.+.++++++.+    +.++.|++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~  118 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYPS----LMFLVIDVDELS-DFSASWEIKATPTFFFLRDGQQVDKLVGA  118 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTSH-HHHHHTTCCEESEEEEEETTEEEEEEESC
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEeCcccH-HHHHHcCCCcccEEEEEcCCeEEEEEeCC
Confidence            4699999999999999999999999999998742    567777776544 4666667666777766  66655555544


Q ss_pred             hhhhHHhhhc
Q 018726          118 KRREELKAID  127 (351)
Q Consensus       118 ~~~~~l~~~~  127 (351)
                       ..+++...+
T Consensus       119 -~~~~l~~~l  127 (139)
T 3d22_A          119 -NKPELHKKI  127 (139)
T ss_dssp             -CHHHHHHHH
T ss_pred             -CHHHHHHHH
Confidence             334444433

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.03  E-value=9.2e-11  Score=84.73  Aligned_cols=76  Identities=13%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHHHHHHhhhhhhhH
Q 018726           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREE  122 (351)
Q Consensus        43 k~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  122 (351)
                      .++++.||++||++|+.+.|.+.++++++++.   +.++.+++|.+. .+.+.++...+|++.++|+.  ++.|....++
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~G~~--~~~G~~~~~~   76 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-QKAMEYGIMAVPTIVINGDV--EFIGAPTKEA   76 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC-CTTTSTTTCCSSEEEETTEE--ECCSSSSSHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-HHHHHCCCcccCEEEECCEE--eeecCCCHHH
Confidence            57899999999999999999999999988643   778788777654 34455667778888886653  3444333333


Q ss_pred             Hh
Q 018726          123 LK  124 (351)
Q Consensus       123 l~  124 (351)
                      +.
T Consensus        77 l~   78 (85)
T 1fo5_A           77 LV   78 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.03  E-value=6.8e-12  Score=103.24  Aligned_cols=79  Identities=14%  Similarity=0.368  Sum_probs=56.8

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc--CCceeeec---ChH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MPWLAVPF---DET  109 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~~~~~~~---~~~  109 (351)
                      +.....+||+|+|+|||+||++|+.+.|.+.++++.+...   +.++.|++|.+.+.....+..  ..+|++.+   +|+
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK  115 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCC
Confidence            5555568999999999999999999999999987766543   468888888765423333333  45777765   566


Q ss_pred             HHHHHhh
Q 018726          110 LHKKLRI  116 (351)
Q Consensus       110 ~~~~l~~  116 (351)
                      ...++.+
T Consensus       116 ~~~~~~G  122 (164)
T 1sen_A          116 VHPEIIN  122 (164)
T ss_dssp             BCTTCCC
T ss_pred             EEEEEeC
Confidence            5555555

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.03  E-value=2.7e-10  Score=98.35  Aligned_cols=69  Identities=19%  Similarity=0.337  Sum_probs=57.1

Q ss_pred             cCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          161 LAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       161 ~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      .++++++++||++ ||++|+.+.|.+.++++. .    +++.++.|+++...                     ...++++
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~----~~v~~~~vd~~~~~---------------------~~~~~~~   73 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T----DKLSYEIVDFDTPE---------------------GKELAKR   73 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C----TTEEEEEEETTSHH---------------------HHHHHHH
T ss_pred             cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C----CceEEEEEeCCCcc---------------------cHHHHHH
Confidence            3567889999999 999999999999998753 2    67889999888521                     3689999


Q ss_pred             cCcCceeeEEEECCCCc
Q 018726          240 FNIKGIPALVLIGPDGK  256 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~  256 (351)
                      |+|.++||++++ ++|+
T Consensus        74 ~~v~~~Pt~~~~-~~g~   89 (226)
T 1a8l_A           74 YRIDRAPATTIT-QDGK   89 (226)
T ss_dssp             TTCCSSSEEEEE-ETTB
T ss_pred             cCCCcCceEEEE-cCCc
Confidence            999999999999 5664

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.03  E-value=1.6e-10  Score=86.66  Aligned_cols=73  Identities=21%  Similarity=0.440  Sum_probs=55.3

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      +.+||+++|.||++||++|+.+.|.+.+++++++  +  +.++.++++... .+.+.++...+|++.+  +|+...++.|
T Consensus        16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G   90 (104)
T 2vim_A           16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--E--VEFAKVDVDQNE-EAAAKYSVTAMPTFVFIKDGKEVDRFSG   90 (104)
T ss_dssp             TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--C--CEEEEEeccCCH-HHHHHcCCccccEEEEEeCCcEEEEEeC
Confidence            3478999999999999999999999999999875  2  567777766544 4566677777788776  6654444444

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.02  E-value=4.7e-10  Score=93.06  Aligned_cols=71  Identities=15%  Similarity=0.108  Sum_probs=55.7

Q ss_pred             Ccce-eeCCCCc-ccccCCCCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        24 ~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      .+++ |.+.+|+ +++++++||+++|.||++| |++|+..+|.+.+++++   .+  +++++|++|... ...++.+..+
T Consensus        24 ~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~--v~vv~Is~D~~~-~~~~~~~~~~   97 (175)
T 1xvq_A           24 APAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKDLPF-AQKRFCGAEG   97 (175)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESSCHH-HHTTCC----
T ss_pred             CCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cC--CEEEEEECCCHH-HHHHHHHHcC
Confidence            3444 8899999 9999999999999999999 99999999999999998   33  789999997533 3444444443

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.02  E-value=3.5e-11  Score=97.21  Aligned_cols=79  Identities=10%  Similarity=0.096  Sum_probs=54.7

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHH--HHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec---ChH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYD--TLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF---DET  109 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~--~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~---~~~  109 (351)
                      +..+..+||+|+|+|||+||++|+.+.|.+.+..+  .+.+    ..++.|++|.+.......+++..+|++.|   +|+
T Consensus        37 l~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~----~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~  112 (151)
T 3ph9_A           37 LFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ----NKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLT  112 (151)
T ss_dssp             HHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH----HTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSC
T ss_pred             HHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh----cCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCC
Confidence            33334479999999999999999999999987532  2222    13778888744333334466777888887   566


Q ss_pred             HHHHHhhh
Q 018726          110 LHKKLRIR  117 (351)
Q Consensus       110 ~~~~l~~~  117 (351)
                      ...++.|.
T Consensus       113 ~v~~~~G~  120 (151)
T 3ph9_A          113 VRADIAGR  120 (151)
T ss_dssp             BCTTCCCS
T ss_pred             EEEEEeCC
Confidence            66666664

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.02  E-value=9.2e-11  Score=93.12  Aligned_cols=69  Identities=9%  Similarity=0.025  Sum_probs=50.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .||+|+|+|||+||++|+.+.|.+.++++++.+    +.++.|+++...    +.+++..+|++.+  +|+...++.+.
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~----v~~~~vd~~~~~----~~~~i~~~Pt~~~~~~G~~v~~~~G~   99 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE----TKFVKAIVNSCI----EHYHDNCLPTIFVYKNGQIEGKFIGI   99 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSS----EEEEEECCSSSC----SSCCSSCCSEEEEESSSSCSEEEEST
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----cEEEEEEhhcCc----ccCCCCCCCEEEEEECCEEEEEEEeE
Confidence            468999999999999999999999999998731    445544444332    3456666778776  67665555553

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.01  E-value=2e-10  Score=96.19  Aligned_cols=75  Identities=12%  Similarity=0.219  Sum_probs=58.0

Q ss_pred             cCcce-eeCC--CC-c-ccccC-CCCCeE-EEEEeCCCChhhhh-hhHHHHHHHHHHhhcCCcEE-EEEEEecCChhhHH
Q 018726           23 EGVEF-LLSR--QG-K-VPLSS-CGGKTI-CLFFSANWCRPCKT-FTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFE   93 (351)
Q Consensus        23 ~~~~~-l~~~--~g-~-~~~~~-~~gk~v-~v~F~a~wC~~C~~-~~p~~~~l~~~~~~~~~~~~-iv~i~~d~~~~~~~   93 (351)
                      ..+++ |.+.  +| + +++++ ++||++ ++.||++||++|+. .+|.+.+++++|++.|  ++ |+.|+.|. ....+
T Consensus        31 ~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~~~~~  107 (184)
T 3uma_A           31 KLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVND-LHVMG  107 (184)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-HHHHH
T ss_pred             CCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC-HHHHH
Confidence            34455 7776  88 8 99999 899965 55566999999999 7999999999999887  78 99999985 33445


Q ss_pred             HHHhcCC
Q 018726           94 EHFKCMP  100 (351)
Q Consensus        94 ~~~~~~~  100 (351)
                      ++.+..+
T Consensus       108 ~f~~~~~  114 (184)
T 3uma_A          108 AWATHSG  114 (184)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            5544333

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.01  E-value=3.9e-11  Score=98.62  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             cCcce-eeCCCCc-ccccCC--CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           23 EGVEF-LLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~--~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      ..++| |.+.+|+ ++++++  +||+++|.|| ++||++|+..+|.+.++++++++.|  ++++.|+.|. .+...++.+
T Consensus        10 ~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d~-~~~~~~~~~   86 (164)
T 4gqc_A           10 KAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDS-PWCLKKFKD   86 (164)
T ss_dssp             BCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESSC-HHHHHHHHH
T ss_pred             CCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCCC-HHHHHHHHH
Confidence            44555 8899999 999998  8999999998 9999999999999999999998887  8899999874 334455544


Q ss_pred             --cCCcee
Q 018726           98 --CMPWLA  103 (351)
Q Consensus        98 --~~~~~~  103 (351)
                        .+++|.
T Consensus        87 ~~~~~fp~   94 (164)
T 4gqc_A           87 ENRLAFNL   94 (164)
T ss_dssp             HTTCCSEE
T ss_pred             hcCcccce
Confidence              344543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.01  E-value=2.2e-10  Score=92.96  Aligned_cols=82  Identities=13%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|+||++||++|+.+.|.+.++++++.  +  +.++.|+++.+. .+.+.+++..+|++.+  +|+...++.|. 
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~-  104 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--Q--VSFVKLEAEGVP-EVSEKYEISSVPTFLFFKNSQKIDRLDGA-  104 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESS-
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--C--eEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEEEEEeCC-
Confidence            59999999999999999999999999999873  2  566666666544 4666677777888877  66655555552 


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+++...+.
T Consensus       105 ~~~~l~~~i~  114 (153)
T 2wz9_A          105 HAPELTKKVQ  114 (153)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            2234444433

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.01  E-value=2e-10  Score=97.50  Aligned_cols=72  Identities=24%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             Ccce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        24 ~~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      .+++ |.+.+|+ +++++++||+++|.|| ++||++|+..+|.+.++++++  .+  +++++|+.|. .+...++.+..+
T Consensus        58 aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D~-~~~~~~~~~~~~  132 (200)
T 3zrd_A           58 AKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSDL-PFAQSRFCGAEG  132 (200)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESSC-HHHHTTCTTTTT
T ss_pred             CCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECCC-HHHHHHHHHHcC
Confidence            3345 8899999 9999999999999999 689999999999999999998  34  8999999884 334555544443

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.00  E-value=3.5e-10  Score=93.55  Aligned_cols=64  Identities=13%  Similarity=0.319  Sum_probs=52.2

Q ss_pred             c-ccccCC-CCC-eEEEEEeCCCChhhhhh-hHHHHHHHHHHhhcCCcEE-EEEEEecCChhhHHHHHhcCC
Q 018726           34 K-VPLSSC-GGK-TICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        34 ~-~~~~~~-~gk-~v~v~F~a~wC~~C~~~-~p~~~~l~~~~~~~~~~~~-iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      + ++++++ +|| +|++.||++||++|+.. +|.+.++++++++.|  ++ |+.|+.|.. ....++.+..+
T Consensus        33 ~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~Is~d~~-~~~~~~~~~~~  101 (171)
T 2pwj_A           33 STTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICVAINDP-YTVNAWAEKIQ  101 (171)
T ss_dssp             CCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEEESSCH-HHHHHHHHHTT
T ss_pred             ceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCH-HHHHHHHHHhC
Confidence            7 999996 996 67789999999999999 999999999998877  78 999999853 34455544333

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.00  E-value=3.6e-10  Score=92.10  Aligned_cols=68  Identities=13%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             eeCCCCc-ccccCCCCC--eEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcC
Q 018726           28 LLSRQGK-VPLSSCGGK--TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM   99 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk--~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (351)
                      |.+.+|+ ++++++.||  +++|.|| ++||++|+..+|.+.++++++++.+   ++++|++|. .+...++.+..
T Consensus        18 l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d~-~~~~~~~~~~~   89 (159)
T 2a4v_A           18 LLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSADS-VTSQKKFQSKQ   89 (159)
T ss_dssp             EECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESCC-HHHHHHHHHHH
T ss_pred             EECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCCC-HHHHHHHHHHh
Confidence            8899999 999999887  8999997 8999999999999999999998775   789999884 44455554433

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.00  E-value=8.6e-11  Score=84.89  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHHHHHHhhhhhhhHH
Q 018726           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREEL  123 (351)
Q Consensus        44 ~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  123 (351)
                      +.++.||++||++|+.+.|.+.++++++++.   +.++.+++|.+. .+.+.++...+|++.++|+.  ++.|....+++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~G~~--~~~G~~~~~~l   76 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR-EKAIEYGLMAVPAIAINGVV--RFVGAPSREEL   76 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG-GGGGGTCSSCSSEEEETTTE--EEECSSCCHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHhCCceeeCEEEECCEE--EEccCCCHHHH
Confidence            4689999999999999999999999998754   667777777554 34555677778888886654  34443333344


Q ss_pred             hh
Q 018726          124 KA  125 (351)
Q Consensus       124 ~~  125 (351)
                      .+
T Consensus        77 ~~   78 (85)
T 1nho_A           77 FE   78 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.99  E-value=3.6e-10  Score=86.22  Aligned_cols=72  Identities=24%  Similarity=0.428  Sum_probs=54.5

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .+||+++|.||++||++|+.+.|.+.++++.+.  +  +.++.+++|... .+.+.++...+|++.+  +|+...++.|
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g   97 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--N--VTFLKVDVDELK-AVAEEWNVEAMPTFIFLKDGKLVDKTVG   97 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTCH-HHHHHHHCSSTTEEEEEETTEEEEEEEC
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--C--cEEEEEEccccH-HHHHhCCCCcccEEEEEeCCEEEEEEec
Confidence            469999999999999999999999999999875  2  566666666443 4666677777788876  6654444443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.99  E-value=5.9e-11  Score=92.65  Aligned_cols=84  Identities=20%  Similarity=0.338  Sum_probs=56.0

Q ss_pred             CCCCeEEEEEeCCCCh--------------hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726           40 CGGKTICLFFSANWCR--------------PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~--------------~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (351)
                      .+||+++|+|||+||+              +|+.+.|.+.+++++++++   +.++.|++|.+. .+.+.+++..+|++.
T Consensus        19 ~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~~-~l~~~~~v~~~Pt~~   94 (123)
T 1oaz_A           19 KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTLL   94 (123)
T ss_dssp             SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSCT-TTGGGGTCCBSSEEE
T ss_pred             hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-HHHHHcCCCccCEEE
Confidence            4689999999999999              9999999999999988754   566666666544 355566766777877


Q ss_pred             c--ChHHHHHHhhhhhhhHHhhhc
Q 018726          106 F--DETLHKKLRIRKRREELKAID  127 (351)
Q Consensus       106 ~--~~~~~~~l~~~~~~~~l~~~~  127 (351)
                      +  +|+...++.|....+++.+.+
T Consensus        95 ~~~~G~~~~~~~G~~~~~~l~~~l  118 (123)
T 1oaz_A           95 LFKNGEVAATKVGALSKGQLKEFL  118 (123)
T ss_dssp             EEESSSEEEEEESCCCHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHH
Confidence            6  776655555544444444443

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.98  E-value=1.7e-09  Score=90.58  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=51.9

Q ss_pred             ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      +++++++||+++|.|| ++||++|+.++|.+.++++++++.+  +++++|++|.. +...++.+
T Consensus        24 ~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~~-~~~~~~~~   84 (187)
T 1we0_A           24 VTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDTH-FVHKAWHE   84 (187)
T ss_dssp             EETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HHHHHHHH
T ss_pred             ecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCCH-HHHHHHHH
Confidence            8899999999999999 9999999999999999999998866  89999999863 34444444

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.98  E-value=7.9e-10  Score=85.42  Aligned_cols=74  Identities=18%  Similarity=0.341  Sum_probs=55.0

Q ss_pred             eeCCCCc-ccccC---CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCcee
Q 018726           28 LLSRQGK-VPLSS---CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA  103 (351)
Q Consensus        28 l~~~~g~-~~~~~---~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~  103 (351)
                      +.+.+|. ..+.+   .+||+++|.||++||++|+.+.|.+.++++++ ..   +.++.|+++.+. .+.+.++...+|+
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~---v~~~~vd~~~~~-~~~~~~~i~~~Pt   79 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KD---VTFIKVDVDKNG-NAADAYGVSSIPA   79 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TT---SEEEEEETTTCH-HHHHHTTCCSSSE
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CC---eEEEEEECCCCH-HHHHhcCCCCCCE
Confidence            4455555 44431   25899999999999999999999999999987 22   567777666544 4666677777788


Q ss_pred             eec
Q 018726          104 VPF  106 (351)
Q Consensus       104 ~~~  106 (351)
                      +.+
T Consensus        80 ~~~   82 (118)
T 2f51_A           80 LFF   82 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.98  E-value=1.4e-09  Score=93.78  Aligned_cols=65  Identities=22%  Similarity=0.261  Sum_probs=55.7

Q ss_pred             CCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      +.+|+ +++++++||+++|.|| ++||++|+.++|.+.+++++|++.+  ++++.|++|.. +...++.+
T Consensus        43 ~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~~-~~~~~~~~  109 (220)
T 1zye_A           43 SGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSH-FSHLAWIN  109 (220)
T ss_dssp             SSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HHHHHHHT
T ss_pred             CCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HHHHHHHH
Confidence            45778 9999999999999999 9999999999999999999998776  89999999853 34444444

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.98  E-value=1.2e-09  Score=92.47  Aligned_cols=68  Identities=21%  Similarity=0.237  Sum_probs=57.5

Q ss_pred             eeCC--CC----cccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           28 LLSR--QG----KVPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        28 l~~~--~g----~~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      +.+.  +|    .++++++ +||+++|.|| ++||++|+.++|.+.++++++++.+  +++++|++|. .+...++.+.
T Consensus        12 l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~-~~~~~~~~~~   87 (198)
T 1zof_A           12 APAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-EQVHFAWKNT   87 (198)
T ss_dssp             EEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHHHHTS
T ss_pred             eecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHHHHHh
Confidence            6666  67    3899999 9999999999 9999999999999999999998876  8999999885 3455555544

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.98  E-value=3.3e-09  Score=85.67  Aligned_cols=75  Identities=15%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      -.+|+++|+|+++||.+|+.+....   .++.+.++    .++.++.++++...                     ...+.
T Consensus        40 ~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~----~~fv~v~~d~~~~~---------------------~~~l~   94 (153)
T 2dlx_A           40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR----EHFIFWQVYHDSEE---------------------GQRYI   94 (153)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH----HTEEEEEEESSSHH---------------------HHHHH
T ss_pred             HcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH----cCeEEEEEecCCHh---------------------HHHHH
Confidence            3589999999999999999997544   34444444    35666666665321                     46788


Q ss_pred             HHcCcCceeeEEEECCC-CceEec
Q 018726          238 RIFNIKGIPALVLIGPD-GKTIST  260 (351)
Q Consensus       238 ~~~~i~~~P~~~lid~~-G~v~~~  260 (351)
                      ++|++.++|+++++|++ |+.+.+
T Consensus        95 ~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           95 QFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             HHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             HHcCCCCCCEEEEEeCCCCcEeee
Confidence            99999999999999998 776544

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.97  E-value=9e-10  Score=95.33  Aligned_cols=69  Identities=16%  Similarity=0.286  Sum_probs=55.6

Q ss_pred             CCcEEEEEE----ecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          162 AGKTIGLYF----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       162 ~gk~vll~F----~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      .+.++++.|    |++||++|+.++|.+.++++++.+  .+++.++.|+++..                       ..++
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~~-----------------------~~l~   74 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVG--QDKIKLDIYSPFTH-----------------------KEET   74 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHC--TTTEEEEEECTTTC-----------------------HHHH
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCC--CCceEEEEecCccc-----------------------HHHH
Confidence            344556666    589999999999999999888842  26788888887764                       7899


Q ss_pred             HHcCcCceeeEEEECCCCc
Q 018726          238 RIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       238 ~~~~i~~~P~~~lid~~G~  256 (351)
                      ++|+|.++||+++++ +|+
T Consensus        75 ~~~~v~~~Ptl~~~~-~~~   92 (229)
T 2ywm_A           75 EKYGVDRVPTIVIEG-DKD   92 (229)
T ss_dssp             HHTTCCBSSEEEEES-SSC
T ss_pred             HHcCCCcCcEEEEEC-CCc
Confidence            999999999999994 444

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.96  E-value=1.3e-09  Score=89.90  Aligned_cols=82  Identities=15%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             cceeeCCCCc-cc--ccCCCCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHH
Q 018726           25 VEFLLSRQGK-VP--LSSCGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFE   93 (351)
Q Consensus        25 ~~~l~~~~g~-~~--~~~~~gk~v~v~F~a-------~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~   93 (351)
                      ...++..+.. +.  +..-++.+|+|+|||       +||++|+++.|.++++++.+....+.-.+.++.+|.++. .+.
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            3445555555 33  222356789999999       499999999999999999997221000244555554433 477


Q ss_pred             HHHhcCCceeeec
Q 018726           94 EHFKCMPWLAVPF  106 (351)
Q Consensus        94 ~~~~~~~~~~~~~  106 (351)
                      +.+++..+|++.+
T Consensus        97 ~~~~I~siPtl~~  109 (178)
T 3ga4_A           97 KDLKLQNVPHLVV  109 (178)
T ss_dssp             HHTTCCSSCEEEE
T ss_pred             HHcCCCCCCEEEE
Confidence            7788888888886

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.96  E-value=1.3e-09  Score=95.22  Aligned_cols=64  Identities=22%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             CCCCc-ccccCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHH
Q 018726           30 SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~   96 (351)
                      +.+|+ +++++++||+++|.||+ +||++|+..+|.|.+++++|++.|  +++++|++|... ...++.
T Consensus        64 d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~~~-~~~~~~  129 (240)
T 3qpm_A           64 NGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDSQF-THLAWI  129 (240)
T ss_dssp             TTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHH-HHHHHH
T ss_pred             CCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH-HHHHHH
Confidence            55677 99999999999999999 999999999999999999998877  899999998643 333443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.96  E-value=3.9e-10  Score=86.68  Aligned_cols=71  Identities=20%  Similarity=0.425  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      +||+++|.||++||++|+.+.|.+.+++++++  +  +.++.+++|... .+.+.++...+|++.+  +|+...++.|
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g   99 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--G--AIFLKVDVDELK-DVAEAYNVEAMPTFLFIKDGEKVDSVVG   99 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTSH-HHHHHTTCCSBSEEEEEETTEEEEEEES
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--cEEEEEEcccCH-HHHHHcCCCcCcEEEEEeCCeEEEEecC
Confidence            58999999999999999999999999999875  2  566666666543 4666677777888776  6665444444

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.96  E-value=1e-10  Score=92.82  Aligned_cols=79  Identities=13%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-------Ch-hhHHHHHhcCCceeeec--ChHHHHH
Q 018726           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DE-NGFEEHFKCMPWLAVPF--DETLHKK  113 (351)
Q Consensus        44 ~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-------~~-~~~~~~~~~~~~~~~~~--~~~~~~~  113 (351)
                      +++|+|||+||++|+.+.|.+.+++++++     +.++.|+++.       +. ..+.+.++...+|++.+  +|+...+
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~~v~~  107 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDK  107 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEETTEEEEE
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcCCEEEEE
Confidence            99999999999999999999999998764     4678888843       21 23666777778888877  6766666


Q ss_pred             HhhhhhhhHHhhhc
Q 018726          114 LRIRKRREELKAID  127 (351)
Q Consensus       114 l~~~~~~~~l~~~~  127 (351)
                      +.|....+.+...+
T Consensus       108 ~~G~~~~~~~~~~i  121 (135)
T 3emx_A          108 LVGATPWSLKVEKA  121 (135)
T ss_dssp             EESCCCHHHHHHHH
T ss_pred             EeCCCCHHHHHHHH
Confidence            66654444444433

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.94  E-value=1.1e-09  Score=85.31  Aligned_cols=65  Identities=20%  Similarity=0.417  Sum_probs=51.7

Q ss_pred             CCCCCeEEEEEeCC-------CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec------CChhhHHHHHhcCCceeee
Q 018726           39 SCGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD------HDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        39 ~~~gk~v~v~F~a~-------wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d------~~~~~~~~~~~~~~~~~~~  105 (351)
                      ...||+++|+|||+       ||++|+.+.|.+.++++++++.   +.++.|+++      .....+.+.++...+|++.
T Consensus        21 ~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~   97 (123)
T 1wou_A           21 QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLL   97 (123)
T ss_dssp             TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEE
T ss_pred             HhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCchhhhchhHHHHHHCCCCeeCEEE
Confidence            33599999999999       9999999999999999987643   677777774      2233566668888888888


Q ss_pred             c
Q 018726          106 F  106 (351)
Q Consensus       106 ~  106 (351)
                      +
T Consensus        98 ~   98 (123)
T 1wou_A           98 K   98 (123)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.92  E-value=1.8e-09  Score=95.05  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             CCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      +.+|+ +++++++||+++|.|| ++||++|+..+|.|.+++++|++.|  ++|++|++|... ...++.+
T Consensus        78 d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~~~-~~~~~~~  144 (254)
T 3tjj_A           78 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQF-THLAWIN  144 (254)
T ss_dssp             TTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HHHHHHT
T ss_pred             CCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCCHH-HHHHHHH
Confidence            55678 9999999999999999 9999999999999999999998877  899999998643 3344433

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.91  E-value=5.7e-09  Score=96.99  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             CCcEEEEEEecCCChhhHHhH------HHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          162 AGKTIGLYFGAHWCPPCRSFT------SQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      .+++++|.|||+||++|....      |.++++++.++.   .++.++.|+++..                       ..
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~---~~v~~~~Vd~~~~-----------------------~~   82 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED---KGVGFGLVDSEKD-----------------------AA   82 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTT---TTEEEEEEETTTT-----------------------HH
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhc---CCceEEEEeCccc-----------------------HH
Confidence            468999999999999974332      578888888864   5789999988864                       68


Q ss_pred             HHHHcCcCceeeEEEECCCCceE
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      ++++|+|.++||++++ ++|+++
T Consensus        83 l~~~~~V~~~PTl~~f-~~G~~~  104 (367)
T 3us3_A           83 VAKKLGLTEEDSIYVF-KEDEVI  104 (367)
T ss_dssp             HHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             HHHHcCCCcCceEEEE-ECCcEE
Confidence            9999999999999999 578765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.44  E-value=1.4e-10  Score=87.24  Aligned_cols=81  Identities=19%  Similarity=0.399  Sum_probs=57.8

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..+|+++|.||++||++|+.+.|.+.++++.+.+.   +.++.+++|.+. .+.+.++...+|++.+  +|+...++.|.
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~   92 (106)
T 2yj7_A           17 KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDENP-NTAAQYGIRSIPTLLLFKNGQVVDRLVGA   92 (106)
Confidence            36899999999999999999999999999988753   555555555433 3555666666777776  66665555554


Q ss_pred             hhhhHHh
Q 018726          118 KRREELK  124 (351)
Q Consensus       118 ~~~~~l~  124 (351)
                      ...+++.
T Consensus        93 ~~~~~l~   99 (106)
T 2yj7_A           93 QPKEALK   99 (106)
Confidence            4444443

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.88  E-value=1.9e-09  Score=94.33  Aligned_cols=86  Identities=9%  Similarity=0.026  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcC-CcEEEEEEEecCChhhHHHHHhcCCceeeecChHHHHHHhhh
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG-TELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR  117 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~-~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  117 (351)
                      ++.|+++++.|||+||++|+.+.|.+.++++.++..+ .++.+..|+++... ...+.+++..+|++.++|+..  +.|.
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~V~~vPt~~i~G~~~--~~G~  211 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP-DIADKYGVMSVPSIAINGYLV--FVGV  211 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH-HHHHHTTCCSSSEEEETTEEE--EESC
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH-HHHHHcCCeeeCeEEECCEEE--EeCC
Confidence            3578899999999999999999999999999985211 12555555555433 456667888889998876532  4443


Q ss_pred             hhhhHHhhhc
Q 018726          118 KRREELKAID  127 (351)
Q Consensus       118 ~~~~~l~~~~  127 (351)
                      ...+++...+
T Consensus       212 ~~~~~l~~~l  221 (243)
T 2hls_A          212 PYEEDFLDYV  221 (243)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            3344444433

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.88  E-value=2.3e-10  Score=99.87  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=51.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .|++|+|+|||+||++|+.+.|.|.++++++.+    +.++.|+++.  ..+.+.+.+..+|++.+  +|....++.|
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~----v~f~kVd~d~--~~l~~~~~I~~~PTll~~~~G~~v~~~vG  203 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN--TGAGDRFSSDVLPTLLVYKGGELLSNFIS  203 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT----SEEEEEEHHH--HCCTTSSCTTTCSEEEEEETTEEEEEETT
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----CEEEEEeCCc--HHHHHHCCCCCCCEEEEEECCEEEEEEeC
Confidence            589999999999999999999999999998753    4555555543  33444556666777766  6765555554

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.87  E-value=7.9e-10  Score=91.16  Aligned_cols=67  Identities=12%  Similarity=0.197  Sum_probs=47.9

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHH---HHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHH--------hcCCce
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQ---LVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHF--------KCMPWL  102 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~---~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~--------~~~~~~  102 (351)
                      +.....+||+|+|+|||+||++|+.|.|.   ..++++.+++.     ++++.+|.++. .+.+.+        ++.++|
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~-----fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~P  106 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA-----FVSIKVDREERPDIDNIYMTVCQIILGRGGWP  106 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH-----CEEEEEETTTCHHHHHHHHHHHHHHHSCCCSS
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc-----CceeeeCCcccCcHHHHHHHHHHHHcCCCCCc
Confidence            55555689999999999999999999993   25677777654     55555565432 333333        677788


Q ss_pred             eeec
Q 018726          103 AVPF  106 (351)
Q Consensus       103 ~~~~  106 (351)
                      ++.+
T Consensus       107 t~v~  110 (173)
T 3ira_A          107 LNII  110 (173)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            8877

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.87  E-value=1.8e-09  Score=77.21  Aligned_cols=65  Identities=28%  Similarity=0.423  Sum_probs=47.6

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.||++||++|+...+.|+++.++++      +.+..+.+|.+.                    ...+++++||+.++|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~v~~~~--------------------~~~~~~~~~gv~~vP   57 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSK------YTVEIVHLGTDK--------------------ARIAEAEKAGVKSVP   57 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTT------EEEEEEETTTCS--------------------STHHHHHHHTCCEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcC------CeEEEEEecCCh--------------------hhHHHHHHcCCCcCC
Confidence            678999999999999999988765543      344455555320                    035677899999999


Q ss_pred             eEEEECCCCceEec
Q 018726          247 ALVLIGPDGKTIST  260 (351)
Q Consensus       247 ~~~lid~~G~v~~~  260 (351)
                      ++++   +|+++..
T Consensus        58 t~~i---~g~~~~~   68 (80)
T 2k8s_A           58 ALVI---DGAAFHI   68 (80)
T ss_dssp             EEEE---TTEEEEE
T ss_pred             EEEE---CCEEEEe
Confidence            9877   7887654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.87  E-value=2.1e-09  Score=75.96  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHH
Q 018726           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL  110 (351)
Q Consensus        45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
                      +.|+||++||++|+.+.|.++++++++...   +.  ++.+| + ....+.++...+|++.++|+.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~--~~~v~-~-~~~~~~~~v~~~Pt~~~~G~~   60 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AE--FEKIK-E-MDQILEAGLTALPGLAVDGEL   60 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EE--EEEEC-S-HHHHHHHTCSSSSCEEETTEE
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eE--EEEec-C-HHHHHHCCCCcCCEEEECCEE
Confidence            468999999999999999999999987643   44  44555 3 345667777788888886643

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.86  E-value=1.3e-09  Score=103.25  Aligned_cols=65  Identities=8%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCC-----cEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-----ELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~-----~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      .+|+|+|+|||+||++|+.+.|.+.++++.++....     .+.++.|++|... .+++.+++..+|++.+
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~-~la~~y~V~~~PTlil  110 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV-DLCRKYDINFVPRLFF  110 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH-HHHHHTTCCSSCEEEE
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH-HHHHHcCCCccCeEEE
Confidence            458999999999999999999999999999874321     2555555555443 5677778788888876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.86  E-value=4.4e-09  Score=79.46  Aligned_cols=66  Identities=5%  Similarity=0.084  Sum_probs=53.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHhcC-Cceeeec--ChHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFKCM-PWLAVPF--DETLH  111 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~~~-~~~~~~~--~~~~~  111 (351)
                      ++++++|+|+|+|||+|+++.|.++++++.  ..   +.++.|++|..++   .+++.+++. ..|++.+  +|+..
T Consensus        23 ~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~---v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~~v   94 (112)
T 3iv4_A           23 ENKYVFVLKHSETCPISANAYDQFNKFLYE--RD---MDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGEMV   94 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HT---CCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTEEE
T ss_pred             cCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CC---ceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCEEE
Confidence            389999999999999999999999999984  32   6788898887764   378888877 4788877  77654

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.84  E-value=5.5e-09  Score=90.63  Aligned_cols=63  Identities=24%  Similarity=0.262  Sum_probs=55.6

Q ss_pred             Ccce-eeCCCCcccccCCCCC-eEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           24 GVEF-LLSRQGKVPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        24 ~~~~-l~~~~g~~~~~~~~gk-~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      .++| +.+.+|.++++++.|| +++|.|| ++||+.|...++.+.++++++++.|  +++++|++|..
T Consensus         9 aPdF~l~~~~G~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~~   74 (233)
T 2v2g_A            9 FPNFEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDNV   74 (233)
T ss_dssp             CCCCEEEETTCCEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCH
T ss_pred             CCCcEEecCCCCEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH
Confidence            3444 7788888889999998 9999998 8999999999999999999998877  99999999864

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.84  E-value=7.5e-09  Score=81.70  Aligned_cols=68  Identities=12%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .++++++.||++ |++|+.+.|.|.+++++|+    .++.++.|++|..                       ..++..||
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~----gk~~f~~vd~d~~-----------------------~~~a~~~g   73 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQR----GVINFGTIDAKAF-----------------------GAHAGNLN   73 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSST----TTSEEEEECTTTT-----------------------GGGTTTTT
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhC----CeEEEEEEchHHh-----------------------HHHHHHcC
Confidence            357899999999 8999999999999999987    5688888888854                       56889999


Q ss_pred             cCc--eeeEEEECC-CCce
Q 018726          242 IKG--IPALVLIGP-DGKT  257 (351)
Q Consensus       242 i~~--~P~~~lid~-~G~v  257 (351)
                      +.+  +||+++++. +|+.
T Consensus        74 i~~~~iPtl~i~~~~~g~~   92 (133)
T 2djk_A           74 LKTDKFPAFAIQEVAKNQK   92 (133)
T ss_dssp             CCSSSSSEEEEECTTTCCB
T ss_pred             CCcccCCEEEEEecCcCcc
Confidence            999  999999963 4665

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.84  E-value=8e-09  Score=77.90  Aligned_cols=64  Identities=20%  Similarity=0.456  Sum_probs=53.5

Q ss_pred             EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726          165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      .+|+.||++||++|+...+.|.++.+++.      +.+..|++|.+                       .+++++|++. 
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~------i~~~~vDId~d-----------------------~~l~~~ygv~-   79 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW------FELEVINIDGN-----------------------EHLTRLYNDR-   79 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC------CCCEEEETTTC-----------------------HHHHHHSTTS-
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC------CeEEEEECCCC-----------------------HHHHHHhCCC-
Confidence            56899999999999999999999987753      56778888865                       5678899997 


Q ss_pred             eeeEEEECCCCceEe
Q 018726          245 IPALVLIGPDGKTIS  259 (351)
Q Consensus       245 ~P~~~lid~~G~v~~  259 (351)
                      +|+++++ .+|+++.
T Consensus        80 VP~l~~~-~dG~~v~   93 (107)
T 2fgx_A           80 VPVLFAV-NEDKELC   93 (107)
T ss_dssp             CSEEEET-TTTEEEE
T ss_pred             CceEEEE-ECCEEEE
Confidence            9999887 6788763

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.84  E-value=4.3e-10  Score=88.14  Aligned_cols=72  Identities=21%  Similarity=0.434  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .+||+++|.||++||++|+.+.|.+.+++++++  +  +.++.|++|.+. .+.+.++...+|++.+  +|+...++.+
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g  107 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--G--AVFLKVDVDELK-EVAEKYNVEAMPTFLFIKDGAEADKVVG  107 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--T--BCCEECCTTTSG-GGHHHHTCCSSCCCCBCTTTTCCBCCCT
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--CEEEEEeccchH-HHHHHcCCCccceEEEEeCCeEEEEEeC
Confidence            469999999999999999999999999999875  2  456666555443 4556667777777776  6655444444

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.84  E-value=5e-08  Score=90.23  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=99.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeee-c--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP-F--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~  117 (351)
                      ..++++|-|+.+-+..+   ...+.++++.+ +.     +.|+..+.  ..+++.++..+ |++. |  ..+....+.+.
T Consensus        34 ~~~~~vvgff~~~~~~~---~~~f~~~A~~~-~~-----~~F~~t~~--~~v~~~~~v~~-~~i~lfk~f~~~~~~~~g~  101 (361)
T 3uem_A           34 SSEVAVIGFFKDVESDS---AKQFLQAAEAI-DD-----IPFGITSN--SDVFSKYQLDK-DGVVLFKKFDEGRNNFEGE  101 (361)
T ss_dssp             TSSEEEEEECSCTTSHH---HHHHHHHHHHC-SS-----SCEEEECC--HHHHHHTTCSS-SEEEEEESSTTSEEECCSC
T ss_pred             cCCcEEEEEEcCCCchH---HHHHHHHHhcC-CC-----ceEEEECc--HHHHHHhCCCC-CeEEEEEecCCCccccCCc
Confidence            46788888888755543   56888888887 32     33443332  34455555444 4333 3  11222222233


Q ss_pred             hhhhHHhhhccccccccchHHhhhccCCCcEecCCCccee-ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhccc
Q 018726          118 KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA  196 (351)
Q Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~  196 (351)
                      ...+.+..++....            .|-+. ..+...+. +-.-..+.++|.|+++||++|+.+.+.+.+++++|+   
T Consensus       102 ~~~~~i~~fi~~~~------------~p~v~-~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~---  165 (361)
T 3uem_A          102 VTKENLLDFIKHNQ------------LPLVI-EFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK---  165 (361)
T ss_dssp             CCHHHHHHHHHHHS------------SCSEE-ECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGT---
T ss_pred             CCHHHHHHHHHHcC------------CCcce-ecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHcc---
Confidence            33334444433221            22222 22222211 111123578999999999999999999999999997   


Q ss_pred             CCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc--eeeEEEECCCC
Q 018726          197 NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG--IPALVLIGPDG  255 (351)
Q Consensus       197 ~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~P~~~lid~~G  255 (351)
                       ..+.++.|+.+...                     ...+++.||+.+  +|++++++..+
T Consensus       166 -~~i~f~~vd~~~~~---------------------~~~~~~~fgi~~~~~P~~~~~~~~~  204 (361)
T 3uem_A          166 -GKILFIFIDSDHTD---------------------NQRILEFFGLKKEECPAVRLITLEE  204 (361)
T ss_dssp             -TTCEEEEECTTSGG---------------------GHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred             -CceEEEEecCChHH---------------------HHHHHHHcCCCccCCccEEEEEcCC
Confidence             45778877776321                     468899999987  99999996543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.83  E-value=4.2e-09  Score=76.59  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=46.0

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.||++||++|+...|.|.++..++         +..|++|.+                       .+++++|++. +|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~---------~~~vdid~~-----------------------~~l~~~~g~~-vP   49 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA---------FFSVFIDDD-----------------------AALESAYGLR-VP   49 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC---------EEEEECTTC-----------------------HHHHHHHTTT-CS
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh---------eEEEECCCC-----------------------HHHHHHhCCC-cC
Confidence            68899999999999999887653221         456777765                       5788899998 99


Q ss_pred             eEEEECCCCceEe
Q 018726          247 ALVLIGPDGKTIS  259 (351)
Q Consensus       247 ~~~lid~~G~v~~  259 (351)
                      ++++  .+|+.+.
T Consensus        50 tl~~--~~G~~v~   60 (87)
T 1ttz_A           50 VLRD--PMGRELD   60 (87)
T ss_dssp             EEEC--TTCCEEE
T ss_pred             eEEE--ECCEEEe
Confidence            9888  6788774

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.82  E-value=6.4e-10  Score=95.54  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=52.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .|++|+|.||++||++|+.+.|.|.++++++.+    +.++.|+++  ...+.+.+.+..+|++.+  +|....++.|.
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~----v~f~~vd~~--~~~l~~~~~i~~~PTl~~~~~G~~v~~~~G~  191 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRAS--NTGAGDRFSSDVLPTLLVYKGGELISNFISV  191 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHH--HHTCSTTSCGGGCSEEEEEETTEEEEEETTG
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCCC----eEEEEEECC--cHHHHHHCCCCCCCEEEEEECCEEEEEEeCC
Confidence            469999999999999999999999999998742    566666666  333444455566677665  77665555553

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.79  E-value=1.3e-09  Score=87.19  Aligned_cols=84  Identities=14%  Similarity=0.158  Sum_probs=53.0

Q ss_pred             CCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHHhhcCCcEE--EEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHH
Q 018726           41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELE--VIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKL  114 (351)
Q Consensus        41 ~gk~v~v~F~a~w--C~~C~~~~p~~~~l~~~~~~~~~~~~--iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  114 (351)
                      +++.++|.||++|  |++|+.+.|.++++++++ ++   +.  ++.|++|... .+++.+++..+|++.+  +|+...++
T Consensus        33 ~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~~~-~la~~~~V~~iPT~~~fk~G~~v~~~  107 (142)
T 2es7_A           33 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQSE-AIGDRFNVRRFPATLVFTDGKLRGAL  107 (142)
T ss_dssp             -CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHHHH-HHHHTTTCCSSSEEEEESCC----CE
T ss_pred             hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCCCH-HHHHhcCCCcCCeEEEEeCCEEEEEE
Confidence            3455888999987  999999999999999998 43   45  5555554322 4666778888888877  88877777


Q ss_pred             hhhhhhhHHhhhccc
Q 018726          115 RIRKRREELKAIDDS  129 (351)
Q Consensus       115 ~~~~~~~~l~~~~~~  129 (351)
                      .|....+++.+.++.
T Consensus       108 ~G~~~~~~l~~~i~~  122 (142)
T 2es7_A          108 SGIHPWAELLTLMRS  122 (142)
T ss_dssp             ESCCCHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHH
Confidence            775555555555443

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.78  E-value=1.3e-10  Score=89.01  Aligned_cols=86  Identities=12%  Similarity=0.096  Sum_probs=58.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      +.+.++|+|||+||++|+++.+.+...++.... +..+.++.|+++.+. ..++..++...+||+.+  +|+...++.|+
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCC
Confidence            456899999999999999998876655443110 111468888888753 24555567778888888  88887788775


Q ss_pred             hhhhHHhhhc
Q 018726          118 KRREELKAID  127 (351)
Q Consensus       118 ~~~~~l~~~~  127 (351)
                      -.-+.+..+.
T Consensus        96 ~~~~~f~~~L  105 (116)
T 3dml_A           96 PGEDFFWPML  105 (116)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            5555554443

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.77  E-value=4.9e-08  Score=85.15  Aligned_cols=86  Identities=9%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             CCCcEecCCCcceeecccCCcEEEEEEe--cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHHHhhhc
Q 018726          144 GRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFDLNHS  219 (351)
Q Consensus       144 ~pdf~~~~~g~~~~l~~~~gk~vll~F~--a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~  219 (351)
                      .+...+.++...+.-.--.+++|||.||  |+||+    +.|.+.++++++.. ..+++.|+.|+++.  +.        
T Consensus        14 ~~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~-~~~~v~~akVD~d~~g~~--------   80 (248)
T 2c0g_A           14 TCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHK-ATKDLLIATVGVKDYGEL--------   80 (248)
T ss_dssp             -CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHH-HCSSEEEEEEEECSSTTC--------
T ss_pred             CCCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhc-cCCCeEEEEEECCccccc--------
Confidence            3333344455545431124689999999  99998    89999999999862 13678999999876  10        


Q ss_pred             cCCceeeccCchhhHHHHHHcCcC--ceeeEEEECCCCc
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK  256 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~--~~P~~~lid~~G~  256 (351)
                                  ....++++|+|.  ++||++++ + |+
T Consensus        81 ------------~n~~la~~~~V~~~~~PTl~~F-~-G~  105 (248)
T 2c0g_A           81 ------------ENKALGDRYKVDDKNFPSIFLF-K-GN  105 (248)
T ss_dssp             ------------TTHHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred             ------------ccHHHHHHhCCCcCCCCeEEEE-e-CC
Confidence                        026899999999  99999999 5 77

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.76  E-value=5.9e-08  Score=94.34  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=58.4

Q ss_pred             cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          161 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       161 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      ..++..++.||++||++|+...|.++++..++     +++.+..|+++..                       .+++++|
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~-----~~v~~~~vd~~~~-----------------------~~~~~~~  166 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-----PRIKHTAIDGGTF-----------------------QNEITER  166 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-----TTEEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHc-----CceEEEEEechhh-----------------------HHHHHHh
Confidence            34678899999999999999999999998775     3578888887753                       6899999


Q ss_pred             CcCceeeEEEECCCCceEec
Q 018726          241 NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++.++|++++   +|+.+.+
T Consensus       167 ~i~svPt~~i---~g~~~~~  183 (521)
T 1hyu_A          167 NVMGVPAVFV---NGKEFGQ  183 (521)
T ss_dssp             TCCSSSEEEE---TTEEEEE
T ss_pred             CCCccCEEEE---CCEEEec
Confidence            9999999977   7888755

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.76  E-value=6.2e-08  Score=83.07  Aligned_cols=92  Identities=21%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHh
Q 018726          156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDL  216 (351)
Q Consensus       156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~  216 (351)
                      +.+....+|++|+.||++|||+|+++.|.|.++.+       .++.|+.+....   ..                ..|..
T Consensus        79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~-------~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~  151 (216)
T 1eej_A           79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA-------LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDD  151 (216)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHH
T ss_pred             eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh-------CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHH
Confidence            34444568999999999999999999999988754       246676665431   11                11222


Q ss_pred             hhccCCc--eeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726          217 NHSIMPW--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       217 ~~~~~~~--~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~  256 (351)
                      ++...+.  .......+....+++.|||.++||+++.  +|+
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~  191 (216)
T 1eej_A          152 VMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGT  191 (216)
T ss_dssp             HHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSC
T ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCe
Confidence            2222111  0122334556789999999999998653  564

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.75  E-value=1.5e-08  Score=87.11  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             Ccce-eeCC--CCcccccCCCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           24 GVEF-LLSR--QGKVPLSSCGGK--TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        24 ~~~~-l~~~--~g~~~~~~~~gk--~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      .+++ +.+.  +|.++++++.||  +||+.||++||+.|...++.+.++++++++.|  +++++|++|..
T Consensus         9 aP~F~l~~~~~~G~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~   76 (220)
T 1xcc_A            9 FPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSK   76 (220)
T ss_dssp             CCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCcEeecccCCCcEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCH
Confidence            3444 6666  777889999998  55566699999999999999999999998877  99999999864

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.74  E-value=1.3e-08  Score=87.80  Aligned_cols=63  Identities=19%  Similarity=0.291  Sum_probs=53.9

Q ss_pred             cce-eeCCCCcccccCCCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           25 VEF-LLSRQGKVPLSSCGGK--TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        25 ~~~-l~~~~g~~~~~~~~gk--~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +++ +.+.+|.++++++.||  +||+.||++||+.|...++.+.+++++|++.|  +++++|++|...
T Consensus        12 P~F~l~~~~G~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~~   77 (224)
T 1prx_A           12 PNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVE   77 (224)
T ss_dssp             CCCEEEETTEEEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHH
T ss_pred             CCcEEecCCCCEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHH
Confidence            444 7777888889999888  56777799999999999999999999998877  999999998643

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=98.74  E-value=2e-08  Score=85.44  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             ccCCCceeeecccCcce-e---eCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEE
Q 018726           11 IDSSDFLTVLASEGVEF-L---LSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS   84 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~-l---~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~   84 (351)
                      ++...+..-+..+.++| +   .+.+++ +++++++||+++|.|| +.||+.|...++.|.+.++++++.|  ++++.||
T Consensus        16 p~~~~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS   93 (216)
T 3sbc_A           16 PRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFAS   93 (216)
T ss_dssp             ------CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred             cCCCcchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEee
Confidence            34444444445566777 3   366777 9999999999999999 8999999999999999999999988  8999999


Q ss_pred             ecCCh
Q 018726           85 FDHDE   89 (351)
Q Consensus        85 ~d~~~   89 (351)
                      +|...
T Consensus        94 ~Ds~~   98 (216)
T 3sbc_A           94 TDSEY   98 (216)
T ss_dssp             SSCHH
T ss_pred             cCchh
Confidence            99643

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.72  E-value=1.1e-07  Score=80.09  Aligned_cols=43  Identities=21%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      .++++|+.||++|||+|+.+.|.+.++.++++    .++.++.++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAP----QDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCC----TTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCC----CCeEEEEEecc
Confidence            57999999999999999999999999988876    46888888886

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.72  E-value=9.4e-08  Score=78.88  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=38.6

Q ss_pred             cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          154 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       154 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      ....+....++++|+.||.+|||+|+.+.|.|.++.++++     ++.|+.+.+
T Consensus        13 ~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~-----~v~~~~~~~   61 (175)
T 3gyk_A           13 NAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP-----NVRLVYREW   61 (175)
T ss_dssp             TSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TEEEEEEEC
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC-----CEEEEEEeC
Confidence            3445555678999999999999999999999999988764     355555554

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.68  E-value=2.2e-08  Score=87.51  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=55.0

Q ss_pred             cCcce-eeCCCCcccc-cCC--CCCe-EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQGKVPL-SSC--GGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g~~~~-~~~--~gk~-v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..++| +.+.+|++++ +++  .||+ ||+.||++||+.|..+++.+.+++++|++.|  ++++.|++|...
T Consensus        10 ~aPdF~l~~~~G~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~~   79 (249)
T 3a2v_A           10 RFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVF   79 (249)
T ss_dssp             BCCCEEEEETTEEEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred             CCCCeEEEcCCCCEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCHH
Confidence            34455 7777788888 998  9996 4568899999999999999999999999877  899999998643

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.66  E-value=6.4e-08  Score=81.25  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      .++++|+.||+.|||+|+.+.|.|.++.+++.    .++.+..+++.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLP----ADVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCC----TTEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCC----CCeEEEEEehh
Confidence            57999999999999999999999999988876    46777777764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.64  E-value=1.9e-08  Score=77.06  Aligned_cols=68  Identities=21%  Similarity=0.373  Sum_probs=46.6

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      ++.+++ ||++||++|+.+.|.|.++..        .+.++.|+.+....+                  ....+.+.|++
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~--------~~~~v~v~~~~~~~~------------------~~~~l~~~~~v   71 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA--------SYKVVELDELSDGSQ------------------LQSALAHWTGR   71 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTC--------CCEEEEGGGSTTHHH------------------HHHHHHHHHSC
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCC--------CeEEEEccCCCChHH------------------HHHHHHHHhCC
Confidence            455655 999999999999998877632        234544444432100                  12468889999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++|++ ++  +|+++..
T Consensus        72 ~~~Pt~-~~--~g~~v~~   86 (116)
T 2e7p_A           72 GTVPNV-FI--GGKQIGG   86 (116)
T ss_dssp             CSSCEE-EE--TTEEEEC
T ss_pred             CCcCEE-EE--CCEEECC
Confidence            999999 44  6877754

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.63  E-value=2e-08  Score=86.03  Aligned_cols=71  Identities=14%  Similarity=0.055  Sum_probs=55.5

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEeCCC-Chhhh-----hhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHH
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCK-----TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE   94 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~w-C~~C~-----~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~   94 (351)
                      ..++| |.+.+|+ ++++++.||+++|.||++| |+.|.     ..++.+.++   +  .|  ++|+.|+.|. .....+
T Consensus        27 ~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~Ds-~~~~~~   98 (224)
T 3keb_A           27 YLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVDS-PSSLAR   98 (224)
T ss_dssp             BCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESSC-HHHHHH
T ss_pred             CCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECCC-HHHHHH
Confidence            44555 8899999 9999999999999999998 99999     888888876   4  34  7899999885 334455


Q ss_pred             HHhcCCc
Q 018726           95 HFKCMPW  101 (351)
Q Consensus        95 ~~~~~~~  101 (351)
                      +.+..++
T Consensus        99 f~~~~gl  105 (224)
T 3keb_A           99 ARHEHGL  105 (224)
T ss_dssp             HHHHHCC
T ss_pred             HHHHcCC
Confidence            5444443

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.60  E-value=2.9e-07  Score=79.98  Aligned_cols=67  Identities=13%  Similarity=0.226  Sum_probs=56.2

Q ss_pred             CCcEEEEEEec--CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHhhhccCCceeeccCchhhHHH
Q 018726          162 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       162 ~gk~vll~F~a--~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .++++||.|||  +||+    +.|.+.++++.+..  .+++.|+.|++|.   +.                     ...+
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~--~~~v~~akVDvd~~g~~~---------------------~~~l   73 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSAS--SDDLLVAEVGISDYGDKL---------------------NMEL   73 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTT--CTTEEEEEECCCCSSSCC---------------------SHHH
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcC--CCCeEEEEEeCCcccchh---------------------hHHH
Confidence            46899999999  9998    89999999999863  3578898888764   11                     3689


Q ss_pred             HHHcCcC--ceeeEEEECCCCc
Q 018726          237 CRIFNIK--GIPALVLIGPDGK  256 (351)
Q Consensus       237 ~~~~~i~--~~P~~~lid~~G~  256 (351)
                      +++|+|.  ++||++++ ++|+
T Consensus        74 ~~~~~V~~~~~PTl~~f-~~G~   94 (240)
T 2qc7_A           74 SEKYKLDKESYPVFYLF-RDGD   94 (240)
T ss_dssp             HHHTTCCGGGCSEEEEE-ETTC
T ss_pred             HHHcCCCCCCCCEEEEE-eCCC
Confidence            9999999  99999999 6776

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=98.57  E-value=1.1e-07  Score=81.02  Aligned_cols=68  Identities=25%  Similarity=0.307  Sum_probs=59.8

Q ss_pred             ecccCcce-----eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           20 LASEGVEF-----LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        20 ~~~~~~~~-----l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +..+.++|     |.+.+|+ +++++++||+++|+|| +.||+.|...+..|.+++++|++.|  ++|+.||+|...
T Consensus        28 vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~Ds~~  102 (219)
T 3tue_A           28 INSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSIDSEY  102 (219)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESSCHH
T ss_pred             cCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCCchh
Confidence            34456666     5578888 9999999999999999 7999999999999999999999988  899999999743

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.55  E-value=2.4e-08  Score=76.49  Aligned_cols=62  Identities=13%  Similarity=0.163  Sum_probs=44.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh------hHHHHHhcCCceeeecChHHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN------GFEEHFKCMPWLAVPFDETLHK  112 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~  112 (351)
                      +++++++ ||++||++|+.+.|.+.++..         .+.++++|.+..      .+.+.++...+|++..+|+...
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~---------~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~~v~   85 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGA---------SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIG   85 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTC---------CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEE
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCC---------CeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEEC
Confidence            4566666 999999999999999888632         245667765542      3666677777888844765443

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.54  E-value=1.7e-07  Score=67.44  Aligned_cols=66  Identities=21%  Similarity=0.385  Sum_probs=49.2

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC--cCc
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG  244 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~  244 (351)
                      ++.|+++|||+|+...+.|+++.++++     ++.+..++++.+..                   ...++.+.++  +.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-----~i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~   58 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----DFQYQYVDIRAEGI-------------------TKEDLQQKAGKPVET   58 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-----SCEEEEECHHHHTC-------------------CSHHHHHHTCCCSCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC-----CceEEEEecccChH-------------------HHHHHHHHhCCCCce
Confidence            678999999999999999999988763     46777777653210                   0146888898  999


Q ss_pred             eeeEEEECCCCceEe
Q 018726          245 IPALVLIGPDGKTIS  259 (351)
Q Consensus       245 ~P~~~lid~~G~v~~  259 (351)
                      +|+++ +  +|+.+.
T Consensus        59 vP~i~-~--~g~~i~   70 (85)
T 1ego_A           59 VPQIF-V--DQQHIG   70 (85)
T ss_dssp             SCEEE-E--TTEEEE
T ss_pred             eCeEE-E--CCEEEE
Confidence            99984 4  576653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.51  E-value=1.7e-07  Score=69.98  Aligned_cols=63  Identities=16%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      .+++++.|+++||++|+...+.|.++.        .++.+..|++|...                     ..++.++|| 
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~--------~~i~~~~vdi~~~~---------------------~~el~~~~g-   64 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK--------DRFILQEVDITLPE---------------------NSTWYERYK-   64 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS--------SSSEEEEEETTSST---------------------THHHHHHSS-
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh--------hCCeEEEEECCCcc---------------------hHHHHHHHC-
Confidence            457888999999999999998886542        33678888887321                     367889999 


Q ss_pred             CceeeEEEECCCCceE
Q 018726          243 KGIPALVLIGPDGKTI  258 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~  258 (351)
                      .++|+++ +  +|+.+
T Consensus        65 ~~vP~l~-~--~g~~~   77 (100)
T 1wjk_A           65 FDIPVFH-L--NGQFL   77 (100)
T ss_dssp             SSCSEEE-E--SSSEE
T ss_pred             CCCCEEE-E--CCEEE
Confidence            9999764 4  56654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.50  E-value=1.9e-08  Score=79.31  Aligned_cols=83  Identities=13%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC--ceeeec-Ch--HHHHHHh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP--WLAVPF-DE--TLHKKLR  115 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~~~-~~--~~~~~l~  115 (351)
                      .+++|+++|||+ |++|+++.|.+++++++|+++   +.++.+++|... ...+.++...  +|++.+ +.  ....++.
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~~-~~a~~~gi~~~~iPtl~i~~~~~g~~~~~~   96 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAFG-AHAGNLNLKTDKFPAFAIQEVAKNQKFPFD   96 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTG-GGTTTTTCCSSSSSEEEEECTTTCCBCCCC
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHhH-HHHHHcCCCcccCCEEEEEecCcCcccCCC
Confidence            467899999999 899999999999999999876   566666655433 3566677666  788776 32  2223333


Q ss_pred             --hhhhhhHHhhhcc
Q 018726          116 --IRKRREELKAIDD  128 (351)
Q Consensus       116 --~~~~~~~l~~~~~  128 (351)
                        +....+.+.+++.
T Consensus        97 ~~g~~~~~~l~~fi~  111 (133)
T 2djk_A           97 QEKEITFEAIKAFVD  111 (133)
T ss_dssp             SSSCCCHHHHHHHHH
T ss_pred             CccccCHHHHHHHHH
Confidence              4334445555544

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.50  E-value=2.8e-07  Score=77.43  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=37.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      .++++|+.||..|||+|..+.+.|.++.++++    .++.+..+++.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALP----SDAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSC----TTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCC----CceEEEEeccc
Confidence            57899999999999999999999999998875    46788877764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.46  E-value=1.1e-06  Score=76.53  Aligned_cols=96  Identities=10%  Similarity=0.065  Sum_probs=60.4

Q ss_pred             eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC---CC-------------HHHHHhhhc
Q 018726          156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD---RD-------------HKEFDLNHS  219 (351)
Q Consensus       156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d---~~-------------~~~~~~~~~  219 (351)
                      +.+....++.+|+.|+.+|||+|+++.+.+.++.+.      .++.|+.+.+.   .+             ...+.....
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~------g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~  163 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE  163 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHH
T ss_pred             ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC------CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHH
Confidence            333444578999999999999999999998876552      35777666652   11             111111111


Q ss_pred             -cCC---cee-------eccCchhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          220 -IMP---WLA-------IPYEDRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       220 -~~~---~~~-------~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                       .+.   ...       .....+....+++.+||.++|++++.|.+|++
T Consensus       164 ~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          164 ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             HTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             HHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence             110   000       00012345678899999999999999888865

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.43  E-value=3.4e-07  Score=75.39  Aligned_cols=63  Identities=16%  Similarity=0.297  Sum_probs=50.7

Q ss_pred             ccccCC-CCCeE-EEEEeCCCChhhhh-hhHHHHHHHHHHhhcCCcE-EEEEEEecCChhhHHHHHhcCC
Q 018726           35 VPLSSC-GGKTI-CLFFSANWCRPCKT-FTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        35 ~~~~~~-~gk~v-~v~F~a~wC~~C~~-~~p~~~~l~~~~~~~~~~~-~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      ++++++ +||++ |+.||+.||+.|.. .+|.|.+.+++++..|  + +|+.|++|.. ....++.+..+
T Consensus        39 vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~VigIS~D~~-~~~~~f~~~~~  105 (176)
T 4f82_A           39 CSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWCVSVNDA-FVMGAWGRDLH  105 (176)
T ss_dssp             EEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSCH-HHHHHHHHHTT
T ss_pred             EeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEEEeCCCH-HHHHHHHHHhC
Confidence            889996 99855 55777899999999 9999999999999888  8 8999999853 34445544443

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.42  E-value=1.4e-08  Score=90.42  Aligned_cols=71  Identities=18%  Similarity=0.489  Sum_probs=48.5

Q ss_pred             eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCc-hhhH
Q 018726          156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED-RARQ  234 (351)
Q Consensus       156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-d~~~  234 (351)
                      +.+++.-++..++.|||+||++|+++.|.++++.++++          .|.+|...                  . +...
T Consensus       190 ~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~----------~Vd~d~~d------------------~~~~~~  241 (291)
T 3kp9_A          190 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP----------YVECSPNG------------------PGTPQA  241 (291)
T ss_dssp             HHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGSC----------EEESCSSC------------------SSSCCC
T ss_pred             HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHcC----------EEEEeecC------------------chhhHH
Confidence            34444334455799999999999999999988865442          34444210                  0 0136


Q ss_pred             HHHHHcCcCceeeEEEECCCCce
Q 018726          235 DLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       235 ~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                      +++++|+|+++||+++   +|+.
T Consensus       242 ~la~~~gI~~vPT~~i---~G~~  261 (291)
T 3kp9_A          242 QECTEAGITSYPTWII---NGRT  261 (291)
T ss_dssp             HHHHTTTCCSTTEEEE---TTEE
T ss_pred             HHHHHcCCcccCeEEE---CCEE
Confidence            8899999999999555   6753

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.41  E-value=7.7e-08  Score=68.60  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=44.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC--hhhHHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD--ENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~--~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.||++||++|+++.|.++++.+++   +  +.+.++++|.+  .....+.++....|++.++|+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i~g~   64 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDKARIAEAEKAGVKSVPALVIDGA   64 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCSSTHHHHHHHTCCEEEEEEETTE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCChhhHHHHHHcCCCcCCEEEECCE
Confidence            67799999999999999999877654   2  56777787754  334455667777888888665

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.36  E-value=1.2e-06  Score=74.71  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=54.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHhhhccCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP  222 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~  222 (351)
                      .++++++.||++|||+|+++.|.|.++.+       .++.|..+....   ..                ..|..++...+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~-------~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~  157 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND-------LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL  157 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh-------CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence            47899999999999999999999888543       236666554431   11                11111111111


Q ss_pred             c--eeeccCchhhHHHHHHcCcCceeeEEEECCCCc
Q 018726          223 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       223 ~--~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~  256 (351)
                      .  .......+....+++.+||.++||+++  .+|+
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~  191 (211)
T 1t3b_A          158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE  191 (211)
T ss_dssp             CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred             CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence            0  001112235678899999999999888  4675

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.36  E-value=3.2e-06  Score=72.87  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=99.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--Ch-HHHHHHhh-
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DE-TLHKKLRI-  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~-  116 (351)
                      .+++++|-|+++||   ....+.+.++|+.+. .   +.+..+  . + ..+++.++..+ |++.+  .. +....+.+ 
T Consensus        26 ~~~v~vVgff~~~~---~~~~~~f~~~A~~l~-~---~~F~~t--~-~-~~v~~~~~v~~-p~i~lfk~~~~~~~~~~~~   93 (227)
T 4f9z_D           26 ATEVAVIGFFQDLE---IPAVPILHSMVQKFP-G---VSFGIS--T-D-SEVLTHYNITG-NTICLFRLVDNEQLNLEDE   93 (227)
T ss_dssp             TSSEEEEEECSCSC---STHHHHHHHHTTTCT-T---SEEEEE--C-C-HHHHHHTTCCS-SEEEEEETTTTEEEEECHH
T ss_pred             cCCeEEEEEecCCC---chhHHHHHHHHHhCC-C---ceEEEE--C-C-HHHHHHcCCCC-CeEEEEEecCccccccccc
Confidence            57899999999984   678999999999884 3   344432  2 2 23444455444 65543  21 11112221 


Q ss_pred             ---hhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceeecccCC-cEEEEEEecCCChhhHHhHHHHHHHHHHh
Q 018726          117 ---RKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAG-KTIGLYFGAHWCPPCRSFTSQLIEVYNEL  192 (351)
Q Consensus       117 ---~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~~~~g-k~vll~F~a~~C~~C~~~~~~l~~l~~~~  192 (351)
                         ....+.+..++....            .|-+ ...+..+...---.+ +.+++.|...||+.|....+.+.++++++
T Consensus        94 ~~g~~~~~~l~~fi~~~~------------~plv-~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~  160 (227)
T 4f9z_D           94 DIESIDATKLSRFIEINS------------LHMV-TEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLF  160 (227)
T ss_dssp             HHHTCCHHHHHHHHHHHC------------CCSE-EECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHHHHhC------------CCce-eecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHh
Confidence               223333433333221            2222 222222211000023 35556677889999999999999999999


Q ss_pred             hcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcC--ceeeEEEECCCCc
Q 018726          193 KTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK  256 (351)
Q Consensus       193 ~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~--~~P~~~lid~~G~  256 (351)
                      +    .++.++.|+.+...                     ...+.+.||+.  .+|++.+++..+.
T Consensus       161 k----~~i~F~~vd~~~~~---------------------~~~~l~~fgl~~~~~P~~~i~~~~~~  201 (227)
T 4f9z_D          161 Q----GKILFILVDSGMKE---------------------NGKVISFFKLKESQLPALAIYQTLDD  201 (227)
T ss_dssp             T----TTCEEEEEETTSGG---------------------GHHHHHHTTCCGGGCSEEEEEESSSC
T ss_pred             h----CCEEEEEeCCccHh---------------------HHHHHHHcCCCcccCCEEEEEECCCC
Confidence            8    45888888876421                     34677899998  7999999975544

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.34  E-value=7.9e-07  Score=71.64  Aligned_cols=65  Identities=11%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~  106 (351)
                      ..+||+|+|+|+++||..|+.|....   .++.+.++++   +.++-++++..+. .+.+.++...+|++.|
T Consensus        39 k~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~~~~l~~~y~v~~~P~~~f  107 (153)
T 2dlx_A           39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (153)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             HHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHhHHHHHHHcCCCCCCEEEE
Confidence            34699999999999999999997655   5555555544   4444444433222 3667788888999988

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.34  E-value=9.1e-08  Score=85.17  Aligned_cols=82  Identities=11%  Similarity=0.160  Sum_probs=55.4

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC----C-hhhHHHHHhcCCceeeecChH
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH----D-ENGFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~----~-~~~~~~~~~~~~~~~~~~~~~  109 (351)
                      ..+.+.-.+..+++|||+||+||+++.|.+++++++++         .+++|.    + +...++.++...+|++..+|+
T Consensus       190 ~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~---------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i~G~  260 (291)
T 3kp9_A          190 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGPGTPQAQECTEAGITSYPTWIINGR  260 (291)
T ss_dssp             HHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCSSCSSSCCCHHHHTTTCCSTTEEEETTE
T ss_pred             HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHcC---------EEEEeecCchhhHHHHHHHcCCcccCeEEECCE
Confidence            45544433445799999999999999999999886531         455551    2 345777788888899877774


Q ss_pred             HHHHHhhhhhhhHHhhhcc
Q 018726          110 LHKKLRIRKRREELKAIDD  128 (351)
Q Consensus       110 ~~~~l~~~~~~~~l~~~~~  128 (351)
                         ++.|....+++.+...
T Consensus       261 ---~~~G~~~~~~L~~~l~  276 (291)
T 3kp9_A          261 ---TYTGVRSLEALAVASG  276 (291)
T ss_dssp             ---EEESCCCHHHHHHHTC
T ss_pred             ---EecCCCCHHHHHHHHC
Confidence               2455444455544443

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.33  E-value=1.1e-06  Score=76.60  Aligned_cols=129  Identities=9%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             CCCeEEEEEe--CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC--C--hhhHHHHHhcC--Cceeeec-ChHH-
Q 018726           41 GGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--D--ENGFEEHFKCM--PWLAVPF-DETL-  110 (351)
Q Consensus        41 ~gk~v~v~F~--a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~--~--~~~~~~~~~~~--~~~~~~~-~~~~-  110 (351)
                      .+++|+|+||  ||||+    +.|.|.++++.+.+..+++.++.|++|.  +  ...+++.+++.  .+||+.+ .|+. 
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~PTl~~F~G~~~  107 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNAD  107 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEEESSSSS
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCCeEEEEeCCcC
Confidence            5789999999  99999    9999999999997611235666666654  1  34577888888  8888887 4321 


Q ss_pred             -HHHH--hhhhhhhHHhhhccccccccchHHhhhccCCCcEecCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHH
Q 018726          111 -HKKL--RIRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE  187 (351)
Q Consensus       111 -~~~l--~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~  187 (351)
                       ..++  .+....+.+..++.......              ....|..-.+..     ++-.|.+.||..|...+..+++
T Consensus       108 ~~~~y~~~G~~~~~~L~~fi~~~~~~~--------------~~~~g~i~~~d~-----l~~~f~~~~~~~~~~~~~~~~~  168 (248)
T 2c0g_A          108 EYVQLPSHVDVTLDNLKAFVSANTPLY--------------IGRDGCIKEFNE-----VLKNYANIPDAEQLKLIEKLQA  168 (248)
T ss_dssp             SEEECCTTSCCCHHHHHHHHHHHSSCC--------------CCCTTCCHHHHH-----HHTTGGGSCHHHHHHHHHHHHH
T ss_pred             cceeecccCCCCHHHHHHHHHHhhccc--------------cCCCCchHHHHH-----HHHHHhcccchhHHHHHHHHHH
Confidence             1233  44344444544443321100              011221111122     2235788899889888888777


Q ss_pred             HHHHh
Q 018726          188 VYNEL  192 (351)
Q Consensus       188 l~~~~  192 (351)
                      ..+.+
T Consensus       169 ~~~~l  173 (248)
T 2c0g_A          169 KQEQL  173 (248)
T ss_dssp             HHHHC
T ss_pred             HHHHc
Confidence            76654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.32  E-value=3.3e-06  Score=70.56  Aligned_cols=42  Identities=26%  Similarity=0.277  Sum_probs=36.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      .++++|+.||..+||+|....+.+.++.++++    .++.+..+++
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQA----KDVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcC----CceEEEEeCc
Confidence            57899999999999999999999999988775    4677877776

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.29  E-value=5.7e-07  Score=78.10  Aligned_cols=82  Identities=10%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             CCCeEEEEEeC--CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC---C-hhhHHHHHhcC--Cceeeec--ChH-
Q 018726           41 GGKTICLFFSA--NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---D-ENGFEEHFKCM--PWLAVPF--DET-  109 (351)
Q Consensus        41 ~gk~v~v~F~a--~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~---~-~~~~~~~~~~~--~~~~~~~--~~~-  109 (351)
                      .+++|+|+|||  |||+    +.|.|.++++.+.+. +++.++.|++|.   + ...+++.+++.  .+|++.+  +|. 
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl~~f~~G~~   95 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDF   95 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEEEEEETTCS
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEEEEEeCCCc
Confidence            56899999999  9999    999999999999753 225555555542   2 33577788888  8888887  554 


Q ss_pred             -HHHHHhhhhhhhHHhhhc
Q 018726          110 -LHKKLRIRKRREELKAID  127 (351)
Q Consensus       110 -~~~~l~~~~~~~~l~~~~  127 (351)
                       ...++.|....+.+..++
T Consensus        96 ~~~~~y~G~~~~~~L~~fi  114 (240)
T 2qc7_A           96 ENPVPYTGAVKVGAIQRWL  114 (240)
T ss_dssp             SCCEECCSCSCHHHHHHHH
T ss_pred             CcceeecCCCCHHHHHHHH
Confidence             233444433444444433

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.27  E-value=5.9e-07  Score=64.48  Aligned_cols=60  Identities=8%  Similarity=0.182  Sum_probs=45.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---hhHHHHHh--cCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---NGFEEHFK--CMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~~~~~~~~--~~~~~~~~~~~~  109 (351)
                      ++.|+++||++|+++.+.+.+++++++  +  +.+..++++.+.   +.+.+.++  ...+|++..+|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~   67 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--D--FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQ   67 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--S--CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--C--ceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCE
Confidence            677999999999999999999988754  2  678888876543   24565565  577888866665

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.27  E-value=5.7e-07  Score=67.68  Aligned_cols=60  Identities=13%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHH
Q 018726           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETL  110 (351)
Q Consensus        44 ~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~  110 (351)
                      .+++.||++||++|+++.|.++++++++.     +.+..|++|.+.+... .+... +|++.+  +|+.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-----i~~~~vDId~d~~l~~-~ygv~-VP~l~~~~dG~~   91 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-----FELEVINIDGNEHLTR-LYNDR-VPVLFAVNEDKE   91 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC-----CCCEEEETTTCHHHHH-HSTTS-CSEEEETTTTEE
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC-----CeEEEEECCCCHHHHH-HhCCC-CceEEEEECCEE
Confidence            56999999999999999999999988753     5677888887665443 44444 788843  6653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.26  E-value=3.4e-07  Score=68.28  Aligned_cols=62  Identities=13%  Similarity=0.210  Sum_probs=45.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh-hhHHHHHhcCCceeeecChHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPFDETL  110 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~~~~~~~  110 (351)
                      ..+++++.|+++||++|+++.|.+.++++.       +.+..+++|.++ ..+.+.++ ...|++..+|+.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~~-------i~~~~vdi~~~~~~el~~~~g-~~vP~l~~~g~~   76 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDR-------FILQEVDITLPENSTWYERYK-FDIPVFHLNGQF   76 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSS-------SEEEEEETTSSTTHHHHHHSS-SSCSEEEESSSE
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhhC-------CeEEEEECCCcchHHHHHHHC-CCCCEEEECCEE
Confidence            456789999999999999999998875432       577788887212 34556667 778888667754

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.25  E-value=3.9e-07  Score=66.04  Aligned_cols=55  Identities=13%  Similarity=0.127  Sum_probs=39.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec-ChHH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETL  110 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~  110 (351)
                      ++.||++||++|+++.|.++++...+        +..|++|.+.+ +.+.++.. .|++.+ +|+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~~~-l~~~~g~~-vPtl~~~~G~~   58 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDDAA-LESAYGLR-VPVLRDPMGRE   58 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTCHH-HHHHHTTT-CSEEECTTCCE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCCHH-HHHHhCCC-cCeEEEECCEE
Confidence            78899999999999999998754321        45677776654 44445555 788884 5553

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.22  E-value=3.8e-06  Score=76.25  Aligned_cols=74  Identities=20%  Similarity=0.142  Sum_probs=53.9

Q ss_pred             Ccce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh--c
Q 018726           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK--C   98 (351)
Q Consensus        24 ~~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~--~   98 (351)
                      .++| |.+.+|+ +++++++||+|+|+|| +.||+.|...++.+.+    ....+  ++++.||.|... ...++.+  .
T Consensus         4 ~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~--~~v~gis~D~~~-~~~~f~~~~~   76 (322)
T 4eo3_A            4 VKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEK--AQVVGISRDSVE-ALKRFKEKND   76 (322)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTT--EEEEEEESCCHH-HHHHHHHHHT
T ss_pred             CCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCC--CEEEEEeCCCHH-HHHHHHHhhC
Confidence            3455 9999999 9999999999999999 4799999998887754    12223  899999987533 3344433  3


Q ss_pred             CCceee
Q 018726           99 MPWLAV  104 (351)
Q Consensus        99 ~~~~~~  104 (351)
                      +++|.+
T Consensus        77 l~fp~l   82 (322)
T 4eo3_A           77 LKVTLL   82 (322)
T ss_dssp             CCSEEE
T ss_pred             CceEEE
Confidence            455533

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.20  E-value=5.2e-06  Score=69.61  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      .++++|+.||+.|||+|+.+.|.+.++.+++.    .++.+..++++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~----~~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFK----DDMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCC----TTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCC----CCeEEEEecCC
Confidence            47899999999999999999999999988776    46888888875

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.18  E-value=1.7e-05  Score=65.19  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=40.9

Q ss_pred             eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      +.+....++++|+.|+..+||+|..+.+.+.++.++|.+  ..++.++...+.
T Consensus        20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~~~v~~~~~~~~   70 (175)
T 1z6m_A           20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK--SGKVERIIKLFD   70 (175)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH--TTSEEEEEEECC
T ss_pred             cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhh--CCcEEEEEEeCC
Confidence            445555689999999999999999999999999888832  156888877664

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.10  E-value=3.5e-06  Score=69.26  Aligned_cols=47  Identities=15%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      ..+....+|++++.||.+|||+|+.+.|.+.++.+++.+    +.+++..+
T Consensus        15 ~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~~   61 (175)
T 3gyk_A           15 PVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYREW   61 (175)
T ss_dssp             CEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEEC
T ss_pred             CCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEeC
Confidence            566667899999999999999999999999999887543    56666664

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.09  E-value=3.4e-06  Score=81.93  Aligned_cols=82  Identities=16%  Similarity=0.009  Sum_probs=58.2

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHHHHHHhhhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKR  119 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  119 (351)
                      ..+++.++.||++||++|+++.|.+++++..+. +   +.+..++++... .+.+.++.+..|++.++|+....  +...
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~---v~~~~vd~~~~~-~~~~~~~i~svPt~~i~g~~~~~--G~~~  187 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-R---IKHTAIDGGTFQ-NEITERNVMGVPAVFVNGKEFGQ--GRMT  187 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-T---EEEEEEETTTCH-HHHHHTTCCSSSEEEETTEEEEE--SCCC
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-c---eEEEEEechhhH-HHHHHhCCCccCEEEECCEEEec--CCCC
Confidence            357888999999999999999999999988764 2   566666665433 46667788888999887754321  3334


Q ss_pred             hhHHhhhcc
Q 018726          120 REELKAIDD  128 (351)
Q Consensus       120 ~~~l~~~~~  128 (351)
                      ..++...+.
T Consensus       188 ~~~l~~~l~  196 (521)
T 1hyu_A          188 LTEIVAKVD  196 (521)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            444444433

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.04  E-value=3.7e-06  Score=71.91  Aligned_cols=42  Identities=19%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      ....+|++++.||++|||+|+++.|.+.++.+.    +  +.++++.+
T Consensus        82 g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~--v~v~~~~~  123 (216)
T 1eej_A           82 KAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAF  123 (216)
T ss_dssp             CCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEEC
T ss_pred             cCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----C--cEEEEEEC
Confidence            344789999999999999999999999987652    3  67776654

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.91  E-value=2.7e-06  Score=71.62  Aligned_cols=45  Identities=18%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecC
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      ..+++++|.||++|||||+++.|.+   .++.+++.++   +.+..+.++.
T Consensus       111 ~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~  158 (197)
T 1un2_A          111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNF  158 (197)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSS
T ss_pred             CCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCc
Confidence            3578999999999999999999998   9998888654   5666776654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.89  E-value=9.8e-06  Score=60.55  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=42.5

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++|||+|+...+.|.++..++     +++  ..++++.+...                ......+.+.+|+.++|
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~-----~~~--~~vdi~~~~~~----------------~~~~~~l~~~~g~~~vP   70 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKE-----GLL--EFVDITATSDT----------------NEIQDYLQQLTGARTVP   70 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-----TSE--EEEEGGGSTTH----------------HHHHHHHHHHHSCCCSC
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCC-----Ccc--EEEEccCCCCH----------------HHHHHHHHHHhCCCCcC
Confidence            56799999999999998887653222     124  44555543100                00024677889999999


Q ss_pred             eEEEECCCCceEe
Q 018726          247 ALVLIGPDGKTIS  259 (351)
Q Consensus       247 ~~~lid~~G~v~~  259 (351)
                      +++ +  +|+.+.
T Consensus        71 ~i~-~--~g~~i~   80 (105)
T 1kte_A           71 RVF-I--GKECIG   80 (105)
T ss_dssp             EEE-E--TTEEEE
T ss_pred             eEE-E--CCEEEe
Confidence            974 4  566654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.89  E-value=6.9e-05  Score=61.71  Aligned_cols=42  Identities=14%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      .++++|+.|+.-.||+|+.+.+.+.++.+++.    .++.++.+.+
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~----~~~~~~~~~~   61 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP----EGAKFQKNHV   61 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcC----CceEEEEEec
Confidence            36889999999999999999999999998886    3445554443

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.88  E-value=4.1e-06  Score=70.51  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDR  209 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~  209 (351)
                      .++++||.||+.|||+|+.+.|.|   .++.++++    .++.+..+.++.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~----~~v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----EGVKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----TTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC----CCCEEEEeccCc
Confidence            468999999999999999999998   88888776    578888888874

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.85  E-value=3.8e-05  Score=54.27  Aligned_cols=53  Identities=13%  Similarity=0.318  Sum_probs=37.3

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++||++|+...+.|.+.          ++.+..++++.+.+                    .....+++++.++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~----------~i~~~~vdi~~~~~--------------------~~~~~~~~g~~~vP   52 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR----------GFDFEMINVDRVPE--------------------AAEALRAQGFRQLP   52 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEETTTCHH--------------------HHHHHHHTTCCSSC
T ss_pred             EEEEcCCCChhHHHHHHHHHHC----------CCCeEEEECCCCHH--------------------HHHHHHHhCCCccC
Confidence            5689999999999988877642          24566777776531                    11223358999999


Q ss_pred             eEE
Q 018726          247 ALV  249 (351)
Q Consensus       247 ~~~  249 (351)
                      +++
T Consensus        53 ~~~   55 (81)
T 1h75_A           53 VVI   55 (81)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.84  E-value=8.1e-05  Score=59.38  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEE--eCC---CCH--------------HHHHhh
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV--STD---RDH--------------KEFDLN  217 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v--~~d---~~~--------------~~~~~~  217 (351)
                      .+..-.++.+|+.|+.++||+|+++.+.+.++         .++.|+.+  .+.   .+.              ..|...
T Consensus         8 ~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l---------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~   78 (147)
T 3gv1_A            8 KEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM---------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW   78 (147)
T ss_dssp             EEEETTCCEEEEEEECTTCHHHHHHHHHHTTC---------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred             eeecCCCCEEEEEEECCCChhHHHHHHHHhhc---------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence            33334578999999999999999999887543         23555554  331   111              112111


Q ss_pred             hcc--CC--ceeeccCchhhHHHHHHcCcCceeeEEEECCCCce
Q 018726          218 HSI--MP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT  257 (351)
Q Consensus       218 ~~~--~~--~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v  257 (351)
                      +..  .+  .....-..+.+..+++.+||.++||+++  .+|++
T Consensus        79 ~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~  120 (147)
T 3gv1_A           79 MRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRT  120 (147)
T ss_dssp             HHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCE
T ss_pred             HhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEE
Confidence            111  11  0011122345778999999999999998  57764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.83  E-value=1.5e-05  Score=60.75  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             EEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCc
Q 018726          165 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  244 (351)
Q Consensus       165 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  244 (351)
                      ..++.|+++|||+|+...+.|.++...+     ++  +..++++.+.+                .......+.+.+|+.+
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-----~~--~~~vdi~~~~~----------------~~~~~~~l~~~~g~~~   75 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR-----GA--YEIVDIKEFKP----------------ENELRDYFEQITGGKT   75 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT-----TS--EEEEEGGGSSS----------------HHHHHHHHHHHHSCCS
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc-----Cc--eEEEEccCCCC----------------hHHHHHHHHHHhCCCC
Confidence            3467799999999999888775432110     11  55566654310                0011247888899999


Q ss_pred             eeeEEEECCCCceEe
Q 018726          245 IPALVLIGPDGKTIS  259 (351)
Q Consensus       245 ~P~~~lid~~G~v~~  259 (351)
                      +|++++   +|+.+.
T Consensus        76 vP~v~i---~g~~ig   87 (114)
T 2hze_A           76 VPRIFF---GKTSIG   87 (114)
T ss_dssp             SCEEEE---TTEEEE
T ss_pred             cCEEEE---CCEEEe
Confidence            998754   577653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.82  E-value=2.1e-05  Score=66.91  Aligned_cols=39  Identities=26%  Similarity=0.503  Sum_probs=31.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      .+|++++.|+.+|||+|+++.|.+.++.+    .+  +.++++.+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~  123 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAF  123 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEEC
Confidence            57899999999999999999999988654    23  66766544

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.74  E-value=3.1e-05  Score=64.79  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=38.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      ..+|++++.||++||++|+++.|.+.++.+++.++   +.++.+.++-
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~~   67 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIAF   67 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECCS
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEeccc
Confidence            36899999999999999999999999999987663   6777777653

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.73  E-value=8.5e-05  Score=51.41  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=39.6

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++||++|+...+.|+++          ++.+..++++.+.+                    ..+..+.+++.++|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~----------~i~~~~~di~~~~~--------------------~~~~~~~~~~~~vP   52 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA----------GLAYNTVDISLDDE--------------------ARDYVMALGYVQAP   52 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEETTTCHH--------------------HHHHHHHTTCBCCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc----------CCCcEEEECCCCHH--------------------HHHHHHHcCCCccC
Confidence            5679999999999998887643          24466667775421                    11222468999999


Q ss_pred             eEEEECCCCce
Q 018726          247 ALVLIGPDGKT  257 (351)
Q Consensus       247 ~~~lid~~G~v  257 (351)
                      ++++   +|+.
T Consensus        53 ~l~~---~g~~   60 (75)
T 1r7h_A           53 VVEV---DGEH   60 (75)
T ss_dssp             EEEE---TTEE
T ss_pred             EEEE---CCeE
Confidence            9873   5654

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.66  E-value=6.8e-05  Score=62.08  Aligned_cols=53  Identities=15%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             c-ccccC-CCCCeEEEEEeC-CCChhhh-hhhHHHHHHHHHH-hhcCCcE-EEEEEEecCC
Q 018726           34 K-VPLSS-CGGKTICLFFSA-NWCRPCK-TFTPQLVQLYDTL-RTRGTEL-EVIFISFDHD   88 (351)
Q Consensus        34 ~-~~~~~-~~gk~v~v~F~a-~wC~~C~-~~~p~~~~l~~~~-~~~~~~~-~iv~i~~d~~   88 (351)
                      + +++++ +.||+++|.||. .||+.|. ..++.+.+.++++ +..|  + .|+.||.|..
T Consensus        33 ~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~~~V~gvS~D~~   91 (182)
T 1xiy_A           33 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--FDDIYCITNNDI   91 (182)
T ss_dssp             EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--CSEEEEEESSCH
T ss_pred             eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeCCCH
Confidence            6 99988 699999888886 8999999 8999999999999 8887  7 4899999964

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=97.66  E-value=9.6e-05  Score=60.45  Aligned_cols=72  Identities=15%  Similarity=0.305  Sum_probs=56.3

Q ss_pred             cCcce-eeCCCC--c-ccccC-CCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEE-EEEEEecCChh--hHH
Q 018726           23 EGVEF-LLSRQG--K-VPLSS-CGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELE-VIFISFDHDEN--GFE   93 (351)
Q Consensus        23 ~~~~~-l~~~~g--~-~~~~~-~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~-iv~i~~d~~~~--~~~   93 (351)
                      ..+++ |. .+|  + +++++ +.||+++|.||. .||+.|....+.|.+.++++++.|  ++ |+.||.|.-..  .++
T Consensus        19 ~aPdf~l~-~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D~~~~~~~w~   95 (171)
T 2xhf_A           19 IIPDVLVY-EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVNDPFVMAAWG   95 (171)
T ss_dssp             BCCCCEEE-CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESSCHHHHHHHH
T ss_pred             CCCCeEEe-cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCHHHHHHHH
Confidence            44445 55 444  7 99999 599999999987 799999999999999999999887  75 99999996432  354


Q ss_pred             HHHh
Q 018726           94 EHFK   97 (351)
Q Consensus        94 ~~~~   97 (351)
                      +..+
T Consensus        96 ~~~~   99 (171)
T 2xhf_A           96 KTVD   99 (171)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            4443

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=0.0003  Score=57.89  Aligned_cols=129  Identities=11%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             HHhhhccCCCcEecCCCcceeec----ccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCC
Q 018726          137 EQLLAIEGRDYVLSRDHRKITVS----ELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDR  209 (351)
Q Consensus       137 ~~~~g~~~pdf~~~~~g~~~~l~----~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~  209 (351)
                      .+..|...|.|....-.+.+..+    .-.+|.++|++.++||+.|..+...+   .++.+-++    .++.+.+.+++.
T Consensus        25 ~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~----~nfV~w~~dv~~  100 (178)
T 2ec4_A           25 SSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS----QNFITWAWDLTK  100 (178)
T ss_dssp             HHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH----HTEEEEEEECCS
T ss_pred             HHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH----cCEEEEEEeCCC
Confidence            34446677877643333344444    55689999999999999998887433   33444444    456666666664


Q ss_pred             CH--HHHHhhhcc-CCceeeccCchhhHHHH---HHcCcCceeeEEEECCCC---ceEeccccceeeccCCcCCCCchhh
Q 018726          210 DH--KEFDLNHSI-MPWLAIPYEDRARQDLC---RIFNIKGIPALVLIGPDG---KTISTNGKEMISLYGAKAFPFTESR  280 (351)
Q Consensus       210 ~~--~~~~~~~~~-~~~~~~~~~~d~~~~~~---~~~~i~~~P~~~lid~~G---~v~~~~~~~~~~~~g~~~~p~~~~~  280 (351)
                      +.  +.+...+.. .+           ..++   +.|++.++|++++|++.|   +++.+       +.|..   ..++.
T Consensus       101 ~e~~~~~~~~~~~~~g-----------~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~-------~~G~~---~~~~l  159 (178)
T 2ec4_A          101 DSNRARFLTMCNRHFG-----------SVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNV-------IQGNT---TVDEL  159 (178)
T ss_dssp             HHHHHHHHHHHHHHTC-----------HHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEE-------ECSCC---CHHHH
T ss_pred             chhhhhhhhhhhhhhH-----------HHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEE-------EeCCC---CHHHH
Confidence            32  111111110 00           1233   458999999999998764   44444       55643   24445


Q ss_pred             HHHHHHHHHH
Q 018726          281 IAEIETALKK  290 (351)
Q Consensus       281 ~~~l~~~~~~  290 (351)
                      +..|.+.++.
T Consensus       160 l~~L~~~~e~  169 (178)
T 2ec4_A          160 MMRLMAAMEI  169 (178)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.63  E-value=7.7e-05  Score=52.61  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=37.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHH--HHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE--HFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~--~~~~~~~~~~~~~~~  109 (351)
                      ++.|+++||++|+++.+.+.++       +  +.+..++++.+.+....  .+....+|++..+|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~~~g~   59 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDL   59 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHHHHHHHHTTCCSSCEEEETTE
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------C--CCeEEEECCCCHHHHHHHHHhCCCccCEEEECCE
Confidence            5679999999999999888752       3  55777888766443222  244556778755654

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.61  E-value=0.00047  Score=50.13  Aligned_cols=62  Identities=15%  Similarity=0.336  Sum_probs=40.7

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH-cCcCce
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI-FNIKGI  245 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~  245 (351)
                      ++.|+.+|||+|.+....|.+          .++.+..++++.+.+.                   ...+.+. -|...+
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~----------~gi~y~~idi~~d~~~-------------------~~~~~~~~~G~~tV   56 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA----------NRIAYDEVDIEHNRAA-------------------AEFVGSVNGGNRTV   56 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH----------TTCCCEEEETTTCHHH-------------------HHHHHHHSSSSSCS
T ss_pred             EEEEcCCCCHhHHHHHHHHHh----------cCCceEEEEcCCCHHH-------------------HHHHHHHcCCCCEe
Confidence            567899999999987665543          3455667777766422                   1233333 377889


Q ss_pred             eeEEEECCCCceEe
Q 018726          246 PALVLIGPDGKTIS  259 (351)
Q Consensus       246 P~~~lid~~G~v~~  259 (351)
                      |++++  .||.++.
T Consensus        57 P~I~i--~Dg~~l~   68 (92)
T 2lqo_A           57 PTVKF--ADGSTLT   68 (92)
T ss_dssp             CEEEE--TTSCEEE
T ss_pred             CEEEE--eCCEEEe
Confidence            99776  5677653

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.56  E-value=0.00037  Score=59.78  Aligned_cols=45  Identities=7%  Similarity=0.141  Sum_probs=35.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHH-HHHHHHhhcccCCceEEEEEeCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQL-IEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l-~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      .++++|+.|+...||+|+++.+.+ .++.++|.+  ..++.++...+.
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~--~g~V~~v~~~~p   83 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYID--TGKMLYIFRHFP   83 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTT--TTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHccc--CCeEEEEEEeCC
Confidence            468999999999999999999864 678778842  256777776653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.53  E-value=4.4e-05  Score=59.57  Aligned_cols=63  Identities=14%  Similarity=0.292  Sum_probs=41.3

Q ss_pred             EEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceee
Q 018726          168 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  247 (351)
Q Consensus       168 l~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  247 (351)
                      +.|+++||++|+...+.|.++.        .  .+..+++|.+.+.                ......+.+.+++.++|+
T Consensus        30 vvf~~~~Cp~C~~~~~~L~~~~--------i--~~~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~   83 (130)
T 2cq9_A           30 VIFSKTSCSYCTMAKKLFHDMN--------V--NYKVVELDLLEYG----------------NQFQDALYKMTGERTVPR   83 (130)
T ss_dssp             EEEECSSCSHHHHHHHHHHHHT--------C--CCEEEETTTSTTH----------------HHHHHHHHHHHSSCCSSE
T ss_pred             EEEEcCCChHHHHHHHHHHHcC--------C--CcEEEECcCCcCc----------------HHHHHHHHHHhCCCCcCE
Confidence            3499999999999998887642        2  2445566643100                000235788899999999


Q ss_pred             EEEECCCCceEe
Q 018726          248 LVLIGPDGKTIS  259 (351)
Q Consensus       248 ~~lid~~G~v~~  259 (351)
                      ++ +  +|+.+.
T Consensus        84 l~-i--~G~~ig   92 (130)
T 2cq9_A           84 IF-V--NGTFIG   92 (130)
T ss_dssp             EE-E--TTEEEE
T ss_pred             EE-E--CCEEEc
Confidence            85 4  576654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.53  E-value=5e-05  Score=60.56  Aligned_cols=64  Identities=14%  Similarity=0.256  Sum_probs=41.0

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++|||+|+...+.|.++.        ..  +..+++|.+.+.                ......+.+.+|+.++|
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~--------i~--~~~vdId~~~~~----------------~~~~~~L~~~~g~~tvP  104 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMN--------VN--YKVVELDLLEYG----------------NQFQDALYKMTGERTVP  104 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT--------CC--CEEEEGGGCTTH----------------HHHHHHHHHHHSCCCSC
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CC--eEEEECccCcCC----------------HHHHHHHHHHhCCCCcC
Confidence            34499999999999998887652        22  334455432100                00023578889999999


Q ss_pred             eEEEECCCCceEe
Q 018726          247 ALVLIGPDGKTIS  259 (351)
Q Consensus       247 ~~~lid~~G~v~~  259 (351)
                      +++ +  +|+.+.
T Consensus       105 ~if-i--~G~~ig  114 (146)
T 2ht9_A          105 RIF-V--NGTFIG  114 (146)
T ss_dssp             EEE-E--TTEEEE
T ss_pred             eEE-E--CCEEEe
Confidence            985 4  676653

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.52  E-value=9.9e-05  Score=54.93  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=39.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh---h---hHHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---N---GFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~---~---~~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|+++||++|+++.+.+.++...+.    .  +.+++++.+.   +   .+.+.+....+|++..+|+
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~----~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g~   77 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG----L--LEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKE   77 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT----S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTE
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC----c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECCE
Confidence            566999999999999999886432211    1  6677887652   1   2445566666788866664

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.50  E-value=0.00017  Score=59.90  Aligned_cols=30  Identities=23%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHh
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNEL  192 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~  192 (351)
                      ++++||.|++.|||+|.++.|.+.++.+++
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence            689999999999999999999999998887

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.49  E-value=0.00011  Score=56.24  Aligned_cols=66  Identities=17%  Similarity=0.327  Sum_probs=42.3

Q ss_pred             EEEEecCCChhhHHh-HHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726          167 GLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  245 (351)
Q Consensus       167 ll~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  245 (351)
                      ++.|+++|||+|+.. .+.|.++.    .   ..+.+..+++|.+...                ......+.+.+|+.++
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~----~---~~i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~tv   83 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLK----V---PRSKVLVLQLNDMKEG----------------ADIQAALYEINGQRTV   83 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSC----C---CGGGEEEEEGGGSTTH----------------HHHHHHHHHHHSCCSS
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcC----C---CCCCeEEEECccCCCh----------------HHHHHHHHHHhCCCCc
Confidence            556999999999998 66654321    1   2255666777654200                0012468888999999


Q ss_pred             eeEEEECCCCceE
Q 018726          246 PALVLIGPDGKTI  258 (351)
Q Consensus       246 P~~~lid~~G~v~  258 (351)
                      |+++ +  +|+.+
T Consensus        84 P~vf-i--~g~~i   93 (118)
T 3c1r_A           84 PNIY-I--NGKHI   93 (118)
T ss_dssp             CEEE-E--TTEEE
T ss_pred             CEEE-E--CCEEE
Confidence            9874 4  56655

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.48  E-value=0.0001  Score=61.68  Aligned_cols=44  Identities=18%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      .++++++.|+.+|||+|+.+.|.+.++.+++.++   +.+..+.++-
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~~   66 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVVW   66 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECCC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCCC
Confidence            5899999999999999999999999998887653   5566555543

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.45  E-value=0.0001  Score=55.98  Aligned_cols=57  Identities=14%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEE---EEEEEecCCh------hhHHHHHhcCCceeeecChHH
Q 018726           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELE---VIFISFDHDE------NGFEEHFKCMPWLAVPFDETL  110 (351)
Q Consensus        45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~---iv~i~~d~~~------~~~~~~~~~~~~~~~~~~~~~  110 (351)
                      .++.|+++||++|+++.+.+.++       +  +.   +..+++|.+.      +.+.+.+....+|++.++|+.
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~-------~--~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~   85 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKF-------S--FKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTS   85 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTS-------C--BCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEETTEE
T ss_pred             CEEEEEeCCChhHHHHHHHHHHc-------C--CCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEE
Confidence            46779999999999999887652       2  34   7778887653      235555666667888777653

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.44  E-value=0.00013  Score=52.54  Aligned_cols=58  Identities=12%  Similarity=0.254  Sum_probs=40.5

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc-CcCce
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF-NIKGI  245 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~i~~~  245 (351)
                      ++.|+++||++|+...+.|.+.    .      +.+..++++ ..                    ....+.+.+ ++.++
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~----~------i~~~~vdv~-~~--------------------~~~~l~~~~~~~~~v   56 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK----G------VKYTDIDAS-TS--------------------LRQEMVQRANGRNTF   56 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH----T------CCEEEECSC-HH--------------------HHHHHHHHHHSSCCS
T ss_pred             EEEEECCCChhHHHHHHHHHHc----C------CCcEEEECC-HH--------------------HHHHHHHHhCCCCCc
Confidence            6679999999999988877653    1      234555555 10                    135677888 99999


Q ss_pred             eeEEEECCCCceE
Q 018726          246 PALVLIGPDGKTI  258 (351)
Q Consensus       246 P~~~lid~~G~v~  258 (351)
                      |++++   +|+.+
T Consensus        57 P~l~~---~g~~i   66 (89)
T 2klx_A           57 PQIFI---GDYHV   66 (89)
T ss_dssp             CEEEE---TTEEC
T ss_pred             CEEEE---CCEEE
Confidence            99854   56654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.41  E-value=0.00028  Score=58.88  Aligned_cols=109  Identities=17%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeC-------------------------------
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVST-------------------------------  207 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~-------------------------------  207 (351)
                      .++++|+.|+..+||+|..+.|.+   .++.+++.    +++.++.+.+                               
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~----~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g~~~~~~~~lf   95 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLP----EGTKMTKYHVEFLGPLGKELTQAWAVAMALGVEDKVTVPLF   95 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSC----TTCCEEEEECSSSSTTHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCC----CCcEEEEEecccccccCHHHHHHHHHHHHcCcHHHHHHHHH


Q ss_pred             ----------------------CCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccce
Q 018726          208 ----------------------DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEM  265 (351)
Q Consensus       208 ----------------------d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~  265 (351)
                                            .-+.+.+.+.++.   ..+.-....+...++.+||.++|+++|   +|+.+-.     
T Consensus        96 ~a~~~~~~~~~~~~L~~~a~~~Gld~~~~~~~~~s---~~~~~~v~~~~~~a~~~gv~gtPtfvv---nG~~~v~-----  164 (191)
T 3l9s_A           96 EAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNS---FVVKSLVAQQEKAAADLQLQGVPAMFV---NGKYQIN-----  164 (191)
T ss_dssp             HHHHTSCCCSSHHHHHHHHHHTTCCHHHHHHHHTS---HHHHHHHHHHHHHHHHTTCCSSSEEEE---TTTEEEC-----
T ss_pred             HHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhC---HHHHHHHHHHHHHHHHhCCcccCEEEE---CCEEEEC-----


Q ss_pred             eeccCCcCCC------CchhhHHHHHHH
Q 018726          266 ISLYGAKAFP------FTESRIAEIETA  287 (351)
Q Consensus       266 ~~~~g~~~~p------~~~~~~~~l~~~  287 (351)
                        ..|.....      ...+.++.|.++
T Consensus       165 --~~~~~~~~~~~~~~~~~~~i~~L~~k  190 (191)
T 3l9s_A          165 --PQGMDTSSMDVFVQQYADTVKYLVDK  190 (191)
T ss_dssp             --GGGSCCSSHHHHHHHHHHHHHHHHHC
T ss_pred             --ccccCCccchhhHHHHHHHHHHHHcC

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.40  E-value=0.00042  Score=48.70  Aligned_cols=60  Identities=15%  Similarity=0.293  Sum_probs=40.7

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++||++|+...+.|.+.    .      +.+..++++.+..                   ...++.+.+++.++|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~----~------i~~~~~~i~~~~~-------------------~~~~~~~~~~~~~vP   53 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK----G------VSFQELPIDGNAA-------------------KREEMIKRSGRTTVP   53 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----T------CCCEEEECTTCSH-------------------HHHHHHHHHSSCCSC
T ss_pred             EEEEECCCChhHHHHHHHHHHC----C------CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence            5678999999999988877653    1      2344556654310                   124567788999999


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      ++++   +|+.+
T Consensus        54 ~l~~---~g~~i   62 (82)
T 1fov_A           54 QIFI---DAQHI   62 (82)
T ss_dssp             EEEE---TTEEE
T ss_pred             EEEE---CCEEE
Confidence            9853   56655

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.40  E-value=0.00018  Score=59.93  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      .++++++.||.+||++|+.+.|.+.++.+++.++   +.+..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence            6899999999999999999999999999887653   556555543

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.37  E-value=0.00058  Score=49.33  Aligned_cols=60  Identities=13%  Similarity=0.222  Sum_probs=40.6

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+++||++|+...+.|.+.          ++.+..++++.+..                   ....+.+.+++.++|
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~----------~i~~~~~di~~~~~-------------------~~~~l~~~~~~~~vP   58 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK----------GAEFNEIDASATPE-------------------LRAEMQERSGRNTFP   58 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEESTTSHH-------------------HHHHHHHHHTSSCCC
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence            6679999999999988777542          23455666665421                   124566778999999


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      ++ ++  +|+.+
T Consensus        59 ~l-~~--~g~~i   67 (92)
T 2khp_A           59 QI-FI--GSVHV   67 (92)
T ss_dssp             EE-EE--TTEEE
T ss_pred             EE-EE--CCEEE
Confidence            75 44  56554

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.33  E-value=0.00025  Score=48.91  Aligned_cols=55  Identities=15%  Similarity=0.228  Sum_probs=36.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH--HHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE--EHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~--~~~~~~~~~~~~~~~~  109 (351)
                      ++.|+++||++|++..+.++++       +  +.+..++++.+.+...  +.+.....|++..+|.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~~g~   59 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDEARDYVMALGYVQAPVVEVDGE   59 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHHHHHHHHTTCBCCCEEEETTE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHHHHHHHHHcCCCccCEEEECCe
Confidence            5679999999999999888753       3  5577778876543222  1234445677766553

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.30  E-value=0.0007  Score=55.28  Aligned_cols=57  Identities=16%  Similarity=0.280  Sum_probs=43.8

Q ss_pred             CCCCcccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           30 SRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        30 ~~~g~~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +..+.+.+....++++++.|+.+|||+|..+.|.+.++.++|.+.+ .+.+++..+.-
T Consensus        15 ~~~~~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~   71 (175)
T 1z6m_A           15 NTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFDK   71 (175)
T ss_dssp             CSSSSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECCC
T ss_pred             CCCCCcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCCC
Confidence            3333355566688999999999999999999999999999883332 27788777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	3e-26
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	8e-11
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	5e-22
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	1e-17
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	1e-10
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	1e-13
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	1e-11
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	1e-10
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	0.003
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-06
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	2e-06
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-06
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	3e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	8e-05
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	0.004

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 99.9 bits (248), Expect = 3e-26
 Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
           VL      I +  LAGKT+  YF A WCPP R+FT QLI+ Y          FEV+L+S 
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA--EKKNFEVMLISW 70

Query: 208 DRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130

Query: 266 I-SLYGAKAFPFTE 278
           +     AK FP+  
Sbjct: 131 VVKDPEAKDFPWPN 144

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 25  VEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
              L      + L S  GKT+  +FSA+WC P + FTPQL+  Y     +    EV+ IS
Sbjct: 11  TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLIS 69

Query: 85  FDHDENGFEEHFKCMPWLAVPFD 107
           +D     F++++  MPWLA+PF+
Sbjct: 70  WDESAEDFKDYYAKMPWLALPFE 92

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.9 bits (215), Expect = 5e-22
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFW 328
           G+     TE R+ EIE    +     P++VK V H EHEL+L   + Y CD C+  G  W
Sbjct: 1   GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60

Query: 329 AFSCDVCNYDLHPKC 343
           ++ CD C++DLH KC
Sbjct: 61  SYHCDECDFDLHAKC 75

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 76.5 bits (187), Expect = 1e-17
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
            L     ++++  L GKT+ LYF A WCPPCR FT  L E Y +        FEVVL+S 
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH--VAKNFEVVLISW 70

Query: 208 DRDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEM 265
           D +  +F   +  MPWLA+P+ +     +L + F ++ IP L+ I  D G  I T  +  
Sbjct: 71  DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTR 130

Query: 266 I-SLYGAKAFPFT 277
           +        FP+ 
Sbjct: 131 VIEDPDGANFPWP 143

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 24  GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
           G   LLS+ G+V L S  GKT+ L+FSA+WC PC+ FTP L + Y+         EV+ I
Sbjct: 10  GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68

Query: 84  SFDHDENGFEEHFKCMPWLAVPFD 107
           S+D +E+ F +++  MPWLA+PFD
Sbjct: 69  SWDENESDFHDYYGKMPWLALPFD 92

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 65.5 bits (158), Expect = 1e-13
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 148 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 207
            L R   ++ V  LAGK +  YF A WCPP R FT QLIE Y++   + N          
Sbjct: 11  KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE 70

Query: 208 DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 265
           + D             +     +   Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 71  EEDGFAGYFAKMPWLAVPFAQSEA-VQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129

Query: 266 ISLYGAKAFPFTES 279
           +     + FP+ ++
Sbjct: 130 VKDPEGEQFPWKDA 143

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 15/105 (14%), Positives = 32/105 (30%)

Query: 156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 215
                +  K   ++F +  C  C+    Q+ E  ++ +   N     +  S D       
Sbjct: 22  TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKI 81

Query: 216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
              +    +  P    +   L   F  + +PA  +    G+    
Sbjct: 82  KETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF 126

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF--EVVLVSTDR 209
           D+R  +V     K   + F A WCP C S   Q  +   + K ++ +           ++
Sbjct: 12  DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK 71

Query: 210 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 260
              +F   ++ + +  +P        + +  NI   P+  LIG DG     
Sbjct: 72  KDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI 122

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
              +     K   + F A+WC  C +   Q  +     +     L +   S        +
Sbjct: 15  PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANL-ITVASPGFLHEKKD 73

Query: 94  EHFKCMPW 101
             F+    
Sbjct: 74  GDFQKWYA 81

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSI 220
           G  + +     WC  C++   +  E     + + N     V+V+ + + +  D   +   
Sbjct: 25  GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF----VMVNLEDEEEPKDEDFSPDG 80

Query: 221 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 274
                I + D + +    I N  G P+        + +    KE        AF
Sbjct: 81  GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 6/105 (5%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
                  + L GK   L+F   WCP C +    L +V                    R  
Sbjct: 13  SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI------ATRAD 66

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 256
                +      L     + A   +   +N+   PA V    DG 
Sbjct: 67  VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGT 111

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D +   +S+  GKT+ +   A WC PCR     L E+  +L         + + + D + 
Sbjct: 45  DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK 104

Query: 212 KEFDLNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTIST 260
            +  L  + +  L    + +A+  QDL  I    G+P  VL+ P G  I+T
Sbjct: 105 PKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 152 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 211
           D        L GK   L+F A WCP C+     + +V              +        
Sbjct: 14  DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQE 73

Query: 212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 262
                       LA          +   F +   PA   + P G      G
Sbjct: 74  FVNKYPVKTFTQLADT-----DGSVWANFGVTQQPAYAFVDPHGNVDVVRG 119

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 17/135 (12%)

Query: 158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 217
           +  +  +   L  G  WCP C+   + L           N    ++      D     L 
Sbjct: 49  LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLA 105

Query: 218 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 277
              +    +   D        +      P  VL G               L   KA  + 
Sbjct: 106 LERIAIPLVLVLDEEFNL---LGRFVERPQAVLDGGPQA-----------LAAYKAGDYL 151

Query: 278 ESRIAEIETALKKEG 292
           E  I ++   ++   
Sbjct: 152 EHAIGDVLAIIEGAA 166

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%)

Query: 163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 222
           GK + L   A WCP  R+    L ++             VV ++   D ++       + 
Sbjct: 20  GKPVLLNVWATWCPTSRAEHQYLNQLS-------AQGIRVVGMNYKDDRQKAISWLKELG 72

Query: 223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 282
                        L     + G P   LI  +G              G       E  I 
Sbjct: 73  NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR-------HAGDLNPRVWEEEIK 125

Query: 283 EIETALKKE 291
            +     KE
Sbjct: 126 PLWEKYSKE 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.92
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.92
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.91
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.91
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.91
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.9
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.9
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.88
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.87
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.87
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.87
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.86
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.83
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.83
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.82
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.81
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.79
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.78
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.77
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.76
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.76
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.75
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.75
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.75
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.72
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.72
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.71
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.71
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.69
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.69
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.67
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.64
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.64
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.63
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.63
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.62
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.61
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.6
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.6
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.59
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.58
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.57
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.56
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.56
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.56
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.55
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.55
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.55
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.53
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.53
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.53
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.51
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.5
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.49
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.46
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.46
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.45
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.45
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.44
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.44
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.42
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.41
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.41
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.41
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.4
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.4
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.39
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.39
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.38
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.37
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.36
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.36
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.35
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.34
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.33
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.32
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.3
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.3
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.28
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.28
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.26
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.25
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.24
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.24
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.24
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.24
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.23
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.22
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.21
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.2
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.2
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.2
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.18
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.17
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.16
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.16
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.15
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.15
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.13
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.13
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.12
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.12
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.12
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.11
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.11
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.06
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.05
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.04
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.04
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.03
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.99
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.97
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.94
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	98.93
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.87
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.87
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.87
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.87
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.86
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.83
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.81
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.81
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.8
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.75
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.75
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.72
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.71
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.65
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.65
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.62
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.57
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.52
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.5
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.49
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.48
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.45
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.44
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.36
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.35
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.34
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.29
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.23
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.2
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.04
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.96
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.91
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.85
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.83
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	97.74
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.56
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.31
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	96.78
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	96.78
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	96.63
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	96.57
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	96.26
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	96.15
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.96
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	95.95
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	95.94
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	95.72
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.61
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	95.06
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	94.93
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	94.9
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	94.57
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	94.56
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	94.31
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	94.27
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	93.98
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	93.97
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	93.9
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	93.9
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	93.89
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.83
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.68
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	93.43
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	93.38
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	93.3
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.18
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	93.18
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	92.79
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	92.64
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	92.6
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	92.3
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	92.03
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	89.87
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	88.18
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	87.37
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	86.74
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	85.92
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	84.82
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	81.8
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	81.08

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.8e-25  Score=186.69  Aligned_cols=148  Identities=11%  Similarity=0.110  Sum_probs=118.3

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC-------CC
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RD  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~  210 (351)
                      .+|.++|||++ +.+|+.++|++++||++||+||++|||+|++++|.|++++++|+    .++.+++|+..       .+
T Consensus         7 ~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~----~~v~~v~i~snd~~~~~~~~   82 (187)
T d2cvba1           7 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR----GKVAFVGINANDYEKYPEDA   82 (187)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT----TTEEEEEEECCCTTTCGGGS
T ss_pred             CCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcc----ccceeeeeeccccccccccc
Confidence            46999999999 99999999999999999999999999999999999999999997    46888888753       23


Q ss_pred             HHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHH
Q 018726          211 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK  290 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~  290 (351)
                      .+.++++.+..+ +.+|+..|.+..+++.|++.++|++||||++|+|+++++.+.  .++..    .+....+|.++++.
T Consensus        83 ~e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd--~~~~~----~~~~~~~L~~Ai~~  155 (187)
T d2cvba1          83 PEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVND--NPKDP----SKVQSHDLEAAIEA  155 (187)
T ss_dssp             HHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSS--CTTCG----GGCCCCHHHHHHHH
T ss_pred             hHHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecC--CCCCC----CCCCHHHHHHHHHH
Confidence            456677776655 568888888899999999999999999999999999854322  11211    12223456677777


Q ss_pred             hcCcCCC
Q 018726          291 EGDALPR  297 (351)
Q Consensus       291 ~~~~~p~  297 (351)
                      .+++.+.
T Consensus       156 ll~g~~~  162 (187)
T d2cvba1         156 LLRGEEP  162 (187)
T ss_dssp             HHTTCCC
T ss_pred             HHcCCCC
Confidence            7776654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.92  E-value=5.6e-25  Score=176.26  Aligned_cols=123  Identities=37%  Similarity=0.697  Sum_probs=110.2

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  217 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  217 (351)
                      .++..+|+++. ..+|.++++++++||+++|+|||+||++|+.++|.|+++++++..  +.+++|++|+.|.+.+++.++
T Consensus         3 ~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~--~~~~~vi~is~d~~~~~~~~~   80 (144)
T d1o73a_           3 GLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISWDENESDFHDY   80 (144)
T ss_dssp             GGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHH
T ss_pred             CcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhh--ccCeEEEEEecchhHHHHHHH
Confidence            46788999998 888889999999999999999999999999999999999999963  368999999999999999999


Q ss_pred             hccCCceeeccCch-hhHHHHHHcCcCceeeEEEECCC-CceEecccc
Q 018726          218 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK  263 (351)
Q Consensus       218 ~~~~~~~~~~~~~d-~~~~~~~~~~i~~~P~~~lid~~-G~v~~~~~~  263 (351)
                      +...+|..+++..+ ....+.+.|++.++|+++|||++ |+|+.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~  128 (144)
T d1o73a_          81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR  128 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHH
T ss_pred             HHhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecch
Confidence            99999988888654 45579999999999999999997 899988653

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.8e-24  Score=171.85  Aligned_cols=133  Identities=23%  Similarity=0.459  Sum_probs=116.1

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      |.++|+|++ +.+|+++++++++||+++|+||++||++|+.+++.++++++++.+   .++.+++|+++.+..+++++.+
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~i~~~~~~~~~~~~~~   78 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFMK   78 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHHH
T ss_pred             cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccc---cccccccccccchhhhHHHHHH
Confidence            789999999 999999999999999999999999999999999999999999986   7899999999988889999888


Q ss_pred             cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHH
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETAL  288 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~  288 (351)
                      .++ ..+|+..|....+++.|++.++|+++|+|++|+|+++       ..|.    .+++.++++.+.+
T Consensus        79 ~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~-------~~G~----~~~~~~~~~l~~l  135 (137)
T d1st9a_          79 SYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV-------VTGT----MTESMIHDYMNLI  135 (137)
T ss_dssp             HTT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEE-------EESC----CCHHHHHHHHHHH
T ss_pred             HcC-CCccccccccchhhhhhhccccceEEEECCCCEEEEE-------EECC----CCHHHHHHHHHhh
Confidence            766 4567777777899999999999999999999999988       3442    2455566665544

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=1.2e-24  Score=172.07  Aligned_cols=114  Identities=22%  Similarity=0.272  Sum_probs=103.2

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhc
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  219 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  219 (351)
                      |++.++|++ +.+|+++++++++||++||+||++|||+|+.++|.|+++++++     .++.+++|+.+.+...+.++.+
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~-----~~v~~v~v~~~~~~~~~~~~~~   75 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN-----PAVTFVGIATRADVGAMQSFVS   75 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhh-----ccccccccccccchhhhhhhhh
Confidence            567899999 9999999999999999999999999999999999999998865     4688999999988888888888


Q ss_pred             cCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          220 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .++ +.+|...|....+++.|++.++|+++|||++|++++.
T Consensus        76 ~~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v  115 (134)
T d1lu4a_          76 KYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFV  115 (134)
T ss_dssp             HHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             hhc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEE
Confidence            776 5677777778899999999999999999999999765

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.91  E-value=3.4e-24  Score=171.44  Aligned_cols=115  Identities=42%  Similarity=0.769  Sum_probs=103.4

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      +.+|.++++++++||+++|+|||+||++|+.++|.|+++++++++  +.+++|++|+.|.+.+++.++++.++|..+++.
T Consensus        15 ~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~--~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~   92 (144)
T d1i5ga_          15 KGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE--KKNFEVMLISWDESAEDFKDYYAKMPWLALPFE   92 (144)
T ss_dssp             ETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             cCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHh--ccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence            777889999999999999999999999999999999999999974  357999999999999999999999999888887


Q ss_pred             chh-hHHHHHHcCcCceeeEEEECCC-CceEecccccee
Q 018726          230 DRA-RQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI  266 (351)
Q Consensus       230 ~d~-~~~~~~~~~i~~~P~~~lid~~-G~v~~~~~~~~~  266 (351)
                      ... ...+.+.|+|.++|+++|||++ |+|+..+|+..+
T Consensus        93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v  131 (144)
T d1i5ga_          93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV  131 (144)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred             ChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHH
Confidence            654 3468899999999999999996 999998776654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.90  E-value=8.7e-24  Score=169.27  Aligned_cols=123  Identities=37%  Similarity=0.695  Sum_probs=111.1

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  218 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  218 (351)
                      ++..+|+|++ +.+|+++++++++||+++|+||++||++|+.++|.|.++++++..  ..++.+++|+.|.+.+++..++
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~--~~~~~~v~is~d~~~~~~~~~~   79 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE--SKNFEVVFCTWDEEEDGFAGYF   79 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHHHH
T ss_pred             CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccc--ccccccccccccccHHHHHHHH
Confidence            4678999999 999999999999999999999999999999999999999999974  3579999999999999999999


Q ss_pred             ccCCceeeccCc-hhhHHHHHHcCcCceeeEEEECCC-CceEeccccc
Q 018726          219 SIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKE  264 (351)
Q Consensus       219 ~~~~~~~~~~~~-d~~~~~~~~~~i~~~P~~~lid~~-G~v~~~~~~~  264 (351)
                      ....+..+++.. +....+.+.|++.++|+++|||++ |+|+..+++.
T Consensus        80 ~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~  127 (144)
T d1o8xa_          80 AKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA  127 (144)
T ss_dssp             TTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred             hhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechh
Confidence            988888888765 456789999999999999999998 8999887643

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=9.1e-24  Score=167.03  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=101.4

Q ss_pred             CCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCc
Q 018726          145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW  223 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~  223 (351)
                      .||++ +.+|+++++++++||++||+||++||++|+.++|.|.+++++++     ++.+++|+.++.......++..+++
T Consensus         6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----~~~~v~v~~~d~~~~~~~~~~~~~~   80 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLDQVPAMQEFVNKYPV   80 (134)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHHHTTC
T ss_pred             cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-----ccccccccccccchhHHHHHHhcCC
Confidence            57999 99999999999999999999999999999999999999999875     4677888888888888899988887


Q ss_pred             eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ..++...|....+.+.|++.++|+++|||++|+|++..
T Consensus        81 ~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~  118 (134)
T d1zzoa1          81 KTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR  118 (134)
T ss_dssp             TTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred             cceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence            77888888788999999999999999999999997753

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.88  E-value=4.1e-23  Score=165.07  Aligned_cols=110  Identities=23%  Similarity=0.322  Sum_probs=99.0

Q ss_pred             Ee-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CHHHHHhhhccC
Q 018726          148 VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DHKEFDLNHSIM  221 (351)
Q Consensus       148 ~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~  221 (351)
                      ++ +.+|+++++++++||++||+|||+||++|+.++|.|++++++++.   .++.+++|+.+.     ...+..+++...
T Consensus         7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~i~v~~~~~~~~~~~~~~~~~~~~~   83 (143)
T d2fy6a1           7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF---SSANLITVASPGFLHEKKDGDFQKWYAGL   83 (143)
T ss_dssp             TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG---TTSEEEEEECTTSTTCCCTTHHHHHHTTS
T ss_pred             eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc---CCcEEEEEeeeecccccchhhhhhhhhhc
Confidence            45 899999999999999999999999999999999999999999986   789999999753     335667777777


Q ss_pred             CceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          222 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       222 ~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+..+|+..|....+++.|++.++|+++|||++|+|+++
T Consensus        84 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~  122 (143)
T d2fy6a1          84 NYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI  122 (143)
T ss_dssp             CCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             CCcccccccccchHHHHHcCCCccCEEEEECCCCEEEEE
Confidence            778888888888899999999999999999999999988

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=6.7e-23  Score=163.82  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=101.6

Q ss_pred             hhccCCCcEe-c--CCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CH
Q 018726          140 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH  211 (351)
Q Consensus       140 ~g~~~pdf~~-~--~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~  211 (351)
                      +|.++|+|+. +  .+|+.++++.++||+++|+||++||++|+.++|.|++++++++    +++.+++|+++.     +.
T Consensus         3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~----~~~~~i~v~~~~~~~~~~~   78 (143)
T d2b5xa1           3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----DQLNVVAVHMPRSEDDLDP   78 (143)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEECCCSTTTSSH
T ss_pred             CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhh----ccccceeEEeeccccccch
Confidence            6889999996 3  5899999999999999999999999999999999999999997    568899998753     34


Q ss_pred             HHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ..++++.+.+++ .+|+..|.+..+.+.|++.++|++++||++|+|+++.
T Consensus        79 ~~~~~~~~~~~~-~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~  127 (143)
T d2b5xa1          79 GKIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ  127 (143)
T ss_dssp             HHHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred             hhhhhHHHhhcc-CccccccCccchHHHcCCCcCCEEEEECCCCEEEEEE
Confidence            566777777763 6777777788999999999999999999999999883

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.87  E-value=6.8e-23  Score=163.99  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=95.1

Q ss_pred             cCCCcEe-cCCC--------cceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018726          143 EGRDYVL-SRDH--------RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  213 (351)
Q Consensus       143 ~~pdf~~-~~~g--------~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  213 (351)
                      ++|+|++ ...|        ..+++++++||++||+||++||++|+.++|.++++++.+      ++.+++|+.+....+
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~------~~~~~~i~~~~~~~~   75 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK------RFQLVGINYKDAADN   75 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT------TSEEEEEEESCCHHH
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc------CceeEEEEeeechHH
Confidence            5666665 4444        678899999999999999999999999999998875543      468999999988888


Q ss_pred             HHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          214 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ..++...+++...+...|....+.+.|++.++|+++|||++|+|+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~  123 (144)
T d1knga_          76 ARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL  123 (144)
T ss_dssp             HHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             HHHHHHHcCCccccccccccchhhhhcCccccceEEEEcCCCeEEEEE
Confidence            888888777555556667778999999999999999999999999883

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=8.5e-23  Score=161.79  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=90.7

Q ss_pred             cCCCcceeeccc-CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      +..|+.++.+.+ +||++||+|||+||++|+.++|.|+++++       .++.+++++.+.+......++...++...+.
T Consensus         6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~-------~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~   78 (136)
T d1z5ye1           6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA-------QGIRVVGMNYKDDRQKAISWLKELGNPYALS   78 (136)
T ss_dssp             SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH-------TTCCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred             cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh-------hhhhhcccccccchhhhHHHHHHcCCcccee
Confidence            566889999898 89999999999999999999999988754       4577999999988888888887666555555


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEecc
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~~  261 (351)
                      ..|.+..+.+.|++.++|+++|||++|+|+++.
T Consensus        79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~  111 (136)
T d1z5ye1          79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH  111 (136)
T ss_dssp             EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEE
T ss_pred             ecccchhHHHhcccCCcceEEEEcCCCEEEEEE
Confidence            666678899999999999999999999999883

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.86  E-value=1e-21  Score=162.44  Aligned_cols=117  Identities=29%  Similarity=0.430  Sum_probs=99.4

Q ss_pred             hccCCCcEe-cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-CHHHHHhhh
Q 018726          141 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHKEFDLNH  218 (351)
Q Consensus       141 g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~  218 (351)
                      +.++|+|++ +.+|+.+++++++||++||+||++||++|+.+.+.++++++++..   .++.|++|++|. +.++++++.
T Consensus        33 ~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~d~~~~~~~~~~~  109 (176)
T d1jfua_          33 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---PNFEVVAINIDTRDPEKPKTFL  109 (176)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB---TTEEEEEEECCCSCTTHHHHHH
T ss_pred             CCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccc---cccccccccccccchhhhhhhH
Confidence            457999999 999999999999999999999999999999999999999999986   889999999985 566788888


Q ss_pred             ccCCceeeccCchhh----HHHHHHcCcCceeeEEEECCCCceEec
Q 018726          219 SIMPWLAIPYEDRAR----QDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       219 ~~~~~~~~~~~~d~~----~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +..++...++..+..    ..+...|++.++|+++|||++|+|+++
T Consensus       110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~  155 (176)
T d1jfua_         110 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  155 (176)
T ss_dssp             HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             hhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence            877754444444433    345556678899999999999999988

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.83  E-value=3.6e-21  Score=156.62  Aligned_cols=140  Identities=19%  Similarity=0.284  Sum_probs=109.8

Q ss_pred             hhccCCCcEe-cCCCcceeeccc--CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~--~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      +|+++|+|++ +.+|+.++++++  +||++||+|| ++|||+|..+++.++++++++.+   .++.+++|+.| +....+
T Consensus         4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d-~~~~~~   79 (160)
T d2cx4a1           4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISVD-SPWCLK   79 (160)
T ss_dssp             TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTST---TCCEEEEEESS-CHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccc---ccccccccccc-chhhhh
Confidence            6999999999 999999999998  7999999998 89999999999999999999986   88999999988 444455


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcC----------ceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHH
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIK----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE  285 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~----------~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~  285 (351)
                      ++....+ +.+++..|.+..+++.||+.          ..|++||||++|+|++++       .+.  .+..+..++++.
T Consensus        80 ~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~-------~~~--~~~~~~~~~eil  149 (160)
T d2cx4a1          80 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW-------VTD--NPLNEPDYDEVV  149 (160)
T ss_dssp             HHHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE-------ECS--STTCCCCHHHHH
T ss_pred             hhcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEE-------EeC--CCCCCCCHHHHH
Confidence            5544333 34566677788999999873          468899999999999884       222  133444566666


Q ss_pred             HHHHHhcC
Q 018726          286 TALKKEGD  293 (351)
Q Consensus       286 ~~~~~~~~  293 (351)
                      +++++.+.
T Consensus       150 ~~l~~l~~  157 (160)
T d2cx4a1         150 REANKIAG  157 (160)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcc
Confidence            66666544

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.83  E-value=9.5e-21  Score=154.57  Aligned_cols=119  Identities=24%  Similarity=0.245  Sum_probs=98.5

Q ss_pred             HhhhccCCCcEe-cC----CCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018726          138 QLLAIEGRDYVL-SR----DHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  211 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~----~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  211 (351)
                      +++|.++|+|++ +.    ++.++++++++||++||+||.. |||+|..+++.|.+++++|.+   .+++|++||.|. .
T Consensus         1 ~lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~---~g~~vv~IS~D~-~   76 (166)
T d1we0a1           1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK---LGVEVYSVSTDT-H   76 (166)
T ss_dssp             CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH---TTEEEEEEESSC-H
T ss_pred             CCCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc---cceEEEeccccc-H
Confidence            368999999999 43    3457999999999999999976 999999999999999999987   899999999995 3


Q ss_pred             HHHHhhhccC---CceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          212 KEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                      ...+++.+.+   .-..+|+..|+...++++||+.      ..|++||||++|+|++.
T Consensus        77 ~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~  134 (166)
T d1we0a1          77 FVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAI  134 (166)
T ss_dssp             HHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEE
Confidence            3333333322   1256788888889999999984      57889999999999887

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=2.5e-20  Score=152.93  Aligned_cols=119  Identities=15%  Similarity=0.211  Sum_probs=102.0

Q ss_pred             hhccCCCcEe-cCCC---------------cceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEE
Q 018726          140 LAIEGRDYVL-SRDH---------------RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEV  202 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g---------------~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~v  202 (351)
                      +|+++|+|++ +..|               +.+++++++||++||+|| ++|||+|..+++.+.+++++|++   .++++
T Consensus         5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~---~g~~v   81 (169)
T d2bmxa1           5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQI   81 (169)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEE
T ss_pred             CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccc---cCcce
Confidence            6999999999 7666               578899999999999998 99999999999999999999987   88999


Q ss_pred             EEEeCCCCH--HHHHhhhccCCceeeccCchhhHHHHHHcCc-----CceeeEEEECCCCceEecc
Q 018726          203 VLVSTDRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       203 v~v~~d~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i-----~~~P~~~lid~~G~v~~~~  261 (351)
                      ++|+.|...  .+|...........+|+..|.+..+++.||+     ...|++||||++|+|++..
T Consensus        82 v~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~  147 (169)
T d2bmxa1          82 LGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS  147 (169)
T ss_dssp             EEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred             eeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEE
Confidence            999999643  3444444444456788888889999999998     6789999999999998873

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.81  E-value=4.8e-20  Score=150.88  Aligned_cols=119  Identities=18%  Similarity=0.268  Sum_probs=98.5

Q ss_pred             hhhccCCCcE----e-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH-
Q 018726          139 LLAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-  211 (351)
Q Consensus       139 ~~g~~~pdf~----~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-  211 (351)
                      .+|++||||+    + +.+|++++|++++||++||+|| ++||++|..+++.|++++++|++   .++.|++|+.|... 
T Consensus         4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~---~~~~v~~is~d~~~~   80 (167)
T d1e2ya_           4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE---INTEVISCSCDSEYS   80 (167)
T ss_dssp             CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT---TTEEEEEEESSCHHH
T ss_pred             cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhc---CceEEEeecCCcHHh
Confidence            4799999998    4 6789999999999999999998 99999999999999999999987   89999999998643 


Q ss_pred             -HHHHhhhccCC---ceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          212 -KEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 -~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                       .++....+...   -..++...|....+++.|++.      ..|++||||++|+|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~  139 (167)
T d1e2ya_          81 HLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQI  139 (167)
T ss_dssp             HHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEE
Confidence             23333222211   245666778888999999982      46899999999999877

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.79  E-value=4.8e-19  Score=147.56  Aligned_cols=119  Identities=15%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             hhccCCCcE----e-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          140 LAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       140 ~g~~~pdf~----~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      .+.+||||+    + +.+|+++++++++||++||+|| +.||+.|..+++.|.+++++|.+   .+++|++||.|...  
T Consensus         5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~---~g~~VlgIS~Ds~~s~   81 (194)
T d1uula_           5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSMDSEYSH   81 (194)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred             cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhcc---CceEEEEEecCchhhh
Confidence            477999999    4 6788999999999999999999 99999999999999999999987   89999999999633  


Q ss_pred             HHHHhhhc---cCCceeeccCchhhHHHHHHcCc------CceeeEEEECCCCceEecc
Q 018726          212 KEFDLNHS---IMPWLAIPYEDRARQDLCRIFNI------KGIPALVLIGPDGKTISTN  261 (351)
Q Consensus       212 ~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i------~~~P~~~lid~~G~v~~~~  261 (351)
                      ..|.+..+   ...-+.+|+..|.+..+++.||+      ...|++||||++|+|++..
T Consensus        82 ~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~  140 (194)
T d1uula_          82 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT  140 (194)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             hhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEE
Confidence            44444333   22346788889999999999998      3578999999999999873

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=2.3e-19  Score=144.63  Aligned_cols=117  Identities=11%  Similarity=0.211  Sum_probs=92.7

Q ss_pred             hhccCCCcEe-cCCCcceeecccCCc-EEEE-EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELAGK-TIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~gk-~vll-~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      +|+++|+|++ +.+|+++++++++|| ++|+ +|+++|||+|..+++.|.++++++..   .+++|++|+.|. ....++
T Consensus         4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~---~~~~vi~vs~d~-~~~~~~   79 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN---DDSAALAISVGP-PPTHKI   79 (153)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS---SSEEEEEEESCC-HHHHHH
T ss_pred             CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcc---cccccccccchh-hhHHHH
Confidence            6999999999 999999999999995 4444 55699999999999999999999976   899999999984 555566


Q ss_pred             hhccCCceeecc--CchhhHHHHHHcCcC------ceeeEEEECCCCceEecc
Q 018726          217 NHSIMPWLAIPY--EDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~~~~~~--~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~~  261 (351)
                      +.+..++ .++.  ..+....+++.||+.      ..|++||||++|+|++.+
T Consensus        80 ~~~~~~~-~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~  131 (153)
T d1xvwa1          80 WATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE  131 (153)
T ss_dssp             HHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred             Hhhhhcc-ceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence            6654442 2332  233467899999873      346799999999998773

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.77  E-value=7.3e-19  Score=143.85  Aligned_cols=119  Identities=14%  Similarity=0.193  Sum_probs=99.9

Q ss_pred             hhhccCCCcEe-cCCC-----cceeecccCCc-EEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726          139 LLAIEGRDYVL-SRDH-----RKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g-----~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  210 (351)
                      ++|.+||||++ +.+|     +.++|+++.|| ++||+|| +.|||.|..+++.+++.+++|++   .+++|++|+.|..
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~---~g~~Vvgis~d~~   78 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSIDSE   78 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEESSCH
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhcc---CCeeEecccccch
Confidence            57999999999 7776     47999999996 8999999 89999999999999999999987   8999999999964


Q ss_pred             H--HHHHhhhccC---CceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEec
Q 018726          211 H--KEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~--~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~  260 (351)
                      .  ..|.+.....   ....++...|....+.+.||+.     ..|++||||++|+|++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~  138 (170)
T d1zofa1          79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA  138 (170)
T ss_dssp             HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred             hhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEE
Confidence            3  3444444322   2356777888889999999984     57899999999999876

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3.9e-19  Score=143.54  Aligned_cols=116  Identities=18%  Similarity=0.191  Sum_probs=96.3

Q ss_pred             hhccCCCcEe-cCCCcceeecccC--CcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          140 LAIEGRDYVL-SRDHRKITVSELA--GKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       140 ~g~~~pdf~~-~~~g~~~~l~~~~--gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      +|+++|+|++ +.+|+.++++++.  |++++++|| ++|||+|..+++.|.+.+++|+    ..+.+++|+.| +....+
T Consensus         7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~----~~~~~~~is~d-~~~~~~   81 (156)
T d2a4va1           7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELK----EYAAVFGLSAD-SVTSQK   81 (156)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHT----TTCEEEEEESC-CHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHh----hccceeeeccc-hhhhHH
Confidence            7999999999 9999999999984  567888887 8999999999999999999997    45678999988 566667


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcCcee-----eEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIP-----ALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P-----~~~lid~~G~v~~~~  261 (351)
                      ++.+.++ +.+|+..|++..+++.||+...|     ..++|+.+|++++++
T Consensus        82 ~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~  131 (156)
T d2a4va1          82 KFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR  131 (156)
T ss_dssp             HHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred             hhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence            7777665 56888889899999999986554     244555899998873

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.9e-18  Score=137.79  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=96.0

Q ss_pred             cCCCcEe----cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHHH
Q 018726          143 EGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD  215 (351)
Q Consensus       143 ~~pdf~~----~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~  215 (351)
                      +||+|++    +.+++.++|++++||++||+|| +.|||.|..+++.+++++++|.+   .+++|++||.|...  ..|.
T Consensus         2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~---~~~~vigIS~d~~~~~~~~~   78 (158)
T d1zyea1           2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSVDSHFSHLAWI   78 (158)
T ss_dssp             BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhc---CCceEEeccCcCHHHHHHHH
Confidence            6899986    4466789999999999999999 88999999999999999999987   89999999999643  3333


Q ss_pred             hhhcc---CCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          216 LNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       216 ~~~~~---~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                      .....   .....+|...|....+.+.||+.      +.|++||||++|+|++.
T Consensus        79 ~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~  132 (158)
T d1zyea1          79 NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  132 (158)
T ss_dssp             TSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEE
Confidence            33221   23467888889889999999984      57889999999999986

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.75  E-value=3.1e-18  Score=146.20  Aligned_cols=118  Identities=13%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             hhhccCCCcEe-cCCCcceeeccc---CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC--H
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSEL---AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--H  211 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~---~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~  211 (351)
                      ++|+++|+|++ +.+| ++.++++   +||++||+|| +.|||.|..+++.|.+++++|++   .+++|++||+|..  .
T Consensus         2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~---~g~~vigiS~Ds~~sh   77 (237)
T d2zcta1           2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSVDSVFSH   77 (237)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhcc---CCcceeeccCCcHHHH
Confidence            58999999999 7777 5777765   7999999998 99999999999999999999997   8999999999973  3


Q ss_pred             HHHHhhhcc--CCceeeccCchhhHHHHHHcCc-------CceeeEEEECCCCceEec
Q 018726          212 KEFDLNHSI--MPWLAIPYEDRARQDLCRIFNI-------KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~i-------~~~P~~~lid~~G~v~~~  260 (351)
                      ..|....+.  ...+.+|...|.+..+++.||+       ...|++||||++|+|++.
T Consensus        78 ~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~  135 (237)
T d2zcta1          78 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM  135 (237)
T ss_dssp             HHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred             HHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEE
Confidence            455554432  2347788889999999999998       468999999999999877

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=1.4e-18  Score=143.43  Aligned_cols=120  Identities=17%  Similarity=0.222  Sum_probs=100.7

Q ss_pred             HhhhccCCCcEe-c-CCC--cceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH-
Q 018726          138 QLLAIEGRDYVL-S-RDH--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-  211 (351)
Q Consensus       138 ~~~g~~~pdf~~-~-~~g--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-  211 (351)
                      +++|.++|+|.+ . .+|  .++++++++||++||+|| +.||+.|..+++.|++.+++|.+   .+++|++||.|... 
T Consensus         1 ~lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~---~~~~v~gIS~Ds~~s   77 (186)
T d1n8ja_           1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVSTDTHFT   77 (186)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHH
T ss_pred             CCCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccc---ccEEEEeccccCHHH
Confidence            368999999998 3 355  478899999999999999 77888899999999999999987   89999999999633 


Q ss_pred             -HHHHhhhccCCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          212 -KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 -~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                       .+|.+.........+|...|++..+++.||+.      ..|++||||++|+|++.
T Consensus        78 h~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~  133 (186)
T d1n8ja_          78 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI  133 (186)
T ss_dssp             HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence             45555544444567888999999999999983      46889999999999877

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.1e-18  Score=140.40  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=94.7

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|+++|+|++ +.+|+.++|++++||++||+|| +.|||+|..+++.|++++.++     .++.+++|+.| +....++
T Consensus        19 ~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~d-~~~~~~~   92 (164)
T d1qxha_          19 QAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI-----DNTVVLCISAD-LPFAQSR   92 (164)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS-----TTEEEEEEESS-CHHHHTT
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh-----ccceeeeEEcC-CHHHHHH
Confidence            47999999999 9999999999999999999888 679999999999999887765     46899999998 4555566


Q ss_pred             hhccCCc-eeeccCchhhHHHHHHcCcC---------ceeeEEEECCCCceEecc
Q 018726          217 NHSIMPW-LAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       217 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~---------~~P~~~lid~~G~v~~~~  261 (351)
                      +....+. ..+....+++..+.+.||+.         ..|++||||++|+|+++.
T Consensus        93 ~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~  147 (164)
T d1qxha_          93 FCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQ  147 (164)
T ss_dssp             CCSSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEE
Confidence            6555442 22333456678999999973         247899999999999873

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-17  Score=137.90  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=100.5

Q ss_pred             hhhccCCCcEe----cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018726          139 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  211 (351)
Q Consensus       139 ~~g~~~pdf~~----~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  211 (351)
                      .+|+++|+|++    +.++++++|++++||++||+|| +.||+.|..++..|++++++|.+   .+++|++||.|...  
T Consensus         6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~---~g~~vigIS~D~~~~~   82 (197)
T d1qmva_           6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK---LGCEVLGVSVDSQFTH   82 (197)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred             cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhcc---CCcEEEEEecCCHHHH
Confidence            58999999986    4567889999999999999999 89999999999999999999987   89999999999643  


Q ss_pred             HHHHhhhcc---CCceeeccCchhhHHHHHHcCcC------ceeeEEEECCCCceEec
Q 018726          212 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~v~~~  260 (351)
                      .+|......   ..-+.+|+..|..+.+++.||+.      ..|++|+||++|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~  140 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI  140 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEE
Confidence            334333321   22467889999999999999984      47899999999999886

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=7e-18  Score=138.48  Aligned_cols=123  Identities=20%  Similarity=0.338  Sum_probs=92.0

Q ss_pred             HHhhhccCCCcEe-cCCCcceeecccCCcEEEEEEecCCCh-hhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH
Q 018726          137 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH  211 (351)
Q Consensus       137 ~~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~  211 (351)
                      ...++.++|+|++ +.+|+.+++++++||++||+||.+||+ .|..+++.|.++++++.+ .+.++.+++|++|.   +.
T Consensus         4 ~~p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~-~~~~v~~v~isiDp~~Dtp   82 (172)
T d1xzoa1           4 KDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDPENDKP   82 (172)
T ss_dssp             CSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCH
T ss_pred             cCCCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcc-ccccccccccccccccchH
Confidence            3446788999999 999999999999999999999999998 599999999999999975 45679999999984   34


Q ss_pred             HHHHhhhccCC-----ceeeccCch-h-hHHHHHHcCcC-----------ceeeEEEECCCCceEec
Q 018726          212 KEFDLNHSIMP-----WLAIPYEDR-A-RQDLCRIFNIK-----------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       212 ~~~~~~~~~~~-----~~~~~~~~d-~-~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~  260 (351)
                      +..+++.+.++     |..+..... . .....+.|++.           ..|.+||||++|+|+..
T Consensus        83 ~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~  149 (172)
T d1xzoa1          83 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  149 (172)
T ss_dssp             HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             HHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence            56666666443     222222111 1 12233444431           24689999999999865

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=1.6e-17  Score=135.41  Aligned_cols=117  Identities=18%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             HhhhccCCCcEe-cCCCcceeecccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018726          138 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  215 (351)
Q Consensus       138 ~~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  215 (351)
                      +.+|+++|+|++ +.+|+.+++++++||++||+||+ .|||.|..+++.|++.++   +   .+++|++|+.|. .....
T Consensus        17 p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~---~---~g~~vv~Is~d~-~~~~~   89 (166)
T d1xvqa_          17 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAA---A---SGATVLCVSKDL-PFAQK   89 (166)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHH---H---TTCEEEEEESSC-HHHHT
T ss_pred             CCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcc---c---ccccccccccch-HHHHH
Confidence            367999999999 99999999999999999999995 478889999887765544   3   567899999984 44555


Q ss_pred             hhhccCCceeeccCchhhHHHHHHcCcC---------ceeeEEEECCCCceEecc
Q 018726          216 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~---------~~P~~~lid~~G~v~~~~  261 (351)
                      ++.+...........+....+.+.|++.         ..|++||||++|+|++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~  144 (166)
T d1xvqa_          90 RFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  144 (166)
T ss_dssp             TCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             HHHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEE
Confidence            5555544333333344456777888763         247899999999999873

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=2.5e-17  Score=133.79  Aligned_cols=116  Identities=17%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF  214 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~  214 (351)
                      .+|+++|+|++ +.+|+++++++++||++||.|| +.|||.|..+++.|.+.++++     .++.+++|+.|...  .++
T Consensus        17 ~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~d~~~~~~~~   91 (163)
T d1psqa_          17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSMDLPFAQKRW   91 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh-----cccceEEEEeccHHHHHHH
Confidence            47999999999 9999999999999999999998 679999999999888776665     45889999988532  344


Q ss_pred             HhhhccCCceeeccCchhhHHHHHHcCcCc------eeeEEEECCCCceEecc
Q 018726          215 DLNHSIMPWLAIPYEDRARQDLCRIFNIKG------IPALVLIGPDGKTISTN  261 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~------~P~~~lid~~G~v~~~~  261 (351)
                      ..........  ....+....+.+.||+..      .|++||||++|+|++.+
T Consensus        92 ~~~~~~~~~~--~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~  142 (163)
T d1psqa_          92 CGAEGLDNAI--MLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             HHHHTCTTSE--EEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             HHHcCCccee--eeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEE
Confidence            3333322211  223334567889998742      34689999999999873

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-17  Score=137.78  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=99.0

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCC-cEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  213 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~g-k~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  213 (351)
                      ++|+++|+|++ +.+|+ ++++++.| |++||+|| +.||+.|..++..+++.+++|.+   .+++|++||+|...  .+
T Consensus         2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~---~g~~v~giS~Ds~~sh~~   77 (220)
T d1prxa_           2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSIDSVEDHLA   77 (220)
T ss_dssp             CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc---ccceeeccccccccchhh
Confidence            47999999999 77775 99999987 78999988 67999999999999999999997   89999999999633  44


Q ss_pred             HHhhhc------cCCceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEec
Q 018726          214 FDLNHS------IMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~------~~~~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~  260 (351)
                      |.+...      ...-+.+|...|.+..+++.||+.            ..+++||||++|+|++.
T Consensus        78 ~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~  142 (220)
T d1prxa_          78 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS  142 (220)
T ss_dssp             HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred             hhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEE
Confidence            444432      112367888999999999999984            46889999999999887

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=6.3e-17  Score=131.46  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=92.6

Q ss_pred             hhhccCCCcEe-cCCCcceeecccCCcEEEEEEecC-CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHh
Q 018726          139 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  216 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g~~~~l~~~~gk~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  216 (351)
                      .+|+++|+|++ +.+|++++|++++||++||+||.. |||.|..+++.|++.+++++     ++.|++|++|. ....++
T Consensus        17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----~~~vi~iS~d~-~~~~~~   90 (164)
T d1q98a_          17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----NTIVLCISADL-PFAQAR   90 (164)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----TEEEEEEESSC-HHHHTT
T ss_pred             CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----cceEEeecCCc-HHHHHH
Confidence            58999999999 999999999999999999999955 77779999999999999884     48999999984 445556


Q ss_pred             hhccCCceee-ccCchhhHHHHHHcCcC-------c--eeeEEEECCCCceEec
Q 018726          217 NHSIMPWLAI-PYEDRARQDLCRIFNIK-------G--IPALVLIGPDGKTIST  260 (351)
Q Consensus       217 ~~~~~~~~~~-~~~~d~~~~~~~~~~i~-------~--~P~~~lid~~G~v~~~  260 (351)
                      +....+...+ ....+....+.+.|++.       +  .|++||||++|+|++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~  144 (164)
T d1q98a_          91 FCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS  144 (164)
T ss_dssp             CTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             HHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence            5555543222 33344456788888863       2  4889999999999987

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=1.3e-17  Score=119.06  Aligned_cols=78  Identities=40%  Similarity=0.813  Sum_probs=73.8

Q ss_pred             CCcCCCCchhhHHHHHHHHHHhcCcCCCccccCCCc-ceeeeecCCceeeccccCCCceEEEEcCCCCCCCCccccCcc
Q 018726          270 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       270 g~~~~p~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~-~~l~l~~~~~~~Cd~C~~~~~~~~~~c~~~~~~~~~~c~~~~  347 (351)
                      |+.+||+++.+..++..++.+.-..+|..+.|..|+ |+|.+.....++|+.|++.+.||.|+|..|+|+||..||+.+
T Consensus         1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P   79 (89)
T d1v5na_           1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNE   79 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCS
T ss_pred             CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCC
Confidence            567899999999999999999999999999999995 999999888999999999999999999999999999999854

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.64  E-value=2.3e-16  Score=125.25  Aligned_cols=79  Identities=39%  Similarity=0.880  Sum_probs=71.3

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeee
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP  105 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (351)
                      .+++.+|. +++++++||+|+|+|||+||++|+.++|.+.++++++++.+ .+++++|+.|.+.+.+.++++..++..++
T Consensus        12 ~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~-~~~vi~vs~D~~~~~~~~~~~~~~~~~~~   90 (144)
T d1i5ga_          12 NVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWLALP   90 (144)
T ss_dssp             EEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred             hhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhcc-CcEEEEEeccccHHHHHHHHHhCCCCcee
Confidence            35667788 99999999999999999999999999999999999997752 48999999999888899999999988888


Q ss_pred             c
Q 018726          106 F  106 (351)
Q Consensus       106 ~  106 (351)
                      +
T Consensus        91 ~   91 (144)
T d1i5ga_          91 F   91 (144)
T ss_dssp             T
T ss_pred             e
Confidence            7

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.4e-16  Score=119.44  Aligned_cols=75  Identities=27%  Similarity=0.606  Sum_probs=66.6

Q ss_pred             ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       158 l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      +++..||++||+|||+||++|+.+.|.+++++++++    +.+.++.|..|..                       ..++
T Consensus        20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~~i~~d~~-----------------------~~l~   72 (111)
T d1xwaa_          20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDVDEC-----------------------EDIA   72 (111)
T ss_dssp             HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------HHHH
T ss_pred             HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcc----cceEEEEEEeecC-----------------------cchh
Confidence            455578999999999999999999999999999987    5688888888864                       6789


Q ss_pred             HHcCcCceeeEEEECCCCceEec
Q 018726          238 RIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       238 ~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++|+|.++||++++ ++|+++.+
T Consensus        73 ~~~~V~~~Pt~~~~-~~G~~v~~   94 (111)
T d1xwaa_          73 MEYNISSMPTFVFL-KNGVKVEE   94 (111)
T ss_dssp             HHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             hcCCCccccEEEEE-ECCEEEEE
Confidence            99999999999999 89998877

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.63  E-value=6e-16  Score=116.02  Aligned_cols=71  Identities=27%  Similarity=0.508  Sum_probs=64.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+|||+||++|+.+.|.+.+++++++    +++.++.|++|..                       ..++++|+
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   68 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNVDEN-----------------------PETTSQFG   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcC----CceEEEEEECCCC-----------------------cccHHHCC
Confidence            46899999999999999999999999999987    5789999998875                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        69 V~~~Pt~~~~-~~G~~~~~   86 (105)
T d1nw2a_          69 IMSIPTLILF-KGGEPVKQ   86 (105)
T ss_dssp             CCBSSEEEEE-ETTEEEEE
T ss_pred             cceeeEEEEE-ECCEEEEE
Confidence            9999999999 78988877

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.63  E-value=5.7e-16  Score=126.32  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=94.1

Q ss_pred             cCCCcEe-c----CCCcceeecccCC-cEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018726          143 EGRDYVL-S----RDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  213 (351)
Q Consensus       143 ~~pdf~~-~----~~g~~~~l~~~~g-k~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  213 (351)
                      +||||++ +    .++++++|+++.| |++||+|| +.|||.|..++..+++.+++|.+   .++.|++|+.|...  .+
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~---~g~~vigIS~D~~~~~~~   77 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSVDSKFTHLA   77 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHHHH
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhc---CCeeEecccCCcHHHHHh
Confidence            5899998 3    4456899999998 78999998 89999999999999999999997   89999999999633  33


Q ss_pred             HHhhhccC---CceeeccCchhhHHHHHHcCcC-----ceeeEEEECCCCceEec
Q 018726          214 FDLNHSIM---PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~v~~~  260 (351)
                      |.+.....   .-..+|...|....+.+.||+.     ..++++|||++|+|++.
T Consensus        78 ~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~  132 (170)
T d2h01a1          78 WKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHL  132 (170)
T ss_dssp             HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred             HhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEE
Confidence            43333221   2356778888899999999983     46799999999999887

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.62  E-value=1e-15  Score=121.59  Aligned_cols=79  Identities=44%  Similarity=0.921  Sum_probs=68.8

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      ++..+|. +++++++||+|+|+|||+||++|+.++|.+.++++++... ..++++.|+.|.+.+.+.+++...++..+++
T Consensus        13 ~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T d1o73a_          13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKMPWLALPF   91 (144)
T ss_dssp             CBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             eeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHHhccccceee
Confidence            4455566 9999999999999999999999999999999999999643 2399999999988888888888888888888


Q ss_pred             C
Q 018726          107 D  107 (351)
Q Consensus       107 ~  107 (351)
                      +
T Consensus        92 ~   92 (144)
T d1o73a_          92 D   92 (144)
T ss_dssp             T
T ss_pred             e
Confidence            4

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.61  E-value=2.5e-15  Score=113.01  Aligned_cols=71  Identities=27%  Similarity=0.543  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|.|||+||++|+.+.|.+.++.+++.    .++.++.|++|..                       ..++++|+
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~   70 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNTDES-----------------------PNVASEYG   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhc----ccceEEEEecccc-----------------------hhHHHHhc
Confidence            36899999999999999999999999988887    6778999998865                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        71 V~~~Pt~~~~-~~G~~v~~   88 (107)
T d1dbya_          71 IRSIPTIMVF-KGGKKCET   88 (107)
T ss_dssp             CCSSCEEEEE-SSSSEEEE
T ss_pred             ccceEEEEEE-ECCeEEEE
Confidence            9999999999 68998877

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.60  E-value=2.4e-15  Score=126.60  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=97.9

Q ss_pred             hhhccCCCcEe-cCC-Ccceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--H
Q 018726          139 LLAIEGRDYVL-SRD-HRKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--K  212 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~-g~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~  212 (351)
                      .+|+++|||++ +.. +.+++++++ +||++||+|| +.|||.|..++..+++.+++|.+   .+++|++||.|...  .
T Consensus         3 ~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~---~~~~vigiS~Ds~~sh~   79 (219)
T d1xcca_           3 HLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSCNSKESHD   79 (219)
T ss_dssp             CTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHHH
T ss_pred             cCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc---cceEEEeecCccHhHHh
Confidence            37999999999 554 347999996 7899999998 78999999999999999999997   89999999999633  4


Q ss_pred             HHHhhhc---cCCceeeccCchhhHHHHHHcCcC------------ceeeEEEECCCCceEec
Q 018726          213 EFDLNHS---IMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       213 ~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~------------~~P~~~lid~~G~v~~~  260 (351)
                      +|.+..+   ...-+.+|...|.+..+++.||+.            ...++||||++|+|++.
T Consensus        80 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~  142 (219)
T d1xcca_          80 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT  142 (219)
T ss_dssp             HHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred             HHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEE
Confidence            4544433   223467888899999999999982            24689999999999876

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-14  Score=117.26  Aligned_cols=115  Identities=18%  Similarity=0.352  Sum_probs=87.7

Q ss_pred             CcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcc-cCCceEEEEEeCCCC---HHHHHhhhc
Q 018726          146 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRD---HKEFDLNHS  219 (351)
Q Consensus       146 df~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~---~~~~~~~~~  219 (351)
                      ||++ +.+|+++++++++||++||+||++||+. |....+.+.++++.+... ....+.++.++.+..   .........
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK   81 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence            6999 9999999999999999999999999985 999999999999988652 224566777777642   334444433


Q ss_pred             --cCCceeeccCchhhHHHHHHcCcCc---------------eeeEEEECCCCceEec
Q 018726          220 --IMPWLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTIST  260 (351)
Q Consensus       220 --~~~~~~~~~~~d~~~~~~~~~~i~~---------------~P~~~lid~~G~v~~~  260 (351)
                        ..+|..++........+.+.|++..               .++++|||++|+|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~  139 (160)
T d1wp0a1          82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  139 (160)
T ss_dssp             TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred             hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence              3446666666555667778887643               3578999999999977

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.6e-15  Score=112.24  Aligned_cols=71  Identities=30%  Similarity=0.577  Sum_probs=63.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++++|+|||+||++|+.+.|.+.+++.++.    .++.++.+++|..                       ..++++|+
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~   71 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG   71 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------TTHHHHTT
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhh----cceeeeeccccch-----------------------hhHHHHhC
Confidence            36899999999999999999999999998876    6788888888864                       57999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        72 v~~~PT~~~~-~~G~~v~~   89 (108)
T d2trxa_          72 IRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcEEEEEEE-ECCEEEEE
Confidence            9999999999 78998877

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.58  E-value=6.3e-15  Score=110.91  Aligned_cols=70  Identities=23%  Similarity=0.542  Sum_probs=63.3

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.||++||++|+.+.|.+.+++++++    +.+.++.|++|..                       ..++++|+|
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~I   72 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEIDPN-----------------------PTTVKKYKV   72 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEESTTC-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcC----Ccceeceeccccc-----------------------HHHHHHhcc
Confidence            5799999999999999999999999999887    5688999998865                       689999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+++.+
T Consensus        73 ~~~Pt~~~~-~~g~~v~~   89 (108)
T d1thxa_          73 EGVPALRLV-KGEQILDS   89 (108)
T ss_dssp             CSSSEEEEE-ETTEEEEE
T ss_pred             cCCCEEEEE-ECCEEEEE
Confidence            999999999 58988876

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.57  E-value=6.2e-15  Score=110.15  Aligned_cols=70  Identities=23%  Similarity=0.492  Sum_probs=63.2

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +++++|.|||+||++|+.+.|.+.++.+++.    ..+.++.|+.|..                       ..++++|+|
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~v~~d~~-----------------------~~l~~~~~V   69 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNTDEA-----------------------PGIATQYNI   69 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhc----CccceeEEecccc-----------------------hhhhhhcce
Confidence            5789999999999999999999999999987    5678888888865                       689999999


Q ss_pred             CceeeEEEECCCCceEec
Q 018726          243 KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~~  260 (351)
                      .++||++++ ++|+.+.+
T Consensus        70 ~~~Pt~~~~-~~G~~v~~   86 (104)
T d1fb6a_          70 RSIPTVLFF-KNGERKES   86 (104)
T ss_dssp             CSSSEEEEE-ETTEEEEE
T ss_pred             eeeeEEEEE-EcCeEEEE
Confidence            999999999 78998877

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.56  E-value=7.9e-15  Score=111.05  Aligned_cols=71  Identities=21%  Similarity=0.388  Sum_probs=64.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.+++++++++    +++.++.|++|..                       ..++++|+
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~   75 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDVDAV-----------------------AAVAEAAG   75 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTT-----------------------HHHHHHHT
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhccc----ceEEEEEeecccc-----------------------cccccccc
Confidence            47899999999999999999999999999986    5688999988864                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        76 v~~~Pt~~~~-~~G~~v~~   93 (112)
T d1ep7a_          76 ITAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             CCBSSEEEEE-ETTEEEEE
T ss_pred             ccCCCEEEEE-ECCEEEEE
Confidence            9999999999 78988877

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.56  E-value=1.3e-14  Score=110.16  Aligned_cols=70  Identities=21%  Similarity=0.502  Sum_probs=61.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .++++||+|||+||++|+.+.|.|.++.+.++     ++.++.|+.|..                       ..++++|+
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-----~~~~~~vd~~~~-----------------------~~l~~~~~   78 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDEL-----------------------KSVASDWA   78 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhccccc-----ccceeEEEeeec-----------------------eeeccccc
Confidence            47899999999999999999999999998874     467777777754                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        79 V~~~Pt~~~~-~~G~~v~~   96 (114)
T d1xfla_          79 IQAMPTFMFL-KEGKILDK   96 (114)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             eeeeEEEEEE-ECCEEEEE
Confidence            9999999999 89998877

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.9e-15  Score=110.00  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|.++|+|||+||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++|+
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-----~~~f~~vd~d~~-----------------------~~l~~~~~   71 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQC-----------------------QGTAATNN   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCCCccccchhhhccccccc-----cccccccccccc-----------------------hhhhhhcC
Confidence            46899999999999999999999999999875     467888887764                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        72 v~~~Pt~~~~-~~G~~v~~   89 (107)
T d1gh2a_          72 ISATPTFQFF-RNKVRIDQ   89 (107)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             ceeceEEEEE-ECCEEEEE
Confidence            9999999999 88998877

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9e-15  Score=109.43  Aligned_cols=70  Identities=20%  Similarity=0.444  Sum_probs=61.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+|||+||++|+.+.|.+.++.++++     ++.++.|++|..                       ..++++|+
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-----~~~~~~vd~d~~-----------------------~~~~~~~~   70 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDDC-----------------------QDVASECE   70 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhccccc-----cceeeecccccC-----------------------HhHHHHcC
Confidence            46899999999999999999999999998875     355777777764                       68899999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        71 V~~~Pt~~~~-~~G~~v~~   88 (105)
T d2ifqa1          71 VKCMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             CCBSSEEEEE-ETTEEEEE
T ss_pred             ceEEEEEEEE-ECCEEEEE
Confidence            9999999999 89998877

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.1e-14  Score=116.82  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             CCcEe-cCC-CcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018726          145 RDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD  215 (351)
Q Consensus       145 pdf~~-~~~-g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~  215 (351)
                      -||++ +++ |++++|++++||++||.+||+||++|.+..+.|++++++|++   .+++|++++++.       +.+++.
T Consensus         4 ydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~---~g~~Il~fP~nqF~~qE~~~~~ei~   80 (184)
T d2f8aa1           4 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAKNEEIL   80 (184)
T ss_dssp             GGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSCHHHHH
T ss_pred             eeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcc---cceeEEEeeccccccccccchhhhh
Confidence            47888 876 678999999999999999999999999999999999999987   889999999864       345666


Q ss_pred             hhhc
Q 018726          216 LNHS  219 (351)
Q Consensus       216 ~~~~  219 (351)
                      ++++
T Consensus        81 ~f~~   84 (184)
T d2f8aa1          81 NSLK   84 (184)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            6654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.55  E-value=1.6e-14  Score=108.44  Aligned_cols=78  Identities=14%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             cccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHH
Q 018726          159 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  238 (351)
Q Consensus       159 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  238 (351)
                      .+..++++++.||++||++|+.+.|.+++++.+........+.++.|+.+..                       ..+++
T Consensus        11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~-----------------------~~l~~   67 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWAD   67 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHH
T ss_pred             HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc-----------------------ccccc
Confidence            3444567788899999999999999999998775432335677777776653                       68999


Q ss_pred             HcCcCceeeEEEECCCCceEec
Q 018726          239 IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       239 ~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +|+|.++||++++ ++|+++.+
T Consensus        68 ~~~V~~vPTi~i~-~~G~~~~~   88 (107)
T d1a8la2          68 QYNVMAVPKIVIQ-VNGEDRVE   88 (107)
T ss_dssp             HTTCCSSCEEEEE-ETTEEEEE
T ss_pred             ccccccceEEEEE-eCCeEEEE
Confidence            9999999997665 88988876

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.55  E-value=1e-14  Score=110.45  Aligned_cols=70  Identities=17%  Similarity=0.472  Sum_probs=62.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|+|||+||++|+.+.|.|.+++++++     ++.++.|++|..                       ..+++.|+
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~~   76 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADNN-----------------------SEIVSKCR   76 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc-----cccccccccccc-----------------------hhhHHHcc
Confidence            46799999999999999999999999998874     578888888864                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        77 V~~~Pt~~~~-~~G~~v~~   94 (113)
T d1r26a_          77 VLQLPTFIIA-RSGKMLGH   94 (113)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             ccCCCEEEEE-ECCEEEEE
Confidence            9999999999 88998877

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.53  E-value=1.8e-14  Score=108.97  Aligned_cols=71  Identities=14%  Similarity=0.434  Sum_probs=62.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                      ...++++|+
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-----~v~~~~vd~~~~----------------------~~~l~~~~~   76 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKELG   76 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHHC
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhccccc-----cceeeccccccc----------------------chhhHhhee
Confidence            35799999999999999999999999999885     367777877653                      368999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        77 V~~~Pt~~~~-k~G~~v~~   94 (112)
T d1f9ma_          77 IRVVPTFKIL-KENSVVGE   94 (112)
T ss_dssp             CSSSSEEEEE-ETTEEEEE
T ss_pred             eccCCEEEEE-ECCEEEEE
Confidence            9999999999 89999877

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.2e-14  Score=110.92  Aligned_cols=84  Identities=18%  Similarity=0.332  Sum_probs=61.9

Q ss_pred             eeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHH
Q 018726          156 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  235 (351)
Q Consensus       156 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  235 (351)
                      ..+++.+||+++|+|||+||++|+.+.|.+.+..+....  ..++.++.+.++.+.                   +....
T Consensus        15 ~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~-------------------~~~~~   73 (117)
T d2fwha1          15 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKA--LADTVLLQANVTAND-------------------AQDVA   73 (117)
T ss_dssp             HHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHH--TTTSEEEEEECTTCC-------------------HHHHH
T ss_pred             HHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHh--ccceEEEecccccch-------------------hHHHH
Confidence            345566799999999999999999999987443332221  134556666655431                   22568


Q ss_pred             HHHHcCcCceeeEEEECCCCceEec
Q 018726          236 LCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       236 ~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      ++++|+|.++||++++|++|+++..
T Consensus        74 l~~~~~v~~~Pt~~~~~~~G~~~~~   98 (117)
T d2fwha1          74 LLKHLNVLGLPTILFFDGQGQEHPQ   98 (117)
T ss_dssp             HHHHTTCCSSSEEEEECTTSCBCGG
T ss_pred             HHhhhehhhceEEEEEeCCCcEEec
Confidence            8999999999999999999998754

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.53  E-value=1.6e-14  Score=109.46  Aligned_cols=70  Identities=24%  Similarity=0.594  Sum_probs=62.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|++||+||++||++|+.+.|.|.++.+++.     ++.++.|++|..                       ..++++|+
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~d~~-----------------------~~l~~~~~   76 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDEL-----------------------KAVAEEWN   76 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTC-----------------------HHHHHHHH
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCC-----CceEEeeeeecc-----------------------ccccccCe
Confidence            46899999999999999999999999998874     467888887764                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        77 I~~~Pt~~~~-k~G~~v~~   94 (113)
T d1ti3a_          77 VEAMPTFIFL-KDGKLVDK   94 (113)
T ss_dssp             CSSTTEEEEE-ETTEEEEE
T ss_pred             ecccceEEEE-ECCEEEEE
Confidence            9999999999 79998877

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.5e-13  Score=109.60  Aligned_cols=116  Identities=18%  Similarity=0.262  Sum_probs=80.6

Q ss_pred             CCcEe-cCCCcceeecccCCcEEEEEEecCCChh-hHHhHHHHHHHHHHhhcccCCceEEEEEeCCCC---HHHHHhhhc
Q 018726          145 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEFDLNHS  219 (351)
Q Consensus       145 pdf~~-~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~~  219 (351)
                      +||++ +.+|+++++++++||++||+||.+||+. |......+..+...+.......+.+..++.+..   .+....+..
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS   86 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence            68999 9999999999999999999999999986 777777777777666543345667777776543   233333332


Q ss_pred             --cCCceeeccCchhhHHHHHH----------------cCcCceeeEEEECCCCceEec
Q 018726          220 --IMPWLAIPYEDRARQDLCRI----------------FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       220 --~~~~~~~~~~~d~~~~~~~~----------------~~i~~~P~~~lid~~G~v~~~  260 (351)
                        ...|..+.........+...                |.+...|++||||++|+|+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~  145 (169)
T d2b7ka1          87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  145 (169)
T ss_dssp             TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence              22234343333333333333                345678999999999999987

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.50  E-value=6.4e-14  Score=104.31  Aligned_cols=70  Identities=20%  Similarity=0.412  Sum_probs=61.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++++++|.||++||++|+.+.|.+.++.++++     ++.++.+++|..                       ..++++|+
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-----~~~~~~vd~d~~-----------------------~~~~~~~~   68 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----KMVFIKVDVDEV-----------------------SEVTEKEN   68 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTT-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhccc-----ceEEEeeccccC-----------------------cceeeeee
Confidence            36899999999999999999999999999885     356778888764                       68999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        69 V~~~Pt~i~~-k~G~~v~~   86 (103)
T d1syra_          69 ITSMPTFKVY-KNGSSVDT   86 (103)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             eecceEEEEE-ECCEEEEE
Confidence            9999999999 78998877

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7e-14  Score=109.14  Aligned_cols=71  Identities=17%  Similarity=0.374  Sum_probs=63.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+|+|||.|||+||++|+.+.|.|.+++++++    +.+.++.|++|..                       .+++++|+
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~VDvd~~-----------------------~~la~~~~   73 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITEV-----------------------PDFNKMYE   73 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTSSC
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhh----ccceEEEeecccc-----------------------chhhhhcC
Confidence            46899999999999999999999999999997    5688988988864                       58999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+..
T Consensus        74 I~~~PT~~~f-~~g~~i~~   91 (137)
T d1qgva_          74 LYDPCTVMFF-FRNKHIMI   91 (137)
T ss_dssp             SCSSCEEEEE-ETTEEEEE
T ss_pred             eeeEEEEEEE-eCCcEEEE
Confidence            9999999999 78887654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=7.1e-14  Score=109.22  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=61.7

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCc
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW  101 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (351)
                      .+| +.+.+|+ +++++++||+++|+|||+||++|++.+|.+.++++++++.    .+++|+.+.+.....+++....+
T Consensus         6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~----~~v~v~~~d~~~~~~~~~~~~~~   80 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEV----TFVGVAGLDQVPAMQEFVNKYPV   80 (134)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTS----EEEEEECSSCHHHHHHHHHHTTC
T ss_pred             cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhccc----ccccccccccchhHHHHHHhcCC
Confidence            445 8999999 9999999999999999999999999999999999987654    67888877766666666665554

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.46  E-value=9.4e-14  Score=109.90  Aligned_cols=78  Identities=45%  Similarity=0.949  Sum_probs=69.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +.+.+|. +++++++||+|+|+|||+||++|+.++|.+.++++++.... .+.+++|+.|.+.+.+..++....+..+++
T Consensus        11 ~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~~~~~~~~~~~~~~~~~~   89 (144)
T d1o8xa_          11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFAKMPWLAVPF   89 (144)
T ss_dssp             EEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHTTCSSEECCG
T ss_pred             eEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccHHHHHHHHhhccccceee
Confidence            6778888 99999999999999999999999999999999999997652 389999999988888888888777777776

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=2.2e-14  Score=109.51  Aligned_cols=72  Identities=18%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ..++++|.||++|||+|+.+.|.|.++.++|++   .++.++.|++|.                       ..+++++|+
T Consensus        29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~---~~~~~~~Vd~d~-----------------------~~~l~~~~~   82 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQ---FDWQVAVADLEQ-----------------------SEAIGDRFN   82 (119)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTCTT---SCCEEEEECHHH-----------------------HHHHHHTTT
T ss_pred             CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCC---CceEEEEEECCC-----------------------CHHHHHhcC
Confidence            457999999999999999999999999999974   567777776654                       478999999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+.+.+
T Consensus        83 V~~~Pt~~~~-~~G~~v~~  100 (119)
T d2es7a1          83 VRRFPATLVF-TDGKLRGA  100 (119)
T ss_dssp             CCSSSEEEEE-SCC----C
T ss_pred             cCcceEEEEE-EcCeEEEE
Confidence            9999999999 79999888

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=2.6e-14  Score=102.57  Aligned_cols=67  Identities=24%  Similarity=0.360  Sum_probs=55.6

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      +|+.|++|||+||++|+.+.|.+.+++++++    ..+.++.+..|..                       .+++++|+|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~~~~d~~-----------------------~~la~~~~V   54 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINVMEN-----------------------PQKAMEYGI   54 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEESSSS-----------------------CCTTTSTTT
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccc----ccccccccccccc-----------------------ccccccCCc
Confidence            5789999999999999999999999998876    5677777777753                       578899999


Q ss_pred             CceeeEEEECCCCce
Q 018726          243 KGIPALVLIGPDGKT  257 (351)
Q Consensus       243 ~~~P~~~lid~~G~v  257 (351)
                      .++||++ ++++|++
T Consensus        55 ~~~Pt~~-i~~~g~~   68 (85)
T d1fo5a_          55 MAVPTIV-INGDVEF   68 (85)
T ss_dssp             CCSSEEE-ETTEEEC
T ss_pred             eEeeEEE-EECCcEE
Confidence            9999975 4566653

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-14  Score=109.04  Aligned_cols=81  Identities=21%  Similarity=0.406  Sum_probs=63.6

Q ss_pred             ecccCCcEEEEEEecC-------CChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCc
Q 018726          158 VSELAGKTIGLYFGAH-------WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED  230 (351)
Q Consensus       158 l~~~~gk~vll~F~a~-------~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~  230 (351)
                      +++.+||+++|+|||+       ||+||+.+.|.+.++++.++    +++.++.|+++... +               ..
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~----~~~~~~~vdv~~~~-~---------------~~   75 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQVGEKP-Y---------------WK   75 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEECCCHH-H---------------HH
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC----CceEEEEEECCCCc-c---------------cc
Confidence            3455789999999995       99999999999999988876    57899999987421 1               11


Q ss_pred             hhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          231 RARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       231 d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      |.+..++++|+|.++||+++++..++++
T Consensus        76 d~~~~l~~~~~V~~iPT~i~~~~g~~l~  103 (119)
T d1woua_          76 DPNNDFRKNLKVTAVPTLLKYGTPQKLV  103 (119)
T ss_dssp             CTTCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred             hhhhhHHHhCCeEEEEEEEEEECCeEEe
Confidence            2246788999999999999995444444

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.5e-14  Score=112.30  Aligned_cols=92  Identities=14%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++|+|.|||+|||+|+.+.|.|.++.++|++   ..+.+..|++|.                       +.+++++|+
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~---~~~~~a~Vd~d~-----------------------~~~la~~~~   88 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQ-----------------------SEAIGDRFG   88 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTT---SCEEEEEECHHH-----------------------HHHHHHHHT
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccC---CcceeEEEEecC-----------------------CHHHHHhhc
Confidence            357899999999999999999999999999974   556666776664                       479999999


Q ss_pred             cCceeeEEEECCCCceEeccccceeeccCCcCCCCchhhHHHHHHHHHHhcCc
Q 018726          242 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA  294 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~  294 (351)
                      |.++||++++ ++|+.+.+       +.|...       .++|.+.++..+..
T Consensus        89 V~~~PT~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~ll~~  126 (132)
T d2hfda1          89 VFRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLVEP  126 (132)
T ss_dssp             CCSCCEEEEE-ETTEEEEE-------ECCCSC-------HHHHHHHHHHHHSC
T ss_pred             cCcceeEEEE-EcCcEeee-------ecCCCC-------HHHHHHHHHHHhCc
Confidence            9999999999 88988877       556543       44555555555443

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.42  E-value=6.1e-14  Score=104.80  Aligned_cols=84  Identities=23%  Similarity=0.390  Sum_probs=65.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++|+++|+|||+||++|+.+.|.+.++++++++.   +.++.|++|... ..++.+++..+|++.+  +|+...++.|..
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~~-~~~~~~~V~~~Pt~~~~~~G~~~~~~~G~~   91 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-ETTSQFGIMSIPTLILFKGGEPVKQLIGYQ   91 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEEEEESCC
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCCc-ccHHHCCcceeeEEEEEECCEEEEEEECCC
Confidence            5789999999999999999999999999999875   566666666544 4666778788888887  787777777765


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+.+...++
T Consensus        92 ~~~~l~~~i~  101 (105)
T d1nw2a_          92 PKEQLEAQLA  101 (105)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHHH
Confidence            5566655544

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=5.3e-14  Score=106.24  Aligned_cols=77  Identities=25%  Similarity=0.475  Sum_probs=60.2

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHH
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKL  114 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  114 (351)
                      +++..||+|+|+|||+||++|+.+.|.++++++++++.   +.++.|++|... .+.+.+++..+|++.+  +|+...++
T Consensus        20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~   95 (111)
T d1xwaa_          20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE-DIAMEYNISSMPTFVFLKNGVKVEEF   95 (111)
T ss_dssp             HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecCc-chhhcCCCccccEEEEEECCEEEEEE
Confidence            44557999999999999999999999999999998865   556666665544 4666777777778776  77766666


Q ss_pred             hhh
Q 018726          115 RIR  117 (351)
Q Consensus       115 ~~~  117 (351)
                      .|.
T Consensus        96 ~G~   98 (111)
T d1xwaa_          96 AGA   98 (111)
T ss_dssp             ESC
T ss_pred             eCC
Confidence            653

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.41  E-value=7.9e-14  Score=104.55  Aligned_cols=84  Identities=11%  Similarity=0.271  Sum_probs=65.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+|+|+|||+||++|+++.|.+.++++++.+.   +.++.|++|... .+.+.+++..+|++.+  +|+...++.|..
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~   93 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-NVASEYGIRSIPTIMVFKGGKKCETIIGAV   93 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHHTCCSSCEEEEESSSSEEEEEESCC
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccch-hHHHHhcccceEEEEEEECCeEEEEEeCCC
Confidence            5799999999999999999999999999988766   567777777554 4667788888888887  777776777655


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+++...++
T Consensus        94 ~~~~l~~~i~  103 (107)
T d1dbya_          94 PKATIVQTVE  103 (107)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555554443

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=5.8e-13  Score=101.70  Aligned_cols=82  Identities=18%  Similarity=0.360  Sum_probs=66.9

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      .++..++.-.--.++.++|.||++||++|+.+.|.+.++.+.+..   .++.|+.|+++..                   
T Consensus        14 ~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~---~~v~~~~vd~~~~-------------------   71 (119)
T d2b5ea4          14 KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDCTEN-------------------   71 (119)
T ss_dssp             ECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEETTTC-------------------
T ss_pred             EcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcc---cceeeeeeeccch-------------------
Confidence            444544432222468999999999999999999999999999875   6788999988864                   


Q ss_pred             chhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          230 DRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       230 ~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                          ..++++|+|.++||++++ ++|+..
T Consensus        72 ----~~l~~~~~v~~~Pti~~f-~~g~~~   95 (119)
T d2b5ea4          72 ----QDLCMEHNIPGFPSLKIF-KNSDVN   95 (119)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTCTT
T ss_pred             ----HHHHHHhccccCCeEEEE-ECCEEe
Confidence                689999999999999999 777554

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=8.6e-14  Score=104.51  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=64.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+|+|+|||+||++|+.+.|.+.++++++..+   +.++.+++|.+. .+.+.+++..+|++.+  +|+...++.|..
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~~-~l~~~~~v~~~PT~~~~~~G~~v~~~~G~~   94 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAATKVGAL   94 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-THHHHTTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccchh-hHHHHhCCCcEEEEEEEECCEEEEEEeCCC
Confidence            5799999999999999999999999999987665   666666666544 4667778888888776  787777777655


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+.+.++++
T Consensus        95 ~~~~l~~~i~  104 (108)
T d2trxa_          95 SKGQLKEFLD  104 (108)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5556655544

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=5e-13  Score=104.33  Aligned_cols=72  Identities=21%  Similarity=0.349  Sum_probs=61.5

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      .+| +.+.+|+ +++++++||+++|.|||+||++|+..+|.+.++++++++    +.+++|+.+.+...+.++.+.++
T Consensus         5 ~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~v~v~~~~~~~~~~~~~~~~~   78 (134)
T d1lu4a_           5 LQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA----VTFVGIATRADVGAMQSFVSKYN   78 (134)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHHT
T ss_pred             CcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhcc----ccccccccccchhhhhhhhhhhc
Confidence            344 8899999 999999999999999999999999999999999987543    68999999887777777755444

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.39  E-value=1.4e-13  Score=108.80  Aligned_cols=78  Identities=14%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-----hhhHHHHHhcCC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-----ENGFEEHFKCMP  100 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-----~~~~~~~~~~~~  100 (351)
                      .|.+.+|+ ++++.++||+++|.|||+||++|++.+|.+.+++++++..+  +.++.|+.+..     .....+++....
T Consensus         7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~   84 (143)
T d2fy6a1           7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLN   84 (143)
T ss_dssp             TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcC
Confidence            48889999 99999999999999999999999999999999999998776  78888887532     123455555554


Q ss_pred             ceeeec
Q 018726          101 WLAVPF  106 (351)
Q Consensus       101 ~~~~~~  106 (351)
                      ++.+++
T Consensus        85 ~~~~~~   90 (143)
T d2fy6a1          85 YPKLPV   90 (143)
T ss_dssp             CTTSCE
T ss_pred             Cccccc
Confidence            444433

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=4.3e-13  Score=110.71  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             cccCcce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           21 ASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        21 ~~~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      ....++| |.+.+|+ +++++++||+|+|.|||+||++|+..+|.+.+++++|+++   +.+++|+.+
T Consensus         9 G~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~sn   73 (187)
T d2cvba1           9 ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINAN   73 (187)
T ss_dssp             TCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECC
T ss_pred             CCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeecc
Confidence            3345666 9999999 9999999999999999999999999999999999999765   778888753

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=2.8e-13  Score=96.94  Aligned_cols=61  Identities=16%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             EEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCce
Q 018726          166 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  245 (351)
Q Consensus       166 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  245 (351)
                      .+..||++||++|+.+.|.+++++++++    +++.++.|++|..                       .+++++|+|.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~V~~~   56 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDIMVD-----------------------REKAIEYGLMAV   56 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECTTTC-----------------------GGGGGGTCSSCS
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccc----ccccccccccccc-----------------------hhhHHhcCceEe
Confidence            4567999999999999999999999997    5688888888864                       688999999999


Q ss_pred             eeEEEECCC
Q 018726          246 PALVLIGPD  254 (351)
Q Consensus       246 P~~~lid~~  254 (351)
                      ||+++ +.+
T Consensus        57 Pt~~~-~~~   64 (85)
T d1nhoa_          57 PAIAI-NGV   64 (85)
T ss_dssp             SEEEE-TTT
T ss_pred             CEEEE-CCc
Confidence            99765 443

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.37  E-value=1.7e-13  Score=102.09  Aligned_cols=83  Identities=18%  Similarity=0.326  Sum_probs=63.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+|+|+|||+||++|+++.|.+.++++++.+.   +.++.|++|.+. .+++.+++..+|++.+  +|+...++.|..
T Consensus        16 ~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~   91 (104)
T d1fb6a_          16 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP-GIATQYNIRSIPTVLFFKNGERKESIIGAV   91 (104)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEEECC
T ss_pred             CCCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccch-hhhhhcceeeeeEEEEEEcCeEEEEEeCCC
Confidence            4789999999999999999999999999998776   456666666444 4677778888888887  777777777655


Q ss_pred             hhhHHhhhc
Q 018726          119 RREELKAID  127 (351)
Q Consensus       119 ~~~~l~~~~  127 (351)
                      ..+.+...+
T Consensus        92 ~~~~l~~~i  100 (104)
T d1fb6a_          92 PKSTLTDSI  100 (104)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            555555443

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.36  E-value=1.9e-13  Score=102.58  Aligned_cols=84  Identities=20%  Similarity=0.402  Sum_probs=64.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      .+|+++|.|||+||++|+++.|.+.++++++++.   +.++.|++|.+. .+++.+++..+|++.+  +|+...++.|..
T Consensus        19 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~~-~l~~~~~I~~~Pt~~~~~~g~~v~~~~G~~   94 (108)
T d1thxa_          19 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-TTVKKYKVEGVPALRLVKGEQILDSTEGVI   94 (108)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             CCCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccccH-HHHHHhcccCCCEEEEEECCEEEEEEeCCC
Confidence            4689999999999999999999999999998765   567777666544 4667777778888887  777666776655


Q ss_pred             hhhHHhhhcc
Q 018726          119 RREELKAIDD  128 (351)
Q Consensus       119 ~~~~l~~~~~  128 (351)
                      ..+++.++++
T Consensus        95 ~~~~l~~~i~  104 (108)
T d1thxa_          95 SKDKLLSFLD  104 (108)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555555443

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.36  E-value=1.7e-12  Score=95.01  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=58.8

Q ss_pred             ccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHH
Q 018726          160 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  239 (351)
Q Consensus       160 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  239 (351)
                      .+.|.+.++.|+++|||+|+.+.|.+++++..+     +++.+..|+.+..                       .+++++
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-----~~i~~~~vd~~~~-----------------------~~l~~~   63 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-----PRIKHTAIDGGTF-----------------------QNEITE   63 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-----TTEEEEEEETTTC-----------------------HHHHHH
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-----CceEEEEEecccc-----------------------hHHHhh
Confidence            445778899999999999999999999998765     5688888888864                       689999


Q ss_pred             cCcCceeeEEEECCCCceEec
Q 018726          240 FNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       240 ~~i~~~P~~~lid~~G~v~~~  260 (351)
                      |+|.++||+++   +|+.++.
T Consensus        64 ~~I~~vPt~~~---ng~~~~~   81 (96)
T d1hyua4          64 RNVMGVPAVFV---NGKEFGQ   81 (96)
T ss_dssp             TTCCSSSEEEE---TTEEEEE
T ss_pred             cccccccEEEE---CCEEEEe
Confidence            99999999765   7777654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-13  Score=103.68  Aligned_cols=72  Identities=22%  Similarity=0.507  Sum_probs=60.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++|.+||.||++||++|+.+.|.+.++.+.+.. .+..+.++.|+++..                       ..++.+|+
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~vd~~~~-----------------------~~l~~~~~   78 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA-EGSEIRLAKVDATEE-----------------------SDLAQQYG   78 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEEETTTC-----------------------CSSHHHHT
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccc-cccceeeeccccccc-----------------------hhHHHHhC
Confidence            468999999999999999999999999999864 335677777777753                       57889999


Q ss_pred             cCceeeEEEECCCCceE
Q 018726          242 IKGIPALVLIGPDGKTI  258 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~  258 (351)
                      |.++||++++ ++|+.+
T Consensus        79 i~~~Pt~~~~-~~G~~~   94 (120)
T d1meka_          79 VRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             CCSSSEEEEE-ESSCSS
T ss_pred             CccCCeEEEE-ECCeEe
Confidence            9999999999 666543

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.34  E-value=1.8e-12  Score=101.49  Aligned_cols=74  Identities=27%  Similarity=0.594  Sum_probs=66.4

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCC
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP  100 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (351)
                      +++ +.+.+|+ +++++++||+++|.||++||++|..++|.+.++++++.+.+  +.++.|+++.+...+.++.+..+
T Consensus         6 P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~~~   81 (137)
T d1st9a_           6 PNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYG   81 (137)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHHTT
T ss_pred             CCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHHcC
Confidence            454 8899999 99999999999999999999999999999999999998877  99999999988877888776544

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=2.2e-12  Score=97.82  Aligned_cols=75  Identities=24%  Similarity=0.445  Sum_probs=59.3

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .++.++|+||++||++|+.+.|.|.++.++++    ..  +.+|+++....                 .+....++++|+
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~----~~--v~~v~~~~~~~-----------------~~~~~~~~~~~~   81 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK----AH--IYFINSEEPSQ-----------------LNDLQAFRSRYG   81 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC----CC--CEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhh----hh--hhhheeecccc-----------------cccccccccccc
Confidence            46799999999999999999999999998886    33  45566664210                 111357889999


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      |.++||++++ ++|+++.+
T Consensus        82 V~~~PTli~~-~~gk~~~~   99 (115)
T d1zmaa1          82 IPTVPGFVHI-TDGQINVR   99 (115)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             cccccEEEEE-ECCEEEEE
Confidence            9999999999 68998876

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.32  E-value=4.9e-13  Score=100.91  Aligned_cols=84  Identities=21%  Similarity=0.326  Sum_probs=61.5

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .++|+|+|+|||+||++|+.+.|.+.+++++++++   +.++.|++|... .+.+.+++..+|++.+  +|+...++.|.
T Consensus        22 ~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~   97 (112)
T d1ep7a_          22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVA-AVAEAAGITAMPTFHVYKDGVKADDLVGA   97 (112)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTTH-HHHHHHTCCBSSEEEEEETTEEEEEEESC
T ss_pred             hcCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeeccccc-cccccccccCCCEEEEEECCEEEEEEeCc
Confidence            36899999999999999999999999999998764   555555555443 4666677777777776  77776666663


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                       ..+++.++++
T Consensus        98 -~~~~l~~~i~  107 (112)
T d1ep7a_          98 -SQDKLKALVA  107 (112)
T ss_dssp             -CHHHHHHHHH
T ss_pred             -CHHHHHHHHH
Confidence             3344544443

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.30  E-value=7.6e-13  Score=100.05  Aligned_cols=82  Identities=22%  Similarity=0.407  Sum_probs=59.5

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..+|+|+|+|||+||++|+.+.|.+.++++++.+    +.++.+++|... .+.+.+++..+|++.+  +|+...++.|.
T Consensus        24 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~~-~l~~~~~I~~~Pt~~~~k~G~~v~~~~G~   98 (113)
T d1ti3a_          24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVDELK-AVAEEWNVEAMPTFIFLKDGKLVDKTVGA   98 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTCH-HHHHHHHCSSTTEEEEEETTEEEEEEECC
T ss_pred             cCCCEEEEEEEcCccccchhhhhhhhhhhccCCC----ceEEeeeeeccc-cccccCeecccceEEEEECCEEEEEEcCC
Confidence            4689999999999999999999999999988743    445555554443 4667777778888887  78766666652


Q ss_pred             hhhhHHhhhc
Q 018726          118 KRREELKAID  127 (351)
Q Consensus       118 ~~~~~l~~~~  127 (351)
                       ..+++.+.+
T Consensus        99 -~~~~l~~~i  107 (113)
T d1ti3a_          99 -DKDGLPTLV  107 (113)
T ss_dssp             -CTTHHHHHH
T ss_pred             -CHHHHHHHH
Confidence             334444443

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.30  E-value=4e-12  Score=103.88  Aligned_cols=76  Identities=28%  Similarity=0.440  Sum_probs=65.0

Q ss_pred             cce-eeCCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-hhhHHHHHhcCCc
Q 018726           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPW  101 (351)
Q Consensus        25 ~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~  101 (351)
                      +++ |.+.+|+ +++++++||+++|+||++||++|+...+.+.++++++.+.+  +.+++|++|.+ .+...++.+..++
T Consensus        37 Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~  114 (176)
T d1jfua_          37 PDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANL  114 (176)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHHHTTC
T ss_pred             CCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhHhhhCC
Confidence            344 9999999 99999999999999999999999999999999999998776  88999999853 4456666665554


Q ss_pred             e
Q 018726          102 L  102 (351)
Q Consensus       102 ~  102 (351)
                      .
T Consensus       115 ~  115 (176)
T d1jfua_         115 T  115 (176)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.28  E-value=1.1e-12  Score=99.27  Aligned_cols=72  Identities=17%  Similarity=0.353  Sum_probs=54.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ..+|+++|+|||+||++|+.+.|.+.++++.+.+    +.++.|++|... .+.+.+++..+|++.+  +|+...++.|
T Consensus        26 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G   99 (114)
T d1xfla_          26 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDELK-SVASDWAIQAMPTFMFLKEGKILDKVVG   99 (114)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             ccCCeEEEEEEcCCCCCccccccchhhhcccccc----cceeEEEeeece-eeccccceeeeEEEEEEECCEEEEEEeC
Confidence            3689999999999999999999999999988753    344444444333 4666778778888876  7776666665

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.28  E-value=1.2e-12  Score=98.67  Aligned_cols=73  Identities=14%  Similarity=0.362  Sum_probs=57.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+|+|+|+||++||++|+.+.|.+.++++++.+    +.++.+++|.+...+.+.+++..+|++.+  +|+...++.|.
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~~k~G~~v~~~~G~   98 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGA   98 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEEEEEESS
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeecccccccchhhHhheeeccCCEEEEEECCEEEEEEeCC
Confidence            468999999999999999999999999998764    34555555544456778888788888887  78777777764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.7e-13  Score=98.36  Aligned_cols=71  Identities=20%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      .+|+|+|+|||+||++|+.+.|.+.++++++.+    +.++.+++|... ...+.+++..+|++.+  +|+...++.|
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~~-~~~~~~~V~~~Pt~~~~~~G~~v~~~~G   91 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ-DVASECEVKCMPTFQFFKKGQKVGEFSG   91 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEEEEES
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccCH-hHHHHcCceEEEEEEEEECCEEEEEEeC
Confidence            578999999999999999999999999998754    234444444333 4666777777788877  8877777666

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.5e-12  Score=100.53  Aligned_cols=63  Identities=24%  Similarity=0.393  Sum_probs=51.7

Q ss_pred             eCCCCc-ccccCC-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           29 LSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        29 ~~~~g~-~~~~~~-~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      ++.+|+ ++.+.+ +||+|+|+|||+||++|+..+|.+.++++    .+  +.++.++.+.+......++.
T Consensus         5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~   69 (136)
T d1z5ye1           5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLK   69 (136)
T ss_dssp             SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHH
T ss_pred             ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHH
Confidence            466688 888887 89999999999999999999999998765    23  67999999887766555544

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.5e-12  Score=99.50  Aligned_cols=78  Identities=17%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             ecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          158 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       158 l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      .+...||+++|+|||+||++|+.+.|.+.+..+..+.  ..++.++.|+.+..                       ....
T Consensus        20 ~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~-----------------------~~~~   74 (135)
T d1sena_          20 EAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEE-----------------------PKDE   74 (135)
T ss_dssp             HHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGS-----------------------CSCG
T ss_pred             HHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHh--cCCcEEEeCCCCcC-----------------------HHHH
Confidence            3444699999999999999999999998776544331  24444444443322                       1222


Q ss_pred             H-HcCcCceeeEEEECCCCceEec
Q 018726          238 R-IFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       238 ~-~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      . .+...++|+++++|++|+++..
T Consensus        75 ~~~~~~~~~Pt~~~~d~~G~~~~~   98 (135)
T d1sena_          75 DFSPDGGYIPRILFLDPSGKVHPE   98 (135)
T ss_dssp             GGCTTCSCSSEEEEECTTSCBCTT
T ss_pred             HHHhhcccceeEEEECCCCeEEEE
Confidence            2 2234568999999999998876

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=2.4e-12  Score=97.08  Aligned_cols=71  Identities=14%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ++++++|+|||+||++|+++.|.+.++++++.+    +.++.|++|... .+.+.+++..+|++.+  +|+...++.|
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G   97 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNNS-EIVSKCRVLQLPTFIIARSGKMLGHVIG   97 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCCeEEEEEECCCCccchhhceecccccccccc----ccccccccccch-hhHHHccccCCCEEEEEECCEEEEEEeC
Confidence            678999999999999999999999999998752    456666665443 4777788888888887  7777666665

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2e-12  Score=96.60  Aligned_cols=80  Identities=11%  Similarity=0.212  Sum_probs=58.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      ..+|+++|+|||+||++|+++.|.+.++++++.+    +.++.+++|... .+.+.+++..+|++.+  +|+...++.|.
T Consensus        19 ~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~   93 (107)
T d1gh2a_          19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQCQ-GTAATNNISATPTFQFFRNKVRIDQYQGA   93 (107)
T ss_dssp             TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESS
T ss_pred             CCCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccch-hhhhhcCceeceEEEEEECCEEEEEEeCC
Confidence            4588999999999999999999999999998753    345555554433 4667777777778776  78777666663


Q ss_pred             hhhhHHhh
Q 018726          118 KRREELKA  125 (351)
Q Consensus       118 ~~~~~l~~  125 (351)
                       ....+.+
T Consensus        94 -~~~~l~~  100 (107)
T d1gh2a_          94 -DAVGLEE  100 (107)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             3344433

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.24  E-value=2.7e-12  Score=95.91  Aligned_cols=89  Identities=8%  Similarity=0.018  Sum_probs=62.1

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHH
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKL  114 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l  114 (351)
                      ...+++++++.|||+||++|+++.|.+.+++......+. ..|.++.+|.++. .+++.+++..+|++.+  +|+...++
T Consensus        11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~-~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~~~~   89 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGK-GKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEF   89 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTC-CCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEEE
T ss_pred             HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccC-CcEEEEEeccccccccccccccccceEEEEEeCCeEEEEE
Confidence            345666777889999999999999999999877543211 2355555655443 5777888888888776  67766677


Q ss_pred             hhhhhhhHHhhhc
Q 018726          115 RIRKRREELKAID  127 (351)
Q Consensus       115 ~~~~~~~~l~~~~  127 (351)
                      .|....+.+.+.+
T Consensus        90 ~G~~~~~~~~~~i  102 (107)
T d1a8la2          90 EGAYPEKMFLEKL  102 (107)
T ss_dssp             ESCCCHHHHHHHH
T ss_pred             ECCCCHHHHHHHH
Confidence            7755555554443

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=2.8e-12  Score=100.77  Aligned_cols=83  Identities=20%  Similarity=0.354  Sum_probs=60.8

Q ss_pred             cCCCcceeecc-cCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeecc
Q 018726          150 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  228 (351)
Q Consensus       150 ~~~g~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  228 (351)
                      .++++++.-.- -.++.|+|.||++||++|+.+.|.+.++++.|+.   ....|..+.+|.+                  
T Consensus        16 ~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---~~~~v~~~~~d~~------------------   74 (140)
T d2b5ea1          16 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN---ATSDVLIAKLDHT------------------   74 (140)
T ss_dssp             EECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHH---HCSSCEEEEEEGG------------------
T ss_pred             EecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhc---cccceEEEeeecc------------------
Confidence            55555554221 1368999999999999999999999999999875   2333444455543                  


Q ss_pred             CchhhHHHHHHcCcCceeeEEEECCCCceEe
Q 018726          229 EDRARQDLCRIFNIKGIPALVLIGPDGKTIS  259 (351)
Q Consensus       229 ~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~  259 (351)
                           ..+++.|+|.++||++++ ++|+.+.
T Consensus        75 -----~~~~~~~~v~~~Ptl~~f-~~g~~~~   99 (140)
T d2b5ea1          75 -----ENDVRGVVIEGYPTIVLY-PGGKKSE   99 (140)
T ss_dssp             -----GCCCSSCCCSSSSEEEEE-CCTTSCC
T ss_pred             -----chhccccccccCCeEEEE-ECCEEcc
Confidence                 345778999999999999 5676543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.1e-12  Score=99.60  Aligned_cols=66  Identities=11%  Similarity=0.286  Sum_probs=52.9

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChH
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DET  109 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~  109 (351)
                      -++|+|+|+|||+||++|+++.|.+.++++++++.   +.++.|++|... .+.+.+++..+|++.|  +|+
T Consensus        20 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~~-~la~~~~I~~~PT~~~f~~g~   87 (137)
T d1qgva_          20 EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP-DFNKMYELYDPCTVMFFFRNK   87 (137)
T ss_dssp             CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-TTTTSSCSCSSCEEEEEETTE
T ss_pred             CCCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeeccccc-hhhhhcCeeeEEEEEEEeCCc
Confidence            36789999999999999999999999999999875   556666655443 4667777778888887  554

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.1e-11  Score=97.98  Aligned_cols=117  Identities=13%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             hhccCCCcEe-c-CCCcceeeccc-CCcEEEEEEe-cCCChhhH-HhHHHHHHHHHHhhcccCCce-EEEEEeCCCCHHH
Q 018726          140 LAIEGRDYVL-S-RDHRKITVSEL-AGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCF-EVVLVSTDRDHKE  213 (351)
Q Consensus       140 ~g~~~pdf~~-~-~~g~~~~l~~~-~gk~vll~F~-a~~C~~C~-~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~~~  213 (351)
                      +|+++|+|++ + .+|++++++++ +||.+||+|| +.|+|.|. .+.+.+.+.++.+.+   .+. .|+.++++.....
T Consensus         5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~---~g~~~i~~~s~~~~~~~   81 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSVNDAFVT   81 (161)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSCHHHH
T ss_pred             CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHH---cCCeEEEEEecCchhhh
Confidence            6999999999 4 55789999986 8999999888 67999995 588888888888875   554 5667777754433


Q ss_pred             HHhhhccCC-ceeeccCchhhHHHHHHcCcC------c------eeeEEEECCCCceEec
Q 018726          214 FDLNHSIMP-WLAIPYEDRARQDLCRIFNIK------G------IPALVLIGPDGKTIST  260 (351)
Q Consensus       214 ~~~~~~~~~-~~~~~~~~d~~~~~~~~~~i~------~------~P~~~lid~~G~v~~~  260 (351)
                       ..+..... -..+++..|+...+++.||+.      +      ...+++|+.+|+|++.
T Consensus        82 -~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~  140 (161)
T d1hd2a_          82 -GEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL  140 (161)
T ss_dssp             -HHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred             -hhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence             23332222 235677888899999999873      1      2335556679999876

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-12  Score=99.61  Aligned_cols=87  Identities=16%  Similarity=0.403  Sum_probs=62.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHH--HHh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHK--KLR  115 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~--~l~  115 (351)
                      ++|+++|.|||+||++|+++.|.+.++++.+++.+.  .+.++++|++.. .++..+++..+|++.+  +|+...  .+.
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~~~  100 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGS--EIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYT  100 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCC--CCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSCSSSCEECC
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhccccccccc--ceeeeccccccchhHHHHhCCccCCeEEEEECCeEeeeEEec
Confidence            579999999999999999999999999999977653  455666665544 4666778888888865  554332  344


Q ss_pred             hhhhhhHHhhhccc
Q 018726          116 IRKRREELKAIDDS  129 (351)
Q Consensus       116 ~~~~~~~l~~~~~~  129 (351)
                      |....+++..+++.
T Consensus       101 g~~~~~~l~~fi~~  114 (120)
T d1meka_         101 AGREADDIVNWLKK  114 (120)
T ss_dssp             CCSSHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHH
Confidence            44445555555443

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.20  E-value=6.3e-12  Score=93.21  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=59.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRIRK  118 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  118 (351)
                      ++++++|+||++||++|+.+.|.+.++++++.+    ..++.+++|... .+.+.+++..+|++.+  +|+...++.|. 
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~~-~~~~~~~V~~~Pt~i~~k~G~~v~~~~G~-   90 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVS-EVTEKENITSMPTFKVYKNGSSVDTLLGA-   90 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTH-HHHHHTTCCSSSEEEEEETTEEEEEEESC-
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccCc-ceeeeeeeecceEEEEEECCEEEEEEeCc-
Confidence            578999999999999999999999999998754    345555555443 4666778888888776  78776666663 


Q ss_pred             hhhHHhhhc
Q 018726          119 RREELKAID  127 (351)
Q Consensus       119 ~~~~l~~~~  127 (351)
                      ..+++.+.+
T Consensus        91 ~~~~l~~~i   99 (103)
T d1syra_          91 NDSALKQLI   99 (103)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            234444433

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=8.8e-12  Score=94.95  Aligned_cols=85  Identities=14%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHH--Hhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKK--LRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~--l~~  116 (351)
                      +++.++|.||++||++|+++.|.+.++++.+++.+  +.++.|+++... .++..+++..+|++.+  +|+....  +.+
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~~~~-~l~~~~~v~~~Pti~~f~~g~~~~~~~y~g  102 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTENQ-DLCMEHNIPGFPSLKIFKNSDVNNSIDYEG  102 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTCTTCEEECCS
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeeccchH-HHHHHhccccCCeEEEEECCEEeeeEEecC
Confidence            57899999999999999999999999999987643  555555555333 5777778888888887  6654433  334


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      ....+.+..++.
T Consensus       103 ~~~~~~l~~fi~  114 (119)
T d2b5ea4         103 PRTAEAIVQFMI  114 (119)
T ss_dssp             CCSHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            444455554443

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=2.7e-12  Score=91.74  Aligned_cols=63  Identities=13%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecCh
Q 018726           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE  108 (351)
Q Consensus        42 gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~  108 (351)
                      +|+.++.|||+||++|+.+.|.+.++++.+++.   +.++.++.|... ..++.+++..+|++.+++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~~-~la~~~~V~~~Pt~~i~~   64 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-QKAMEYGIMAVPTIVING   64 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC-CTTTSTTTCCSSEEEETT
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc---cccccccccccc-cccccCCceEeeEEEEEC
Confidence            588999999999999999999999999987655   455555555433 456667888888988744

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.18  E-value=8.4e-12  Score=94.47  Aligned_cols=81  Identities=15%  Similarity=0.301  Sum_probs=61.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-----hHHHHHhcCCceeeec--ChHHHHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-----GFEEHFKCMPWLAVPF--DETLHKK  113 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~  113 (351)
                      .+++++|+||++||++|+++.|.+.+++++++..     +.+++++...+     .+.+.+++..+|++.+  +|+...+
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~gk~~~~   99 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVR   99 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEEE
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeecccccccccccccccccccccEEEEEECCEEEEE
Confidence            6889999999999999999999999999987643     66777775322     3566677788888887  7776666


Q ss_pred             HhhhhhhhHHhhh
Q 018726          114 LRIRKRREELKAI  126 (351)
Q Consensus       114 l~~~~~~~~l~~~  126 (351)
                      +.|....+++..+
T Consensus       100 ~~G~~~~~el~~f  112 (115)
T d1zmaa1         100 CDSSMSAQEIKDF  112 (115)
T ss_dssp             CCTTCCHHHHHHH
T ss_pred             EcCCCCHHHHHHH
Confidence            6665555555443

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=2.2e-12  Score=101.32  Aligned_cols=85  Identities=19%  Similarity=0.341  Sum_probs=61.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHH--Hhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKK--LRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~--l~~  116 (351)
                      .+|+|+|.|||+||++|+.+.|.|.++++.+++.+  ..+.++++|.+.+. ++.+++..+|++.+  +|+....  +.|
T Consensus        29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~~~~-~~~~~v~~~Ptl~~f~~g~~~~~~~y~G  105 (140)
T d2b5ea1          29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHTEND-VRGVVIEGYPTIVLYPGGKKSESVVYQG  105 (140)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGGGCC-CSSCCCSSSSEEEEECCTTSCCCCBCCS
T ss_pred             CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeeccchh-ccccccccCCeEEEEECCEEcceeEeCC
Confidence            57899999999999999999999999999998765  35677788776543 34566777888876  5554332  334


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      ....+.+..++.
T Consensus       106 ~~t~~~l~~fi~  117 (140)
T d2b5ea1         106 SRSLDSLFDFIK  117 (140)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            445555555544

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=2.4e-13  Score=110.16  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=58.4

Q ss_pred             eecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHH
Q 018726          157 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  236 (351)
Q Consensus       157 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  236 (351)
                      .+++++++++++.||++|||+|+.+.|.|.++++.++     ++.+..|++|.+                       ...
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-----~~~~~~i~~d~~-----------------------~~~   99 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----NIELAIISKGRA-----------------------EDD   99 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----TEEEEEECHHHH-----------------------HHH
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-----CCcEEEEECccC-----------------------HHH
Confidence            3566788999999999999999999999999998874     466777777643                       344


Q ss_pred             HHHc---CcCceeeEEEECCCCceEec
Q 018726          237 CRIF---NIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       237 ~~~~---~i~~~P~~~lid~~G~v~~~  260 (351)
                      .+.|   +...+|.++++|.++.+..+
T Consensus       100 ~~~~~~~~~~~~p~~~~~d~~~~~~~~  126 (166)
T d1z6na1         100 LRQRLALERIAIPLVLVLDEEFNLLGR  126 (166)
T ss_dssp             TTTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred             HHHHHHhccccccceeecCccchhccc
Confidence            4555   34567888888888877655

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-11  Score=93.21  Aligned_cols=67  Identities=21%  Similarity=0.442  Sum_probs=54.0

Q ss_pred             ccCCCCCeEEEEEeCC-------CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC-----C-hhhHHHHHhcCCcee
Q 018726           37 LSSCGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----D-ENGFEEHFKCMPWLA  103 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~-------wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~-----~-~~~~~~~~~~~~~~~  103 (351)
                      +++.+||+|+|+|||+       ||+||+++.|.+.++++.++++   +.++.|+++.     | ...+.+.+++..+||
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT   92 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPT   92 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHHHHCTTCHHHHHHCCCSSSE
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcccchhhhhHHHhCCeEEEEE
Confidence            3456899999999995       9999999999999999988755   7788888753     2 224677788888889


Q ss_pred             eec
Q 018726          104 VPF  106 (351)
Q Consensus       104 ~~~  106 (351)
                      +.+
T Consensus        93 ~i~   95 (119)
T d1woua_          93 LLK   95 (119)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.15  E-value=1.9e-11  Score=96.36  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             CCCCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhc
Q 018726           30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC   98 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (351)
                      +.++. +++++++||+++|+|||+||++|+.++|.+.++++.++     +++++|+.+.+.....++...
T Consensus        18 ~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----~~~~~i~~~~~~~~~~~~~~~   82 (144)
T d1knga_          18 NVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-----FQLVGINYKDAADNARRFLGR   82 (144)
T ss_dssp             TEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-----SEEEEEEESCCHHHHHHHHHH
T ss_pred             CCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhccC-----ceeEEEEeeechHHHHHHHHH
Confidence            44446 88899999999999999999999999999998876543     678889988877666666543

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=4.9e-11  Score=96.87  Aligned_cols=81  Identities=23%  Similarity=0.379  Sum_probs=67.3

Q ss_pred             ecccCcce-eeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC---hhhHH
Q 018726           20 LASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD---ENGFE   93 (351)
Q Consensus        20 ~~~~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~   93 (351)
                      +..+-++| |.+.+|+ +++++++||+++|.||++||+ .|...++.+.++++.+.+.+.++.+++|++|..   .+.++
T Consensus         7 ~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~   86 (172)
T d1xzoa1           7 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLK   86 (172)
T ss_dssp             CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH
T ss_pred             CCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHH
Confidence            33334555 9999999 999999999999999999997 699999999999999987777799999999843   34467


Q ss_pred             HHHhcCC
Q 018726           94 EHFKCMP  100 (351)
Q Consensus        94 ~~~~~~~  100 (351)
                      ++.+.++
T Consensus        87 ~y~~~~~   93 (172)
T d1xzoa1          87 KFAANYP   93 (172)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            7766554

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1e-11  Score=94.25  Aligned_cols=70  Identities=17%  Similarity=0.368  Sum_probs=49.4

Q ss_pred             cccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHhcCCceeeec
Q 018726           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        36 ~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~~~~~~~~~~  106 (351)
                      .++..+||+|+|+|||+||++|+.+.|.+..+.+..+... ++.++.+.++.+..   .+.+.+++.++|++.+
T Consensus        16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1          16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceEEEE
Confidence            3455689999999999999999999999844433332221 14566666654432   3677788888999887

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=2.1e-10  Score=87.51  Aligned_cols=84  Identities=10%  Similarity=0.044  Sum_probs=61.3

Q ss_pred             CCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCc
Q 018726          151 RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED  230 (351)
Q Consensus       151 ~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~  230 (351)
                      ++...++----+.+.+||.|||+||++|++  |.+.++++++.. ...++.+..|+++..                  ..
T Consensus         7 L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~-~~~~v~ia~Vd~~~~------------------~~   65 (122)
T d2c0ga2           7 LDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHK-ATKDLLIATVGVKDY------------------GE   65 (122)
T ss_dssp             CCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHH-HCSSEEEEEEEECSS------------------TT
T ss_pred             cChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHH-hCCCeEEEecccccc------------------cc
Confidence            344444333334689999999999999994  899999998865 456788888887541                  01


Q ss_pred             hhhHHHHHHcCc--CceeeEEEECCCC
Q 018726          231 RARQDLCRIFNI--KGIPALVLIGPDG  255 (351)
Q Consensus       231 d~~~~~~~~~~i--~~~P~~~lid~~G  255 (351)
                      ..+.+++++|+|  .++||++++..++
T Consensus        66 ~~n~~l~~~~~i~~~~~PTi~~f~~g~   92 (122)
T d2c0ga2          66 LENKALGDRYKVDDKNFPSIFLFKGNA   92 (122)
T ss_dssp             CTTHHHHHHTTCCTTSCCEEEEESSSS
T ss_pred             ccCHHHHHHhhcccCCCCcEEEEeCCc
Confidence            115789999988  5799999995433

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.12  E-value=1.6e-11  Score=93.01  Aligned_cols=68  Identities=21%  Similarity=0.335  Sum_probs=49.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCC-ceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHc
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH-CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  240 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  240 (351)
                      .+|++||.||++||++|+.+.|.+.++++.+...... .+.+.....+                          .....+
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~   72 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT--------------------------ANDVPD   72 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------------TSCCSS
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------------hhhhcc
Confidence            4689999999999999999999999999999751111 1223222222                          234568


Q ss_pred             CcCceeeEEEECCCCc
Q 018726          241 NIKGIPALVLIGPDGK  256 (351)
Q Consensus       241 ~i~~~P~~~lid~~G~  256 (351)
                      +|.++||++++ ++|+
T Consensus        73 ~v~~~Pti~~f-~~g~   87 (116)
T d2djja1          73 EIQGFPTIKLY-PAGA   87 (116)
T ss_dssp             CCSSSSEEEEE-CSSC
T ss_pred             cccCCCEEEEE-ECCc
Confidence            99999999999 5554

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=3.2e-12  Score=98.92  Aligned_cols=85  Identities=9%  Similarity=0.010  Sum_probs=65.2

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ..+++|+|.|||+||++|+.+.|.+.++++++.+..    +.++.+|.+.+ .+.+.+++..+|++.+  +|+...++.|
T Consensus        34 ~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~----~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~~v~~~~G  109 (132)
T d2hfda1          34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNG  109 (132)
T ss_dssp             CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC----EEEEEECHHHHHHHHHHHTCCSCCEEEEEETTEEEEEECC
T ss_pred             CCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc----ceeEEEEecCCHHHHHhhccCcceeEEEEEcCcEeeeecC
Confidence            356899999999999999999999999999988763    44445554433 5788888888888887  8887777777


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      .....++...+.
T Consensus       110 ~~~~~~l~~~i~  121 (132)
T d2hfda1         110 IHPWAELINLMR  121 (132)
T ss_dssp             CSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            656556555544

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.12  E-value=1.7e-10  Score=88.34  Aligned_cols=84  Identities=8%  Similarity=0.038  Sum_probs=59.1

Q ss_pred             cCCCcceeecccCCcEEEEEEecCCChhh------HHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCc
Q 018726          150 SRDHRKITVSELAGKTIGLYFGAHWCPPC------RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW  223 (351)
Q Consensus       150 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C------~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~  223 (351)
                      .++.+++.-.-.+++.++|.||++||++|      ..+.+.+..+++.+..   .++.|..|+++..             
T Consensus        15 ~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~---~~v~~a~Vd~~~~-------------   78 (124)
T d1a8ya1          15 NVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED---KGVGFGLVDSEKD-------------   78 (124)
T ss_dssp             ECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG---GTEEEEEEETTTS-------------
T ss_pred             ECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc---CCeEEEEEEeecc-------------
Confidence            44444443222246789999999999864      3344445555555543   6688888888865             


Q ss_pred             eeeccCchhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          224 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       224 ~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                                ..++++|+|.++||++++ ++|+++..
T Consensus        79 ----------~~l~~~~~I~~yPTi~~f-~~g~~~~y  104 (124)
T d1a8ya1          79 ----------AAVAKKLGLTEEDSIYVF-KEDEVIEY  104 (124)
T ss_dssp             ----------HHHHHTTTCCSTTCEEEE-ESSSEEEC
T ss_pred             ----------cchhhccccccCCcEEEe-ccCccEEe
Confidence                      689999999999999999 67776643

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.11  E-value=6.3e-12  Score=89.72  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=53.8

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHHHHHHhhhhhhhHHh
Q 018726           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRKRREELK  124 (351)
Q Consensus        45 v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  124 (351)
                      .+..|||+||++|+++.|.+++++++++++   +.++.+++|.+. ...+.+++..+|++.++++.  ++.|....+.+.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~-~l~~~~~V~~~Pt~~~~~~~--~~~G~~~~~~l~   77 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR-EKAIEYGLMAVPAIAINGVV--RFVGAPSREELF   77 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG-GGGGGTCSSCSSEEEETTTE--EEECSSCCHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccch-hhHHhcCceEeCEEEECCcE--EEEcCCCHHHHH
Confidence            355699999999999999999999999765   566666666544 35667788888898886642  334433334443


Q ss_pred             hh
Q 018726          125 AI  126 (351)
Q Consensus       125 ~~  126 (351)
                      +.
T Consensus        78 ~~   79 (85)
T d1nhoa_          78 EA   79 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=7.8e-12  Score=95.04  Aligned_cols=84  Identities=14%  Similarity=0.092  Sum_probs=57.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHHHHHhhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLHKKLRIR  117 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~  117 (351)
                      .+++|++.|||+||++|+.+.|.+.++++++.+..    +.++.+|.+.+ .+++.+++..+|++.+  +|+...++.|.
T Consensus        29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~----~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~  104 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD----WQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGI  104 (119)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC----CEEEEECHHHHHHHHHTTTCCSSSEEEEESCC----CEESC
T ss_pred             CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc----eEEEEEECCCCHHHHHhcCcCcceEEEEEEcCeEEEEeeCC
Confidence            56799999999999999999999999999987643    44445554433 5777888888888887  88888888876


Q ss_pred             hhhhHHhhhcc
Q 018726          118 KRREELKAIDD  128 (351)
Q Consensus       118 ~~~~~l~~~~~  128 (351)
                      ...+++.+.++
T Consensus       105 ~~~~~l~~~i~  115 (119)
T d2es7a1         105 HPWAELLTLMR  115 (119)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            66566555443

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=1.1e-10  Score=91.78  Aligned_cols=66  Identities=20%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             CCc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC-----hhhHHHHHhcCC
Q 018726           32 QGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-----ENGFEEHFKCMP  100 (351)
Q Consensus        32 ~g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~-----~~~~~~~~~~~~  100 (351)
                      +|+ +.++.+.||+++|+||++||++|+..+|.+.++++++++.   +++++|+++..     .+.+.++.+..+
T Consensus        18 ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~   89 (143)
T d2b5xa1          18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHD   89 (143)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTT
T ss_pred             CCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhhhhhHHHhhc
Confidence            688 8888899999999999999999999999999999999865   68899988642     223566655444

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.05  E-value=5.1e-10  Score=90.00  Aligned_cols=68  Identities=22%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             ecccCcce-eeC----CCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           20 LASEGVEF-LLS----RQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        20 ~~~~~~~~-l~~----~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +..+.++| |.+    .++. +++++++||+++|.||+. ||++|...++.+.++++++++.|  ++++.|+.|..+
T Consensus         3 vG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D~~~   77 (166)
T d1we0a1           3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDTHF   77 (166)
T ss_dssp             TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSCHH
T ss_pred             CCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccccHH
Confidence            34455566 442    4556 899999999999999976 99999999999999999999988  899999998643

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.04  E-value=9.3e-11  Score=85.45  Aligned_cols=67  Identities=12%  Similarity=-0.025  Sum_probs=51.8

Q ss_pred             CCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHH
Q 018726           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL  110 (351)
Q Consensus        39 ~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
                      .++|...++.|+++|||+|+.+.|.+.+++..+.    ++.+..++++... ...+.+++..+|++.++|+.
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~----~i~~~~vd~~~~~-~l~~~~~I~~vPt~~~ng~~   78 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQ-NEITERNVMGVPAVFVNGKE   78 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-HHHHHTTCCSSSEEEETTEE
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC----ceEEEEEecccch-HHHhhcccccccEEEECCEE
Confidence            4578888999999999999999999999987642    2566666655544 46666788888898777764

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.04  E-value=2.4e-10  Score=92.15  Aligned_cols=60  Identities=30%  Similarity=0.289  Sum_probs=56.0

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      |.+.+|+ +++++++||+|+|.|| ++||+.|...++.+.++++++++.|  ++++.|+.|...
T Consensus        18 l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~~~   79 (167)
T d1e2ya_          18 MPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDSEY   79 (167)
T ss_dssp             CSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHH
T ss_pred             ccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCcHH
Confidence            6788999 9999999999999999 9999999999999999999999988  899999998644

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.8e-10  Score=88.16  Aligned_cols=78  Identities=14%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             ecccCCcEEEEEEecCCChhhHHhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhH
Q 018726          158 VSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  234 (351)
Q Consensus       158 l~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~  234 (351)
                      .+.-++|+++|+|+++||++|+.+....   .++.+.++    .++.++.|+.+...                     ..
T Consensus        37 ~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~----~~fV~~~v~~~~~e---------------------~~   91 (147)
T d2dlxa1          37 CGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR----EHFIFWQVYHDSEE---------------------GQ   91 (147)
T ss_dssp             HHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH----HTEEEEEEESSSHH---------------------HH
T ss_pred             HHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh----hheeEeeecccchh---------------------hh
Confidence            3444689999999999999999987644   34444444    45667777766532                     46


Q ss_pred             HHHHHcCcCceeeEEEECC-CCceEec
Q 018726          235 DLCRIFNIKGIPALVLIGP-DGKTIST  260 (351)
Q Consensus       235 ~~~~~~~i~~~P~~~lid~-~G~v~~~  260 (351)
                      .+.+.|++.++|++++||| .|+++..
T Consensus        92 ~~~~~y~v~~~Pti~~idp~~ge~v~~  118 (147)
T d2dlxa1          92 RYIQFYKLGDFPYVSILDPRTGQKLVE  118 (147)
T ss_dssp             HHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             hhhhheecCceeEEEEEeCCCCeEecc
Confidence            8899999999999999998 4666543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=2e-10  Score=87.59  Aligned_cols=64  Identities=6%  Similarity=0.036  Sum_probs=49.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC---C-hhhHHHHHhc--CCceeeec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---D-ENGFEEHFKC--MPWLAVPF  106 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~---~-~~~~~~~~~~--~~~~~~~~  106 (351)
                      ++|.+||+||||||++|+  .|.|.++++.+......+.+..|+++.   + ...++..++.  .++|++.+
T Consensus        18 ~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~~   87 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFL   87 (122)
T ss_dssp             TSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEE
T ss_pred             cCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEEE
Confidence            679999999999999999  499999999987766556677777653   2 2346666554  56788887

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.97  E-value=5.3e-11  Score=89.98  Aligned_cols=86  Identities=16%  Similarity=0.248  Sum_probs=53.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHH--HHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHK--KLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~--~l~~  116 (351)
                      ++|+++|.|||+||++|+++.|.|.++++.+........+.....+.+..  +..+++..+|++.+  +|+...  .+.|
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~Pti~~f~~g~~~~~~~~~g   96 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN--DVPDEIQGFPTIKLYPAGAKGQPVTYSG   96 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS--CCSSCCSSSSEEEEECSSCTTSCCCCCC
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchh--hhcccccCCCEEEEEECCccCceEEecC
Confidence            57899999999999999999999999999997763111122222222221  12345667788865  454322  2334


Q ss_pred             hhhhhHHhhhcc
Q 018726          117 RKRREELKAIDD  128 (351)
Q Consensus       117 ~~~~~~l~~~~~  128 (351)
                      ....+++..+++
T Consensus        97 ~~~~~~l~~fi~  108 (116)
T d2djja1          97 SRTVEDLIKFIA  108 (116)
T ss_dssp             CSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            444555555544

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.6e-10  Score=90.15  Aligned_cols=58  Identities=24%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             eeCCC-Cc-ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           28 LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        28 l~~~~-g~-~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +.+.+ |+ +++++++||+|||.+||+|||+|++..+.|++|+++|++.|  ++|+.+.++.
T Consensus         8 ~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nq   67 (184)
T d2f8aa1           8 ARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQ   67 (184)
T ss_dssp             ECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred             EEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccc
Confidence            66765 77 99999999999999999999999999999999999999998  9999998874

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=98.93  E-value=1.2e-09  Score=87.48  Aligned_cols=118  Identities=18%  Similarity=0.207  Sum_probs=84.7

Q ss_pred             hhhccCCCcEe-c----CCCcceeeccc-CCcEEEEEEe-cCCChhhH-HhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018726          139 LLAIEGRDYVL-S----RDHRKITVSEL-AGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCFEVVLVSTDRD  210 (351)
Q Consensus       139 ~~g~~~pdf~~-~----~~g~~~~l~~~-~gk~vll~F~-a~~C~~C~-~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  210 (351)
                      .+|+++|+|++ .    ..+++++++++ +||.+||+|| +.+.+.|. +..+......+.+.+  ....+|+.|++|..
T Consensus         5 ~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~--~g~~~v~~isvd~~   82 (162)
T d1tp9a1           5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS--KGVTEILCISVNDP   82 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH--TTCCCEEEEESSCH
T ss_pred             CCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHH--cCCcceeeeeccch
Confidence            37999999998 2    23467889885 8999888887 67899995 566777777777764  23457888888853


Q ss_pred             HHHHHhhhccCC-ceeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEec
Q 018726          211 HKEFDLNHSIMP-WLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       211 ~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~  260 (351)
                       ....++....+ ...++...|+...+++.||+.           ....++||| +|+|++.
T Consensus        83 -~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~  142 (162)
T d1tp9a1          83 -FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA  142 (162)
T ss_dssp             -HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred             -hhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence             33333333333 245777788889999999863           235689998 8999876

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.87  E-value=3.8e-09  Score=84.57  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             hhhccCCCcEe-cCCC---cceeeccc-CCcEEEEEEe-cCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018726          139 LLAIEGRDYVL-SRDH---RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  212 (351)
Q Consensus       139 ~~g~~~pdf~~-~~~g---~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  212 (351)
                      +.|+++|||++ ...|   +.++++++ +||.|||+|+ +.+.|.|..++..+...+.++......+ .++.++++ +..
T Consensus         2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~-~vv~~~s~-d~~   79 (163)
T d1nm3a2           2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVD-DILVVSVN-DTF   79 (163)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCC-EEEEEESS-CHH
T ss_pred             CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhccc-ceeeeecC-CHH
Confidence            57999999999 5555   47889996 8998888776 5688889998776554443322111122 34445544 333


Q ss_pred             HHHhhhccCCceeeccCchhhHHHHHHcCcC-----------ceeeEEEECCCCceEec
Q 018726          213 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  260 (351)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~  260 (351)
                      ...++.+......+++..|....+++.||+.           ....++||| +|+|++.
T Consensus        80 ~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~  137 (163)
T d1nm3a2          80 VMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM  137 (163)
T ss_dssp             HHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             HHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence            3333334333345777888888999998762           456799998 9999876

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.4e-11  Score=91.75  Aligned_cols=69  Identities=13%  Similarity=0.340  Sum_probs=47.5

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhh-HHH-HHhcCCceeeec
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-FEE-HFKCMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~-~~~-~~~~~~~~~~~~  106 (351)
                      +..+..+||+|+|+|||+||++|+.+.|.+.+..+..+..   .+++.|++|.+... ... +.....+|++.+
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~   88 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEEPKDEDFSPDGGYIPRILF   88 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGSCSCGGGCTTCSCSSEEEE
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc---CCcEEEeCCCCcCHHHHHHHhhcccceeEEE
Confidence            4445568999999999999999999999998776654332   23667777755432 222 234445677776

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.87  E-value=8.5e-10  Score=88.13  Aligned_cols=78  Identities=19%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             cCcce-eeCCCCc-ccccCC--CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           23 EGVEF-LLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~--~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      ..++| |.+.+|+ ++++++  +||+++|.|| ++||++|...++.+.++++++++.+  +.++.++.|.. +...++..
T Consensus         7 ~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~-~~~~~~~~   83 (160)
T d2cx4a1           7 KAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDSP-WCLKKFKD   83 (160)
T ss_dssp             BCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESSCH-HHHHHHHH
T ss_pred             CCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--cccccccccch-hhhhhhcc
Confidence            34455 8899999 999987  8999999999 8999999999999999999998887  78888888743 33334332


Q ss_pred             --cCCcee
Q 018726           98 --CMPWLA  103 (351)
Q Consensus        98 --~~~~~~  103 (351)
                        ..+++.
T Consensus        84 ~~~~~~~~   91 (160)
T d2cx4a1          84 ENRLAFNL   91 (160)
T ss_dssp             HHTCSSEE
T ss_pred             cceeeEEE
Confidence              444543

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.1e-09  Score=91.94  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=57.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      ++.+|||.||++||++|+.+.+.|.+++.+|+     .+.++.|+.+.                        ..+...|+
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-----~vkF~ki~~~~------------------------~~~~~~~~  169 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----MVKFCKIRASN------------------------TGAGDRFS  169 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----TSEEEEEEHHH------------------------HTCSTTSC
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-----cceEEEEcccc------------------------chhHHhCC
Confidence            35689999999999999999999999999885     46777776552                        23456799


Q ss_pred             cCceeeEEEECCCCceEec
Q 018726          242 IKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~~P~~~lid~~G~v~~~  260 (351)
                      +.++||++++ ++|+++.+
T Consensus       170 i~~lPtl~~y-k~G~~v~~  187 (217)
T d2trcp_         170 SDVLPTLLVY-KGGELISN  187 (217)
T ss_dssp             GGGCSEEEEE-ETTEEEEE
T ss_pred             CCCCCeEEEE-ECCEEEEE
Confidence            9999999999 99999877

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=3.3e-09  Score=85.50  Aligned_cols=74  Identities=16%  Similarity=0.283  Sum_probs=58.5

Q ss_pred             CCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHHHh---cCCce
Q 018726           30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFK---CMPWL  102 (351)
Q Consensus        30 ~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~~~---~~~~~  102 (351)
                      +..|+ +++++++||+++|.|| ++||+.|...++.+.++++++++.|  +++++|+.|....  .+.+.+.   ..++|
T Consensus        31 ~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv~is~d~~~~~~~~~~~~~~~~~~~f~  108 (169)
T d2bmxa1          31 GDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDSEFAHFQWRAQHNDLKTLPFP  108 (169)
T ss_dssp             GGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHHHCTTGGGCCSC
T ss_pred             cccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--cceeeccccchhhhhhhcccccccccceEE
Confidence            33446 8899999999999999 8999999999999999999999988  8999999997433  2344333   35554


Q ss_pred             eee
Q 018726          103 AVP  105 (351)
Q Consensus       103 ~~~  105 (351)
                      .+.
T Consensus       109 ll~  111 (169)
T d2bmxa1         109 MLS  111 (169)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.83  E-value=5.5e-10  Score=85.33  Aligned_cols=82  Identities=10%  Similarity=0.022  Sum_probs=52.5

Q ss_pred             CCCeEEEEEeCCCChhh------hhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec--ChHHH
Q 018726           41 GGKTICLFFSANWCRPC------KTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF--DETLH  111 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C------~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~--~~~~~  111 (351)
                      +++.++|.||||||++|      ..+.+.+..+++.+.+.+    |.++.+|++.+ .+++.+++.++||+.+  +|+. 
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~----v~~a~Vd~~~~~~l~~~~~I~~yPTi~~f~~g~~-  101 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG----VGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV-  101 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT----EEEEEEETTTSHHHHHTTTCCSTTCEEEEESSSE-
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC----eEEEEEEeecccchhhccccccCCcEEEeccCcc-
Confidence            57889999999999974      344445555555555544    55666666543 5777788888888877  5543 


Q ss_pred             HHHhhhhhhhHHhhhc
Q 018726          112 KKLRIRKRREELKAID  127 (351)
Q Consensus       112 ~~l~~~~~~~~l~~~~  127 (351)
                      .++.|....+.+..++
T Consensus       102 ~~y~G~r~~~~l~~fi  117 (124)
T d1a8ya1         102 IEYDGEFSADTLVEFL  117 (124)
T ss_dssp             EECCSCCSHHHHHHHH
T ss_pred             EEeeCCCCHHHHHHHH
Confidence            3455554544454443

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.81  E-value=4.1e-09  Score=86.62  Aligned_cols=60  Identities=28%  Similarity=0.333  Sum_probs=55.3

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      |.+.+|+ +++++++||+|+|.|| ++||+.|...++.+.+++++++..|  ++|+.|+.|...
T Consensus        18 l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds~~   79 (194)
T d1uula_          18 MPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSEY   79 (194)
T ss_dssp             CTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH
T ss_pred             ccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCchh
Confidence            5678888 9999999999999999 8999999999999999999999887  899999999643

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.81  E-value=7e-10  Score=89.30  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=52.4

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh--cCCceeeec
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK--CMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~--~~~~~~~~~  106 (351)
                      -.++.++++++++.||++|||+|++.+|.+.++++.+++    +++.+|++|.+.+...++..  ..++|.+.+
T Consensus        47 ~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~----~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~  116 (166)
T d1z6na1          47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (166)
T ss_dssp             HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             HHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC----CcEEEEECccCHHHHHHHHHhccccccceee
Confidence            446678999999999999999999999999999998653    67888888876655555422  344555555

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.80  E-value=7.9e-09  Score=82.18  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=54.8

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +.+.+|+ +++++++||+|+|.|| +.||+.|...++.+.++++++.+.|  .+++.|+.|...
T Consensus        11 ~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~~   72 (158)
T d1zyea1          11 VVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSHF   72 (158)
T ss_dssp             ECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCHH
T ss_pred             eeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCHH
Confidence            4567788 9999999999999999 8999999999999999999999988  899999999754

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=4.8e-09  Score=83.00  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             cCcce-eeCCCCc-ccccCCCCC-eEEE-EEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh-
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGK-TICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK-   97 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk-~v~v-~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~-   97 (351)
                      +.++| |.+.+|+ ++++++.|| ++++ .|+++||+.|...++.+.++++++...|  ++++.++.|... ...++.+ 
T Consensus         7 ~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d~~~-~~~~~~~~   83 (153)
T d1xvwa1           7 TAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGPPP-THKIWATQ   83 (153)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCCHH-HHHHHHHH
T ss_pred             CCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccchhhh-HHHHHhhh
Confidence            34555 8899999 999999985 4444 4558999999999999999999998777  889999887533 3444433 


Q ss_pred             -cCCcee
Q 018726           98 -CMPWLA  103 (351)
Q Consensus        98 -~~~~~~  103 (351)
                       ..++|.
T Consensus        84 ~~~~~~~   90 (153)
T d1xvwa1          84 SGFTFPL   90 (153)
T ss_dssp             HTCCSCE
T ss_pred             hccceeE
Confidence             344443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=4.6e-09  Score=84.17  Aligned_cols=61  Identities=23%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      ..++| |.+.+|+ +++++++||+++|.|| +.||+.|...+|.+.+++.++.  +  ++++.|+.|.
T Consensus        23 ~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~   86 (164)
T d1qxha_          23 KAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--N--TVVLCISADL   86 (164)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--T--EEEEEEESSC
T ss_pred             CCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--c--ceeeeEEcCC
Confidence            44556 8999999 9999999999999999 5799999999999999888654  2  7899999985

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=9.9e-09  Score=81.43  Aligned_cols=77  Identities=13%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             cCcce-eeCCCCc-ccccCC--CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh
Q 018726           23 EGVEF-LLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~--~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (351)
                      ..+++ |.+.+|+ ++++++  +|++|++.|| ++||+.|...++.+.+.++++++.   ..++.|+.|. .....++.+
T Consensus        10 ~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d~-~~~~~~f~~   85 (156)
T d2a4va1          10 PIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSADS-VTSQKKFQS   85 (156)
T ss_dssp             BCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESCC-HHHHHHHHH
T ss_pred             CCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccch-hhhHHhhhc
Confidence            44555 9999999 999997  6778888888 799999999999999999999765   5678888774 334444443


Q ss_pred             --cCCcee
Q 018726           98 --CMPWLA  103 (351)
Q Consensus        98 --~~~~~~  103 (351)
                        ..++|.
T Consensus        86 ~~~l~f~~   93 (156)
T d2a4va1          86 KQNLPYHL   93 (156)
T ss_dssp             HHTCSSEE
T ss_pred             ccCcccee
Confidence              345543

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=1.7e-08  Score=81.16  Aligned_cols=65  Identities=25%  Similarity=0.352  Sum_probs=56.6

Q ss_pred             cCcce-eeCCCC-----c-ccccCCCCC-eEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQG-----K-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g-----~-~~~~~~~gk-~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..++| |.+.+|     + ++++++.|| +++|.|| +.||+.|...++.+.+.++++++.|  ++++.|+.|...
T Consensus         6 ~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~~   79 (170)
T d1zofa1           6 LAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSEQ   79 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred             cCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccchh
Confidence            55666 776666     5 899999986 7999999 8999999999999999999999988  899999998754

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.65  E-value=2.3e-08  Score=81.32  Aligned_cols=84  Identities=17%  Similarity=0.264  Sum_probs=62.2

Q ss_pred             eecccCcce-eeC-CCC--c-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--
Q 018726           19 VLASEGVEF-LLS-RQG--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--   90 (351)
Q Consensus        19 ~~~~~~~~~-l~~-~~g--~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--   90 (351)
                      ++..+.++| +.+ .+|  . +++++++||+++|.|| +.||+.|...++.+++.++++.+.|  ++++.||.|.-..  
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds~~sh~   79 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHK   79 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHHHHH
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccCHHHHH
Confidence            344455555 332 244  4 7899999999999999 6889999999999999999999887  8999999986432  


Q ss_pred             hHHHHHh---cCCceee
Q 018726           91 GFEEHFK---CMPWLAV  104 (351)
Q Consensus        91 ~~~~~~~---~~~~~~~  104 (351)
                      .+.+...   ..++|.+
T Consensus        80 ~f~~~~~~~~~~~fpll   96 (186)
T d1n8ja_          80 AWHSSSETIAKIKYAMI   96 (186)
T ss_dssp             HHHHHCTTGGGCCSEEE
T ss_pred             HHhcccccccccccccc
Confidence            3444433   3455443

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=1.2e-08  Score=74.41  Aligned_cols=64  Identities=16%  Similarity=0.281  Sum_probs=46.7

Q ss_pred             CcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCc
Q 018726          163 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  242 (351)
Q Consensus       163 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  242 (351)
                      .-++|+.|+++||++|+...+.|+++..+|.      +.+  +.+|.+.                     +.++.++|++
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~------~~~--v~vd~~~---------------------~~~l~~~y~~   65 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI------LQE--VDITLPE---------------------NSTWYERYKF   65 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE------EEE--EETTSST---------------------THHHHHHSSS
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcc------eEE--Eeccccc---------------------CHHHHHHhcc
Confidence            4578899999999999999999887755543      234  4444332                     4789999998


Q ss_pred             CceeeEEEECCCCceEe
Q 018726          243 KGIPALVLIGPDGKTIS  259 (351)
Q Consensus       243 ~~~P~~~lid~~G~v~~  259 (351)
                      . +|++++   +|+.+.
T Consensus        66 ~-VPvl~i---dg~~~~   78 (100)
T d1wjka_          66 D-IPVFHL---NGQFLM   78 (100)
T ss_dssp             S-CSEEEE---SSSEEE
T ss_pred             c-CCceee---cCceEE
Confidence            7 997654   566653

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.7e-08  Score=75.38  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=51.3

Q ss_pred             eeeCCCCc-ccccCCCCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHHhhcCCc--EEEEEEEecC
Q 018726           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTE--LEVIFISFDH   87 (351)
Q Consensus        27 ~l~~~~g~-~~~~~~~gk~v~v~F~a~wC~-~C~~~~p~~~~l~~~~~~~~~~--~~iv~i~~d~   87 (351)
                      .|++.+|+ +++++++||++||.||++||+ .|....+.+.++++.+...+..  +.+..+..+.
T Consensus         4 ~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (160)
T d1wp0a1           4 SLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   68 (160)
T ss_dssp             EEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCT
T ss_pred             EEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCC
Confidence            49999999 999999999999999999997 5999999999999998666432  4555666654

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.57  E-value=7.6e-08  Score=76.74  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             ccCcce-eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        22 ~~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ...++| |.+.+|+ +++++++||+++|.|| +.||+.|...++.+.+.++++.  +  +.++.|+.|...
T Consensus        20 ~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~~~   86 (163)
T d1psqa_          20 DKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--N--TVVLTVSMDLPF   86 (163)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--T--EEEEEEESSCHH
T ss_pred             CCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--c--cceEEEEeccHH
Confidence            345556 9999999 9999999999999999 6799999999999988877764  2  789999988643

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=5.1e-08  Score=78.04  Aligned_cols=62  Identities=19%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             ccCcce-eeCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCC
Q 018726           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (351)
Q Consensus        22 ~~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~   88 (351)
                      ...++| |.+.+|+ +++++++||+++|.||+. ||+.|...++.+++.+++   .|  ++++.|+.|..
T Consensus        21 ~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~g--~~vv~Is~d~~   85 (166)
T d1xvqa_          21 SPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKDLP   85 (166)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESSCH
T ss_pred             CCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc---cc--ccccccccchH
Confidence            344556 9999999 999999999999999965 777899988887765554   44  68999998854

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.50  E-value=8.4e-08  Score=76.53  Aligned_cols=63  Identities=22%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             cCcce-eeCCCCc-ccccCCCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g~-~~~~~~~gk~v~v~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..++| |.+.+|+ +++++++||+++|.||.. ||+.|...++.+++.++++++    +.++.|++|...
T Consensus        21 ~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~----~~vi~iS~d~~~   86 (164)
T d1q98a_          21 IVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN----TIVLCISADLPF   86 (164)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT----EEEEEEESSCHH
T ss_pred             CCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhcc----ceEEeecCCcHH
Confidence            45556 9999999 999999999999999965 777799999999999999863    689999998543

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1.9e-08  Score=76.31  Aligned_cols=89  Identities=11%  Similarity=0.077  Sum_probs=59.3

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcE--EEEEEEecCChhh-HHHH--HhcCCceeeec--ChHHH-
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL--EVIFISFDHDENG-FEEH--FKCMPWLAVPF--DETLH-  111 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~--~iv~i~~d~~~~~-~~~~--~~~~~~~~~~~--~~~~~-  111 (351)
                      -++|.++|+||++||.+|.  .|.+.++++.+.+....+  +|.+.++|++.+. .++.  +++.++|++.+  +|+.. 
T Consensus        19 ~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~~f~~G~~~~   96 (122)
T d1g7ea_          19 PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFEN   96 (122)
T ss_dssp             GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEEEEEESSCCCC
T ss_pred             hhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeEEEEecCcccC
Confidence            3689999999999998886  489999999998764322  2333445666543 4443  45668889876  55432 


Q ss_pred             -HHHhhhhhhhHHhhhcccc
Q 018726          112 -KKLRIRKRREELKAIDDSK  130 (351)
Q Consensus       112 -~~l~~~~~~~~l~~~~~~~  130 (351)
                       .++.|....+.+.++++..
T Consensus        97 ~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          97 PVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             CEEEESCCCHHHHHHHHHTT
T ss_pred             ceecCCCCCHHHHHHHHHhc
Confidence             2455666666666665543

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.48  E-value=2.3e-07  Score=74.33  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=52.0

Q ss_pred             CCCCc-ccccCCCC-CeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           30 SRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        30 ~~~g~-~~~~~~~g-k~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +.+++ ++++++.| |+++|.|| +.||+.|...++.+++.++++++.|  ++++.|+.|.-.
T Consensus        13 d~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~~   73 (170)
T d2h01a1          13 DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSKF   73 (170)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred             CCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcHH
Confidence            56666 99999987 88999999 7999999999999999999999988  899999998643

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.45  E-value=1.9e-07  Score=78.47  Aligned_cols=65  Identities=23%  Similarity=0.345  Sum_probs=55.6

Q ss_pred             cCcce-eeCCCCcccccC---CCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQGKVPLSS---CGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g~~~~~~---~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..++| +.+.+|++.+++   .+||+++|.|| ++||+.|...++.+.++++++++.|  ++++.||+|...
T Consensus         6 ~aPdF~l~t~~G~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~   75 (237)
T d2zcta1           6 RFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVF   75 (237)
T ss_dssp             BCCCEEEEETTEEEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred             CCCCeEEEcCCCCEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHH
Confidence            44556 778888855555   38999999999 8999999999999999999999988  899999999743

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=2.4e-07  Score=69.93  Aligned_cols=80  Identities=13%  Similarity=0.137  Sum_probs=53.5

Q ss_pred             CCCcceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC---CCCHHHHHhhhccCCceeec
Q 018726          151 RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DRDHKEFDLNHSIMPWLAIP  227 (351)
Q Consensus       151 ~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~~~~~~~~~~~~~~~~~~~  227 (351)
                      ++..+++.---+++.+||.|+++||..|..  |.+.++++++.+  ..+..+..|.+   |.+.                
T Consensus         9 L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~--~~~~~~~~V~~~~vd~~~----------------   68 (122)
T d1g7ea_           9 LDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSAS--SDDLLVAEVGISDYGDKL----------------   68 (122)
T ss_dssp             CSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGG--CSSEEEEEEESCCTTSCH----------------
T ss_pred             CCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHH--HHHHhhhccceeeccccc----------------
Confidence            344444322235789999999999988764  788899998875  23333323433   3332                


Q ss_pred             cCchhhHHHHHHcC--cCceeeEEEECCCCc
Q 018726          228 YEDRARQDLCRIFN--IKGIPALVLIGPDGK  256 (351)
Q Consensus       228 ~~~d~~~~~~~~~~--i~~~P~~~lid~~G~  256 (351)
                           +..++.+|+  |.++||++++ ++|+
T Consensus        69 -----n~~l~~~~~~~I~~yPTi~~f-~~G~   93 (122)
T d1g7ea_          69 -----NMELSEKYKLDKESYPVFYLF-RDGD   93 (122)
T ss_dssp             -----HHHHHHHHTCSSSSCEEEEEE-ESSC
T ss_pred             -----cHHHHHhhcccccCCCeEEEE-ecCc
Confidence                 567888765  7799999999 6664

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.9e-07  Score=73.50  Aligned_cols=60  Identities=28%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             eeCCCCc-ccccCCCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        28 l~~~~g~-~~~~~~~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +.+.+|+ ++++++.||+++|.|| +.||+.|...+..+.++++++++.|  ++++.|+.|...
T Consensus        19 ~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~   80 (197)
T d1qmva_          19 VVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQF   80 (197)
T ss_dssp             EETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH
T ss_pred             eeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHH
Confidence            3467777 9999999999999999 8999999999999999999999988  899999999643

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.7e-08  Score=84.39  Aligned_cols=70  Identities=16%  Similarity=0.153  Sum_probs=49.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec--ChHHHHHHhh
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF--DETLHKKLRI  116 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  116 (351)
                      ++.+|+|.||++||++|+.+.|.|.+|+.+|..      +.|+.++.+...+...+....+|++.+  +|.....+.+
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~------vkF~ki~~~~~~~~~~~~i~~lPtl~~yk~G~~v~~~vg  190 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM------VKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFIS  190 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT------SEEEEEEHHHHTCSTTSCGGGCSEEEEEETTEEEEEETT
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc------ceEEEEccccchhHHhCCCCCCCeEEEEECCEEEEEEEC
Confidence            466899999999999999999999999998754      344555543332223345455566665  8876666655

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.9e-07  Score=71.03  Aligned_cols=69  Identities=10%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~  106 (351)
                      ...+..++|+++|+|+++||++|+.|...+   .++.+.++++   +.++.++.+.++. .+.+.+++..+|++.+
T Consensus        35 ~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~  107 (147)
T d2dlxa1          35 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (147)
T ss_dssp             HHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             HHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhhhhhhhheecCceeEEEE
Confidence            334445799999999999999999997755   5555555554   4444444444332 4777788888898887

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.8e-07  Score=74.38  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             cCcce-eeCCCCcccccCCCC-CeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSRQGKVPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~~g~~~~~~~~g-k~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..++| |.+.+|+++++++.| |+++|.|| +.||+.|...++.+++.++++.+.|  ++++.||+|...
T Consensus         6 ~APdF~l~~~~G~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~   73 (220)
T d1prxa_           6 VAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVE   73 (220)
T ss_dssp             BCCCCEEEETTEEEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHH
T ss_pred             CCCCcEeecCCCCEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeecccccccc
Confidence            45566 788888899999876 88999999 5899999999999999999999988  899999999743

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=2e-07  Score=67.73  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=44.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeecChHH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPFDETL  110 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~~~~~  110 (351)
                      ..-++++.|+++||++|+++.+.++++...+       ....+.+|.+.. .+.+.+... +|++.++|+.
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~-------~~~~v~vd~~~~~~l~~~y~~~-VPvl~idg~~   76 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRF-------ILQEVDITLPENSTWYERYKFD-IPVFHLNGQF   76 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSS-------EEEEEETTSSTTHHHHHHSSSS-CSEEEESSSE
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhc-------ceEEEecccccCHHHHHHhccc-CCceeecCce
Confidence            4567899999999999999999998875543       445566665443 355555544 7888777754

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=1.3e-06  Score=68.85  Aligned_cols=63  Identities=25%  Similarity=0.397  Sum_probs=48.3

Q ss_pred             ce-eeCCCCc-ccccCCCCCeEEEEEeCCCChh-hhhhhHHHHHHHHHHhhc-CCcEEEEEEEecCC
Q 018726           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDHD   88 (351)
Q Consensus        26 ~~-l~~~~g~-~~~~~~~gk~v~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~-~~~~~iv~i~~d~~   88 (351)
                      +| |.+.+|+ +++++++||++||.||.+||+. |..+...+..+.+.+... ...+.+..+..+..
T Consensus         8 dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (169)
T d2b7ka1           8 PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA   74 (169)
T ss_dssp             CCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred             CeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccc
Confidence            45 9999999 9999999999999999999975 777777777777666443 22355666666543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.5e-05  Score=61.08  Aligned_cols=88  Identities=19%  Similarity=0.233  Sum_probs=54.5

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC--CC-CH----------------HHHHhhhccCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST--DR-DH----------------KEFDLNHSIMP  222 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~--d~-~~----------------~~~~~~~~~~~  222 (351)
                      .+|.+++.|+...||+|+++.|.+.++.+       .++.++.+..  .. ..                ..+........
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~-------~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   97 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNA-------LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS   97 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhc-------cCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccc
Confidence            46899999999999999999999988754       3344444443  21 11                11111111111


Q ss_pred             c--eeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          223 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       223 ~--~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      .  .........+..+++.+||.|+|++|+  .||+++
T Consensus        98 ~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v  133 (156)
T d1eeja1          98 VAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV  133 (156)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred             cchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence            1  111222345678999999999999765  467665

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.3e-05  Score=62.22  Aligned_cols=93  Identities=11%  Similarity=0.099  Sum_probs=60.8

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC---C-------------HHHHHhhhccC----
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---D-------------HKEFDLNHSIM----  221 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~-------------~~~~~~~~~~~----  221 (351)
                      ..+.+|+.|+.+.||+|+++.+.+.++.+.      .++.++++.+.-   +             ...+..+....    
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~------~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~  108 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKL  108 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhc------cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcc
Confidence            457899999999999999999998887653      457777777631   1             11122222111    


Q ss_pred             Cceeec-cC------chhhHHHHHHcCcCceeeEEEECCCCceEec
Q 018726          222 PWLAIP-YE------DRARQDLCRIFNIKGIPALVLIGPDGKTIST  260 (351)
Q Consensus       222 ~~~~~~-~~------~d~~~~~~~~~~i~~~P~~~lid~~G~v~~~  260 (351)
                      +..... ..      .+.+..+++.+|+.++|++|+.|++|++...
T Consensus       109 ~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~  154 (169)
T d1v58a1         109 KLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQA  154 (169)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEe
Confidence            101111 11      2345678889999999999999999977544

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.91  E-value=1.3e-05  Score=66.22  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=54.4

Q ss_pred             cCcce-eeCC--CCcccccCC-CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           23 EGVEF-LLSR--QGKVPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        23 ~~~~~-l~~~--~g~~~~~~~-~gk~v~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      ..++| +...  +|+++++++ .||+++|.|| +.||+.|...+..+++.++++.+.|  ++++.||.|...
T Consensus         7 ~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~~   76 (219)
T d1xcca_           7 TFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKE   76 (219)
T ss_dssp             BCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH
T ss_pred             CCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccHh
Confidence            44555 5444  455888885 8999999999 6999999999999999999999988  899999999743

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.85  E-value=0.00012  Score=57.73  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             ceeecccCCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          155 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       155 ~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      .+.+-+-.+++.|+.|+...||+|+++.+.+.++.+++.+  ...+.++.+..
T Consensus        16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~--~~~~~~~~~~~   66 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK--SGKVERIIKLF   66 (172)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH--TTSEEEEEEEC
T ss_pred             CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcc--ccceeeeeccc
Confidence            3445555568899999999999999999999999998874  34566666665

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=7.3e-05  Score=57.91  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCC-CHH----------------HHHhhhcc--CC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHK----------------EFDLNHSI--MP  222 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~----------------~~~~~~~~--~~  222 (351)
                      .+|.+++.|+...||+|+++.+.+.++.+..     ..+.++...... ...                .+......  ..
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~   99 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG-----ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK   99 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT-----EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC-----ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhcccc
Confidence            4689999999999999999999998886532     223333333321 111                01000110  00


Q ss_pred             ceeeccCchhhHHHHHHcCcCceeeEEEECCCCceE
Q 018726          223 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  258 (351)
Q Consensus       223 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~v~  258 (351)
                      .....-..+.+..+++.+||.|+||+++  .||+++
T Consensus       100 ~~~~~~~i~~~~~la~~lGv~GTPt~~~--~nG~~i  133 (150)
T d1t3ba1         100 EVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI  133 (150)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred             chhhhhHHHHHHHHHHhcCcCCCCEEEE--cCCcEe
Confidence            1111112335678899999999998887  457643

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.74  E-value=9.3e-05  Score=58.61  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             ceeeccc-CCcEEEEEE-ecCCChhhHH-hHHHHHHHHHHh-hcccCCce-EEEEEeCCCCHHHHHhhhccCCceeeccC
Q 018726          155 KITVSEL-AGKTIGLYF-GAHWCPPCRS-FTSQLIEVYNEL-KTTANHCF-EVVLVSTDRDHKEFDLNHSIMPWLAIPYE  229 (351)
Q Consensus       155 ~~~l~~~-~gk~vll~F-~a~~C~~C~~-~~~~l~~l~~~~-~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  229 (351)
                      +++++++ +||.|+|++ -+..-|.|.. .+|.+.+.+++| ++   .++ +|+.|++++ .-...++.+..+...+.+.
T Consensus        33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~---~gvd~I~~iSvnD-~fv~~aW~~~~~~~~I~~l  108 (179)
T d1xiya1          33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE---NNFDDIYCITNND-IYVLKSWFKSMDIKKIKYI  108 (179)
T ss_dssp             EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---SCCSEEEEEESSC-HHHHHHHHHHTTCCSSEEE
T ss_pred             EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHh---cCCceEEEEecCC-HHHHHHHHhhcCcceEEEe
Confidence            4566665 787666655 5667788955 699999999998 43   444 799999984 4444444444444456778


Q ss_pred             chhhHHHHHHcCcC-----------ceeeEEEECCCCceEecc
Q 018726          230 DRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  261 (351)
Q Consensus       230 ~d~~~~~~~~~~i~-----------~~P~~~lid~~G~v~~~~  261 (351)
                      .|.+.++++.||+.           .....++++ +|+|.+..
T Consensus       109 sD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~  150 (179)
T d1xiya1         109 SDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  150 (179)
T ss_dssp             ECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             eCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence            88889999999862           335678887 89988763

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.56  E-value=0.00011  Score=58.31  Aligned_cols=32  Identities=19%  Similarity=0.516  Sum_probs=29.1

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhh
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK  193 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~  193 (351)
                      .++++|+.|+...||+|+.+.+.+.++.+++.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~   48 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP   48 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcc
Confidence            46889999999999999999999999998886

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00038  Score=55.52  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  207 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  207 (351)
                      .++++|+.|+.-.||+|+.+.+.+..+.+.... ....+.++...+
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~   61 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKK-LPEGVKMTKYHV   61 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTT-SCTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhc-cCCceEEEEEec
Confidence            467889999999999999999988666554432 224566666655

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00015  Score=47.84  Aligned_cols=31  Identities=23%  Similarity=0.683  Sum_probs=27.8

Q ss_pred             ceeeccccCC-CceEEEEcCCC----CCCCCccccC
Q 018726          315 AYVCDCCKMR-GRFWAFSCDVC----NYDLHPKCVE  345 (351)
Q Consensus       315 ~~~Cd~C~~~-~~~~~~~c~~~----~~~~~~~c~~  345 (351)
                      .+.||.|++. ..|-+|+|.+|    ||||...|-.
T Consensus        14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~   49 (69)
T d2fc7a1          14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSD   49 (69)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTT
T ss_pred             CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhc
Confidence            4789999996 79999999999    7999999954

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.002  Score=49.99  Aligned_cols=64  Identities=25%  Similarity=0.387  Sum_probs=48.7

Q ss_pred             cce-eeC-CCCc-ccccC-CCCCeEEEEEeC-CCChhh-hhhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           25 VEF-LLS-RQGK-VPLSS-CGGKTICLFFSA-NWCRPC-KTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        25 ~~~-l~~-~~g~-~~~~~-~~gk~v~v~F~a-~wC~~C-~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      +++ |.+ .+|+ +++++ +.||.|+|.||. .|++.| ....+.+.+.++.+++.|. ..++.+++|...
T Consensus        10 P~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~-~~i~~~s~~~~~   79 (161)
T d1hd2a_          10 PAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV-QVVACLSVNDAF   79 (161)
T ss_dssp             CCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTC-CEEEEEESSCHH
T ss_pred             CCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCC-eEEEEEecCchh
Confidence            344 654 4477 99988 589999999995 899999 5688899999999888872 245567777544

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00015  Score=44.73  Aligned_cols=29  Identities=38%  Similarity=0.871  Sum_probs=24.9

Q ss_pred             ceeeccccCCCceEEEEcCCCC-CCCCcccc
Q 018726          315 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCV  344 (351)
Q Consensus       315 ~~~Cd~C~~~~~~~~~~c~~~~-~~~~~~c~  344 (351)
                      -|.||.|++.. |-+|+|.+|. |||...|-
T Consensus         6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~   35 (52)
T d1tota1           6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCY   35 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHH
T ss_pred             EEECcCCCCcC-CCceECCCCCCcccHHHHh
Confidence            37899999864 6799999999 99999993

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00075  Score=41.03  Aligned_cols=41  Identities=22%  Similarity=0.552  Sum_probs=31.2

Q ss_pred             cceeeeecCCceeeccccCCCceEEEEcCCCCCCCCccccCc
Q 018726          305 EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEG  346 (351)
Q Consensus       305 ~~~l~l~~~~~~~Cd~C~~~~~~~~~~c~~~~~~~~~~c~~~  346 (351)
                      +|.+......+.+|+.|++... +.|+|++|+|-.|..|+..
T Consensus         4 ~H~F~~~~~~~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_           4 THRFSTKSWLSQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCCEEEECCSSCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             ccEEeecCcCCCCchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            4555443344456999999764 6799999999999999863

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0017  Score=39.99  Aligned_cols=43  Identities=26%  Similarity=0.619  Sum_probs=31.9

Q ss_pred             cceeeee-cCCceeeccccCCCceEEEEcCCCCCCCCccccCccc
Q 018726          305 EHELKLD-MAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN  348 (351)
Q Consensus       305 ~~~l~l~-~~~~~~Cd~C~~~~~~~~~~c~~~~~~~~~~c~~~~~  348 (351)
                      +|.+... ...+..|+.|++... ..|+|.+|++-.|..|+....
T Consensus         3 ~H~F~~~~f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v~   46 (52)
T d1faqa_           3 THNFARKTFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVP   46 (52)
T ss_dssp             CCCCEEECCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSSS
T ss_pred             ceEEEEeeCCCCcCCccCCCccc-cCCCcCCCCChhhhhhhcccc
Confidence            3444443 345679999999643 469999999999999987543

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.00043  Score=47.47  Aligned_cols=28  Identities=29%  Similarity=0.649  Sum_probs=25.5

Q ss_pred             eeeccccCC-CceEEEEcCCCC-CCCCccc
Q 018726          316 YVCDCCKMR-GRFWAFSCDVCN-YDLHPKC  343 (351)
Q Consensus       316 ~~Cd~C~~~-~~~~~~~c~~~~-~~~~~~c  343 (351)
                      ..||.|++. ..|-+|+|..|. |||...|
T Consensus        25 v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C   54 (85)
T d2dipa1          25 IPCNNCKQFPIEGKCYKCTECIEYHLCQEC   54 (85)
T ss_dssp             CCCSSSCCSSCCSCEEEESSSSSCEEEHHH
T ss_pred             eECCCCCCCCcCcceEEcCCCCCccchHHH
Confidence            489999884 899999999997 9999999

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=96.15  E-value=0.02  Score=37.90  Aligned_cols=69  Identities=20%  Similarity=0.375  Sum_probs=44.4

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      |..|..++|+.|......|.    +.     ..+.+..|+++.+                       .++.++|+.. +|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~----~~-----~~~~~~~vdI~~d-----------------------~~l~~~y~~~-IP   48 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA----QA-----RAGAFFSVFIDDD-----------------------AALESAYGLR-VP   48 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HT-----TCCCEEEEECTTC-----------------------HHHHHHHTTT-CS
T ss_pred             EEEECCCCccHHHHHHHHHH----hc-----cCCcEEEEEccCC-----------------------HHHHHHhCCe-ee
Confidence            45678999999986544332    11     2356777777765                       5788899966 79


Q ss_pred             eEEEECCCCceEeccccceeeccCCcCCCCchhhHHHH
Q 018726          247 ALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEI  284 (351)
Q Consensus       247 ~~~lid~~G~v~~~~~~~~~~~~g~~~~p~~~~~~~~l  284 (351)
                      .+. + .+|....              +||.++++.++
T Consensus        49 Vl~-~-~~~~~l~--------------w~fd~~~l~~~   70 (75)
T d1ttza_          49 VLR-D-PMGRELD--------------WPFDAPRLRAW   70 (75)
T ss_dssp             EEE-C-TTCCEEE--------------SCCCHHHHHHH
T ss_pred             EEE-E-CCeeEEc--------------CccCHHHHHHH
Confidence            543 4 3455443              36777766655

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.96  E-value=0.019  Score=41.73  Aligned_cols=71  Identities=20%  Similarity=0.341  Sum_probs=50.5

Q ss_pred             cccCCcEEEEEEec-CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHH
Q 018726          159 SELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  237 (351)
Q Consensus       159 ~~~~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  237 (351)
                      +.+++.+.++.|.+ ..|+.|......++++++-     .+++.+.....+...                     ..+++
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-----Sdki~~~~~~~~~~e---------------------~~~~~   71 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-----TDKLSYEIVDFDTPE---------------------GKELA   71 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-----CTTEEEEEEETTSHH---------------------HHHHH
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-----CCCeEEEEeccCcch---------------------hhhHH
Confidence            34455566666665 5799999888777777542     256777766666543                     57899


Q ss_pred             HHcCcCceeeEEEECCCCc
Q 018726          238 RIFNIKGIPALVLIGPDGK  256 (351)
Q Consensus       238 ~~~~i~~~P~~~lid~~G~  256 (351)
                      +.|++...|++.+.+ +|+
T Consensus        72 ~~~~ver~Ps~~i~~-~g~   89 (119)
T d1a8la1          72 KRYRIDRAPATTITQ-DGK   89 (119)
T ss_dssp             HHTTCCSSSEEEEEE-TTB
T ss_pred             HhhccccCceEEEec-CCc
Confidence            999999999999885 443

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=95.95  E-value=0.011  Score=39.09  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=36.7

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|..+||++|......|.+          .++.+..+.++.+.+                    .....+.+|...+|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~----------~~i~~~~~~i~~~~~--------------------~~~~~~~~g~~tvP   52 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR----------AGLAYNTVDISLDDE--------------------ARDYVMALGYVQAP   52 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----------TTCCCEEEETTTCHH--------------------HHHHHHHTTCBCCC
T ss_pred             EEEEeCCCChhHHHHHHHHHH----------cCCceEEEEccCCHH--------------------HHHHHHHhCCCCcC
Confidence            567889999999987765533          344566667776531                    23445667889999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      .+++
T Consensus        53 ~i~i   56 (74)
T d1r7ha_          53 VVEV   56 (74)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.94  E-value=0.022  Score=37.75  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             EEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeE
Q 018726          169 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL  248 (351)
Q Consensus       169 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~  248 (351)
                      ..+++.|+.|.+.....++..+++.    -+.++..|.   +                      -.++. .||+.++|.+
T Consensus         5 kVlg~gC~~C~~~~~~v~~a~~e~g----i~a~v~kv~---d----------------------~~ei~-~ygVmstPal   54 (77)
T d1iloa_           5 QIYGTGCANCQMLEKNAREAVKELG----IDAEFEKIK---E----------------------MDQIL-EAGLTALPGL   54 (77)
T ss_dssp             EEECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEEC---S----------------------HHHHH-HHTCSSSSCE
T ss_pred             EEeCCCCccHHHHHHHHHHHHHHcC----CceEEEEeC---C----------------------HHHHH-HcCCcCCCEE
Confidence            3458999999999999888888765    566666662   2                      25665 5999999998


Q ss_pred             EEECCCCceEec
Q 018726          249 VLIGPDGKTIST  260 (351)
Q Consensus       249 ~lid~~G~v~~~  260 (351)
                      ++   ||+++..
T Consensus        55 vI---dg~vv~~   63 (77)
T d1iloa_          55 AV---DGELKIM   63 (77)
T ss_dssp             EE---TTEEEEC
T ss_pred             EE---CCEEEEE
Confidence            87   7888866

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=95.72  E-value=0.0032  Score=40.86  Aligned_cols=43  Identities=23%  Similarity=0.648  Sum_probs=33.3

Q ss_pred             cceeeee-cCCceeeccccCCCceE---EEEcCCCCCCCCccccCcc
Q 018726          305 EHELKLD-MAKAYVCDCCKMRGRFW---AFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       305 ~~~l~l~-~~~~~~Cd~C~~~~~~~---~~~c~~~~~~~~~~c~~~~  347 (351)
                      +|.+... ...+..|+.|.+...|+   .|+|..|++-.|..|+...
T Consensus         8 ~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v   54 (66)
T d1tbna_           8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV   54 (66)
T ss_dssp             SCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred             CCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence            5666654 34566899999975543   5999999999999998754

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.018  Score=38.22  Aligned_cols=54  Identities=13%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +..|..+||++|.+....|.+          .++.+..++++.+.+                    ..+..+..|...+|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~----------~~i~y~~~~i~~~~~--------------------~~~~~~~~g~~tvP   52 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN----------RGFDFEMINVDRVPE--------------------AAEALRAQGFRQLP   52 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----------TTCCCEEEETTTCHH--------------------HHHHHHHTTCCSSC
T ss_pred             EEEEeCCCCccHHHHHHHHHh----------cCceeEEEeecCCHH--------------------HHHHHHhcCCCCCC
Confidence            467889999999987666533          334555666765531                    12334556889999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      .+++
T Consensus        53 ~i~i   56 (76)
T d1h75a_          53 VVIA   56 (76)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9765

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0097  Score=37.89  Aligned_cols=43  Identities=19%  Similarity=0.502  Sum_probs=31.4

Q ss_pred             cceeeee-cCCceeeccccCCCc---eEEEEcCCCCCCCCccccCcc
Q 018726          305 EHELKLD-MAKAYVCDCCKMRGR---FWAFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       305 ~~~l~l~-~~~~~~Cd~C~~~~~---~~~~~c~~~~~~~~~~c~~~~  347 (351)
                      +|.+... ...+-.|+.|.+...   -..|+|.+|++-.|..|....
T Consensus         4 ~H~F~~~~~~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v   50 (62)
T d1xa6a3           4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHV   50 (62)
T ss_dssp             CCCCCEECCSSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTS
T ss_pred             CCEEEEeeCCCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhC
Confidence            3444433 235568999999643   357999999999999997643

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=94.93  E-value=0.029  Score=43.08  Aligned_cols=57  Identities=25%  Similarity=0.450  Sum_probs=45.0

Q ss_pred             CCc-ccccC-CCCCeEEEEEeC-CCChhhh-hhhHHHHHHHHHHhhcCCcEEEEEEEecCCh
Q 018726           32 QGK-VPLSS-CGGKTICLFFSA-NWCRPCK-TFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (351)
Q Consensus        32 ~g~-~~~~~-~~gk~v~v~F~a-~wC~~C~-~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~   89 (351)
                      .++ +++++ ++||.|+|.||. .|.+.|. +..|.+....+.++.+|. .+++.+++|...
T Consensus        23 ~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~-~~v~~isvd~~~   83 (162)
T d1tp9a1          23 QLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGV-TEILCISVNDPF   83 (162)
T ss_dssp             CEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTC-CCEEEEESSCHH
T ss_pred             CceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCC-cceeeeeccchh
Confidence            345 88887 599999999995 8999995 678888888888877752 468889998654

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=94.90  E-value=0.024  Score=38.08  Aligned_cols=55  Identities=13%  Similarity=0.258  Sum_probs=35.2

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      +..|..+|||+|.+....|.+    .      ++.+..++++.+...                   ...+.+..|...+|
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~----~------~i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP   53 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS----K------GVSFQELPIDGNAAK-------------------REEMIKRSGRTTVP   53 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----H------TCCCEEEECTTCSHH-------------------HHHHHHHHSSCCSC
T ss_pred             EEEEeCCCCHhHHHHHHHHHH----c------CCCeEEEeccchHHH-------------------HHHHHHHhCCCCCC
Confidence            457888999999987655533    2      234455566544211                   23556667888999


Q ss_pred             eEEE
Q 018726          247 ALVL  250 (351)
Q Consensus       247 ~~~l  250 (351)
                      .+++
T Consensus        54 ~i~i   57 (82)
T d1fova_          54 QIFI   57 (82)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8764

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.57  E-value=0.017  Score=41.07  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=39.2

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|..+|||+|......|.++.-.     ...+.+.-+..+.+...+.                  ..+.+..|...+|
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~-----~~~~~~~e~d~~~d~~~~~------------------~~l~~~~g~~tvP   70 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFK-----EGLLEFVDITATSDTNEIQ------------------DYLQQLTGARTVP   70 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBC-----TTSEEEEEGGGSTTHHHHH------------------HHHHHHHSCCCSC
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCc-----cceeeeeecccccccHHHH------------------HHHhhccCCCcCc
Confidence            5689999999999876666443221     2345555555554432211                  2334455778899


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      .+++   +|+.+
T Consensus        71 qIfi---~g~~I   79 (105)
T d1ktea_          71 RVFI---GKECI   79 (105)
T ss_dssp             EEEE---TTEEE
T ss_pred             EEEE---CCEEE
Confidence            8865   45543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.56  E-value=0.05  Score=41.73  Aligned_cols=52  Identities=17%  Similarity=0.305  Sum_probs=41.2

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      +.+.....++.++.|+-..||+|+++.+.+.++.+++...+ .+.++.+...-
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   68 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFDK   68 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECCC
T ss_pred             CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccccc
Confidence            55556677888999999999999999999999999987764 25555555543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=94.31  E-value=0.029  Score=36.80  Aligned_cols=54  Identities=15%  Similarity=0.248  Sum_probs=34.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh---cCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~---~~~~~~~~~~~~  109 (351)
                      ++.|..+||++|.+....|.+       .|  +.+..++++.+.+. .+.++   ...+|.+..+++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~-------~~--i~~~~~~i~~~~~~-~~~~~~~g~~tvP~i~i~g~   59 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR-------AG--LAYNTVDISLDDEA-RDYVMALGYVQAPVVEVDGE   59 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH-HHHHHHTTCBCCCEEEETTE
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------cC--CceEEEEccCCHHH-HHHHHHhCCCCcCEEEECCE
Confidence            467888999999998876654       34  56777788776543 23333   333555555664

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.27  E-value=0.047  Score=38.58  Aligned_cols=63  Identities=22%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHh----cCCceeeecChH
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK----CMPWLAVPFDET  109 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~----~~~~~~~~~~~~  109 (351)
                      ++|  ++.|..+|||+|.+....|.++    .-....+.+.-++.+.+.....+.+.    ....|.+..+|+
T Consensus        11 ~~~--Vviysk~~Cp~C~~ak~ll~~~----~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g~   77 (105)
T d1ktea_          11 PGK--VVVFIKPTCPFCRKTQELLSQL----PFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKE   77 (105)
T ss_dssp             TTC--EEEEECSSCHHHHHHHHHHHHS----CBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTE
T ss_pred             cCC--EEEEECCCCchHHHHHHHHHHh----CCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECCE
Confidence            345  5679999999999988777653    22221133433344444444444332    222456655654

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=93.98  E-value=0.071  Score=40.84  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=34.8

Q ss_pred             ccccCC-CCCeEEEEEeC-CCChhhhhhhHHHHHH-HHHHhhcCCcEEEEEEEecC
Q 018726           35 VPLSSC-GGKTICLFFSA-NWCRPCKTFTPQLVQL-YDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        35 ~~~~~~-~gk~v~v~F~a-~wC~~C~~~~p~~~~l-~~~~~~~~~~~~iv~i~~d~   87 (351)
                      ++++++ +||.|+|.||. .+.+-|......+... ++.+...+. -.++.++.+.
T Consensus        23 ~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~-~~vv~~~s~d   77 (163)
T d1nm3a2          23 VTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV-DDILVVSVND   77 (163)
T ss_dssp             EEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTC-CEEEEEESSC
T ss_pred             EEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcc-cceeeeecCC
Confidence            888885 99999999987 8889999876654444 333444431 2455555554

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=93.97  E-value=0.035  Score=36.41  Aligned_cols=55  Identities=18%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh--hHHHHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~~~~~~~~~~~~~~~~~  109 (351)
                      ++.|+.++|+.|.+....|.+       .|  +.+..++++.+..  ...+......+|.+..+|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~-------~~--i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHD-------KG--LSFEEIILGHDATIVSVRAVSGRTTVPQVFIGGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEETTTTCCHHHHHHHTCCSSSCEEEETTE
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCeEEEEccCcHHHHHHHHHhCCccCCEEEECCE
Confidence            467889999999998877664       23  4455666665432  2333333444566655654

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=93.90  E-value=0.032  Score=36.63  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=36.1

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCcee
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  246 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  246 (351)
                      ++.|+.++||+|.+....|.+.    .      +.+..+.++.+..                    ...+.+..+...+|
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~----~------i~~~~~~v~~~~~--------------------~~~~~~~~~~~tvP   56 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK----G------LSFEEIILGHDAT--------------------IVSVRAVSGRTTVP   56 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----T------CCCEEEETTTTCC--------------------HHHHHHHTCCSSSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----C------CCeEEEEccCcHH--------------------HHHHHHHhCCccCC
Confidence            4678899999999887666543    2      2333444443210                    23455566788899


Q ss_pred             eEEEECCCCceE
Q 018726          247 ALVLIGPDGKTI  258 (351)
Q Consensus       247 ~~~lid~~G~v~  258 (351)
                      .+++   +|+.+
T Consensus        57 ~i~i---~g~~I   65 (74)
T d1nm3a1          57 QVFI---GGKHI   65 (74)
T ss_dssp             EEEE---TTEEE
T ss_pred             EEEE---CCEEE
Confidence            8654   45543

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.04  Score=36.36  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=34.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHH--HhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH--FKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~--~~~~~~~~~~~~~~  109 (351)
                      ++.|..+||++|.+....|.+       .|  +.+..++++.+.+.....  ......|.+..+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~-------~~--i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i~~~   59 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDL   59 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHHHHHHHHTTCCSSCEEEETTE
T ss_pred             EEEEeCCCCccHHHHHHHHHh-------cC--ceeEEEeecCCHHHHHHHHhcCCCCCCEEEECCE
Confidence            456888999999998877654       34  556777787765432221  23333566655553

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=93.89  E-value=0.03  Score=43.34  Aligned_cols=43  Identities=21%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      .+++.+|.|+..-||+|+.+.+.+.++.+++.+.   ..++...+.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~~   59 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHVS   59 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEECS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc---cceeEEecc
Confidence            6789999999999999999999999999987655   355555443

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=93.83  E-value=0.032  Score=37.41  Aligned_cols=55  Identities=13%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH---HHHhcCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE---EHFKCMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~---~~~~~~~~~~~~~~~~  109 (351)
                      +..|..+||++|.+....+.+       .|  +.+..++++.+.....   +......+|.+..+++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~-------~~--i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS-------KG--VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTE
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------cC--CCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCE
Confidence            456788999999988766654       23  5577778876654333   3333333466655654

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.021  Score=38.76  Aligned_cols=60  Identities=8%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh---hHHHHHh--cCCceeeecChH
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN---GFEEHFK--CMPWLAVPFDET  109 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~---~~~~~~~--~~~~~~~~~~~~  109 (351)
                      ++-|..+||++|.+....+.++.-++++    +.+..++++.+..   .+.+...  ....|.+..+|+
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~   67 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQ   67 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCE
Confidence            4678899999999999999998877654    5676666654322   2333222  123577766664

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.43  E-value=0.11  Score=34.20  Aligned_cols=57  Identities=12%  Similarity=0.155  Sum_probs=41.6

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecChHH
Q 018726           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL  110 (351)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
                      |..+.+.|+.|.++....+++++++.   ...++.-+  . |...+. .++.+.+|.+..||+.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g---i~a~v~kv--~-d~~ei~-~ygVmstPalvIdg~v   60 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG---IDAEFEKI--K-EMDQIL-EAGLTALPGLAVDGEL   60 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT---CCEEEEEE--C-SHHHHH-HHTCSSSSCEEETTEE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC---CceEEEEe--C-CHHHHH-HcCCcCCCEEEECCEE
Confidence            45568999999999999999888753   22444444  3 444554 4889999999998763

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.041  Score=42.93  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             CCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecC
Q 018726           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (351)
Q Consensus        40 ~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~   87 (351)
                      ..+++.+|.|+...||+|+++.+.+..+.+..+.....+.++...+..
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   63 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF   63 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecCc
Confidence            468889999999999999999998876666544433335666666654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.07  Score=41.11  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             ccccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        35 ~~~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      +....-..+.+++.|+-+-||+|+++.+.++++.+..  +   +.++++.+.
T Consensus        29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~---v~v~~~~~~   75 (169)
T d1v58a1          29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG--K---VQLRTLLVG   75 (169)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT--S---EEEEEEECC
T ss_pred             ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc--c---eeEEEEecc
Confidence            3334446678899999999999999999998876542  2   677777665

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.054  Score=36.54  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             EEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018726          167 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       167 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      ++.|..++||+|.+....|.++..+++     ++.+..++++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~-----~i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-----SCEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC-----CceEEEEecC
Confidence            568899999999999888888877774     3556555544

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.015  Score=35.16  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=28.1

Q ss_pred             CCceeeccccCCCce---EEEEcCCCCCCCCccccCcc
Q 018726          313 AKAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGI  347 (351)
Q Consensus       313 ~~~~~Cd~C~~~~~~---~~~~c~~~~~~~~~~c~~~~  347 (351)
                      ..+-.|+.|++...|   =.|+|.+|++-.|..|....
T Consensus         9 ~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v   46 (50)
T d1ptqa_           9 MSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV   46 (50)
T ss_dssp             SSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred             CCCcCCcccCCcccCcccCcEECCCCCCeeChhHcccc
Confidence            345689999996544   26999999999999997643

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.023  Score=38.50  Aligned_cols=33  Identities=21%  Similarity=0.464  Sum_probs=26.8

Q ss_pred             CceeeccccCCCce----EEEEcCCCCCCCCccccCc
Q 018726          314 KAYVCDCCKMRGRF----WAFSCDVCNYDLHPKCVEG  346 (351)
Q Consensus       314 ~~~~Cd~C~~~~~~----~~~~c~~~~~~~~~~c~~~  346 (351)
                      .+-.|+.|++...+    ..|+|..|++-.|..|...
T Consensus        37 ~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~   73 (84)
T d1r79a_          37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES   73 (84)
T ss_dssp             TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred             CCCCCcccCcccCCccccCcEecCcCCchhhhhhcCC
Confidence            45689999997433    3699999999999999753

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=92.64  E-value=0.32  Score=35.40  Aligned_cols=71  Identities=10%  Similarity=0.123  Sum_probs=50.0

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .+++.++.|+... .........+.+++++|+    .++.++.++.+..                       ....+.||
T Consensus        22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~----~ki~Fv~vd~~~~-----------------------~~~l~~~g   73 (133)
T d2djka1          22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQR----GVINFGTIDAKAF-----------------------GAHAGNLN   73 (133)
T ss_dssp             TTSCEEEEECSCS-SSHHHHHHHHHHHHHSST----TTSEEEEECTTTT-----------------------GGGTTTTT
T ss_pred             CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhc----CceEEEEEeHHHh-----------------------HHHHHHhc
Confidence            3678888887764 346777888999999887    5677777754432                       34566678


Q ss_pred             c--CceeeEEEECCCCceEec
Q 018726          242 I--KGIPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i--~~~P~~~lid~~G~v~~~  260 (351)
                      +  ...|.+++++.++...+.
T Consensus        74 l~~~~~P~~~i~~~~~~~~~~   94 (133)
T d2djka1          74 LKTDKFPAFAIQEVAKNQKFP   94 (133)
T ss_dssp             CCSSSSSEEEEECTTTCCBCC
T ss_pred             CCcccCCcEEEEEcCCCceec
Confidence            7  458999999877665443

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.60  E-value=0.4  Score=38.53  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=45.8

Q ss_pred             cEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCc---eeeccCchhhHHHHHHc
Q 018726          164 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW---LAIPYEDRARQDLCRIF  240 (351)
Q Consensus       164 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~  240 (351)
                      +.||=.|.+.||..|..-...|.+|.+.      +++..+.+.+|-        +...+|   ++.+....+.+...+.+
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~------~~Vi~La~HVdY--------Wd~lGw~D~fa~~~~t~RQ~~Y~~~~   71 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK------GDVVGLSYHVDY--------WNYLGWTDSLASKENTERQYGYMRAL   71 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH------TSSEEEEEECST--------TCSSSSCCTTCCHHHHHHHHHHHHHT
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC------CCEEEEEecccc--------ccccCCCCCCCCchhhHHHHHHHHhc
Confidence            4677789999999999999999888652      678888888872        111222   12222223334566777


Q ss_pred             CcCceee
Q 018726          241 NIKGIPA  247 (351)
Q Consensus       241 ~i~~~P~  247 (351)
                      +...+||
T Consensus        72 g~~~vyT   78 (225)
T d2axoa1          72 GRNGVYT   78 (225)
T ss_dssp             TCSCCCS
T ss_pred             CCCCCCc
Confidence            8877654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.03  Score=44.53  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=32.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEec
Q 018726           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (351)
Q Consensus        41 ~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d   86 (351)
                      .+++.++.|+..+||+|.++.|.+..+.+-.+..+..+.++...+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            5788999999999999999999876443322222222566666654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.074  Score=40.35  Aligned_cols=43  Identities=19%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             ccCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        37 ~~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      +....+|.+++.|+-+-||+|+++.|.+.++.+.    +  +.++++..
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~--~~~~~~~~   63 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAF   63 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEEC
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----C--ceEEEEec
Confidence            3444789999999999999999999999987542    2  45655554

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.034  Score=44.21  Aligned_cols=43  Identities=26%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHH---HHHHHhhcccCCceEEEEEeCC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTD  208 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d  208 (351)
                      .+++.|+.|+.-+||+|..+.|.|.   ++.+.++    .++.++.+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~----~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----EGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----TTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcC----CCcEEEEEecC
Confidence            4678899999999999999999775   4444444    55666665543

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.18  E-value=0.16  Score=38.08  Aligned_cols=42  Identities=24%  Similarity=0.464  Sum_probs=32.5

Q ss_pred             cCCCCCeEEEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEe
Q 018726           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (351)
Q Consensus        38 ~~~~gk~v~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~   85 (351)
                      ..-.+|.+++.|+-+-||.|+++.+.+.++.+.    +  ..++++..
T Consensus        22 g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~   63 (150)
T d1t3ba1          22 PAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAF   63 (150)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEEC
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEe
Confidence            344688899999999999999999999887653    2  45555544

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=87.37  E-value=0.68  Score=30.04  Aligned_cols=53  Identities=13%  Similarity=0.080  Sum_probs=34.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHHHHHhcCCceeeecCh
Q 018726           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE  108 (351)
Q Consensus        46 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~  108 (351)
                      +..|..++|+.|......+.+      ..+  +.+..++++.+.+-..++-  ..+|.+..++
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~------~~~--~~~~~vdI~~d~~l~~~y~--~~IPVl~~~~   54 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ------ARA--GAFFSVFIDDDAALESAYG--LRVPVLRDPM   54 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH------TTC--CCEEEEECTTCHHHHHHHT--TTCSEEECTT
T ss_pred             EEEECCCCccHHHHHHHHHHh------ccC--CcEEEEEccCCHHHHHHhC--CeeeEEEECC
Confidence            456889999999876544432      123  5688889988775555553  2256666543

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.74  E-value=1.3  Score=34.01  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             ccccC-CCCCeEEEEEeC-CCChhhhh-hhHHHHHHHHHH-hhcCCcEEEEEEEecCChhhHHHHHhcCCceeeec
Q 018726           35 VPLSS-CGGKTICLFFSA-NWCRPCKT-FTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF  106 (351)
Q Consensus        35 ~~~~~-~~gk~v~v~F~a-~wC~~C~~-~~p~~~~l~~~~-~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (351)
                      +++++ +.||.|+|.+.. ..-|.|.. ..|.+.+-++++ +.+|. -+|+.+++|+.. ...++.+......+.+
T Consensus        34 ~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gv-d~I~~iSvnD~f-v~~aW~~~~~~~~I~~  107 (179)
T d1xiya1          34 IDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF-DDIYCITNNDIY-VLKSWFKSMDIKKIKY  107 (179)
T ss_dssp             EEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC-SEEEEEESSCHH-HHHHHHHHTTCCSSEE
T ss_pred             eeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCC-ceEEEEecCCHH-HHHHHHhhcCcceEEE
Confidence            34444 588887777665 46788955 699999999998 56662 279999998532 3344434344444554

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.92  E-value=0.87  Score=31.86  Aligned_cols=49  Identities=14%  Similarity=0.059  Sum_probs=28.7

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChhhHH---HHHhcCCceeeecChH
Q 018726           52 NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE---EHFKCMPWLAVPFDET  109 (351)
Q Consensus        52 ~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~~~~---~~~~~~~~~~~~~~~~  109 (351)
                      |.|+.|.+....|.+       .+  +.+..++++.+.+...   +.....-.|.+..+|+
T Consensus        28 p~Cp~c~~ak~lL~~-------~~--i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~   79 (109)
T d1wika_          28 AKCGFSKQILEILNS-------TG--VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGD   79 (109)
T ss_dssp             CCSSTHHHHHHHHHH-------TC--SCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSS
T ss_pred             CCChHHHHHHHHHHh-------cC--CCceEEEecccHHHHHHHHHhcCCCCCCeEEECCE
Confidence            789999998876653       23  4566777877654322   2222223455555554

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.82  E-value=0.94  Score=32.48  Aligned_cols=71  Identities=11%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCcEEEEEEecCCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcC
Q 018726          162 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  241 (351)
Q Consensus       162 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  241 (351)
                      .|+++++.|+.+.= .-......+.+++++|+    .++.++.++.+.                       .....+.||
T Consensus        16 ~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fk----gki~Fv~~D~~~-----------------------~~~~l~~fg   67 (125)
T d2b5ea3          16 SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNR----GLMNFVSIDARK-----------------------FGRHAGNLN   67 (125)
T ss_dssp             TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTT----TTCEEEEEEHHH-----------------------HTTHHHHTT
T ss_pred             cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhc----CeeEEEEEchHH-----------------------hHHHHHHcC
Confidence            47888888888642 34567788889999987    567777776542                       245678888


Q ss_pred             cCc-eeeEEEECCCCceEec
Q 018726          242 IKG-IPALVLIGPDGKTIST  260 (351)
Q Consensus       242 i~~-~P~~~lid~~G~v~~~  260 (351)
                      +.. .|.+++++.+....+.
T Consensus        68 l~e~~P~~~i~~~~~~~ky~   87 (125)
T d2b5ea3          68 MKEQFPLFAIHDMTEDLKYG   87 (125)
T ss_dssp             CCSCSSEEEEEETTTTEEEE
T ss_pred             CCccCCcEEEEecccCcccc
Confidence            854 8999998766554443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.80  E-value=2.1  Score=30.27  Aligned_cols=65  Identities=15%  Similarity=0.295  Sum_probs=43.2

Q ss_pred             cCCCCCeEEEEEeC-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEEEecCChh-hHHHHHhcCCceeeec
Q 018726           38 SSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPF  106 (351)
Q Consensus        38 ~~~~gk~v~v~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~~~  106 (351)
                      +.+++.+.++.|.. +.|+.|..+...+++++.- .++   +.+.....+.++. ...+.++.--.|++.+
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdk---i~~~~~~~~~~e~~~~~~~~~ver~Ps~~i   84 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDK---LSYEIVDFDTPEGKELAKRYRIDRAPATTI   84 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTT---EEEEEEETTSHHHHHHHHHTTCCSSSEEEE
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCC---eEEEEeccCcchhhhHHHhhccccCceEEE
Confidence            44566665666654 5799999998888888763 444   6777777776543 3556666555666655

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.08  E-value=2  Score=29.83  Aligned_cols=54  Identities=20%  Similarity=0.175  Sum_probs=32.9

Q ss_pred             CCChhhHHhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHhhhccCCceeeccCchhhHHHHHHcCcCceeeEEEEC
Q 018726          173 HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIG  252 (351)
Q Consensus       173 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid  252 (351)
                      |.||+|.+....|.+    +      ++.+..+.++.+.+.                   ...+.+..+...+|.+|+  
T Consensus        28 p~Cp~c~~ak~lL~~----~------~i~~~~~~v~~~~~~-------------------~~~l~~~t~~~TvPqIFi--   76 (109)
T d1wika_          28 AKCGFSKQILEILNS----T------GVEYETFDILEDEEV-------------------RQGLKTFSNWPTYPQLYV--   76 (109)
T ss_dssp             CCSSTHHHHHHHHHH----T------CSCEEEEESSSCHHH-------------------HHHHHHHHSCCSSCEEEC--
T ss_pred             CCChHHHHHHHHHHh----c------CCCceEEEecccHHH-------------------HHHHHHhcCCCCCCeEEE--
Confidence            779999987766543    2      234555666654311                   234455567788999885  


Q ss_pred             CCCceE
Q 018726          253 PDGKTI  258 (351)
Q Consensus       253 ~~G~v~  258 (351)
                       +|+-+
T Consensus        77 -~g~~I   81 (109)
T d1wika_          77 -RGDLV   81 (109)
T ss_dssp             -SSSEE
T ss_pred             -CCEEE
Confidence             45544