Citrus Sinensis ID: 018727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHccccHHHHHcccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHcccccHHccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITgtkvdthilpfkidyrffl
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITgtkvdthilpfKIDYRFFL
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFFL
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFF*
Disordered Region (DISOPRED)
*****************************************ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH**************************EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFFL
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFFL
Disordered Region (DISPRO)
********REPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAS***********TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKIDYRFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.897	0.658	0.720	1e-134
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.931	0.672	0.659	1e-125
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.874	0.634	0.606	1e-109
P25351	611	Uncharacterized membrane	yes	no	0.621	0.356	0.324	4e-29
B4EYY4	402	Multidrug resistance prot	yes	no	0.501	0.437	0.281	3e-10
A8GCZ5	411	Multidrug resistance prot	no	no	0.501	0.428	0.275	1e-09
D8MQN9	411	Multidrug resistance prot	no	no	0.555	0.474	0.269	3e-09
P0A4K5	399	Multi-drug resistance eff	yes	no	0.413	0.363	0.298	2e-08
P0A4K4	399	Multi-drug resistance eff	yes	no	0.413	0.363	0.298	2e-08
P02980	401	Tetracycline resistance p	yes	no	0.518	0.453	0.248	3e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/318 (72%), Positives = 265/318 (83%), Gaps = 3/318 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITG 333
           GGL YST  VG VLA +G
Sbjct: 308 GGLGYSTADVGSVLAFSG 325

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/332 (65%), Positives = 260/332 (78%), Gaps = 5/332 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
           SEIF+LWANSP+K GGL+YST  VG VLAI+G
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISG 333

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/318 (60%), Positives = 241/318 (75%), Gaps = 11/318 (3%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
           PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 316 GGLNYSTQMVGEVLAITG 333
           GGL++S+Q VGEVLAI+G
Sbjct: 309 GGLSFSSQDVGEVLAISG 326

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
            K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SS
Sbjct: 8   FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           F   + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG
Sbjct: 68  FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127

Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
            +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F  
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187

Query: 206 -SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
            ++ +   +PY LP + + +F  FG+T A  +L ET     D  D
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLF-SAIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLF 225
            ++LF
Sbjct: 185 IVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L T+ST    G +IGP +GG LA      P  + +  +       L C 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLADQYGLRPVFYITAGV------LLTCF 184

Query: 221 CISLF 225
            ++L 
Sbjct: 185 VLTLL 189

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
            ++LFA           + LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 48  IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD 107
           +I L  A+ I  + P L  ++++F      EDI ++ G + + +   + + + + G ++D
Sbjct: 10  VITLLDAMGIGLIMPVLPTLLREF---IASEDIANHFGVLLALYALMQVIFAPWLGKMSD 66

Query: 108 RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEH 167
           R+GR+PV+++      +   L   S   WM  L R     L+G+ G   A A  +  +  
Sbjct: 67  RFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRL----LSGITGATGAVAASVIADTT 122

Query: 168 QALG----LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
            A         +  ++G+GLI GP +GGF     E  P+           P+F+  L ++
Sbjct: 123 SASQRVKWFGWLGASFGLGLIAGPIIGGF---AGEISPH----------SPFFIAAL-LN 168

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           +  F V +  FW  ET +  ++ D    V
Sbjct: 169 IVTFLVVM--FWFRETKNTRDNTDTEVGV 195

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
224097490	495	predicted protein [Populus trichocarpa]	0.931	0.660	0.763	1e-141
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.931	0.201	0.709	1e-139
296085436	518	unnamed protein product [Vitis vinifera]	0.940	0.637	0.706	1e-139
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.928	0.669	0.733	1e-138
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.894	0.655	0.721	1e-134
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.931	0.671	0.744	1e-134
30684565	478	zinc induced facilitator-like 1 protein	0.897	0.658	0.720	1e-132
79327804	411	zinc induced facilitator-like 1 protein	0.897	0.766	0.720	1e-132
227202678	392	AT5G13750 [Arabidopsis thaliana]	0.897	0.803	0.720	1e-131
255572895	500	carbohydrate transporter, putative [Rici	0.937	0.658	0.635	1e-128

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/334 (76%), Positives = 287/334 (85%), Gaps = 7/334 (2%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVKEEE------GREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K +E      GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+G
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISG 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/334 (70%), Positives = 283/334 (84%), Gaps = 7/334 (2%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 245  DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
            +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 300  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+G
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISG 1471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/337 (70%), Positives = 284/337 (84%), Gaps = 7/337 (2%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKV 336
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+G  V
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGV 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/334 (73%), Positives = 283/334 (84%), Gaps = 8/334 (2%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
           AY EIFSLWA SP+  GGL+YST  VG VLAI+G
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISG 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/320 (72%), Positives = 268/320 (83%), Gaps = 6/320 (1%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           E +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  ENKFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVS 253
           PA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H   DDDD    S
Sbjct: 191 PATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKYVDDDD----S 246

Query: 254 YDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313
           +DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+
Sbjct: 247 FDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPR 306

Query: 314 KLGGLNYSTQMVGEVLAITG 333
           K GGL YST  VG VLAI+G
Sbjct: 307 KYGGLGYSTADVGSVLAISG 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/337 (74%), Positives = 288/337 (85%), Gaps = 10/337 (2%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+G
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISG 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/318 (72%), Positives = 265/318 (83%), Gaps = 3/318 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITG 333
           GGL YST  VG VLA +G
Sbjct: 308 GGLGYSTADVGSVLAFSG 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327804|ref|NP_001031877.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|332004554|gb|AED91937.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/318 (72%), Positives = 265/318 (83%), Gaps = 3/318 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITG 333
           GGL YST  VG VLA +G
Sbjct: 308 GGLGYSTADVGSVLAFSG 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227202678|dbj|BAH56812.1| AT5G13750 [Arabidopsis thaliana]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/318 (72%), Positives = 265/318 (83%), Gaps = 3/318 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITG 333
           GGL YST  VG VLA +G
Sbjct: 308 GGLGYSTADVGSVLAFSG 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572895|ref|XP_002527379.1| carbohydrate transporter, putative [Ricinus communis] gi|223533250|gb|EEF35004.1| carbohydrate transporter, putative [Ricinus communis]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/340 (63%), Positives = 263/340 (77%), Gaps = 11/340 (3%)

Query: 5   EEKLREPFLKNEK-----RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISS 59
           E+  R+  L         RYYENCPGC++D  K T   +P+  LF +WI+VLC ALPISS
Sbjct: 8   EKNYRQTLLDKTNSSSSGRYYENCPGCQLDLFKQTNPAIPVKHLFYVWIVVLCAALPISS 67

Query: 60  LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119
           LFPFLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG++ADRYGRKPVI+ G 
Sbjct: 68  LFPFLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVLWGVIADRYGRKPVIVFGM 127

Query: 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAW 179
            +V++FNTLFGLS +FWMA+  RFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+W
Sbjct: 128 IAVIVFNTLFGLSTSFWMAISLRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSW 187

Query: 180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           GIGL+IGPALGGFLAQP EKYPN+FS  S+FG+FPYFLPCL IS+F   V +    LPET
Sbjct: 188 GIGLVIGPALGGFLAQPVEKYPNIFSKVSIFGRFPYFLPCLLISIFTLAVLVVCCSLPET 247

Query: 240 LHRHNDDDDSCDVSYDALES------ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV 293
           LH H   +  CD   D  ES      ++   +  +G+ +TP++SLLKNWPLMSSIIVYC+
Sbjct: 248 LHNHKGKEKECDYLCDDQESNVDESNSNKRAQMNKGKSSTPEESLLKNWPLMSSIIVYCI 307

Query: 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
           F LHDMAY+EIFSLWA SP+K GGL+YST  VGEVLAI+G
Sbjct: 308 FQLHDMAYTEIFSLWAVSPRKNGGLSYSTADVGEVLAISG 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.897	0.658	0.654	2.6e-109
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.931	0.672	0.590	1.8e-101
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.888	0.644	0.571	8.1e-92
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.581	0.345	0.344	8e-35
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.410	0.263	0.386	2e-30
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.595	0.314	0.309	3.7e-30
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.410	0.227	0.379	9.9e-29
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.601	0.315	0.297	1.2e-27
ASPGD|ASPL0000011265	530	AN4019 [Emericella nidulans (t	0.575	0.381	0.276	7.2e-26
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.441	0.322	0.354	8.2e-26

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 208/318 (65%), Positives = 242/318 (76%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITG 333
             GGL YST  VG VLA +G
Sbjct:   308 GGLGYSTADVGSVLAFSG 325

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 196/332 (59%), Positives = 236/332 (71%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
             SEIF+LWANSP+K GGL+YST  VG VLAI+G
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISG 333

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 179/313 (57%), Positives = 223/313 (71%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
             PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   321 STQMVGEVLAITG 333
             S+Q VGEVLAI+G
Sbjct:   314 SSQDVGEVLAISG 326

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFGVTIAAFWLPET 239
             + LP L C+ +   G+ +   +L ET
Sbjct:   201 FLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
 Identities = 65/210 (30%), Positives = 102/210 (48%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
              FP+FLP L I+ L   G      ++ ETL
Sbjct:   188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 9.9e-29, Sum P(2) = 9.9e-29
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 63/212 (29%), Positives = 109/212 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
             +F +FPY LP +   LF+  G+ +   +L E+
Sbjct:   245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ASPGD|ASPL0000011265 AN4019 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
 Identities = 57/206 (27%), Positives = 102/206 (49%)

Query:    38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRAL 97
             LP+ +L  + I      + ++S  P+L  MI+   + + E  +  +AG   +   F +A 
Sbjct:     8 LPVRQLLILSICRFAEPIAVTSYLPYLPEMIESVGVPQSE--VAKWAGLTSAISSFSQAA 65

Query:    98 TSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKA 157
              +V+WG  +DR+GRKP+I++G  + ++ +  FGLS +  M +  R ++G +NG +G I+ 
Sbjct:    66 MAVYWGTASDRFGRKPIILLGLTATMVLSLAFGLSKSLPMLITCRGMIGFMNGNVGIIRT 125

Query:   158 YACEIFRE-EHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFPYF 216
                E+ ++ E Q    S +                   +P EKYP +F     F ++P+ 
Sbjct:   126 MVAEMVQDKELQPRAFSIMPMVWTIGSIFGPSFGGSLARPTEKYPEIFGHSWFFKEYPFV 185

Query:   217 LPCLCISLF-AFGVTIAAFWLPETLH 241
             LP +    F   G++    +L ETLH
Sbjct:   186 LPNMVAGFFFIIGISTGFLFLHETLH 211

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.7201	0.8974	0.6589	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-22
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-21
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-14
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-13
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	4e-12
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-10
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-08
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	1e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-07
COG0477	338	COG0477, ProP, Permeases of the major facilitator	1e-06
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	2e-06
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	2e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	2e-04
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	3e-04
PRK10489	417	PRK10489, PRK10489, enterobactin exporter EntS; Pr	4e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.001
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.001
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.002
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	0.004

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 94.3 bits (235), Expect = 8e-22
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 18/212 (8%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE----------SLFG 211
            F  + +   L   S  +G+G ++GP LGG LA+ +  +  LF              LF 
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-SLGWRWLFLILAILGLLLALLLLFL 173

Query: 212 KFPYFLPCLCISLFAFGVTIAAFWLPETLHRH 243
                L  L   L +FG      +LP  L   
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEV 205

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 94.0 bits (234), Expect = 1e-21
 Identities = 63/290 (21%), Positives = 106/290 (36%), Gaps = 45/290 (15%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+       +  G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISP------TEIGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
           L   + +              F+L    P     L  S  + G +L + G
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAG 247

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 67  MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
           +  ++ +   +       G++ S+ + G A  ++F+G +ADR GR+ V++       +F 
Sbjct: 43  ISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFT 96

Query: 127 TLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
            L  L+ N    ++ RFL G  L GL+  + A   E   +  +   +  +   + IG  +
Sbjct: 97  LLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV 156

Query: 186 GPALGGFL 193
           G  L G+L
Sbjct: 157 GGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 20/197 (10%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
           E+   E +       +T   +G  +GP L G                 L     Y    L
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGL----------------LLDTGGYGGVFL 335

Query: 221 CISLFAFGVTIAAFWLP 237
            ++  A    +    LP
Sbjct: 336 ILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT    +    
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
             L+      +  RF    L+GL        I A   ++F +E  +  +S V+    I  
Sbjct: 73  CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128

Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
           ++ P +GG+L          FS  ++F           ++L A       F+  PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172

Query: 243 HN 244
             
Sbjct: 173 ER 174

Length = 377

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 44  FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG 103
             + + +L       +L  +L    +   ++         AG +        A+  +  G
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA------LLAGLLLGLAGLLGAIGRLLLG 258

Query: 104 LVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA 159
            ++DR GR+  +++    +++      L  L+ +    ++   LLG   GL+ P + A  
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALV 318

Query: 160 CEIFREEHQALGLSTVSTAWGIGLIIGP 187
            ++  +E +       +TA  +G  +GP
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L ++ +  L   L +  L P L  ++    ++          G + S+F  G A+ S+  
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLS----SGRLLYGLLLSAFFLGYAIGSLLA 59

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYA 159
           G + DRYGR+ V+I+G    ++   L  L+ N    + ++ R L G   G L P+  A  
Sbjct: 60  GPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119

Query: 160 CEIFREEHQALGLSTV--STAWGIGLIIGPALGGFLA 194
            E F E  +      +    A  +GL +GP L G L 
Sbjct: 120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156

Length = 338

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F    +NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFF---VNGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPET 239
                  + +++   G  I A+ LP+ 
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV 202

Length = 1146

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 23/125 (18%)

Query: 88  GSSFMFGRALT----SVFWGL-----VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM- 137
           GS+   G ++T    ++F GL     +ADRY RK +I++   +  +     GL++N ++ 
Sbjct: 49  GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLG--FIGLALNAFLP 106

Query: 138 --AVLTRFLLGSLNGLLGPIKAYACE------IFREE-HQALGLSTVSTAWGIGLIIGPA 188
             ++L  +LLG  +G  G +   A        + RE   QA  ++ ++    +G +I PA
Sbjct: 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR--LGSVISPA 164

Query: 189 LGGFL 193
           LGG L
Sbjct: 165 LGGLL 169

Length = 417

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116
           I        F    F  A  +    S  G V S F+ G  + ++F G ++DR+GRK  ++
Sbjct: 47  IGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105

Query: 117 MGTASVV---IFNTLFGLSVNFWMAVLTRFLLGSLNGL---LGPIKAYACEIFREEHQAL 170
           +     V   I   L   +++  M ++ R LLG   G+   L P+  Y  EI  +  +  
Sbjct: 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM--YLSEIAPKALRGA 163

Query: 171 GLSTVSTAWGIGLIIG 186
             S    A   G+++ 
Sbjct: 164 LTSLYQLAITFGILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL--LG 146
           + ++ G A   + WG ++DRYGR+PV+++G     + +    LS N    ++ RF+   G
Sbjct: 47  TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106

Query: 147 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           +  G +   +A   +I+  E  +   S +     +   + P LGG++
Sbjct: 107 ASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 48  IIVLCTALPISSLFP-FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           ++ L  AL ++      LY+       A            +         L +  W  +A
Sbjct: 229 LLYLLNALAMAVRNGLLLYYFTYVLGNA-------GLFSVLLLIGTIAAILGAPLWPWLA 281

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI 155
            R+G+K   ++G     I   L       + W+ ++   L G   GL   +
Sbjct: 282 KRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLL 332

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.96
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
KOG2615	451	consensus Permease of the major facilitator superf	99.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.94
PRK12307	426	putative sialic acid transporter; Provisional	99.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.94
PLN00028	476	nitrate transmembrane transporter; Provisional	99.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.94
PRK10133	438	L-fucose transporter; Provisional	99.93
PRK10091	382	MFS transport protein AraJ; Provisional	99.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.93
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.93
PRK03699	394	putative transporter; Provisional	99.93
TIGR00805	633	oat sodium-independent organic anion transporter.	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
PRK03633	381	putative MFS family transporter protein; Provision	99.92
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.92
PRK15075	434	citrate-proton symporter; Provisional	99.92
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.92
PRK11043	401	putative transporter; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.91
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.91
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
KOG2532	466	consensus Permease of the major facilitator superf	99.91
PRK03893	496	putative sialic acid transporter; Provisional	99.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.91
KOG2533	495	consensus Permease of the major facilitator superf	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PRK05122	399	major facilitator superfamily transporter; Provisi	99.89
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.89
PRK10054	395	putative transporter; Provisional	99.89
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.89
TIGR00898	505	2A0119 cation transport protein.	99.89
PRK12382	392	putative transporter; Provisional	99.89
PRK09874	408	drug efflux system protein MdtG; Provisional	99.89
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK10489	417	enterobactin exporter EntS; Provisional	99.88
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.88
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.87
KOG0254	513	consensus Predicted transporter (major facilitator	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.87
PRK11010	491	ampG muropeptide transporter; Validated	99.86
PRK11902	402	ampG muropeptide transporter; Reviewed	99.85
TIGR00901	356	2A0125 AmpG-related permease.	99.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.84
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.84
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.84
PRK15011	393	sugar efflux transporter B; Provisional	99.83
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.83
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.82
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.81
PRK09528	420	lacY galactoside permease; Reviewed	99.81
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.79
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.78
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.77
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.76
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.76
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.73
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.72
PTZ00207	591	hypothetical protein; Provisional	99.71
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.7
PRK10642	490	proline/glycine betaine transporter; Provisional	99.69
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.64
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.63
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.63
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.62
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.6
PRK05122	399	major facilitator superfamily transporter; Provisi	99.6
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.59
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.57
PRK10429	473	melibiose:sodium symporter; Provisional	99.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.55
KOG3626	735	consensus Organic anion transporter [Secondary met	99.55
KOG2563	480	consensus Permease of the major facilitator superf	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
PRK09669	444	putative symporter YagG; Provisional	99.53
PRK09528	420	lacY galactoside permease; Reviewed	99.53
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.52
PRK09705	393	cynX putative cyanate transporter; Provisional	99.52
TIGR00893	399	2A0114 d-galactonate transporter.	99.51
PF13347	428	MFS_2: MFS/sugar transport protein	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
PRK03699	394	putative transporter; Provisional	99.51
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.51
PRK12382	392	putative transporter; Provisional	99.5
PRK03893	496	putative sialic acid transporter; Provisional	99.5
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
PRK03633	381	putative MFS family transporter protein; Provision	99.49
PRK03545	390	putative arabinose transporter; Provisional	99.49
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.49
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.49
PRK09874	408	drug efflux system protein MdtG; Provisional	99.48
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.46
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.46
PRK09952	438	shikimate transporter; Provisional	99.46
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.45
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.44
PRK09848	448	glucuronide transporter; Provisional	99.44
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.41
TIGR00895	398	2A0115 benzoate transport.	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.4
PRK10504	471	putative transporter; Provisional	99.38
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.38
PRK12307	426	putative sialic acid transporter; Provisional	99.37
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.37
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
TIGR00898	505	2A0119 cation transport protein.	99.36
PRK15075	434	citrate-proton symporter; Provisional	99.36
KOG0569	485	consensus Permease of the major facilitator superf	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
PRK11462	460	putative transporter; Provisional	99.34
PLN00028	476	nitrate transmembrane transporter; Provisional	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
COG2211	467	MelB Na+/melibiose symporter and related transport	99.31
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
PRK11010	491	ampG muropeptide transporter; Validated	99.3
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.3
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.3
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.28
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.28
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.24
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.22
PRK10054	395	putative transporter; Provisional	99.22
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.21
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.2
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
PRK10091	382	MFS transport protein AraJ; Provisional	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.17
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.16
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.15
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.14
TIGR00901	356	2A0125 AmpG-related permease.	99.14
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.14
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.11
PRK11902	402	ampG muropeptide transporter; Reviewed	99.11
PF13347	428	MFS_2: MFS/sugar transport protein	99.1
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.1
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.09
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.08
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.08
PRK09848	448	glucuronide transporter; Provisional	99.06
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.06
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.05
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.04
PRK11043	401	putative transporter; Provisional	99.02
PRK10133	438	L-fucose transporter; Provisional	99.0
PRK10429	473	melibiose:sodium symporter; Provisional	99.0
KOG2532	466	consensus Permease of the major facilitator superf	98.99
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.97
PRK09669	444	putative symporter YagG; Provisional	98.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.91
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.83
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.82
COG0477	338	ProP Permeases of the major facilitator superfamil	98.8
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.79
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.78
PRK11462	460	putative transporter; Provisional	98.74
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.74
KOG0637	498	consensus Sucrose transporter and related proteins	98.73
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.72
KOG0254	513	consensus Predicted transporter (major facilitator	98.71
KOG3762	618	consensus Predicted transporter [General function	98.68
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.62
COG2211	467	MelB Na+/melibiose symporter and related transport	98.6
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.59
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.5
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.49
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.45
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.43
PF12832	77	MFS_1_like: MFS_1 like family	98.42
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.39
PTZ00207	591	hypothetical protein; Provisional	98.39
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.35
KOG2533	495	consensus Permease of the major facilitator superf	98.33
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.28
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.25
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.16
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.09
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.08
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.03
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.93
KOG2615	451	consensus Permease of the major facilitator superf	97.77
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.66
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.64
KOG2563	480	consensus Permease of the major facilitator superf	97.52
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.49
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.48
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.47
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.43
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.3
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.23
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.03
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.87
COG3202	509	ATP/ADP translocase [Energy production and convers	96.72
KOG3762	618	consensus Predicted transporter [General function	96.69
PRK03612	521	spermidine synthase; Provisional	96.64
KOG3810	433	consensus Micronutrient transporters (folate trans	96.52
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.32
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.29
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.1
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.97
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.39
TIGR00805	633	oat sodium-independent organic anion transporter.	95.29
KOG3097	390	consensus Predicted membrane protein [Function unk	94.32
PF12832	77	MFS_1_like: MFS_1 like family	94.28
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.2
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.17
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.1
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.74
KOG3880	409	consensus Predicted small molecule transporter inv	91.52
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	90.79
KOG0637	498	consensus Sucrose transporter and related proteins	88.64
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	85.69
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	85.59
KOG3626	735	consensus Organic anion transporter [Secondary met	84.93
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	81.89
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	81.24
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	80.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	80.65

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.2e-28  Score=212.30  Aligned_cols=261  Identities=20%  Similarity=0.212  Sum_probs=224.4

Q ss_pred             CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      ..+..++.+.++.|..+.........+|++.+|+|.|..+      .|+..++|.++.+++.++...+.||+.||++++.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            4456777888899999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      .+.++.++++++++++|++.++++|++.|+..|.+.+. .++..++.|+++|++++++...+..++.++|.+++.++.+ 
T Consensus        84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~-  162 (394)
T COG2814          84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ-  162 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH-
Confidence            99999999999999999999999999999998888875 9999999999999999999999999999999999999999 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (351)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                                     .+|||..|.+...++++.+ ..+..+|  |+...++.+                     .+..+.
T Consensus       163 ---------------~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~---------------------~~~~~~  204 (394)
T COG2814         163 ---------------LFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP---------------------GPLRTL  204 (394)
T ss_pred             ---------------HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC---------------------cchhHH
Confidence                           4555555577777766654 4466677  111111110                     111234


Q ss_pred             cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR  348 (351)
Q Consensus       276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r  348 (351)
                      .+.+|+|.++...+..++.+..++..+++...++++.     .|++...+++++..++++.+++...+ |+.||
T Consensus       205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr  273 (394)
T COG2814         205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR  273 (394)
T ss_pred             HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            5678999999999999999999999999999899887     89999999999999999999987665 66665

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.96  E-value=4.8e-27  Score=214.65  Aligned_cols=284  Identities=13%  Similarity=0.050  Sum_probs=208.9

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .++.++.+++.++++.++....+...|.+.+++|++..+      .+++.+++.+++.+++++.|+++||+|||+++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~   79 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI   79 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence            455666778888888999999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      .++..++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++++.+..+|.++++.+++++.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999998887775 788999999999999999999999999999999999886411


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCc-cchhhHHHhhhhhhh---hhhhhhcc-
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDD-SCDVSYDALESASAE---VKEEEGRE-  271 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~-  271 (351)
                      + ...         ..+||..+.+.++..++. .+..+++||+|++...-.+ +++...+..+....+   .++...+. 
T Consensus       160 ~-~~~---------~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (412)
T TIGR02332       160 G-LMA---------LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAA  229 (412)
T ss_pred             C-CCC---------ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccccccc
Confidence            0 000         234555556665555443 4456677888754321111 111111111111000   00000000 


Q ss_pred             ---cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          272 ---ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       272 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                         ...+++++ ++.++...+.+++.......+.+++|.|+++.    +.+++..+++.+.....++.+++.+..
T Consensus       230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l~~  299 (412)
T TIGR02332       230 MPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMIWW  299 (412)
T ss_pred             ccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHHHH
Confidence               11223333 57788878888888888888899999998762    146778888888888887777765543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=6.5e-28  Score=208.58  Aligned_cols=279  Identities=18%  Similarity=0.154  Sum_probs=224.3

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      +++.++.+++.+...++.+...+...|.+.++.++|..|      .|++.+++.+.+.++..+.|.++||.+.|+.+.++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            344556778888888888889999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh--hhhcC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQ  195 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~  195 (351)
                      ++++++..++++++++.+.+.++.+++|+.+|.-.| +...++.|+++++||+..++++.+.++|+.+.|++.  +.+..
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            999999999999999999999999999999988665 699999999999999999999999999999999999  78876


Q ss_pred             CCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhh-hhcccC
Q 018727          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE-EGREAT  273 (351)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  273 (351)
                                      +.+|+..+++.++++++. +++++.++++|+...-.+-++ ...+..+...++.+.+ ....+.
T Consensus       181 ----------------~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~-~~~d~~e~~~~~~~~~~ls~~~i  243 (448)
T COG2271         181 ----------------HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE-YRGDPLEIYEEEKENEGLTAWQI  243 (448)
T ss_pred             ----------------ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH-hhcCchhhhhhhccCCCccHHHH
Confidence                            344555556666666554 455666777776543222111 1111111110000000 111222


Q ss_pred             cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccccc
Q 018727          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFKI  345 (351)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~  345 (351)
                      -.+.+++||.+|.+++.+++.+..-.+...+.|.|+.+.     .|+|...++...+.+=.+++.+.++.++
T Consensus       244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~Ll~Gw  310 (448)
T COG2271         244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTLLAGW  310 (448)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345678999999999999999999999999999999998     8999999999999999888888777654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.95  E-value=2.2e-26  Score=215.16  Aligned_cols=283  Identities=14%  Similarity=0.104  Sum_probs=211.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +..+..+++..++..++.+.+++.+|.+.+++|.+..+      .+|+.+.+.++..++.+++|+++||+|||+++.++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34456788889999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      ++..++.++++++++++.++++|+++|++.+...+. ...+.+.+ |+++|++++++......+|..+||.+++.+.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            999999999999999999999999999998877664 66676665 67999999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhH---------HHhhhhhh-----
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA-----  262 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~-----  262 (351)
                           ++|||         +.+++...+.++. ++..+.+|++++++.++.+......         ...+....     
T Consensus       157 -----~~gwr---------~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~  222 (495)
T PRK14995        157 -----HFYWG---------SVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL  222 (495)
T ss_pred             -----cCChH---------HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence                 44554         4445554444443 3445556765433221111111000         00000000     


Q ss_pred             -----------------hhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhh
Q 018727          263 -----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (351)
Q Consensus       263 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  325 (351)
                                       ...+.+.+.+....+++|+|.++...+..++......+...++|.|++..     +|+++.++
T Consensus       223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a  297 (495)
T PRK14995        223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA  297 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence                             00111122223345778999888877777777777777888889888876     79999999


Q ss_pred             HHHHHHHhhhHHhhhcc-----ccccccc
Q 018727          326 GEVLAITGTKVDTHILP-----FKIDYRF  349 (351)
Q Consensus       326 g~~~~~~~~~~~~~~~~-----~~~~~r~  349 (351)
                      |..+....++..++...     .|+++|+
T Consensus       298 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  326 (495)
T PRK14995        298 GMFMLPVMVASGFSGPIAGILVSRLGLRL  326 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            99998887776554433     3565554

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=4e-26  Score=207.45  Aligned_cols=256  Identities=16%  Similarity=0.159  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      ..++.+.+..+......+...+.+|.+.+++|.+..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545          9 LRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3444445544444444445667789999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +.+++.++++++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+.++|..++|.+++.+.+    
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~----  158 (390)
T PRK03545         83 LFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ----  158 (390)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH----
Confidence            99999999999999999999999999988777664 8899999999999999999999999999999999999887    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
                                  ..+|+.++.+.++..++.. +....+||+++++   +   + .                  .+..++.
T Consensus       159 ------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~---~---~-~------------------~~~~~~~  201 (390)
T PRK03545        159 ------------YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH---S---G-S------------------LKSLPLL  201 (390)
T ss_pred             ------------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---c---c-h------------------HHHHHHH
Confidence                        4455555566665555443 3334455542210   0   0 0                  0123457


Q ss_pred             ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR  348 (351)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r  348 (351)
                      +|+|.++......++.........++.+.|+.+.     .|+++.+++.+.+..+++.+++++.. ++.||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr  267 (390)
T PRK03545        202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSVLFSRLGNR  267 (390)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7888877665555555555555556666676654     68899999999888888877766553 44444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.95  E-value=2e-26  Score=212.13  Aligned_cols=276  Identities=16%  Similarity=0.157  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      ++..++..++..+....+.+.+|.+.+++|++..+      .+++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34555666667777778888899999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (351)
                      +++.++++.+++++.+++.|++.|++.|...+ ...++.|++|+++|++++++.+.+..+|..++|.+++.+.+      
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~------  172 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL------  172 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            99999999999999999999999998777656 48899999999999999999999999999999999999987      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc-c-ccc
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-KSL  278 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~  278 (351)
                                .++|+..+.+.++..++. ++..+.+||++++......... +.+..+.. ++.+. +..+... . ...
T Consensus       173 ----------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~  239 (434)
T PRK11663        173 ----------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-RHDALELA-QQQEG-AGLSRKEILTKYV  239 (434)
T ss_pred             ----------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-cccccccc-hhccc-cCCChhhhHHHHH
Confidence                      445555556655544433 3444566776543211110000 00000000 00000 0000011 1 125


Q ss_pred             ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR  348 (351)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r  348 (351)
                      ++++.++...+..++..........++|.|+.+.     +|++..+++...+...++.+++++.. .+.||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr  305 (434)
T PRK11663        240 LLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGALVAGWGSDK  305 (434)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            6788888887777777777777888899998665     78999999999998888887766554 33443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.95  E-value=2.9e-26  Score=205.65  Aligned_cols=237  Identities=15%  Similarity=0.048  Sum_probs=179.2

Q ss_pred             hccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh
Q 018727           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (351)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~  133 (351)
                      ......+.+.+|.+.+|+|++..+      .+++.+.+.+++.+++++.|+++||+|||+++..+......+.......+
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   77 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF   77 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc
Confidence            344556788999999999999999      99999999999999999999999999999887665555444433333337


Q ss_pred             hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727          134 NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (351)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (351)
                      +++.+++.|+++|++.+...+....++|++|+++|++++++.+.+..+|.++++.+++.+.+                .+
T Consensus        78 ~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----------------~~  141 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT----------------AG  141 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------cc
Confidence            89999999999999988655556667999999999999999999999999999999999987                44


Q ss_pred             cchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHH
Q 018727          214 PYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  292 (351)
                      +||..+.+.+++.++ .++..+++||+++++.+..   +.  +       +       ..+++++++++|.+|...+.++
T Consensus       142 gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~---~~--~-------~-------~~~~~~~ll~~~~~~~~~~~~~  202 (368)
T TIGR00903       142 GLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGF---GF--K-------D-------AVKEFGALAGRKDLWIIGAILG  202 (368)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc---ch--H-------H-------HHHHHHHHHcChhHHHHHHHHH
Confidence            455555665555544 4455667888765432110   00  0       0       0013567889999999999999


Q ss_pred             HHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT  338 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~  338 (351)
                      +......++.+++|.|+.+      .|++.. .+....+..+...+
T Consensus       203 ~~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~  241 (368)
T TIGR00903       203 FGVALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLI  241 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHH
Confidence            9999999999999999965      356654 45555554444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=5.4e-26  Score=209.22  Aligned_cols=271  Identities=14%  Similarity=0.078  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcc---cccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      +.+...++..+++.++...+....|.+.++++.   +..+   ..+.+.+.+...++..++++++|+++||+|||+++.+
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344456677888899998988888999999853   2222   0113334455556666999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727          118 GTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (351)
                      +.++++++.+++++++++.        .+++.|+++|++.|...+ ..++++|++|+++|+++.++.+.+...|.++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877653        688999999999887766 4999999999999999999988888888888887


Q ss_pred             hhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhh
Q 018727          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (351)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (351)
                      +...+......       . ....++||.+|.+.++..++.++....+||+++++.        +              +
T Consensus       179 ~~~~~~~~~~~-------~-~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~--------------~  228 (432)
T PRK10406        179 VVVVLQQTLED-------A-ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R--------------A  228 (432)
T ss_pred             HHHHHHHhCCH-------H-HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h--------------h
Confidence            76554321000       0 001456777778777766655555445566432110        0              0


Q ss_pred             hcccCcccccccccchHHHHHHHHHH-HhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhcc
Q 018727          269 GREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILP  342 (351)
Q Consensus       269 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~  342 (351)
                      .++..++++++|+++.+...+...+. ......+..++|.|+.+.     +|++..+.+...+...+...+     +.+.
T Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~  303 (432)
T PRK10406        229 LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQPLIGALS  303 (432)
T ss_pred             hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00112456677888777665554433 555666778888888665     688888888777765555443     3334


Q ss_pred             ccccccc
Q 018727          343 FKIDYRF  349 (351)
Q Consensus       343 ~~~~~r~  349 (351)
                      .|+++|+
T Consensus       304 Dr~grr~  310 (432)
T PRK10406        304 DKIGRRT  310 (432)
T ss_pred             HHcCchH
Confidence            4666664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=1.9e-26  Score=209.37  Aligned_cols=271  Identities=16%  Similarity=0.150  Sum_probs=203.8

Q ss_pred             HHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh
Q 018727           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~  130 (351)
                      ++..++...+....|.+.+++|.+..+      .+++.+++.++..++.++.|+++||+|||+++.++.++.+++..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            344556667778888999999999999      99999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccccccc
Q 018727          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  209 (351)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~  209 (351)
                      ++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+              
T Consensus        78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------------  143 (399)
T TIGR00893        78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI--------------  143 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--------------
Confidence            9999999999999999998877775 8999999999999999999999999999999999998887              


Q ss_pred             ccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHH
Q 018727          210 FGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI  288 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  288 (351)
                        ..+|+..+...++..++..+ ..+..||++++....+++.+....+....+.+.++++.......++.+++|.++...
T Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (399)
T TIGR00893       144 --HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA  221 (399)
T ss_pred             --hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH
Confidence              44455555666555554433 344456654432221111111000000000011111122333456778899999988


Q ss_pred             HHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----ccccc
Q 018727          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYR  348 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r  348 (351)
                      +..++.......+..++|.|+.+.     +++++.+++.+.+...++.+++.+..     |+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  281 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR  281 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888888888888999999998775     78888999988888777766654443     55555

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.95  E-value=5.6e-27  Score=217.83  Aligned_cols=274  Identities=14%  Similarity=0.075  Sum_probs=194.5

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+++.++...++....++..|.+.+++|++..+      .|++.+++.+++.+++++.|+++||+|||+++.++.+++++
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            555566667778888899999999999999999      99999999999999999999999999999999888877777


Q ss_pred             HHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          125 FNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       125 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      +.++.+.     +++++.+++.|++.|++.+...+. ..+++|++|+++||+++|+.+.+.++|.++++.+...+.+.  
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~--  184 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY--  184 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh--
Confidence            6655554     589999999999999998876664 88999999999999999999999999999999988766541  


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc-cc
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KK  276 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  276 (351)
                           .     + ..+|+..+.+.++..++. ++.+++.++++++....++++... +.....+.+.++++...... .+
T Consensus       185 -----~-----~-~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  252 (467)
T PRK09556        185 -----F-----F-DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFG-EPISEEDKETESTDMTKWQIFVE  252 (467)
T ss_pred             -----h-----c-cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccc-CccchhhhccccccCcHHHHHHH
Confidence                 1     0 112344445544444433 333444555543321111100000 00000000000000000001 12


Q ss_pred             ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ..+|+|.+|...+..++.+....+...+.|.|+.+.     +|++..+++...+...++.+++.+..
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~~~  314 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSLLW  314 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999988888888888888888999998776     79999999988887777777666554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.94  E-value=2.5e-25  Score=202.13  Aligned_cols=256  Identities=18%  Similarity=0.153  Sum_probs=193.9

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      ++.++.+....+......+...+.+|.+.+++|.++.+      .++..++..++..+++++.|+++||+|||+++..+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~   92 (394)
T PRK10213         19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFA   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence            44444445554444455556667789999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      ++.+++.++++.+++++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+.++|..++|.+++.+.+   
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~---  169 (394)
T PRK10213         93 VLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE---  169 (394)
T ss_pred             HHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            999999999999999999999999999998887765 8899999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccc
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
                                   .++|+..+.+.+++.++..+. ....||+++++    ++                     .....++
T Consensus       170 -------------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~----~~---------------------~~~~~~~  211 (394)
T PRK10213        170 -------------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP----SH---------------------QKQNTFR  211 (394)
T ss_pred             -------------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc----cc---------------------chhHHHH
Confidence                         344555556655444443322 33355542110    00                     0012345


Q ss_pred             cccccchHHHHHHHHHHHhhHhHHHHHH-HHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-cccccc
Q 018727          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-FKIDYR  348 (351)
Q Consensus       278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-~~~~~r  348 (351)
                      .+|+|.++...+..++..........++ |.|..+      +|+++...+.++...+++.+++.+. +++.||
T Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r  278 (394)
T PRK10213        212 LLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL------AGFGVDGLTLVLLSFGIASFVGTSLSSFILKR  278 (394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6788888887666666665555655665 555543      6899999999999888888776654 344444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=2.3e-25  Score=203.36  Aligned_cols=286  Identities=12%  Similarity=0.156  Sum_probs=200.0

Q ss_pred             CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      ..++.+..+++..+...++.....+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4456667888889999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      +.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~-  161 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP-  161 (405)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999998777664 8999999999999999999999999999999999998876 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhh---hhhhhhhhhcccC
Q 018727          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA---SAEVKEEEGREAT  273 (351)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  273 (351)
                            ..+       .+|+..+.+.++..++.++....+||+++.+..+++++ ...+..++.   +...+........
T Consensus       162 ------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  227 (405)
T TIGR00891       162 ------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKA-LVRTMVDILYGGEHRIANIVMTLAA  227 (405)
T ss_pred             ------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhh-hhhhHHHHHhccchhhhhhhhhhhH
Confidence                  111       12565566665555555555566777654321111100 000000000   0000000000000


Q ss_pred             cccccc-ccc-chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----ccc
Q 018727          274 PKKSLL-KNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KID  346 (351)
Q Consensus       274 ~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~  346 (351)
                      ..++.. +++ .+..........+........++|.|+.+.     +|++..+++.+.+..+++.+++.+..     |++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g  302 (405)
T TIGR00891       228 AMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLG  302 (405)
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            001111 111 122223333333444445566778777655     78999999999888887776655443     555


Q ss_pred             ccc
Q 018727          347 YRF  349 (351)
Q Consensus       347 ~r~  349 (351)
                      +|+
T Consensus       303 ~~~  305 (405)
T TIGR00891       303 RRK  305 (405)
T ss_pred             chh
Confidence            554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=196.75  Aligned_cols=270  Identities=40%  Similarity=0.635  Sum_probs=193.5

Q ss_pred             cchhhhHHHHHHhhcccccccc--hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727           58 SSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (351)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ....++.....++|+....+..  .....|++.+.+++++++.++.+|.++||+|||+++.+|++..++..++.+.++|+
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555566654443333  56668999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccc
Q 018727          136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (351)
                      ..+++.|++.|+.-|...++.++++|++++|+|+.+++.++.+.++|.++||.++|++.+..          ..++++.+
T Consensus       122 ~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~----------~~~g~~p~  191 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS----------SISGSYPF  191 (451)
T ss_pred             HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH----------hhhccCch
Confidence            77777799999999999999999999999999999999999999999999999999998611          12224455


Q ss_pred             hhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHH
Q 018727          216 FLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (351)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  294 (351)
                      ..|.++..+.... .....+++||+-+.++..++. ....+..+.+    ++..+.++......+||++....+..+..+
T Consensus       192 alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~-~~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~  266 (451)
T KOG2615|consen  192 ALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEH-STLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRIF  266 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCccccchhhcccc-cchhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHHH
Confidence            5555555555555 456678899986544433111 1111111111    111111122233456676666555555555


Q ss_pred             HhhHhHHHHHHHHHhcCCCCC--CcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          295 SLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      ....+.+..+++.|.......  .++|+++.+.|-+++..++.+.+.|+.
T Consensus       267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~  316 (451)
T KOG2615|consen  267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLA  316 (451)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHh
Confidence            566666666666555444333  569999999999999999998887654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.94  E-value=1.7e-25  Score=204.42  Aligned_cols=247  Identities=15%  Similarity=0.167  Sum_probs=196.4

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      +.+..+...+....+.|.+|.+.++++.+..+      .++..+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence            34445556677788999999999999999998      999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (351)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (351)
                      .+++..+++++.++++|+++|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+         
T Consensus        95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~---------  165 (413)
T PRK15403         95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH---------  165 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            999999999999999999999987765554 7889999999999999999999999999999999999887         


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (351)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (351)
                             .++|+..+++.++..++..+. .+.+||+++.++++.   +.                ....+.+++++|||.
T Consensus       166 -------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~---~~----------------~~~~~~~~~ll~~~~  219 (413)
T PRK15403        166 -------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPF---SA----------------KSVLRDFRNVFRNRL  219 (413)
T ss_pred             -------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCC---Ch----------------HHHHHHHHHHHcCHH
Confidence                   445555566666665555433 455787643211100   00                001123457789999


Q ss_pred             hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT  338 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~  338 (351)
                      ++...+...+.......+..+.|.++.+.     +|+++.+.++.......+.++
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i  269 (413)
T PRK15403        220 FLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIV  269 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHH
Confidence            99888887777777778888888888775     789999999887666555554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.94  E-value=2.8e-25  Score=204.37  Aligned_cols=265  Identities=17%  Similarity=0.264  Sum_probs=191.8

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      ++.+..+++..+...++.....+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~   90 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI   90 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34556777788888888888889999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      ++.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|+++.++.+.+..+|.++++.+.+.+.+   
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~---  167 (426)
T PRK12307         91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE---  167 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc---
Confidence            999999999999999999999999999998776664 8899999999999999999999999999999999988877   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
                                   ..+|+.++.+..+..++........||++++..++.++          ..++.+.........++++
T Consensus       168 -------------~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  224 (426)
T PRK12307        168 -------------AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG----------KGKHSQSAWSVFSLSMKGL  224 (426)
T ss_pred             -------------cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc----------cccccccchhhhhHHHHHH
Confidence                         34455555554433333222222334432211100000          0000000000011235567


Q ss_pred             ccccchHHHHHHHHH---HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          279 LKNWPLMSSIIVYCV---FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       279 l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      ++++.++.......+   ..........++|.|+.+      .|+++.+.+.+.+..+++.+++++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~~  285 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNIV  285 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            788777654433222   222333456678888765      5788888998888888777765544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.94  E-value=3.9e-25  Score=206.79  Aligned_cols=280  Identities=18%  Similarity=0.212  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      +..+++..++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..++.++.|+++||+|||+++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   77 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF   77 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence            44666777888888889999999999999999988      999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (351)
                      .++.++++.+++++.+++.|+++|++.+...+. ..++.|++|+++|+++++++.....+|..++|.+++.+.+      
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------  151 (485)
T TIGR00711        78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE------  151 (485)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc------
Confidence            999999999999999999999999998887764 8999999999999999999999999999999999999987      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhH---------HHhhhhhh---------
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA---------  262 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~---------  262 (351)
                       .+|||+.|         ++.....++. ++..+..||+++...++.+......         ....+.+.         
T Consensus       152 -~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (485)
T TIGR00711       152 -NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEI  221 (485)
T ss_pred             -CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHH
Confidence             55665554         4444433333 2334456664432221111100000         00000000         


Q ss_pred             --------------hhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHH
Q 018727          263 --------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV  328 (351)
Q Consensus       263 --------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~  328 (351)
                                    ...+.+.+++....+++++|.++...+..++..........++|.|+++.     +|+++.+++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~~  296 (485)
T TIGR00711       222 LILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGLH  296 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHH
Confidence                          00011112222334678899998888888888888888888999998876     78999999999


Q ss_pred             HHHHhhhHHhhhcc-----ccccccc
Q 018727          329 LAITGTKVDTHILP-----FKIDYRF  349 (351)
Q Consensus       329 ~~~~~~~~~~~~~~-----~~~~~r~  349 (351)
                      .....++.+++.+.     .|+++|+
T Consensus       297 ~~~~~~~~~~~~~~~g~l~~r~~~~~  322 (485)
T TIGR00711       297 ILPVGLAPMLSSPIAGRMGDKIDPRK  322 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence            98888777665443     3555554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.94  E-value=5.1e-26  Score=205.57  Aligned_cols=267  Identities=14%  Similarity=0.136  Sum_probs=198.9

Q ss_pred             HHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~  128 (351)
                      .++...+......+..|.+.+++|.+..+      .+++.++..++..+++++.|+++||+|||+++.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            34556667778888889999999999999      999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHH-HhhhhhcCCCCCCCCcccc
Q 018727          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS  206 (351)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~gw  206 (351)
                      ++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+           
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------  145 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-----------  145 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-----------
Confidence            999999999999999999998887664 88999999999999999999999999999999 46666655           


Q ss_pred             cccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchH
Q 018727          207 ESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  285 (351)
                           ..+|+..+.+.+++.++ .++..++.||+++....++.+++.. ++.+..+.+.+++....+...++++++|.++
T Consensus       146 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (379)
T TIGR00881       146 -----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW  219 (379)
T ss_pred             -----cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence                 33444444555544443 3444556666554322111111000 0000000000000111122345677889998


Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ...+..++.......+..+.|.|+.+.     +|+++.+.+.+.+...++.+++++..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~  272 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTLLA  272 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHHHH
Confidence            888888888888888888999988765     78999999999988888777765543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.94  E-value=8.5e-25  Score=203.26  Aligned_cols=272  Identities=12%  Similarity=0.085  Sum_probs=193.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      ++.+...+...++..+......+..|.+.+++|++..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34455566666666666777888899999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      ++++++.++.+++++++.+++.|++.|++.+...+...+++|++|+++|++++++.+...++|..+++.+.+.+......
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998889999999999999999998776555566889999999999999999877777777776666544320000


Q ss_pred             --CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccc
Q 018727          200 --YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (351)
Q Consensus       200 --~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
                        ...         ..+||..+.+.+++.++..+..++++++++....  +  +..     +.   .+.++......+++
T Consensus       189 ~~~~~---------~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~--~--~~~-----~~---~~~~~~~~~~~~~~  247 (476)
T PLN00028        189 AGAPS---------FTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY--R--ELK-----KS---GTMPKDSFSKVLRY  247 (476)
T ss_pred             cCCcc---------hhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch--h--hHH-----hc---CccccccHHHHHHH
Confidence              000         1345555566666665554444444433221110  0  000     00   00000001123455


Q ss_pred             cccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .++++++|...+.+++.......+.++.|.|+.+.     +|++...++.+.++.+++.+++++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~~~  308 (476)
T PLN00028        248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFARPAG  308 (476)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            67788888877777666666667777888887664     78999999999998888887777554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.94  E-value=3.8e-25  Score=200.60  Aligned_cols=255  Identities=18%  Similarity=0.190  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      .++.+....+..........+.+|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~   79 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFI   79 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence            334444455566677788889999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (351)
                      ..++.++...+++++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  154 (385)
T TIGR00710        80 FALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV-----  154 (385)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            9999999999999999999999999998877665 8999999999999999999999999999999999999887     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccc
Q 018727          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (351)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (351)
                                 ..+|+.++.+.++..++.. +..+..||+++++.++  +.+                  ......++.+
T Consensus       155 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~~~  203 (385)
T TIGR00710       155 -----------WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI--QIS------------------TYFETFLLLL  203 (385)
T ss_pred             -----------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC--CHH------------------HHHHHHHHHH
Confidence                       4455555566555554443 3344566654322110  000                  0011244567


Q ss_pred             cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ++|+++...+...........+..+.|.++.+.     +|+++.+++.+.+...++.+++++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~  262 (385)
T TIGR00710       204 KSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGFLN  262 (385)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888777666666666666666777776654     78899999999888887777655443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10133 L-fucose transporter; Provisional

Probab=99.93  E-value=9.1e-25  Score=200.73  Aligned_cols=272  Identities=14%  Similarity=0.120  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      ..+..+.+..+...+......+.+|.+.+++|.++.+      .++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~   99 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            4455666677777888888889999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh---hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          121 SVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       121 ~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      +..++.+++   ..+++++.++++|+++|++.|...+. +.++.|+.|+++|...+++.+....+|..++|.+++.+...
T Consensus       100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~  179 (438)
T PRK10133        100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998775   45789999999999999998887775 88888988777777789999999999999999998776521


Q ss_pred             CCCC-----------CCcccccccccCccchhHHHHHHHHHH-HHHHH-HhccccccccCCCCCccchhhHHHhhhhhhh
Q 018727          197 AEKY-----------PNLFSSESLFGKFPYFLPCLCISLFAF-GVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (351)
Q Consensus       197 ~~~~-----------~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (351)
                      ..+.           ....+||..+ -.+|+.++........ +.++. ....||.+.++   .+  +..          
T Consensus       180 ~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~---~~--~~~----------  243 (438)
T PRK10133        180 NVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS--DAK----------  243 (438)
T ss_pred             CCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---cc--ccc----------
Confidence            1000           0012565554 3567777764333222 22222 23344321110   00  000          


Q ss_pred             hhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHh-cCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA-NSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                          ........++++++|.++...+..+++.....+...+.+.|+ ++.     +|+++.+++..+....++.+++++.
T Consensus       244 ----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~g~s~~~ag~~~~~~~~~~~vG~~~  314 (438)
T PRK10133        244 ----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGRFT  314 (438)
T ss_pred             ----ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                000112345678899888777777777777777777788775 333     7999999999999999988887765


Q ss_pred             c
Q 018727          343 F  343 (351)
Q Consensus       343 ~  343 (351)
                      .
T Consensus       315 ~  315 (438)
T PRK10133        315 G  315 (438)
T ss_pred             H
Confidence            4

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.93  E-value=9.3e-25  Score=197.89  Aligned_cols=251  Identities=17%  Similarity=0.230  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.++.+....++.........+.+|.+.+++|.+..+      .+++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            3455667777778888888899999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+..+|..++|.+++.+.+    
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  152 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----  152 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence            99999999999999999999999999998876665 7888999999999999999999999999999999999887    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
                                  ..+|+.++.+.++..++.. .....+||.+++.+   .  + .              +     ...+.
T Consensus       153 ------------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~---~--~-~--------------~-----~~~~~  195 (382)
T PRK10091        153 ------------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK---G--G-L--------------R-----EQFHF  195 (382)
T ss_pred             ------------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc---c--C-H--------------H-----HHHHH
Confidence                        4445555566655544433 33455676432110   0  0 0              0     00123


Q ss_pred             ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      +|++..+...+...+.+.......++++.|+.+.     .|+++.+.+.+.+..+++.+++++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~  255 (382)
T PRK10091        196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNLLS  255 (382)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhHHH
Confidence            5666666655444444434444444555566544     68999999999999888887766554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.93  E-value=1e-24  Score=196.54  Aligned_cols=279  Identities=13%  Similarity=0.132  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      ++..++..+..........+..|. +.+++|++..+      .+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345666777777777888899995 88999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC--
Q 018727          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE--  198 (351)
Q Consensus       122 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--  198 (351)
                      ..++.+++++++ +++.+++.|++.|++.+...+...+++|++|+++|++++++...+.++|..+++.+++.+.....  
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999998 99999999999999866665568899999999999999999988778888877777766553110  


Q ss_pred             -CCCCcccccccccCccchhHHHH-HHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727          199 -KYPNLFSSESLFGKFPYFLPCLC-ISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (351)
Q Consensus       199 -~~~~~~gw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                       +.+...+||+.|     .   .. ..+..++.++.....+|+++.+.++++.+..  +..    .+.   +.+.....+
T Consensus       157 ~~~~~~~~w~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~---~~~~~~~~~  219 (366)
T TIGR00886       157 AGLPAHLAWGWAF-----V---IVPAGILLLPALLIFFVGADTPPGKPATGKLSFK--GAR----WSV---GTGALGDQL  219 (366)
T ss_pred             ccccccccccchh-----H---HHHHHHHHHHHHHHHHhcccCCcccccchhcccc--ccc----ccc---cchhHHHHH
Confidence             001123444333     0   22 2222233334444556554322111100000  000    000   000111345


Q ss_pred             ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF  349 (351)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~  349 (351)
                      +.+++|+++...+..++.......+..+.+.|+.+.     +|+++.+++.+.+...+..+++++..     |+++|+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  292 (366)
T TIGR00886       220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR  292 (366)
T ss_pred             HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence            577888888877777777777777888889888775     78999999988888887777766543     555544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.93  E-value=6e-25  Score=204.35  Aligned_cols=272  Identities=13%  Similarity=0.111  Sum_probs=197.3

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHH----------------------hhcccccccchhhhhHHHHHHHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGRAL   97 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~~~~~~~~~~   97 (351)
                      +.....+++.......+....+...+.+.+                      +++++..+      .|++.+.+.+++.+
T Consensus        18 ~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~   91 (465)
T TIGR00894        18 LFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQII   91 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHHHH
Confidence            333445555555556665555555544444                      66777777      99999999999999


Q ss_pred             hhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhH
Q 018727           98 TSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST  174 (351)
Q Consensus        98 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~  174 (351)
                      ++++.|+++||+|||+++.++.++++++.+++..+  .+++.+++.|+++|++.+...+. ..+++|++|+++|++++++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999888888776543  55788999999999998888775 8999999999999999999


Q ss_pred             HHHHHHhHHHHHHHhhhhhcCCCCCCCCc-ccccccccCccchhHHHHHHHHHHHHHHHHhc-cccccccCCCCCccchh
Q 018727          175 VSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDV  252 (351)
Q Consensus       175 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~  252 (351)
                      ...+..+|.+++|.+++.+.+       . .|||.         ++++.++..++..+.++. .+|+|+......   ++
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~---------~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~  232 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCE-------SWGGWPM---------IFYVFGIVGCAWSLLWFVFPADDPSIHPCIS---KF  232 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------ccCCCCe---------ehhhhhHHHHHHHHHHHHHhcCCcccCCCCC---HH
Confidence            999999999999999999887       3 24544         446666655554444433 445443222111   11


Q ss_pred             hHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHH
Q 018727          253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT  332 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~  332 (351)
                      +++..++.. +.+..+.+...+++++++++.+|...+..++.+.....+.+++|.|+.+.     +|++..+.|++.++.
T Consensus       233 ~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~~~  306 (465)
T TIGR00894       233 EKKYINSSL-QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSSLP  306 (465)
T ss_pred             HHHHHHhhc-ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHHHH
Confidence            111111110 00000111234577889999999999999998888888899999998776     789999999988887


Q ss_pred             hhhHHhhhcc
Q 018727          333 GTKVDTHILP  342 (351)
Q Consensus       333 ~~~~~~~~~~  342 (351)
                      .++.+++.+.
T Consensus       307 ~~~~~i~~~~  316 (465)
T TIGR00894       307 YLFAWLCSIF  316 (465)
T ss_pred             HHHHHHHHHH
Confidence            7777665444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=5.3e-25  Score=198.01  Aligned_cols=257  Identities=16%  Similarity=0.120  Sum_probs=193.9

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      ++...++..+......+.+|.+..+++.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence            45566677777778888889999999999888      999999999999999999999999999999999999988888


Q ss_pred             HHHhhhhh-----hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       126 ~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      .++.....     +++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  153 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----  153 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            88777776     9999999999999998887775 8999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccc
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (351)
                                  ..+|+..+.+.++..++..+..+..++++..+.++++.++..              ..+.....+.++
T Consensus       154 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  207 (365)
T TIGR00900       154 ------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL  207 (365)
T ss_pred             ------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence                        445555556655555444433333322211111111000000              000112345567


Q ss_pred             cccchHHHHHHHHHHHhhHhHHH-HHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      |+|.++..++..++......... .+.|.|..+.     ++.++.+.+.+.....++.+++.+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGALLL  267 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887777777666665555 7788777665     68899999999988888777755443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=9e-25  Score=204.12  Aligned_cols=285  Identities=13%  Similarity=0.094  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHH-HHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.+...++..++..++...+....|.+.++++.+.+.. .+....+ ..++..+++.++++++|+++||+|||+++.++.
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPS-VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44556778889999999999999999999987554331 0110111 247778899999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHH--------HHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      ++++++.+++++++++..        +++.|+++|++.|...+ ...+++|++|+++|+++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999864        88999999999887666 499999999999999999999888888888888666


Q ss_pred             hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      ..+......       . ....++||.++++.++..++.++....+||++++....++.++        ...+.  ..+.
T Consensus       175 ~~~~~~~~~-------~-~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~--------~~~~~--~~~~  236 (490)
T PRK10642        175 VLISTIVGE-------A-NFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ--------GDREG--LQDG  236 (490)
T ss_pred             HHHHHhcCH-------H-HhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh--------hcccc--cccc
Confidence            544321000       0 0014567777777766555555556678887653211100000        00000  0001


Q ss_pred             ccCcccccccc-cchHH-HHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhccc
Q 018727          271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPF  343 (351)
Q Consensus       271 ~~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~  343 (351)
                      ...++++++++ +..+. .+...++..........+.|.|+.+.     +|++..+.+.......++.++     +.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  311 (490)
T PRK10642        237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD  311 (490)
T ss_pred             ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12234445543 22222 22223334455566777888888654     677777776666655555544     33444


Q ss_pred             cccccc
Q 018727          344 KIDYRF  349 (351)
Q Consensus       344 ~~~~r~  349 (351)
                      |+++|+
T Consensus       312 r~grr~  317 (490)
T PRK10642        312 RFGRRP  317 (490)
T ss_pred             HhccHH
Confidence            777765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.93  E-value=6.6e-25  Score=196.46  Aligned_cols=254  Identities=25%  Similarity=0.455  Sum_probs=191.6

Q ss_pred             HHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      ++..++..+......+.+| .+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence            4566677777778888998 888999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (351)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (351)
                      .++..++++.+.+++.|++.|++.+...+. ..++.|++|+++|++++++.+.+..+|.+++|.+++.+.+         
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---------  146 (352)
T PF07690_consen   76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---------  146 (352)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred             HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---------
Confidence            666666677789999999999998887775 9999999999999999999999999999999999999987         


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC-ccccccccc
Q 018727          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW  282 (351)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~  282 (351)
                             ..+|+.++++.++..++..++ ..+.+++++++..++++++.             +++.++.. .++.+++++
T Consensus       147 -------~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  206 (352)
T PF07690_consen  147 -------YFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP  206 (352)
T ss_dssp             -------HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred             -------ccccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence                   444555556666666665443 34555544433322221110             00111222 366777787


Q ss_pred             chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCc-hhhhHHHHHHHhhhHHhhh
Q 018727          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~g~~~~~~~~~~~~~~  340 (351)
                      .+|......++..........+.|.|+.+.     +|++ ..+.+.+.+..++..+++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  260 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGS  260 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            777556666666666777888888886655     7888 7889988888887776544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=4.7e-24  Score=198.71  Aligned_cols=281  Identities=16%  Similarity=0.137  Sum_probs=205.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.++.+++..++..++.+...+.+|.+.+++|.+..+      .+++.+.+.++..++.+++|+++||+|||++++.+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            4566777888888888888999999999999999988      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +..++.+++.++++++.+++.|+++|++.+...+. ..++.|.+|+++|+++.++.+...++|..++|.+++.+.+    
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~----  159 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE----  159 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----
Confidence            99888888888899999999999999998887765 8899999999999999999999999999999999999988    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHH---------Hhhhhh--------
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYD---------ALESAS--------  261 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~--------  261 (351)
                                  ..+|+..+.+......+..+. ....|+.+.... +.+.......         ..+..+        
T Consensus       160 ------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (471)
T PRK10504        160 ------------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLA  226 (471)
T ss_pred             ------------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHH
Confidence                        334455555555444443333 333444332211 1111000000         000000        


Q ss_pred             --------------hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHH
Q 018727          262 --------------AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (351)
Q Consensus       262 --------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~  327 (351)
                                    ...++.+..++....+++|||+++..++..++..........+.|.|++..     .|.++.++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~  301 (471)
T PRK10504        227 IAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAGL  301 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHH
Confidence                          000111111222234578999998888888877777777777888887764     7889999998


Q ss_pred             HHHHHhhhHHhh-----hccccccccc
Q 018727          328 VLAITGTKVDTH-----ILPFKIDYRF  349 (351)
Q Consensus       328 ~~~~~~~~~~~~-----~~~~~~~~r~  349 (351)
                      +.....++.+++     .+..|+++|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~l~~r~g~~~  328 (471)
T PRK10504        302 MMIPMVLGSMGMKRIVVQVVNRFGYRR  328 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            888777666543     3334666554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=5.3e-24  Score=193.54  Aligned_cols=234  Identities=12%  Similarity=0.050  Sum_probs=181.7

Q ss_pred             cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (351)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      ....+.+|.+.+++|++..+      .+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++++++++++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence            66779999999999999999      999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (351)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (351)
                      +++.|+++|++.+...+. ..++.|++| ++|+++++++..+..+|..+++.+++.+.+.      ..+|         +
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w---------~  163 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETW---------Y  163 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCH---------H
Confidence            999999999998887665 888999997 7799999999999999999999999888761      1134         3


Q ss_pred             hHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHh
Q 018727          217 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (351)
                      ..+...++..++..+..+...+..+  .++++                   +   +...++.++++..+...+..++...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------------~---~~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREV--ASSHK-------------------T---TTTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC--ccccC-------------------C---CcCCcccccCHhHHHHHHHHHHHHH
Confidence            3333333333332222222211111  00000                   0   0122345677777777777777777


Q ss_pred             hHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ......++.|.|+.+      +|+++.++|.+.+..+++.+++++..
T Consensus       220 ~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~~~  260 (393)
T PRK09705        220 GYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGALLM  260 (393)
T ss_pred             HHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHHHH
Confidence            777888889988875      68899999999999999888877655

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=2.9e-24  Score=196.38  Aligned_cols=261  Identities=16%  Similarity=0.088  Sum_probs=191.6

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      ++..+...+...++..++.....+..|.+.+++|.++.+      .+++.+...++..+++++.|+++||+|||+++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (406)
T PRK11551         13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            344555666778888888888999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      .++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+  
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--  164 (406)
T PRK11551         87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG--  164 (406)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence            9999998888889999999999999999988777665 8999999999999999999999999999999999988876  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                                    ..+|+..+.+.+++.++. ++...++||++++..++.++++.  +.       ..  +     ...
T Consensus       165 --------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~-------~~--~-----~~~  214 (406)
T PRK11551        165 --------------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--AP-------VL--R-----ALF  214 (406)
T ss_pred             --------------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--hh-------hH--H-----HHh
Confidence                          445555556655444433 33445578765432211100000  00       00  0     000


Q ss_pred             ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      +..+.+..+......++..........+.|.|+.+      .|+++.+++.+.+...++.+++++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~~~  275 (406)
T PRK11551        215 GEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSLLI  275 (406)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHHHH
Confidence            00111223333333444444455666677877765      68899999999988888777665543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.93  E-value=2.3e-24  Score=195.79  Aligned_cols=256  Identities=13%  Similarity=0.121  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      .++.++...++..++........+.+.++++.+..+      .+++.+.+.+++.+..+++|+++||+|||++++++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            345566777777776655666666778889988888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (351)
                      .+++.+++.+..+.   ++.|+++|++.+...|. .+++.|++|+++|+++.++.+....+|.++||.++|.+.+     
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----  149 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----  149 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            88888777666554   77899999999888886 9999999999999999999999999999999999999986     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccc
Q 018727          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (351)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (351)
                                 . .|+.++.+.+...++..+..+.+||++++++..+.+.....+       +.       ...++.+++
T Consensus       150 -----------~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~~l~~  203 (393)
T PRK11195        150 -----------P-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLR-------DF-------FHACRVLWR  203 (393)
T ss_pred             -----------H-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHH-------HH-------HHHHHHHHh
Confidence                       1 144444544444444445556778765332211111000000       00       011245677


Q ss_pred             ccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      +|.++.......+...........++.|+++.     +|+++.+.|.+.+..+++.+++.+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~~  260 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAGA  260 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHHH
Confidence            77776655554444455555666677777766     7899999999999999888776554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.93  E-value=5.5e-24  Score=192.83  Aligned_cols=236  Identities=12%  Similarity=0.086  Sum_probs=180.5

Q ss_pred             CchHHHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH
Q 018727           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  116 (351)
                      ..++.++..++..++.........+..+.+.+ ++|+|.+|      .+++.+++.+++.++.++.|++.||+|.|+++.
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~  104 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTV  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            34566777777777888888888998888876 89999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh-----hhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          117 MGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ++.+++.+..++.+++     ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..+++++..
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999888876     79999999999999985545556889999999999999999997666677766555554


Q ss_pred             hhc-----CCCCCCCCccccccccc----CccchhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhh
Q 018727          192 FLA-----QPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS  261 (351)
Q Consensus       192 ~l~-----~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (351)
                      .+.     .       .+||+....    ..+|+....+..+..++..+. ++.+++.+. .   +.             
T Consensus       185 ~~i~~~l~~-------~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~---~~-------------  240 (462)
T PRK15034        185 LVIFVPVFA-------FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S---RA-------------  240 (462)
T ss_pred             HHHHHHHHH-------HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c---cc-------------
Confidence            332     3       345544332    334666666655555554433 333333221 0   00             


Q ss_pred             hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 018727          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP  312 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                               ..+...+.+|+|..|...+.+++.+....++..++|.|+.+.
T Consensus       241 ---------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~  282 (462)
T PRK15034        241 ---------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ  282 (462)
T ss_pred             ---------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     011344578999999999999999999999999999987764

>PRK03699 putative transporter; Provisional

Probab=99.93  E-value=1e-23  Score=191.88  Aligned_cols=261  Identities=11%  Similarity=0.122  Sum_probs=194.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      ++..+.+++..++.........+.+|.+.+++|++..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455666777777777788889999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      ++.+++.++.+++++++.+++.|++.|++.+...+ ...++.|++|+++|+++++..+....+|..++|.+.+.+.+.  
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  157 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--  157 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            99999999999999999999999999998777665 488899999999999999999889999999999998877641  


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
                                   ..+|+.++.+.++..++..+..++ .+.|+.++++++  + .              +. .   .++ 
T Consensus       158 -------------~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~-~--------------~~-~---~~~-  201 (394)
T PRK03699        158 -------------SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPK--A-D--------------KP-V---AKE-  201 (394)
T ss_pred             -------------cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcc--c-c--------------Cc-c---ccc-
Confidence                         234555556655555444333332 221111100000  0 0              00 0   011 


Q ss_pred             ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF  349 (351)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~  349 (351)
                      ..++.++...+..++.......+..+.|.|+.+.     +|+++.+.+.+.+...++..++++..     |+++|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  272 (394)
T PRK03699        202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR  272 (394)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            1235566666666666677778888999998765     78999999998888777766655443     555544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.92  E-value=7.1e-25  Score=208.84  Aligned_cols=284  Identities=16%  Similarity=0.159  Sum_probs=208.0

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+++..+...+..+...+.++.+.++|+++..+      .|++.+.+.++++++.++.++++||+|||+.+.++.+++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            334455566666678888889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh---------------------------------------------------hHHHHHHHHHHhhhhcccch
Q 018727          125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG  153 (351)
Q Consensus       125 ~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~  153 (351)
                      +.+++++.+                                                   .+..++++|+++|+|.+...
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            998887653                                                   24567889999999988887


Q ss_pred             hH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc---------ccccccccCccchhHHHHHH
Q 018727          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL---------FSSESLFGKFPYFLPCLCIS  223 (351)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---------~gw~~~~~~~~~~~~~~~~~  223 (351)
                      +. .+++.|++|+++|++++++++.+..+|.++|+++++++.+....|+..         .+|||   ..+||..|++.+
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW---iGaWwl~Fli~g  267 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW---IGAWWIGFLICG  267 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH---HHHHHHHHHHHH
Confidence            75 999999999999999999999999999999999999988632211100         01111   224788888888


Q ss_pred             HHHHHHHHHHhccccccccCCCCCccchhhHHHhhh----hhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHh
Q 018727          224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  299 (351)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  299 (351)
                      ++.++..+.++++|++.+....+.+.+..+.+..+.    ...+..+.........+++++||.++...+..++......
T Consensus       268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~  347 (633)
T TIGR00805       268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN  347 (633)
T ss_pred             HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            777776666667776543221110000000000000    0000000011122346678999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhh-HHhhhcc
Q 018727          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTK-VDTHILP  342 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~-~~~~~~~  342 (351)
                      ++..++|.|+++.     +|+++.+++.+.+...+. .+++.+.
T Consensus       348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~~l  386 (633)
T TIGR00805       348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGYLI  386 (633)
T ss_pred             HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHHhh
Confidence            9999999999887     899999999998876653 3344333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=2.6e-24  Score=194.24  Aligned_cols=247  Identities=13%  Similarity=0.105  Sum_probs=181.8

Q ss_pred             cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (351)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ..+...+..|.+.+++|++..+      .+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~   91 (377)
T TIGR00890        18 YVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL   91 (377)
T ss_pred             HHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence            3556778899999999999999      9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (351)
                      +.+++.|++.|++.+...+ ....+.|++| ++|+++.++...+.++|..+++.+.+.+.+                ..+
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~  154 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN----------------LEG  154 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh----------------ccc
Confidence            9999999999998876555 4777888887 579999999999999999887777666665                345


Q ss_pred             chhHHHHHHHHHHHHHHH-HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHH
Q 018727          215 YFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  293 (351)
                      |+..+.+.++..++..+. .++++++++.+..++++.+                  ......++.++++.++...+..++
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  216 (377)
T TIGR00890       155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLSFFL  216 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHHHHH
Confidence            566666666655554433 3444443322111100000                  001123456778888777666666


Q ss_pred             HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF  349 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~  349 (351)
                      ..........+.+.|.++      ++.+..+.+.+.+...++.+++++..     |+++|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  271 (377)
T TIGR00890       217 NAVSGLLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK  271 (377)
T ss_pred             HhHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            655555555666666544      67888888888888877776655443     555554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.92  E-value=1.7e-23  Score=189.70  Aligned_cols=249  Identities=15%  Similarity=0.154  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.++.++...++.........+.+|.+.+++|.|..+      .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~   79 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888899999999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +.+++..+++.+++++.+++.|+++|++.+...+. ...+.+..++++|+++++.++.+.++|..+||.+++.+.+.   
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  156 (381)
T PRK03633         80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---  156 (381)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            99999999999999999999999999998877664 67777889999999999999999999999999999988761   


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccc
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (351)
                          ..|     ...|..    ......+..+.....++++  .  +++                      +..+.++.+
T Consensus       157 ----~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~--~--~~~----------------------~~~~~~~~~  197 (381)
T PRK03633        157 ----LMS-----VLPWVT----GLVLAAILPLLFTRILNQQ--A--ENH----------------------DSTSIWPML  197 (381)
T ss_pred             ----ccc-----hHHHHH----HHHHHHHHHHHHhcccCCC--C--CCC----------------------CCCCHHHHH
Confidence                111     111221    1111111111111122210  0  000                      011234456


Q ss_pred             cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      |+|.++......+..........+++|.|+++      .|.++..+|.+.+...++.+++++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~~~  255 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQWPI  255 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            77777665444444444455666778888765      58888899998888888777766553

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.1e-25  Score=196.76  Aligned_cols=276  Identities=18%  Similarity=0.144  Sum_probs=206.4

Q ss_pred             CCCCCchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChH
Q 018727           34 TKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (351)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~  113 (351)
                      .....+++.+..+++..+++.++.+.+....+.+.+.+|++++.      .|++.+.+.+.+.+++|+.|+++||+.||+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~   99 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKR   99 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence            34455667777889999999999999999999999999999999      999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      ++.+|..++.++.+.++++..+|+++++|.+.|+|.+.+.++ +.+++|.+|.++|++++++++.+..+|..+|.+++..
T Consensus       100 v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  100 VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            999999999999999999999999999999999999998885 9999999999999999999999999999999999998


Q ss_pred             hcCCCCCCCCccc-ccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727          193 LAQPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (351)
Q Consensus       193 l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      +.+       ..+ ||+.|         ...+++.++ .++..++++|+.+...++.+...+.           ..+...
T Consensus       180 va~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts  232 (493)
T KOG1330|consen  180 VAS-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTS  232 (493)
T ss_pred             ecc-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccc
Confidence            887       223 44333         344444444 4455666777665322221111100           000111


Q ss_pred             ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcccc
Q 018727          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPFK  344 (351)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~  344 (351)
                      ..+..+.+.+++.+....+.+....+...++.-+.|.+.......  .|++..+..++.++...++.++.+.++
T Consensus       233 ~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl~Gg  304 (493)
T KOG1330|consen  233 VWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVLFGG  304 (493)
T ss_pred             hHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhheehH
Confidence            223334445656665555666666666666655555554433222  346666677777777777777776664

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.3e-23  Score=192.12  Aligned_cols=250  Identities=18%  Similarity=0.166  Sum_probs=188.6

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+.+..++..+....+.+.+|.+.+++|.+..+      .++..+.+.+++.+++++.|.++||+|||+++.++..+..+
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            444555566667888888999999999999988      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (351)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (351)
                      +.++...+++++.+++.|++.|++.+...+. ..++.|.+|+++|++..++......+|..++|.+++.+.+       .
T Consensus        91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~  163 (406)
T PRK15402         91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------V  163 (406)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c
Confidence            9988889999999999999999988776664 8889999999999999999888888999999999999887       3


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccccc
Q 018727          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (351)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  282 (351)
                      .+         |+.++.+.++..++..+ .....||+++...++.+  .                 .+....++.++++|
T Consensus       164 ~~---------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~  215 (406)
T PRK15402        164 LP---------WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS--L-----------------KELGRDYKLVLKNR  215 (406)
T ss_pred             cC---------ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc--H-----------------HHHHHHHHHHHcCc
Confidence            34         44444555555444433 34456665432111000  0                 00111345678888


Q ss_pred             chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      .++...+..++.......+..+.|.|+.+.     +|+++.+.+.......++.+++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~  268 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGN  268 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH
Confidence            888877777666666666666778776654     68888888887666555554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.92  E-value=1.3e-23  Score=191.27  Aligned_cols=261  Identities=16%  Similarity=0.251  Sum_probs=195.5

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      +++.++.+.....+..+..+...|.+|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~   79 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG   79 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence            345555555566666677778888999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      .++..++.+++...++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..+|..++|.+++.+.+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--  157 (394)
T PRK11652         80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--  157 (394)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999988888999999999999999987776664 7788999999999999999999999999999999999887  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                                    ..+|+.++.+.++..++. .+..++.||+++.+.++    ++                  ....++
T Consensus       158 --------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------~~~~~~  201 (394)
T PRK11652        158 --------------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR----TR------------------VLASYR  201 (394)
T ss_pred             --------------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch----hH------------------HHHHHH
Confidence                          445555556655544433 33445667754321110    00                  011234


Q ss_pred             ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-cccccc
Q 018727          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-FKIDYR  348 (351)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-~~~~~r  348 (351)
                      ..+++|.++..++..+........+....+.++.+.     +|+++.+.+.+.....++.+++... .++.+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  269 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKR  269 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777655555555544555555666666654     7889999998887777777665443 455554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.92  E-value=1.9e-23  Score=192.45  Aligned_cols=270  Identities=16%  Similarity=0.119  Sum_probs=177.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHH-HHH-----HHHHHHhhhhhhhhhhhhcChHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG-SSF-----MFGRALTSVFWGLVADRYGRKPV  114 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~Grr~~  114 (351)
                      +....+++..+++.++...+++..|.+.++++.++.+      .+.+. +..     .++..+++++.|+++||+|||++
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            4455788899999999999999999999999988776      44332 222     23335788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHH
Q 018727          115 IIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (351)
                      ++.+.++..++.++++++++++        .+++.|+++|++.+...+ ...+++|++|+++|++++++.+...++|..+
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~  168 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF  168 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999998876        468899999999888666 4889999999999999999999888888888


Q ss_pred             HHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhh
Q 018727          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK  265 (351)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (351)
                      ++.+++.+.....++       .. ..++||.++++..+...+..+.....||+++.        . . ++       . 
T Consensus       169 g~~~g~~l~~~~~~~-------~~-~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~--------~-~-~~-------~-  222 (434)
T PRK15075        169 AALLGYLLNQWLSPA-------QM-AEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF--------L-A-RK-------H-  222 (434)
T ss_pred             HHHHHHHHHHhCCHH-------HH-hccchHHHHHHHHHHHHHHHHHHHhcCCCHHH--------H-H-hh-------h-
Confidence            888877664211000       00 03456666665443322222222222221100        0 0 00       0 


Q ss_pred             hhhhcccCcccccccccchHHH-HHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc---
Q 018727          266 EEEGREATPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL---  341 (351)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~---  341 (351)
                        +.+....+++..+++..+.. +...++..........+.|.|+++.     +|++..+.+.+.....++.+++.+   
T Consensus       223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g  295 (434)
T PRK15075        223 --RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLPIGG  295 (434)
T ss_pred             --ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00001112223344443332 2333334444556677788888765     688888888877776666655433   


Q ss_pred             --cccccccc
Q 018727          342 --PFKIDYRF  349 (351)
Q Consensus       342 --~~~~~~r~  349 (351)
                        ..|+++|+
T Consensus       296 ~l~Dr~g~r~  305 (434)
T PRK15075        296 ALSDRIGRRP  305 (434)
T ss_pred             HHHHHhcchH
Confidence              33666654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.92  E-value=6e-24  Score=184.35  Aligned_cols=260  Identities=14%  Similarity=0.131  Sum_probs=210.1

Q ss_pred             CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      ...+.++..++......+......+..+.+.+++++|+.|      .+++.++..+...+..++.|.+.||+|.|++..+
T Consensus        11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~   84 (417)
T COG2223          11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTIL   84 (417)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHH
Confidence            3446666667777777778888888889999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh---hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          118 GTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      +.++..+-++..+++.   +++++++++++.|++.+.+.+...+++++||+|++|.++|++. ++++|..+..+++..+.
T Consensus        85 s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223          85 SMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence            9999999888888764   4569999999999999999888999999999999999999999 88999988888888777


Q ss_pred             CCCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (351)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      .       ..|+.      .|+....+..+..++ .++.++.+.+.++.+...++.                     .+.
T Consensus       164 ~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~---------------------~~~  209 (417)
T COG2223         164 V-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ---------------------LPA  209 (417)
T ss_pred             H-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc---------------------chh
Confidence            6       23310      145444444444444 344455555555432221110                     003


Q ss_pred             cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ..+.++++++.|.+.+.|+..+....++..++|.|+.+.     ++.++..+|.......+...+.+..+
T Consensus       210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~Rp~G  274 (417)
T COG2223         210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALARPLG  274 (417)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHhcc
Confidence            456678899999999999999999999999999999998     99999999999888888888877665

>PRK11043 putative transporter; Provisional

Probab=99.92  E-value=2.4e-23  Score=190.01  Aligned_cols=245  Identities=17%  Similarity=0.207  Sum_probs=186.5

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+.....+..+..+.+.|.+|.+.+++|.++.+      .+++.+++.++..++++++|+++||+|||+++..+.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   83 (401)
T PRK11043         10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFAL   83 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHH
Confidence            334345555567778888889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (351)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (351)
                      +.+++.++++++.+++.|++.|++.+...+. .+++.|++|++++++..+..+....+|..++|.+++.+.+        
T Consensus        84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--------  155 (401)
T PRK11043         84 GSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN--------  155 (401)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            9988889999999999999999987766654 7889999999999999999888899999999999999987        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (351)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (351)
                              ..+|+..+.+..+..++..+..++++|++++++   +  ++                  ....+++++|+|.
T Consensus       156 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~------------------~~~~~~~~~~~~~  204 (401)
T PRK11043        156 --------HFGWQAIFATLFAITLLLILPTLRLKPSKKARK---Q--SQ------------------DALTFKQLLKSKT  204 (401)
T ss_pred             --------cCChHHHHHHHHHHHHHHHHHHHHcCCCCCccc---c--ch------------------HHHHHHHHHcChh
Confidence                    445555556666665555555555555432110   0  00                  0113455677777


Q ss_pred             hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      ++...+...+.......+..+.|.++++      +|+++.++|.......++.+++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~  255 (401)
T PRK11043        205 YLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGG  255 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH
Confidence            7765555555555556667777877654      68899888887766655555543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=1.1e-23  Score=196.23  Aligned_cols=173  Identities=24%  Similarity=0.280  Sum_probs=142.2

Q ss_pred             HHHHHHhhccccchhhhHHHHHHhhccc--------ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .+..++..++...+.+..+.+..+++.+        ..+      .+++.+++.++..+++++.|+++||+|||+++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~  107 (481)
T TIGR00879        34 AIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLII  107 (481)
T ss_pred             HHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHH
Confidence            3344556667777888888888887777        455      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh---h
Q 018727          119 TASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---G  191 (351)
Q Consensus       119 ~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~  191 (351)
                      .++..++.+++.+.   .+++.+++.|++.|++.+...+. ..+++|++|+++|++++++.+.+..+|..+++.++   .
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~  187 (481)
T TIGR00879       108 ALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV  187 (481)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999888887543   34568999999999998887775 89999999999999999999999999999999998   5


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      ...+                ..+|+.++.+.++..++.++..+++||+++
T Consensus       188 ~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~  221 (481)
T TIGR00879       188 SLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPR  221 (481)
T ss_pred             cCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            4444                445666667766666666666777888764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.91  E-value=3.3e-23  Score=188.55  Aligned_cols=250  Identities=21%  Similarity=0.217  Sum_probs=184.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      ......+....+.....+.+|.+.+++|.+..+      .++..+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence            344455555666667778899999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (351)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (351)
                      +..++..+++.+.+++.|++.|++.+...+ ...++.|.+|+++|+++.++.+....+|..++|.+++.+.+        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--------  152 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--------  152 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            999888899999999999999998877666 48999999999999999999999999999999999988876        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccccc
Q 018727          204 FSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (351)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  282 (351)
                              ..+|+..+.+.++..++. ++..+.+||+++++.+++   ...                  .+..++.++++
T Consensus       153 --------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~  203 (392)
T PRK10473        153 --------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA---SSK------------------PRENSESLLNR  203 (392)
T ss_pred             --------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc---cch------------------HHHHHHHHhCH
Confidence                    344555555655544443 334555677543221100   000                  00122346677


Q ss_pred             chHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      .++...+...+.......+..+.|.++.+.     +|+++.+.+.+....+++.+++++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~~~  258 (392)
T PRK10473        204 FFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVSFS  258 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            666554444444444444555556665544     7889999998888877777665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.91  E-value=6.6e-23  Score=191.47  Aligned_cols=188  Identities=15%  Similarity=0.099  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhh--------cccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK  112 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  112 (351)
                      +..+...+..+..+++...+++..|.+.+++        +.+..+      .+++.+++.++.+++++++|+++||+|||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            4445666777888889999999889888877        666666      89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHH
Q 018727          113 PVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAW  179 (351)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~  179 (351)
                      ++++++.++..++.+.++++            +.+..+++.|+++|++.|...+. .++++|++|+++|++++++.+.+.
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~  165 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence            99999999988887766652            23567889999999998887774 999999999999999999999999


Q ss_pred             HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccccccc
Q 018727          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (351)
Q Consensus       180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (351)
                      .+|.++++.+++.+.......        ....++||.++.+.++..++..+..+++||++++
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~~--------~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~  220 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDAS--------WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY  220 (479)
T ss_pred             HHHHHHHHHHHHHHhccCccc--------ccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence            999999988877665311100        0014566777777777666666667788998754

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=5.4e-23  Score=189.46  Aligned_cols=277  Identities=16%  Similarity=0.135  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHH-HHHhh--cccccccchhhh-hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  116 (351)
                      +.+...++..+++.++...+....|. +.+++  +.++..   +.. .....++..++..+++++.|+++||+|||+++.
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            44556667888888888887777764 44554  454432   111 111223455677899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727          117 MGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  187 (351)
                      .+.++++++.+++++++++.        .+++.|+++|++.|...+ ...+++|++|+++|++..+..+.+..+|..+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876        588899999999888766 489999999999999999999999999999988


Q ss_pred             HhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhh
Q 018727          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (351)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (351)
                      .+...+......+        .+..++||.++++.++..++........||++++...+.+.             ++   
T Consensus       179 ~~~~~l~~~~~~~--------~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~-------------~~---  234 (438)
T PRK09952        179 GLVSLISMMTTDE--------QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ-------------AA---  234 (438)
T ss_pred             HHHHHHHHhCCHH--------HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc-------------cc---
Confidence            7776654311100        01145677777777666554444444456654321110000             00   


Q ss_pred             hhcccCcccccccccchHHHHH-HHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhc
Q 018727          268 EGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HIL  341 (351)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~  341 (351)
                      .+......+.++++|+.+.... ..++..........+.+.|+.+.     +|++......+....++..++     +.+
T Consensus       235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~~~~g~l  309 (438)
T PRK09952        235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTIPCFAWL  309 (438)
T ss_pred             ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000011123456666555433 33444445555667788787665     677766444333333333322     445


Q ss_pred             cccccccc
Q 018727          342 PFKIDYRF  349 (351)
Q Consensus       342 ~~~~~~r~  349 (351)
                      ..|+++|+
T Consensus       310 ~Dr~grr~  317 (438)
T PRK09952        310 ADRFGRRR  317 (438)
T ss_pred             HHHhCchH
Confidence            55777765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.91  E-value=1.3e-23  Score=190.25  Aligned_cols=244  Identities=20%  Similarity=0.274  Sum_probs=186.4

Q ss_pred             ccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh
Q 018727           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (351)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +......|.+|.+.+++|.++.+      .+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++...++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~   78 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT   78 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34456678999999999999999      999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (351)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (351)
                      ++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+                .+
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------~~  142 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------------WF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence            999999999999988777664 8899999999999999999999999999999999999987                44


Q ss_pred             cchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHH
Q 018727          214 PYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  292 (351)
                      +|+.++.+.++..++. ++..+++||+++.+++++.  +.+                +.....++.++++.++..++..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        143 SWHAIFWVLALAAILAAALVFFFIPETLPKERRQPF--HLR----------------TTIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCC--ChH----------------HHHHHHHHHHcChHHHHHHHHHH
Confidence            5555556655555444 3344566765432211100  000                00112345677888777666665


Q ss_pred             HHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      +.......+..+.|.++.+.     +|+++.+.|.+.....++.+++++..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~  250 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTIIN  250 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555556555554     68899999999998888776655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=1.2e-23  Score=194.64  Aligned_cols=263  Identities=11%  Similarity=0.024  Sum_probs=180.1

Q ss_pred             HHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHH
Q 018727           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~  127 (351)
                      +.............+.+|++.++ |++..+      .+++.+...++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus        36 ~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~  108 (452)
T PRK11273         36 FGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML  108 (452)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHH
Confidence            33334444444456677888877 999999      99999999999999999999999999999999999999988888


Q ss_pred             Hhhhh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHH-HHHHhhhhhcCCCCCCC
Q 018727          128 LFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKYP  201 (351)
Q Consensus       128 ~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~  201 (351)
                      ++++.    .+++.+++.|++.|++.+...+ ....+.|++|+++|++++++++.+..+|.. .+|+++..+..      
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------  182 (452)
T PRK11273        109 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------  182 (452)
T ss_pred             HHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence            77765    3678889999999998777665 477889999999999999999999998874 45554433332      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc-ccccc
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLL  279 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  279 (351)
                                ..+|+..+++.++..++ .++..+++||+++....++++ +.. ++.++...+.++.+.+.... ...++
T Consensus       183 ----------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (452)
T PRK11273        183 ----------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIE-EYK-NDYPDDYNEKHEQELTAKQIFMQYVL  250 (452)
T ss_pred             ----------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChh-hhh-hccccccccccCCCccHHHHHHHHHH
Confidence                      22455555665554444 345566678766532111110 000 00000000000000000001 12367


Q ss_pred             cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      |++.+|...+..++.+........++|.|+++.     .|++..+++.......++.+++.
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~  306 (452)
T PRK11273        251 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT  306 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence            889999888888887777778888999999876     68888888887777666655543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=7.4e-23  Score=189.33  Aligned_cols=275  Identities=14%  Similarity=0.072  Sum_probs=188.8

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      |..+..+.+...........+....|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   91 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG   91 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence            33333444444433334455677889999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHH-HHHHhhhhcccch-hHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      ++..++.++++++++++.+++ .|++.|++.+... +...++.++++ ++|+++.++.+.+..+|..++|.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~--  168 (455)
T TIGR00892        92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE--  168 (455)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH--
Confidence            999999999889999888765 4689999877653 45778889986 789999999999999999999999999987  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc-ccccccCCCCCcc-chhhHHHhhhhhhhhhhhhhcccCcc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDS-CDVSYDALESASAEVKEEEGREATPK  275 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                                    .++|+.++.+.+++.++..+..+++ ++.+.+...+.++ .....+...+........+...+...
T Consensus       169 --------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (455)
T TIGR00892       169 --------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLD  234 (455)
T ss_pred             --------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcc
Confidence                          4455555566666555443333333 3221110000000 00000000000000000000011112


Q ss_pred             cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .+++++|+++..++..++..........+++.|..+      .|++..+++.++++.+++.+++++..
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~~~  296 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARPSC  296 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788988887777777777767777788888765      68899999999999998888765443

>TIGR00897 2A0118 polyol permease family

Probab=99.91  E-value=8.2e-23  Score=186.41  Aligned_cols=258  Identities=12%  Similarity=0.113  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.+...+++.++.....+...++++.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~   86 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL   86 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4455666666666677666777787788899999999      9999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhh---h-hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHH-HHHHHhhhhhc
Q 018727          121 SVVIFNTLFG---L-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA  194 (351)
Q Consensus       121 ~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~  194 (351)
                      +.+++.+++.   . .++++.+++.|++.|++.+...+ ....+.+.+|+++|++++|+.+.+.++|. .++|.+++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888765442   3 35788888999999998766555 47788899999999999999999999997 68999998888


Q ss_pred             CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc
Q 018727          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (351)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
                      +       .+||+..+    |+..+..    .+..++..+..++.++....+++  + +              ..+..+.
T Consensus       167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~-~--------------~~~~~~~  214 (402)
T TIGR00897       167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQTR--E-K--------------FSELGKA  214 (402)
T ss_pred             c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCcccccCC--c-c--------------hhhHHHH
Confidence            7       34433221    2222211    11122223333432211100000  0 0              0000112


Q ss_pred             ccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      +++++|+|.++...+..++.......+.++.|.|+++      +|+++.+.+.+.+...++..++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~~  276 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNVI  276 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHHH
Confidence            3467889999888777777777778888889988765      6888888888888777776665444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.91  E-value=2.7e-23  Score=194.90  Aligned_cols=204  Identities=16%  Similarity=0.121  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      ++.+..+.+..+..+++....+...|.+..++..++. ...+...+++.+...++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKG-PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3444466777888888888888888877664311110 001122789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhh------HHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          120 ASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      ++..++.++++++++      ++.+++.|++.|++.|...+ .+.+++|++|+++|++++++.+....+|..+++.++..
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888877654      78899999999999888766 59999999999999999999999999999999988876


Q ss_pred             hcCCCCC-CCCcc-----ccccc-ccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727          193 LAQPAEK-YPNLF-----SSESL-FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (351)
Q Consensus       193 l~~~~~~-~~~~~-----gw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (351)
                      +...... .....     .++.. ...++||.++.+.++..++.++..+++||+|++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~  232 (502)
T TIGR00887       174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA  232 (502)
T ss_pred             HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5431110 00000     00000 11357888888888877777777889999998743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=1.7e-23  Score=200.20  Aligned_cols=188  Identities=19%  Similarity=0.243  Sum_probs=162.4

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  123 (351)
                      +.+.++.+..++....+...+|.+.++++++..+      .+++.+++.++.+++++++|+++||+|||+++++++++.+
T Consensus       170 ~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~  243 (742)
T TIGR01299       170 FVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG  243 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3455556666677777888899999999999988      9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (351)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (351)
                      ++.++++++++++.++++|++.|++.|...++ .++++|++|+++|++.+++++.++.+|.++++.++..+..       
T Consensus       244 i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~-------  316 (742)
T TIGR01299       244 FFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP-------  316 (742)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            99999999999999999999999998776664 9999999999999999999999999999999999887775       


Q ss_pred             ccccccc----ccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727          203 LFSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (351)
Q Consensus       203 ~~gw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (351)
                      .+||+..    +...+||..+++.++..++.++..+++||+|++..
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~  362 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL  362 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            5566432    22457888888888887777778889999998743

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=5.6e-23  Score=187.02  Aligned_cols=275  Identities=18%  Similarity=0.230  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.+.......+...+......+..|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~   90 (398)
T TIGR00895        17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL   90 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence            3444555566666677777788889999999999988      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +..++.++....++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----  166 (398)
T TIGR00895        91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP----  166 (398)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh----
Confidence            99999988888999999999999999998877664 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchhHHHHHH-HHHHHHHHHHhccccccccCCCCCccc-hhhHHHhhhhhhhh-----hhhhh--c
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCIS-LFAFGVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEV-----KEEEG--R  270 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--~  270 (351)
                         ..||+..+         .+.+ +..+...+...++||+++....++++. .+..++......++     ++++.  +
T Consensus       167 ---~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (398)
T TIGR00895       167 ---VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQG  234 (398)
T ss_pred             ---cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccc
Confidence               44555444         4443 333334445566777654322211111 00001100000000     00000  0


Q ss_pred             ccCc-ccccccc---cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          271 EATP-KKSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       271 ~~~~-~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .... .+.++++   +..+...+..++..........+.|.+..+      .++++.+++.+.+...++.+++.+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~  305 (398)
T TIGR00895       235 TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSLSLAATGGALFNFGGVIGSIIF  305 (398)
T ss_pred             hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011 1112222   222333344444445555556666744443      68888899988888887777655443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.1e-23  Score=189.09  Aligned_cols=244  Identities=16%  Similarity=0.239  Sum_probs=195.4

Q ss_pred             hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhhh
Q 018727           70 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGS  147 (351)
Q Consensus        70 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~  147 (351)
                      +++++..+      .+++.+.+..|+.+++++.|++.||+|-|+++..+.++.+++.++...+.  +++.+++.|+++|+
T Consensus        67 ~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   67 EYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL  140 (466)
T ss_pred             eecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence            56667777      99999999999999999999999999999999999999999999988764  45678999999999


Q ss_pred             hcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHH
Q 018727          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  226 (351)
Q Consensus       148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  226 (351)
                      +.|...|+ ..+.+.|.|++||++..++...+..+|.+++-+++|++.+       .        ..||+.++++.++.+
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-------s--------~~GW~sifY~~g~~g  205 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-------S--------SLGWPSIFYVFGIVG  205 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-------c--------CCCCchHHHHHHHHH
Confidence            99987775 9999999999999999999999999999999999999998       2        144555557877777


Q ss_pred             HHHHHHHhc-cccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHH
Q 018727          227 FGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  305 (351)
Q Consensus       227 ~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (351)
                      ++..++++. ..|+|.+++.-.   +++++.+++...+.+. +.+...+++++++++.+|...+..+..+.....+..+.
T Consensus       206 ~i~~~~w~~~~~d~P~~h~~is---~~El~~I~~~k~~~~~-~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~  281 (466)
T KOG2532|consen  206 LIWFILWFLFYSDSPSKHPNIS---EKELKYIEKGKSEAHV-KKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL  281 (466)
T ss_pred             HHHHHHHHHHhcCCcccCCCCC---HHHHHHHHhccccccc-CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            776555444 445544422211   1111222222221111 11156789999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          306 SLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       306 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      |.|+.+.     +|++..+.|++.++..+...+..+..
T Consensus       282 PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~~~  314 (466)
T KOG2532|consen  282 PTYLKEV-----LGFDVRETGFLSALPFLAMAIVKFVA  314 (466)
T ss_pred             hHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHHHH
Confidence            9999998     99999999999999888887755443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1.6e-22  Score=189.71  Aligned_cols=181  Identities=14%  Similarity=0.199  Sum_probs=152.6

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .++.+..+++..++..++.....+.+|.+.+++|.+..+      .+++.+.+.+++.++.++.|+++||+|||+++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   91 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS   91 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            345566778888888888888999999999999999998      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      .++.+++.++.++.++++.+++.|++.|++.+...+ ...++.|.+|+++|++++++...+..+|..++|.+.+.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--  169 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP--  169 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999998777655 48899999999999999999999999999999999999987  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                                    .++|+..+.+..+..++.++.....||+++
T Consensus       170 --------------~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~  199 (496)
T PRK03893        170 --------------VWGWRALFFIGILPIIFALWLRKNLPEAED  199 (496)
T ss_pred             --------------cCCHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence                          344455445544433333344445666543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.91  E-value=1.4e-22  Score=184.72  Aligned_cols=278  Identities=12%  Similarity=0.042  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      +..++...+..++..+...+.+|.+.+++|.+..+      .+++.+.+.+++.+++++.|++.||+|||+++.++.++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            45666777777888888899999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh---hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          123 VIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       123 ~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      +++.+++..   .++++.+++.|++.|+|.|...+. +.++.++.|+++|++.+++.+...++|..++|.+++.+.....
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~  158 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL  158 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            998877543   458899999999999998887774 8899999999999999999999999999999999988864210


Q ss_pred             CC-CCccccccc---------ccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhh
Q 018727          199 KY-PNLFSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (351)
Q Consensus       199 ~~-~~~~gw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (351)
                      .. ....-+...         -...+|+.++.+.+++.++..+...+.+.++.++ + +++                  +
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-~-~~~------------------~  218 (410)
T TIGR00885       159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-S-DAK------------------Q  218 (410)
T ss_pred             ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-c-ccc------------------c
Confidence            00 000000000         0013477777776665555443333322211110 0 000                  0


Q ss_pred             hcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-----c
Q 018727          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-----F  343 (351)
Q Consensus       269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-----~  343 (351)
                      .......++++|+|.++..++..+++.....+..++++.|..+..    .+.+....+...+....+..++++.     .
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~----~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~  294 (410)
T TIGR00885       219 ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI----PGMTAGFAANYNIGAMVIFFISRFIGTWLIS  294 (410)
T ss_pred             ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001112345678888888888888888888888888898876421    2344444444444433344444444     3


Q ss_pred             ccccccc
Q 018727          344 KIDYRFF  350 (351)
Q Consensus       344 ~~~~r~~  350 (351)
                      |+++|++
T Consensus       295 r~~~~~~  301 (410)
T TIGR00885       295 YLAAHKV  301 (410)
T ss_pred             HcCHHHH
Confidence            6666653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.91  E-value=3.5e-23  Score=190.91  Aligned_cols=273  Identities=14%  Similarity=0.052  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      ++.+.+................|.+.+ +|.+..+      .+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            334444555555555556666777765 5999999      999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhhh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          123 VIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       123 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      +++.++.+..    .+++.+.+.|++.|++.+...+ ....+.|++|+++|++++++.+.+..+|+.++|.+.+...+. 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~-  180 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW-  180 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence            8888776653    4677788899999998877655 588889999999999999999999999999998887655431 


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                                    ..+|+..+++.++..++. ++..+++||+++....++.++. +.+..+...++.+.+.........
T Consensus       181 --------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  245 (438)
T TIGR00712       181 --------------FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY-RNDYPDDYNEKAEQELTAKEIFMQ  245 (438)
T ss_pred             --------------hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc-ccccccccccccccccchHHHHHH
Confidence                          234555556665555543 3455667776543211110000 000000000000000000000112


Q ss_pred             ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .++|++.++...+..++.+....+...+.|.|+++.     .|+++.+++.......+..+++++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~  307 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTLLC  307 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            467888898887777777777778888999999875     68899989988887777766655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=3.4e-23  Score=189.21  Aligned_cols=260  Identities=16%  Similarity=0.136  Sum_probs=201.5

Q ss_pred             hhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 018727           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT  141 (351)
Q Consensus        62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  141 (351)
                      +.+..+.+|.+....+      .+.+.+++.++++++.+++|.+.||++..+.+....+++++..++....+|++.+++.
T Consensus        67 a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ial  140 (495)
T KOG2533|consen   67 ASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIAL  140 (495)
T ss_pred             HHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3333455777777778      9999999999999999999999999999999988888888888778789999999999


Q ss_pred             HHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHH
Q 018727          142 RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL  220 (351)
Q Consensus       142 r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~  220 (351)
                      |++.|+.++...|. ..+++.||.+++|++.++++.++.++|+++|.+++..+.+.. +.....|||+.|         +
T Consensus       141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~-~~~~~~gW~~~F---------i  210 (495)
T KOG2533|consen  141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN-GSGGLAGWRWLF---------I  210 (495)
T ss_pred             HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc-CCCCcCCceeeh---------h
Confidence            99999998888885 899999999999999999999999999999999998876522 222256666665         6


Q ss_pred             HHHHHHHH-HHHHHhccccccccCCCCCccc-hhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhH
Q 018727          221 CISLFAFG-VTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  298 (351)
Q Consensus       221 ~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  298 (351)
                      +-+++.++ .+++++++|+.|....-.++++ ....++.++.+.+..+++ .++..+++.+++|.+|...+..++.....
T Consensus       211 I~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~vw~~~l~~~~~~lv~  289 (495)
T KOG2533|consen  211 IEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPGVWPFSLCYFFLKLVN  289 (495)
T ss_pred             HHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence            65555554 5567888998887542222111 111122222222222112 45566788899999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          299 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .++.+++|.|+.+.     .|++..++..+.....++++++.+..
T Consensus       290 ~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i~a  329 (495)
T KOG2533|consen  290 YGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLILA  329 (495)
T ss_pred             ccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHHHHH
Confidence            99999999999883     67888888888888887777765544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=7.7e-22  Score=178.16  Aligned_cols=268  Identities=21%  Similarity=0.207  Sum_probs=184.6

Q ss_pred             HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHH
Q 018727           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (351)
Q Consensus        68 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l  144 (351)
                      .+++|...++++.+...+.+.+++.+|.++|+++.|+++||+|||..+.++.++..++.++..+   .+++.+++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3456766666677888999999999999999999999999999999999988887777766654   5788999999999


Q ss_pred             hhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHH
Q 018727          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (351)
Q Consensus       145 ~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  223 (351)
                      .|+..|..... +.++.|+.|++.||......+.+..+|..++..++..-.-         |-     .-.|.+.+....
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il---------Gt-----~~~W~~l~~~~~  191 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL---------GT-----EDLWPYLLAFPL  191 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc---------CC-----CcchHHHHHHHH
Confidence            99998887775 9999999999999999999999999999999766532221         11     334677777888


Q ss_pred             HHHHHHHHHHhccccccccCCC-CCccchhh--HHHh----------hhhhhhhhhh--hhcccCcccccccccchHHH-
Q 018727          224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVS--YDAL----------ESASAEVKEE--EGREATPKKSLLKNWPLMSS-  287 (351)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~--~~~~----------~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-  287 (351)
                      +.+++.++...++||+|++... +.+++++.  .+..          +....+.+++  +.+...+.+++++++..+.- 
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            8888888899999999998544 22222221  1111          1111111111  11245567888998877664 


Q ss_pred             HHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc-----cccccccccC
Q 018727          288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL-----PFKIDYRFFL  351 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-----~~~~~~r~~l  351 (351)
                      .+...+...+++...+....|..+.+..  .|++..++-+.....++..++..+     +-|.+||.+|
T Consensus       272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~--aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl  338 (485)
T KOG0569|consen  272 LIGIVVSFAQQFSGINAIFFYSTSIFKT--AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL  338 (485)
T ss_pred             HHHHHHHHHHHhcCcceeHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            2333333334444433333344433222  567777766666666655554443     3489998764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.89  E-value=5.1e-22  Score=181.17  Aligned_cols=151  Identities=23%  Similarity=0.215  Sum_probs=131.8

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      .++.+..+.+..++..++.....+.+|. +.+++|.++.+      .+++.+++.+++.+++++.|+++||+|||+++..
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF   86 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence            3466777888888888888889999986 56789999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh--------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727          118 GTASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (351)
                      +.++.+++.+.+.++        .+++.+++.|+++|++.+...+. ..++.|++|+++|++++++.+.+..+|.+++|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  166 (399)
T PRK05122         87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP  166 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH
Confidence            988887766554432        25668899999999998887765 788899999999999999999999999999999


Q ss_pred             hhhhhcC
Q 018727          189 LGGFLAQ  195 (351)
Q Consensus       189 ~~~~l~~  195 (351)
                      +++.+.+
T Consensus       167 l~~~l~~  173 (399)
T PRK05122        167 LGVLLYH  173 (399)
T ss_pred             HHHHHHH
Confidence            9999987

>TIGR00896 CynX cyanate transporter

Probab=99.89  E-value=8.5e-22  Score=176.85  Aligned_cols=237  Identities=14%  Similarity=0.059  Sum_probs=180.4

Q ss_pred             cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (351)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ......+.+|.+.+++|.+..+      .+++.+++.++..++.++.|+++||+|||+++.++.++..++.+.+ ..++.
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~   87 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGT   87 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccH
Confidence            4466788999999999999999      9999999999999999999999999999999999988888877776 67888


Q ss_pred             HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (351)
                      +.+++.|++.|++.+...+. ..++.|++| ++|++++++.+....+|..+++.+++.+.+.       .+       .+
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-------~~-------~~  152 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH-------SG-------GH  152 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hh-------hh
Confidence            99999999999987776554 778888886 5799999999999999999999999888761       11       12


Q ss_pred             chhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHH
Q 018727          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  294 (351)
                      |+..+...++..++..  ..++|+.++++.+++                     .......++++|+|.++...+..++.
T Consensus       153 w~~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (355)
T TIGR00896       153 WQQALAWWALPALLAL--LAWIPQVRRRVAANQ---------------------TTTRLTPVRIWRSPLAWQVTVFFGLQ  209 (355)
T ss_pred             HHHHHHHHHHHHHHHH--HHHhhhhccccCCCC---------------------CCCCCCCchhhcCHhHHHHHHHHHHH
Confidence            4554444443332222  233454432111100                     00112355678888888777766666


Q ss_pred             HhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .........++|.|+++      .|+++.+.+.+.+...++.+++++..
T Consensus       210 ~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~~~  252 (355)
T TIGR00896       210 SGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASALLI  252 (355)
T ss_pred             HHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence            67777778888988865      68899999999999998888877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10054 putative transporter; Provisional

Probab=99.89  E-value=6.4e-22  Score=179.93  Aligned_cols=252  Identities=16%  Similarity=0.210  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      |.++.+....++.....+...+++|. +.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+++.++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            34556666777778888888888865 55679999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      ++.+++.++.++.++++.+++.|.+.|.+.+...++ ..+..|.+|+++|++++++.+...++|.+++|.+++.+.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---  157 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---  157 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999898888889999998888898888776666664 8899999999999999999999999999999999998863   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccc
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
                           .||         +.++...++..++.+ +..+++||+++.+++++   +                +   ....++
T Consensus       158 -----~g~---------~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~----------------~---~~~~~~  201 (395)
T PRK10054        158 -----QSI---------NLPFWLAAICSAFPLVFIQIWVQRSEKAIATET---G----------------S---VWSPSV  201 (395)
T ss_pred             -----hcc---------CcHHHHHHHHHHHHHHHHHHHHhccccccccch---h----------------h---hhhhhh
Confidence                 233         444455555544443 33344555432211000   0                0   011256


Q ss_pred             cccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      .+|+|.++...+..++..+....+..+.+.|....   .+.+.+....+.++...++.....+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~  261 (395)
T PRK10054        202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQ  261 (395)
T ss_pred             hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeeh
Confidence            78889988877777776666655656666665432   1256677778888887776555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.89  E-value=8.9e-22  Score=177.94  Aligned_cols=252  Identities=15%  Similarity=0.153  Sum_probs=177.6

Q ss_pred             HHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH-HHHHHHHH
Q 018727           48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF  125 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~  125 (351)
                      +..++..+..+...|.+|. +.+++|.++.+      .+++.+++.+...+.+++.|.++||+||||.++. +..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4466677777888888886 46789999999      9999999999999999999999999999887654 55566667


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhh--HhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (351)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (351)
                      .++++.+++++.+++.|++.|.+.+...+. ..+..|+.|+++|+..  .+......++|..++|.+++.+.+       
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------  150 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------  150 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence            777888899999999999888766666664 7788898887777754  577788889999999999999987       


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (351)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (351)
                               ..+|+.++.+.++..++..+ ..+.+||++++..++.+                       ....++.+++
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  198 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS  198 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence                     45566666776665555443 34457775432211100                       0012234566


Q ss_pred             cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhccccccccc
Q 018727          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPFKIDYRF  349 (351)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~~~~~r~  349 (351)
                      ++++......++.......+...+|.|+.+.     +|.++.+.+.+.+...+....     +.+..|+++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  266 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR  266 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence            7676655555554444445556677777654     688888888887766554433     33444666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=2e-22  Score=189.41  Aligned_cols=258  Identities=16%  Similarity=0.219  Sum_probs=176.4

Q ss_pred             hhHHHHHHhhccc---ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 018727           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (351)
Q Consensus        62 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (351)
                      +..+.+.+|++++   ..+      .+++.+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5667788899998   666      8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchh
Q 018727          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (351)
Q Consensus       139 ~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (351)
                      ++.|++.|++.+...+ ...++.|++|+++|+.+.++.+.+..+|.+++|.+++.+.+                   |+.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence            9999999999888666 49999999999999999999999999999999988765532                   455


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccCCCCCccchhh--HHHhhhhh----------h--hhhhhhhcccCcccccccccc
Q 018727          218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESAS----------A--EVKEEEGREATPKKSLLKNWP  283 (351)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~----------~--~~~~~~~~~~~~~~~~l~~~~  283 (351)
                      .+.+.++..++..+..+++||++++...+.+.+++.  .++..+.+          .  +.++.+.......++++++|.
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            566666666666666688999887543322222111  11110000          0  000001111235677888888


Q ss_pred             hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh--hhcccccccccc
Q 018727          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT--HILPFKIDYRFF  350 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~--~~~~~~~~~r~~  350 (351)
                      ++...+...+..+.........+.+...      ++.+......+.++..+...+  +.+..|+++|..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~  387 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLDLGN------LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYT  387 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc------cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            8776655544443333333233333222      455544444444433332221  334447777653

>PRK12382 putative transporter; Provisional

Probab=99.89  E-value=2.2e-21  Score=176.56  Aligned_cols=149  Identities=21%  Similarity=0.254  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.++.++...++..+..+...|.+|. +.+++|.+..+      .+++.+++.++..++++++|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM   88 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence            44555666667777777788888885 56789999999      999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHh---h-----hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          120 ASVVIFNTLF---G-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       120 ~~~~~~~~~~---~-----~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      +...++.+.+   +     ..++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+..+|..++|.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~  168 (392)
T PRK12382         89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG  168 (392)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence            7766654322   1     1357889999999999998876664 78889999999999999999999999999999999


Q ss_pred             hhhcC
Q 018727          191 GFLAQ  195 (351)
Q Consensus       191 ~~l~~  195 (351)
                      +.+.+
T Consensus       169 ~~l~~  173 (392)
T PRK12382        169 LLLHS  173 (392)
T ss_pred             HHHHh
Confidence            99887

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.89  E-value=3.1e-21  Score=176.51  Aligned_cols=182  Identities=26%  Similarity=0.434  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.+..+++..++..+..+...+.+|.+.+++|.+..+. ...+.+++.++..++..+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            44556677788888888888999999999999886541 11224888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (351)
                      +.+++.+++...++++.+++.|++.|++.+.......++.|.+|+++|+++.++.+....+|..++|.+++.+.+     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  167 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-----  167 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999988888888999999999999999766544457788899999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHH-HHhccccc
Q 018727          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET  239 (351)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~  239 (351)
                                 ..+|+..+.+.++..++..+ ..+++||+
T Consensus       168 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        168 -----------SYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             -----------HhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                       34455555655555444333 34445554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.89  E-value=1.7e-21  Score=177.36  Aligned_cols=242  Identities=19%  Similarity=0.237  Sum_probs=178.5

Q ss_pred             HHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  123 (351)
                      .+....++.....+...+.++. +.+++|.+..+      .|++.+...+...+.+++.|+++||+|||+++..+.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~   87 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRA   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHH
Confidence            3445566666666777777764 56789999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (351)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (351)
                      ++.+++...++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..+||.+++.+.+       
T Consensus        88 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-------  160 (400)
T PRK11646         88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-------  160 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            99999989999999999999999988777765 8899999999999999999999999999999999998873       


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727          203 LFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (351)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (351)
                                ++|+..+.+.++..++.. +..+..||.+..   +.+  +                  +....+++++++
T Consensus       161 ----------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~--~------------------~~~~~~~~~~~~  207 (400)
T PRK11646        161 ----------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVR--T------------------PVREGMTRVLRD  207 (400)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHhCCccccc---ccc--h------------------hhHHHHHHHHcC
Confidence                      234555555554444332 233444542110   000  0                  001134556778


Q ss_pred             cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT  338 (351)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~  338 (351)
                      |.++...+..+...........++|.|.++.      +.++.+++.+.+..++....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~g~l~~~~~~~~~~  258 (400)
T PRK11646        208 KRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI------AGSPSAVKWMYAIEACLSLT  258 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHhh------cCCchHHHHHHHHHHHHHHH
Confidence            8877655555444444444456678777663      44677888887777665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=2.9e-21  Score=175.01  Aligned_cols=249  Identities=16%  Similarity=0.126  Sum_probs=177.4

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH-HHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASV  122 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~-~~~  122 (351)
                      ..+.+..+...+......|++|.+.+++|.+..+      ++++.+++.+...++++++|.++||+||++...... ...
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~   80 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS   80 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3455667777777788999999999999999999      999999999999999999999999999854332211 111


Q ss_pred             HHH-HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727          123 VIF-NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (351)
Q Consensus       123 ~~~-~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (351)
                      .+. ...+..+++++.+++.|++.|.+.+...+. .++..|.  .++|++.+|......++|.+++|.+++.+.+     
T Consensus        81 ~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~-----  153 (382)
T TIGR00902        81 AIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG-----  153 (382)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            111 123446788999999999998876665564 6665553  4778999999999999999999999999998     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccc
Q 018727          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (351)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (351)
                        .+||         +..+.+..+..++.++.. .++|+++++.++++  +                +.......++++|
T Consensus       154 --~~g~---------~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~  203 (382)
T TIGR00902       154 --MFDE---------QNILAILTAGLAFMLIGF-LIKPTIPPKDAIPE--D----------------ESQGDSAFIALLK  203 (382)
T ss_pred             --HcCh---------hHHHHHHHHHHHHHHHHH-HcCCCCCCCccccc--c----------------ccccchhHHHHHc
Confidence              4444         444455443322222222 33333211111000  0                0011123567889


Q ss_pred             ccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc
Q 018727          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL  341 (351)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~  341 (351)
                      +|+++...+..++.......+..+.+.|+++      .|.++.++|.+++...++.++...
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~~  258 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIFA  258 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH
Confidence            9999999888888888888999999999876      699999999998877777666443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.88  E-value=4e-22  Score=182.83  Aligned_cols=253  Identities=14%  Similarity=0.080  Sum_probs=184.2

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .++...++..+......+.+|.+.++++.+..+      .+++.+...++..+++++.|+++||+|||+++..+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            344445556666677788889998898888888      99999999999999999999999999999999888777776


Q ss_pred             HHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          125 FNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       125 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      +.+..+.     .++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+...++|..+||.+++.+.+   
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---  171 (417)
T PRK10489         95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---  171 (417)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence            6554432     467888899999999987776664 8899999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccc
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
                                   ..+|+..+.+.++..++..+..+.+|++++++.++++  . . +              +....++.+
T Consensus       172 -------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~-~-~--------------~~~~~~~~~  220 (417)
T PRK10489        172 -------------AGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREH--P-L-R--------------SLLAGFRFL  220 (417)
T ss_pred             -------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccc--c-h-H--------------HHHHHHHHH
Confidence                         3344444455555555555556667765432211100  0 0 0              001123445


Q ss_pred             ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      +++|.++...+..++... ......++|.|..+.     +|+++...|.+.+..+++.+++.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~~~  279 (417)
T PRK10489        221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGALTS  279 (417)
T ss_pred             HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHHHH
Confidence            677776665544444332 345667788888776     78899999999998888887766554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.88  E-value=3.6e-21  Score=174.79  Aligned_cols=260  Identities=15%  Similarity=0.111  Sum_probs=174.6

Q ss_pred             HhhccccchhhhHHHHHHhhcc--cccccchhhhhHHHHH-----HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           52 CTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+.++.+......+.+.+++..  ++.+      .+...+     ...++..+++++.|+++||+|||+++..+.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~   77 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGI   77 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            3455556666666777776543  2333      333332     23344457899999999999999999999999999


Q ss_pred             HHHHhhhhhhHH--------HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          125 FNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       125 ~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.+++++++++.        .+++.|+++|++.+...+ ...+++|++|+++|++..+..+.+..+|.++++.++..+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~  157 (394)
T TIGR00883        78 GTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY  157 (394)
T ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888764        478899999999877666 48999999999999999999999999999999988776643


Q ss_pred             CCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (351)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      ..       +.... ..++|+.++.+.++..++..+.....||+++.+.++++                   +++...+.
T Consensus       158 ~~-------~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~  210 (394)
T TIGR00883       158 LL-------GDDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGPI  210 (394)
T ss_pred             hc-------CHHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCCH
Confidence            11       00000 14567777777665555554444455554322110000                   00112234


Q ss_pred             cccccccc--hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-----cccccc
Q 018727          276 KSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-----FKIDYR  348 (351)
Q Consensus       276 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-----~~~~~r  348 (351)
                      ++.+++++  ++......++..........+.|.|..+.     +|.++.+.+.+.....+...++++.     .|+++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (394)
T TIGR00883       211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR  285 (394)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            45555554  56666666666666667777888888654     6888888888888777766655433     356655


Q ss_pred             c
Q 018727          349 F  349 (351)
Q Consensus       349 ~  349 (351)
                      +
T Consensus       286 ~  286 (394)
T TIGR00883       286 P  286 (394)
T ss_pred             H
Confidence            4

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.87  E-value=8.1e-21  Score=169.67  Aligned_cols=234  Identities=24%  Similarity=0.423  Sum_probs=195.8

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+....+...+......+..|.+.+++|.+..+      .+++.+...++..+++++.|+++||+|||+.+.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            345566777788888889999999999999888      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (351)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (351)
                      +.+.....++++.+++.|++.|++.+...+. ..++.|++|+|+|++.+++.+....+|..++|.+++.+.+        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  148 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE--------  148 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999989999999999999999998887665 9999999999999999999999999999999999999987        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (351)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (351)
                              ..+|+..+.+.++..++..+...+.+                                            |.
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~  176 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RL  176 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence                    44455555666665555544444433                                            45


Q ss_pred             hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF  349 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~  349 (351)
                      ++...+..++.......+..+.+.+..+.     ++.+..+.+.+.....++..++.+..     |+++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  242 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR  242 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67777777788888888888999888775     58899999999998888887766553     555554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=7.8e-21  Score=178.43  Aligned_cols=280  Identities=17%  Similarity=0.155  Sum_probs=182.1

Q ss_pred             ccchhhhHHHHHHhhcccccccchh-hhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727           57 ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (351)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      .....+....+.++...+....... .+.+++.+...++..+++++.|+++|++|||+.++++.++..++.+++++++|.
T Consensus        63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~  142 (513)
T KOG0254|consen   63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW  142 (513)
T ss_pred             cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3455555555555432211110000 125899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (351)
                      ++++++|++.|+|.|..... +.+++|..|++.||...+..+....+|..++..++....+        .       .++
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~--------~-------~~~  207 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK--------V-------YAG  207 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc--------C-------Ccc
Confidence            99999999999998887764 9999999999999999999999999999999555544432        0       146


Q ss_pred             chhHHHHHHHHHHHHHHHHhccccccccCCCCCccchh--hHHHhhh------------hhhhh-hhhhhcccC-ccccc
Q 018727          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALES------------ASAEV-KEEEGREAT-PKKSL  278 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~------------~~~~~-~~~~~~~~~-~~~~~  278 (351)
                      ||.++.+..+.+++..+..+++||+|++.....+..+.  .......            ...+. .+....... .+.++
T Consensus       208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (513)
T KOG0254|consen  208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGEL  287 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHh
Confidence            77788888888888877788999999875443222221  1111111            00000 000001111 24444


Q ss_pred             ccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhH-Hh-hhccccccccccC
Q 018727          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKV-DT-HILPFKIDYRFFL  351 (351)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~-~~-~~~~~~~~~r~~l  351 (351)
                      +++......++...+..+++....+....|..+.+...+...+......+.+...+.. ++ ..++.|++||.+|
T Consensus       288 ~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll  362 (513)
T KOG0254|consen  288 FSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL  362 (513)
T ss_pred             cCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            5433334455556666666655555555455444333333333244444444444333 33 3455688888753

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=9.1e-21  Score=171.83  Aligned_cols=241  Identities=15%  Similarity=0.150  Sum_probs=172.4

Q ss_pred             HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh----HHHHHHHHHHHHH
Q 018727           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~  125 (351)
                      .+....+.+.+.|++|.+.+++|.+..+      +|++.+++.++..++++++|.++||+|||    +.+.+...+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4444556678889999999999999999      99999999999999999999999999994    3333222221  2


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (351)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (351)
                      .......++++.+++.|++.|++.+...+. .++..++  .++|+++++......++|.++||.+++.+.+         
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------  153 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------  153 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            223344678999999999999987766664 6666665  4568888999999999999999999999998         


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccch
Q 018727          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (351)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  284 (351)
                             .++|+.+++..++..++..+..+..||++++..+++   +                ..+....+++++|+|.+
T Consensus       154 -------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~~  207 (382)
T PRK11128        154 -------WFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPTV  207 (382)
T ss_pred             -------HcChhHHHHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChhH
Confidence                   445555556555444444333444454322111000   0                00012346788899999


Q ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhc
Q 018727          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHIL  341 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~  341 (351)
                      +..++..++.......+..+++.|+.+      .|+++.++|.+.+...+..++.++
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~  258 (382)
T PRK11128        208 WRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIFA  258 (382)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH
Confidence            988887777777777788888888865      688999999998877777665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.3e-20  Score=162.65  Aligned_cols=271  Identities=16%  Similarity=0.146  Sum_probs=210.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      .+..+....++.++......+.+|.+.+.|+++..+      ++++..+++.++.+.+++.|++.+|+|+|+.++.++.+
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l   87 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL   87 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence            344556666777788888899999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh---hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          122 VVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       122 ~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      +++++.++.   ...++..++++-++.|.|.+...+. +++++.+.+++.....+++.+...++|.+++|++++.+..+.
T Consensus        88 ~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~  167 (422)
T COG0738          88 YAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG  167 (422)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            999998874   5578889999999999999998885 999999999988899999999999999999999999888621


Q ss_pred             ----CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727          198 ----EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (351)
Q Consensus       198 ----~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                          -+-+....|+... -..++.++...+...++..+.....+.+..+.. ++++                  .++...
T Consensus       168 ~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-~~~~------------------~~~~~~  227 (422)
T COG0738         168 VALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-APSL------------------GASGSA  227 (422)
T ss_pred             hhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-cccc------------------cccccc
Confidence                0000011122111 122455556555554444443333222111111 1100                  001111


Q ss_pred             cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ...+++++|.++...+..+++........++++.|+.+.     .|++..+.+...+....+.+++++.+
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGRFig  292 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGRFIG  292 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999987     78999999999999999999998665

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.86  E-value=2.4e-20  Score=173.93  Aligned_cols=263  Identities=12%  Similarity=0.153  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChHH-
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-  114 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-  114 (351)
                      ++...++...+..+.......+.+|.+.++.|.+..+      ++.+ +.....+ ++.+++|+++||+     |||+. 
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~   83 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGW   83 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHH
Confidence            4456667777778888888889999999999999888      8875 3333333 6899999999999     99985 


Q ss_pred             HHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          115 IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      +..+.++.+++..++++.   ++++.+.+.+++.+++.+...+. .++..|++|+++|+++.++...+..+|.++++.++
T Consensus        84 ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~  163 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA  163 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777776776666554   46788888999999987776664 89999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      +.+.+       .        .++|+.++++.++..++..+..++.||+++....  ++ +..               ..
T Consensus       164 ~~l~~-------~--------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~--~~-~~~---------------~~  210 (491)
T PRK11010        164 LWLAD-------R--------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV--PK-TLE---------------QA  210 (491)
T ss_pred             HHHHh-------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc--cc-chh---------------hh
Confidence            88876       1        1356666677776666665555567776432110  00 000               00


Q ss_pred             ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHH-hhhHHhhhc-----ccc
Q 018727          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT-GTKVDTHIL-----PFK  344 (351)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~-~~~~~~~~~-----~~~  344 (351)
                      ...++++.++++..+...+..+++.........+.+.|+.+.     .|++..+++.+.... .++.+++.+     ..|
T Consensus       211 ~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr  285 (491)
T PRK11010        211 VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGALYGGILMQR  285 (491)
T ss_pred             HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011344566777777666666666666666666777776554     789999999987533 344444433     335


Q ss_pred             ccccc
Q 018727          345 IDYRF  349 (351)
Q Consensus       345 ~~~r~  349 (351)
                      +++|+
T Consensus       286 ~g~~~  290 (491)
T PRK11010        286 LSLFR  290 (491)
T ss_pred             HhHHH
Confidence            55443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.85  E-value=4.6e-20  Score=168.39  Aligned_cols=240  Identities=13%  Similarity=0.256  Sum_probs=173.7

Q ss_pred             HHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChH-HHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA  120 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~  120 (351)
                      ...++.++...+.....+|.+.++.|++.++      +|++..+...  .+..+++|+++||+     |||| .+.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            4456677788888889999999999999999      9998766654  68999999999999     8875 6777777


Q ss_pred             HHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       121 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      +.+++....++.   .+++.+++..++.++..+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++.+.+ 
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~-  155 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD-  155 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence            777776666665   35677777777777776666665 9999999999999999999999999999999999988876 


Q ss_pred             CCCCCCcccccccccC-ccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727          197 AEKYPNLFSSESLFGK-FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (351)
Q Consensus       197 ~~~~~~~~gw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                                     . ++|+.++.+.++..++..+..++.||+++++.+++   +.. +              +....+
T Consensus       156 ---------------~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~---~~~-~--------------~~~~~~  202 (402)
T PRK11902        156 ---------------RVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPR---SLG-E--------------AVVGPL  202 (402)
T ss_pred             ---------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc---hhH-H--------------HHHHHH
Confidence                           3 35666667766666655555566777543221110   000 0              011235


Q ss_pred             cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHh
Q 018727          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG  333 (351)
Q Consensus       276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~  333 (351)
                      ++++|+|.++..++..++..........+.+.++.+.     +|+++.++|.+....+
T Consensus       203 ~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~  255 (402)
T PRK11902        203 RDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLG  255 (402)
T ss_pred             HHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHH
Confidence            5678999888877766666554444334444455443     7899999999876544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.85  E-value=5.9e-20  Score=165.00  Aligned_cols=254  Identities=12%  Similarity=0.187  Sum_probs=172.8

Q ss_pred             cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChHH-HHHHHHHHHHHHHHh
Q 018727           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLF  129 (351)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~  129 (351)
                      ......+.+|.+.+++|+|.++      .++.... .+...+ .+++|+++||+     ||||. ++.+.++.+++....
T Consensus         3 ~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         3 PLGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             CchhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999999      8888655 444444 99999999998     89887 456666666665555


Q ss_pred             hhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727          130 GLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (351)
Q Consensus       130 ~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (351)
                      ++.   .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++.+.+       ..|
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g  147 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEF  147 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence            555   45556666667777776666664 8899999999999999999999999999999999998887       333


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHh-ccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc-
Q 018727          206 SESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP-  283 (351)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  283 (351)
                      ... +.+++|+.++.+.++..++..+..+ ..||+.+.... +   +...       .       +....++++++++. 
T Consensus       148 ~~~-~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~---~~~~-------~-------~~~~~~~~~~~~~~~  208 (356)
T TIGR00901       148 ANT-GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-P---KPLT-------Q-------AVLKPIREFFQRKNM  208 (356)
T ss_pred             ccc-ccccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-c---hhHH-------H-------HHHHHHHHHHHhcCc
Confidence            211 1255688888888776666555444 34664321110 0   0000       0       00113345566665 


Q ss_pred             --hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhh-hHHhh-----hccccccccc
Q 018727          284 --LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGT-KVDTH-----ILPFKIDYRF  349 (351)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~-----~~~~~~~~r~  349 (351)
                        ++...+..++..........+++.|+.+      .|+++.+++.+....+. ..+++     .+..|+++|+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  276 (356)
T TIGR00901       209 IQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY  276 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence              6666666666667777778888888866      68899999988876553 22233     3334666544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=7.3e-20  Score=188.15  Aligned_cols=280  Identities=18%  Similarity=0.134  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHhhcccc-chhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.+...+...++..+... ......+.+..+++.+...    ...+++.+++.+++.++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            344444444444444333 2333445555566554322    22688889999999999999999999999999999887


Q ss_pred             HHHHHHHHHh---hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          120 ASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       120 ~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++.+++.++.   ...++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.++||.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7655554443   34578999999999999998888775 8999999999999999999999999999999999999876


Q ss_pred             CCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (351)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      .... .+..+    + .+.++..++......++.++..+.+||.+.......+..+..  .           .......+
T Consensus       165 ~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~  225 (1146)
T PRK08633        165 SVNG-NTPSE----I-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL--F-----------PKLLWRNL  225 (1146)
T ss_pred             hhcc-ccccc----c-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc--c-----------HHHHHHHH
Confidence            2000 00000    0 111222223333333344445556677654322211000000  0           00011234


Q ss_pred             cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchh-hhHHHHHHHhhhHHhhhcc-cccccc
Q 018727          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGTKVDTHILP-FKIDYR  348 (351)
Q Consensus       276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~~~~~~-~~~~~r  348 (351)
                      +.+++++.++..++..++.......+..+++.|+.+.     +|++.. ..|++.+..+++.+++.++ +++.+|
T Consensus       226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r  295 (1146)
T PRK08633        226 KLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR  295 (1146)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5577888888877777777666667777888887765     788888 8999999888888776544 344444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.84  E-value=8.9e-20  Score=187.11  Aligned_cols=224  Identities=16%  Similarity=0.145  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHH
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~  159 (351)
                      .++..+++.+.++++++++|+++||+|||+++..   +.++..+..+.....++++.++++|+++|++.+.+.++ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            6788889999999999999999999999997643   22222222233334478999999999999999888886 9999


Q ss_pred             hhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccc
Q 018727          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (351)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (351)
                      .|++|+++|++++++.+.+.++|.++||.++|++.+                ..+|+..+...++..++.+++.+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI----------------SGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999987                4455555544444455555556667765


Q ss_pred             cccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCccc
Q 018727          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (351)
                      +.............               ......++.+.+++.++..++..++.++....+..++|.|+.+.     +|
T Consensus       198 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g  257 (1140)
T PRK06814        198 GNAAPDLKIDRNII---------------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG  257 (1140)
T ss_pred             CCCCCCCeeccchH---------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence            43222111100000               00112355677889999988888888877778888999998876     78


Q ss_pred             CchhhhHHHHHHHhhhHHhhhccc
Q 018727          320 YSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       320 ~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .++...|.+++..+++.+++.+..
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~~~  281 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSFLA  281 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988876655

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.8e-21  Score=165.79  Aligned_cols=212  Identities=18%  Similarity=0.214  Sum_probs=168.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~  162 (351)
                      +|++++...+.+.+.+++.|.+.||+|+|..+++|.+.+..+.+++++.++++.++++|.++|+|.+...++ .++++|.
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~  187 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADV  187 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999888886 9999999


Q ss_pred             ccccc-hhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727          163 FREEH-QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       163 ~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      ||+++ |++++|+...+.++|..+||..+|.+.+                -.|++.||.+++++.++-....+++-|+.+
T Consensus       188 f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  188 FPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             cccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            99765 7999999999999999999999999999                667788889998888887666555544332


Q ss_pred             cCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCc
Q 018727          242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  321 (351)
                      ....+                      ..+..++++++++|.++.........+....-....++.|..+.     +.-+
T Consensus       252 ~~~~~----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~~p  304 (464)
T KOG3764|consen  252 MDPDS----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MFTP  304 (464)
T ss_pred             cCccc----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----ccCC
Confidence            22211                      11234678889999988876666666665555566666666654     3322


Q ss_pred             hhhhHHHHHHHhhhHHh
Q 018727          322 TQMVGEVLAITGTKVDT  338 (351)
Q Consensus       322 ~~~~g~~~~~~~~~~~~  338 (351)
                      .-+.|..+....+...+
T Consensus       305 ~w~~G~~fLp~~~~y~i  321 (464)
T KOG3764|consen  305 GWEVGLAFLPASLSYAI  321 (464)
T ss_pred             Ccceeeeecccccchhc
Confidence            22555555555554444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.84  E-value=2.6e-19  Score=163.12  Aligned_cols=268  Identities=13%  Similarity=0.139  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      .++.+....++.........|.+|.+. +++|.+..+      .+++.+++.++..+++++.|+++||+|||+.++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~   76 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS   76 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            455666677777777888888887654 568999999      9999999999999999999999999999999988766


Q ss_pred             HHHHHHHHh---hhh-----hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          121 SVVIFNTLF---GLS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       121 ~~~~~~~~~---~~~-----~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ..+++....   ...     +....+++.+++.|++.+...+. ..+..|..  ++++..++......++|.+++|.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence            555443322   111     12334556678888877666554 66666643  33456778888888999999999998


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhc-cccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      .+.+                 .+|+.++...++..++..+..+. .||+++++. .+   +.    .+ .+     .+..
T Consensus       155 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~----~~-~~-----~~~~  203 (396)
T TIGR00882       155 ILFS-----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VA---NA----LG-AN-----ASAF  203 (396)
T ss_pred             hhhc-----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hh---cc----cc-cc-----cCCC
Confidence            8763                 34556666666666555444433 333321110 00   00    00 00     0011


Q ss_pred             ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----ccccc
Q 018727          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKI  345 (351)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~  345 (351)
                      +.++.++++|+|+++..++..+...........+++.|+.+....  .+.+....|...+...+...+..     +..|+
T Consensus       204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~  281 (396)
T TIGR00882       204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFAT--PQQGTRVFGYVTTMGELLNALIMFCAPLIINRI  281 (396)
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            112356778899888776666555555555666677777664221  24555667777776665554433     34466


Q ss_pred             ccccc
Q 018727          346 DYRFF  350 (351)
Q Consensus       346 ~~r~~  350 (351)
                      ++|++
T Consensus       282 g~~~~  286 (396)
T TIGR00882       282 GAKNA  286 (396)
T ss_pred             ccchh
Confidence            66653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.84  E-value=7.3e-19  Score=163.19  Aligned_cols=175  Identities=14%  Similarity=0.188  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHH-h--hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~  116 (351)
                      +.++.++...++..+.++...+.+|.+.+ +  +|++..+      .+++.+.+.++..++++++|+++|| +|||+++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            44566777888888888888888887755 4  8999988      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccc---hhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      ++.++.+++.++.+++++++.+++.|++.|++.|...+. .++++|++|+++   |++++++++.+.++|.++||.++++
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888888889999999998887764 899999998764   8889999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (351)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      +.+                ..+|+..+...++..++.++.++..+
T Consensus       164 l~~----------------~~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       164 IAE----------------NYGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHH----------------hcChHHHHHHHHHHHHHHHHHHHHcc
Confidence            987                44555555665544444444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.83  E-value=1.3e-18  Score=158.37  Aligned_cols=254  Identities=15%  Similarity=0.201  Sum_probs=161.1

Q ss_pred             HHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHH-HHHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGTA  120 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~  120 (351)
                      ...++..++..+......|.+|. +.+++|.+..+      .|++.+...+ +..++.+++++ +||+||||.+ ..+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~   90 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCL   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHH
Confidence            34555677777777777888865 56789999999      9998776555 55556655666 9999999875 45556


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchh--hhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA--LGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      +..++..+.+++++++.+++.+.+.+...+...+. ..+..|+.++++|.  ...+..+.+.++|.+++|.+++.+.+  
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~--  168 (393)
T PRK15011         91 LGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM--  168 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Confidence            65666777778888888766655544433344554 77788877766553  34578888999999999999999988  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                                    ..+|+.++...++..++. ++..+++||.+++++..++  +                .    ...+
T Consensus       169 --------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~----~~~~  212 (393)
T PRK15011        169 --------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T----------------L----EAPR  212 (393)
T ss_pred             --------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c----------------c----cccc
Confidence                          455666666666555544 3445557776432211000  0                0    0000


Q ss_pred             ccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhh-----hccccccccc
Q 018727          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTH-----ILPFKIDYRF  349 (351)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~-----~~~~~~~~r~  349 (351)
                      +  +.+..+...............+..+.|.|+++.     +++++.+++.+.+...++.+++     .+..|+++|+
T Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        213 R--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            0  112233333333444444555666788887765     7889888988877665554433     3333555554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.83  E-value=1.5e-18  Score=155.12  Aligned_cols=176  Identities=13%  Similarity=0.108  Sum_probs=145.0

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      +|+..|+..+ ........|++.+++|+++.+.     .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++.
T Consensus        32 lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~  105 (511)
T TIGR00806        32 LCFYGFMAQF-RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV  105 (511)
T ss_pred             HHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            4443333332 3445556688999999998751     688999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (351)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (351)
                      .++.++++++..+.+.|++.|++.|...+...++..++|+++|+++.++.+.+..+|.++++++++.+.        .+|
T Consensus       106 t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~--------s~g  177 (511)
T TIGR00806       106 WLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV--------TLG  177 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcC
Confidence            999999999999999999999998887755999999999999999999999999999999999999843        456


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      |++..      ...++.....+++++..+++|..++
T Consensus       178 Wr~y~------~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       178 WISYS------TLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             chhHH------HHHHHHHHHHHHHHHHHHhCCCCch
Confidence            66533      4455555556666777788885444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.82  E-value=1.3e-18  Score=161.63  Aligned_cols=149  Identities=17%  Similarity=0.183  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~  118 (351)
                      +.++.++...+...+.++...+.++ ++.+++|.+..+      .+++.+.+.....+..+++|+++|| +||||++.++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            5566777777888888888877775 556779999888      8899999888888888999999999 9999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHH-HHHHHHHhhhhcccchh-HHHHHhhhcccc--chhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          119 TASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      .++..++.++++++.+... ++++|+++|+|.|...+ ..++++|.+|++  +|+.++++++.+.++|..+||.+++++.
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888766444 55789999999888776 489999999887  4578899999999999999999999999


Q ss_pred             C
Q 018727          195 Q  195 (351)
Q Consensus       195 ~  195 (351)
                      +
T Consensus       168 ~  168 (489)
T PRK10207        168 D  168 (489)
T ss_pred             H
Confidence            8

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.82  E-value=3.3e-18  Score=158.59  Aligned_cols=139  Identities=18%  Similarity=0.256  Sum_probs=117.0

Q ss_pred             HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (351)
                      .....+........++++..++|-++.       ..|+.+...++.+++.++.|.++|.+|||.+++.+.++..++.+++
T Consensus        53 ~~~~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~  125 (599)
T PF06609_consen   53 VIAAYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC  125 (599)
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh
Confidence            333445555666777899999987754       6889999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          130 GLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.++|...++.+..+.|+|.|........++|..|.|.|+...++......+....+|.++..+..
T Consensus       126 atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~  191 (599)
T PF06609_consen  126 ATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA  191 (599)
T ss_pred             hcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence            999999999999999999987777667779999999999888777766655555667777766654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.81  E-value=2.4e-18  Score=159.04  Aligned_cols=278  Identities=17%  Similarity=0.164  Sum_probs=200.4

Q ss_pred             CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      +.|...+..++.........+....+.+.+.++++.+.++      ++|+.++......+..++.+.+.||+|.|++.++
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~  116 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA  116 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence            3344444444444444444555667788999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHH-HHhhhhcccch-hHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          118 GTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      |.++..++.++.+++++.|.+++.. ++.|+|.|... |...++..+|+ |+|+.+.|+...+.++|.++-|.+.-++.+
T Consensus       117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            9999999999999999999888776 67888888754 45777776665 669999999999999999999999999998


Q ss_pred             CCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccc-ccccCCC----------------------CCccchh
Q 018727          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND----------------------DDDSCDV  252 (351)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~----------------------~~~~~~~  252 (351)
                                      +.|||......+.+.+-..+....+++ .++..+.                      ...+...
T Consensus       196 ----------------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (509)
T KOG2504|consen  196 ----------------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSG  259 (509)
T ss_pred             ----------------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCC
Confidence                            555555556665555544444333333 2211000                      0000000


Q ss_pred             hHH----Hhhhhhhhhhhhh-hcccC-c---ccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchh
Q 018727          253 SYD----ALESASAEVKEEE-GREAT-P---KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (351)
Q Consensus       253 ~~~----~~~~~~~~~~~~~-~~~~~-~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  323 (351)
                      ..+    ..+...+..++.+ ...+. .   ..++++++.++...+...+..........+++.|..+      .+++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~~  333 (509)
T KOG2504|consen  260 LKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSSN  333 (509)
T ss_pred             CCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCChh
Confidence            000    0000000000000 01111 1   2578999999999999999999999999999988886      799999


Q ss_pred             hhHHHHHHHhhhHHhhhcccc
Q 018727          324 MVGEVLAITGTKVDTHILPFK  344 (351)
Q Consensus       324 ~~g~~~~~~~~~~~~~~~~~~  344 (351)
                      +++.++++.++..+++++..+
T Consensus       334 ~aa~l~Siigi~~i~gRi~~G  354 (509)
T KOG2504|consen  334 DAAFLLSIIGVSDIIGRIILG  354 (509)
T ss_pred             hhHHHHHHHHHhhhhhhhhhh
Confidence            999999999999999987764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.81  E-value=1.4e-18  Score=161.37  Aligned_cols=261  Identities=21%  Similarity=0.232  Sum_probs=195.3

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      +.+.+..+|...++..++..+....++-+..+..-|+..      .+++..+..+...+.++++|.++||++||++++.+
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~~   81 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILILS   81 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence            345666788888888888888888888777777767777      99999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          119 TASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       119 ~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      -++.++..+..++     ..+.+.+++.-++.|++.+...|+ ++++.|+.|+++...+.++.+...++..++||.++|.
T Consensus        82 ~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~  161 (524)
T PF05977_consen   82 QLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI  161 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence            8776655443332     246788899999999999999997 9999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhccc
Q 018727          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (351)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      +..                ..|....+.+.++..++.+++....+.+.......   .+..              ...-.
T Consensus       162 Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~---~e~~--------------~~~l~  208 (524)
T PF05977_consen  162 LVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLP---RERF--------------FSALR  208 (524)
T ss_pred             HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccc---hhhh--------------hhhHH
Confidence            987                34444555665555555444444443322111100   0000              00111


Q ss_pred             CcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ..++.+.++|.+...++..+++++....+...+|.+..+.     +|.++...|++.+..+++.+++.+..
T Consensus       209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal~~  274 (524)
T PF05977_consen  209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGALLL  274 (524)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344455677777776666677777777778889887776     78899999999999999999877665

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.81  E-value=1.2e-18  Score=160.02  Aligned_cols=270  Identities=13%  Similarity=0.069  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.++.++...++..+..+...+++|.+.+ ++|++..+      .|++.++..++..++++++|+++||+|||++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            34555666677777777777888876555 48999999      999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHhh---hhhh-----HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          120 ASVVIFNTLFG---LSVN-----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       120 ~~~~~~~~~~~---~~~~-----~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      .+.+++.....   ....     ....++.+++.|.+.....+. ..+. +.. .++++..++......++|..++|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHH
Confidence            65554432211   1111     111122222233222222222 2332 222 34567788888889999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhc
Q 018727          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      +.+.+                 .+|+.+++..++..++..+..++.+++++++....++.+        .++     +..
T Consensus       162 g~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~  211 (420)
T PRK09528        162 GILFN-----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALG--------ANA-----SAV  211 (420)
T ss_pred             HHHHh-----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchh--------ccc-----ccc
Confidence            98874                 234455566665555555444444332221110000000        000     000


Q ss_pred             ccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----ccccc
Q 018727          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKI  345 (351)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~  345 (351)
                      ..+..++.+|+|.++...+...........+...+|.|+.+...  +.+.+..+.|.+.+...+...+++     +..|+
T Consensus       212 ~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  289 (420)
T PRK09528        212 SLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFA--TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI  289 (420)
T ss_pred             cHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11123456788887766555555544444555566766654311  135566778888777666554443     33466


Q ss_pred             ccccc
Q 018727          346 DYRFF  350 (351)
Q Consensus       346 ~~r~~  350 (351)
                      ++|+.
T Consensus       290 g~~~~  294 (420)
T PRK09528        290 GAKNA  294 (420)
T ss_pred             Ccchh
Confidence            66653

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.79  E-value=4.7e-22  Score=184.33  Aligned_cols=185  Identities=22%  Similarity=0.385  Sum_probs=142.7

Q ss_pred             HHHhhccccchhhhHHHHH--Hhhcccccccc---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           50 VLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+..+++........+...  ..+..+....+   .+.+.++..+...++..+|++++|.++||+|||+.+.++.++..+
T Consensus         9 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i   88 (451)
T PF00083_consen    9 GFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMII   88 (451)
T ss_pred             HHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence            3555555555544444333  22333322211   234578899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh---hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC
Q 018727          125 FNTLFGLSV---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (351)
Q Consensus       125 ~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (351)
                      +.++.++++   +++.+.++|++.|++.|...+ ...++.|..|+++|++..++.+.+..+|..++..++..+....   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---  165 (451)
T PF00083_consen   89 GSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS---  165 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            999999999   999999999999999888666 5999999999999999999999999999998888775553311   


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCC
Q 018727          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD  247 (351)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  247 (351)
                          +      .+.||..+....+..++.++...++||+|++...+.
T Consensus       166 ----~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~  202 (451)
T PF00083_consen  166 ----D------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG  202 (451)
T ss_pred             ----c------cccccccccccccccccccccccccccccceecccc
Confidence                1      234566667777777777777789999999865444

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.78  E-value=9e-17  Score=137.09  Aligned_cols=237  Identities=16%  Similarity=0.097  Sum_probs=193.7

Q ss_pred             ccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh
Q 018727           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (351)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      -....+.|.++.+.+++|+|.+.      .|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++=... +
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~   98 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G   98 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c
Confidence            35678889999999999999999      9999999999999999999999999999999999999999999888777 7


Q ss_pred             HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (351)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (351)
                      .+.++.+-.+.|.+.+...+. +..+-+.||++ -+..+|+|....++|+.+++.+...+.+.       .        .
T Consensus        99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~-------~--------~  162 (395)
T COG2807          99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQH-------S--------G  162 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHh-------h--------c
Confidence            778889999999999998886 99999999866 68999999999999999999999998872       1        1


Q ss_pred             cchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHH
Q 018727          214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  293 (351)
                      +|+....+-+..+++.++.+  +|...++...+                     ......+...++|+|.-|.+.+.+.+
T Consensus       163 gW~~aL~~WAl~allAl~~W--lPq~~r~~~~~---------------------~~~~~~~~~~vw~~~~aW~vtLfmGl  219 (395)
T COG2807         163 GWRGALGFWALLALLALLIW--LPQALREQAAS---------------------IATKLVSVRKVWRSPLAWQVTLFMGL  219 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHH--hhhcccccccc---------------------cccccccccccccCchhHHHHHHHHh
Confidence            34444455555555555444  44432211111                     01112234568999999999999999


Q ss_pred             HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      .++...+...++|.++.+      .|+|++++|.+.+...+..+...+..
T Consensus       220 qS~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~ll~  263 (395)
T COG2807         220 QSLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTALLI  263 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999988      69999999999999998887765544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.77  E-value=2.3e-17  Score=151.02  Aligned_cols=259  Identities=10%  Similarity=-0.000  Sum_probs=164.3

Q ss_pred             HHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASV  122 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~  122 (351)
                      .+....++.........|.++ .+.+++|++..+      +|++.++..++..++++++|.++||+|| |+++.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            355566666667777766664 556778999999      9999999999999999999999999965 77888888888


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHH----Hh----hhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAY----AC----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~----~~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      .++..+..+.++++.+++.|++.|++.+...+. .+.    ..    |......|.+..|      .+|.+++|.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        80 ALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            888888888889999999999988875554432 332    22    2233333444444      46888888888877


Q ss_pred             cCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (351)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      ..                ...| .++++.++..++..+..+++||+++.+++++  .+.               +.....
T Consensus       154 ~~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~---------------~~~~~~  199 (418)
T TIGR00889       154 DI----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAK--MSI---------------KVMLGL  199 (418)
T ss_pred             cc----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCccccc--cCH---------------HHHhhh
Confidence            32                1112 2344555545555455567787643211110  000               000011


Q ss_pred             cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCC--cccCchhhhHHHHHHHhhhHHhhhc-----ccccc
Q 018727          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG--GLNYSTQMVGEVLAITGTKVDTHIL-----PFKID  346 (351)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~g~~~~~~~~~~~~~~~-----~~~~~  346 (351)
                      ..++++|+|.++...+..++..........+++.|..+.....  ..+++....+...+...+..+++++     ..|++
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g  279 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG  279 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2345678888887777777766655556666677776521000  0123456678888887776665543     33566


Q ss_pred             ccc
Q 018727          347 YRF  349 (351)
Q Consensus       347 ~r~  349 (351)
                      +|+
T Consensus       280 ~r~  282 (418)
T TIGR00889       280 IKK  282 (418)
T ss_pred             cHH
Confidence            554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=2e-17  Score=156.02  Aligned_cols=156  Identities=22%  Similarity=0.301  Sum_probs=130.3

Q ss_pred             HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhh
Q 018727           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL  148 (351)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  148 (351)
                      +.+..+...      ..+..+++.+|..+|++++|.++||+|||++++.++++..++.++.++++|++.+.+.|++.|++
T Consensus       111 ~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~  184 (521)
T KOG0255|consen  111 NLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFF  184 (521)
T ss_pred             ceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            344555555      88889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHH
Q 018727          149 NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  227 (351)
Q Consensus       149 ~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  227 (351)
                      .+.... ...+++|++++++|+.+..+ ......++.++|.+++++..                  +||+..++..+..+
T Consensus       185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~~  245 (521)
T KOG0255|consen  185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPSG  245 (521)
T ss_pred             ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHH
Confidence            666555 59999999999999999999 77777888888888888864                  45555577777776


Q ss_pred             HHHHHHhccccccccCCCCCcc
Q 018727          228 GVTIAAFWLPETLHRHNDDDDS  249 (351)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~  249 (351)
                      +.++..+..||++++...+.+.
T Consensus       246 ~~~~~~~l~~Es~rwl~~~g~~  267 (521)
T KOG0255|consen  246 LFLLLWFLPPESPRWLLSKGRI  267 (521)
T ss_pred             HHHHHHHccCcChHHHHHcCch
Confidence            6666667777999886554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.76  E-value=5.9e-17  Score=147.36  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHH--HHHHHHHHHHhhhhh-hhhhhhhcChHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFW-GLVADRYGRKPVIIMGT  119 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~  119 (351)
                      +..+...++.+++..+...|.+|.+.++.|.+..+      +|++  .+.+.+...+.+++. ++.+||+||||..++..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            44567778899999999999999999999999999      9987  456677787888888 55799999999875554


Q ss_pred             HHH-HHHHHHhh---hhhh-HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       120 ~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      .+. ..+....+   ...+ ...++...++.++..+...+. ..+..|..++++++...+....+..+|.++++.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 21122222   2222 223333333444444445553 66778888888888888888888889999999888888


Q ss_pred             cCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccC
Q 018727          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (351)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      .+                ..+|+.++++.++..++..+..++.+|+++++.+++   +                  +...
T Consensus       157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~  199 (390)
T TIGR02718       157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP---L------------------ARRA  199 (390)
T ss_pred             HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc---h------------------hhHH
Confidence            87                556666677777766665555455544322111000   0                  0011


Q ss_pred             cccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhh
Q 018727          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGT  334 (351)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~  334 (351)
                      +.++.+|+|.++..+...++..........+.+.|+.+      .|++++++|.+....++
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~  254 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGA  254 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHH
Confidence            34567888888888877778877777888888888876      69999999999876653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.73  E-value=1.8e-17  Score=145.11  Aligned_cols=196  Identities=17%  Similarity=0.179  Sum_probs=141.7

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHhh-cccccccch-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDI-GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      .......+.+.++...++...+.+...+ |.+...... +.-.+.+..+..+|.++|++++|+++||+|||+++...+++
T Consensus        44 ~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liI  123 (538)
T KOG0252|consen   44 IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELII  123 (538)
T ss_pred             HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Confidence            3445567788888888888887776554 222111000 11167888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhh-------hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          122 VVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       122 ~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      ..++.+++++..       -.+++...|++.|+|.|.-.|+ .++.+|....+.||...+.+....+.|...|.+++-.+
T Consensus       124 mIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  124 MIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             HHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence            999998776632       2577889999999999997776 88999999999999999877666666555555444333


Q ss_pred             c---CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccC
Q 018727          194 A---QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH  243 (351)
Q Consensus       194 ~---~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  243 (351)
                      .   +...+.++.+   .-. +.-||..+.+.++.+++.+...+.+||+++..
T Consensus       204 ~~~fe~~~~~~~~~---~~l-d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  204 SAIFEKIFNGPSTY---PHL-DGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             HHHHhccCCCCCCc---hHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            2   1111111000   000 23488888998888888888889999998866

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.72  E-value=3e-17  Score=151.58  Aligned_cols=245  Identities=15%  Similarity=0.117  Sum_probs=157.4

Q ss_pred             ccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChH-HHHHHHHHHHHHHHHhh
Q 018727           57 ISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFG  130 (351)
Q Consensus        57 ~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~  130 (351)
                      .+...+++ +++.+++|+++.+      .|++.++..+..++..++.|+++||    +|||| .++.+....+++.+++.
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            34444444 5566778999999      9999999999999999999999998    67754 56677777777776665


Q ss_pred             hhhh------HHHHHHHHHHhhhhcccchh-HHHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727          131 LSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (351)
Q Consensus       131 ~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (351)
                      ..++      ...+++.+++.+++.+...+ ..++..|.. ++++|++..++.+.+..+|..+++.+.+.+....++.. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~-  167 (437)
T TIGR00792        89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGD-  167 (437)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence            5432      45566677777877666544 477888887 56889999999998888988888777666653111000 


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727          203 LFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (351)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (351)
                              ...+|+.++.+.+++.++.. +..+..||+++....++++                  +......++.++++
T Consensus       168 --------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~l~~~  221 (437)
T TIGR00792       168 --------DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKALFKN  221 (437)
T ss_pred             --------ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHHHhCC
Confidence                    03456766666666655544 3445566654211110000                  00011234567889


Q ss_pred             cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      |.++..++..++..........+.+.|.+..     ++ ++...+.+.....++.+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~  274 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGV  274 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHH
Confidence            9988887777776666655555555444432     33 44556666555555555433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PTZ00207 hypothetical protein; Provisional

Probab=99.71  E-value=2.2e-15  Score=140.77  Aligned_cols=129  Identities=13%  Similarity=0.164  Sum_probs=107.8

Q ss_pred             ccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh----
Q 018727           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----  132 (351)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----  132 (351)
                      .+..+.+.+.+.+++|++..+      .+++.++. .....++++.|+++||+|||+++.++.++..++.++++++    
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            345566778899999999988      88887763 3445677789999999999999999999999999998886    


Q ss_pred             --hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHH-HHHhhhhh
Q 018727          133 --VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFL  193 (351)
Q Consensus       133 --~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l  193 (351)
                        ++++.+.+.|++.|++.+...+ +...+.++|| ++||++.|+...+.++|+++ +++..+++
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              6899999999999999877666 4778889997 67999999999999999975 55555444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.70  E-value=7.5e-16  Score=148.05  Aligned_cols=141  Identities=14%  Similarity=0.108  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhc
Q 018727           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF  163 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~  163 (351)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+...+ ..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445566788899999999999999999999999999999998888888777788888888876555444 589999999


Q ss_pred             cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccccccc
Q 018727          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (351)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (351)
                      |+++|++++|+.+....+|.+++|++++.+.+                . +...++++.+++.++..++.+++||+..+
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~~  739 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRGQ  739 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            99999999999999999999999999998865                1 23456666666666666667778987653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.69  E-value=1.6e-15  Score=141.89  Aligned_cols=174  Identities=15%  Similarity=0.241  Sum_probs=123.4

Q ss_pred             HHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH-
Q 018727           51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-  128 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-  128 (351)
                      ++.....+....++|.+. +++|.+..+      .++......++..++.++.|+++||+|||+++.++.++..++... 
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            334445556666777765 457887776      777777888889999999999999999999988876544433222 


Q ss_pred             --hhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727          129 --FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (351)
Q Consensus       129 --~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (351)
                        ...+++...+++++++.|++.+.... ...++.|.+|++.|++++++.+....+++.++|.+.+++.+.         
T Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------  404 (490)
T PRK10642        334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---------  404 (490)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              22234567777888888876555433 477888999999999999975445566678899999888761         


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCC
Q 018727          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (351)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (351)
                            ..+|+.++....+.+++.++..+++||++++..+
T Consensus       405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence                  1124555555555666666666778999887543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.68  E-value=1.5e-15  Score=139.48  Aligned_cols=149  Identities=16%  Similarity=0.262  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMG  118 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~  118 (351)
                      +.++.++...+...+..+....++|.+ .+++|+++.+      .+.+.+.+.....++++++|+++||+ ||||+++++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            456666777777788888888888765 4568999988      99999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchh-HHHHHhhhcccc--chhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      .++..++.++++... +...+++...+.+++.|...+ ..++++|.+|++  +|.+++++.+...++|+.++|.+.+++.
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            999998877665433 223344444444556666655 488999999976  6999999999999999999999999998


Q ss_pred             C
Q 018727          195 Q  195 (351)
Q Consensus       195 ~  195 (351)
                      +
T Consensus       163 ~  163 (493)
T PRK15462        163 E  163 (493)
T ss_pred             h
Confidence            7

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.68  E-value=1.7e-15  Score=141.55  Aligned_cols=149  Identities=17%  Similarity=0.171  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~  118 (351)
                      +.++.++...++..+..+...++++.+ .+++|++..+      .+++.+.+........+++|+++|| +|||+++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            346667777777788877777777655 5789999888      7777777665556666799999999 5999999999


Q ss_pred             HHHHHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccc--hhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      .++.+++..++++++ +.+.+++.+++.|++.|...+. .+++.|++|+++  |..++++++.+.++|..++|.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988887764 4566778889999998887664 789999998653  456788889999999999999999998


Q ss_pred             C
Q 018727          195 Q  195 (351)
Q Consensus       195 ~  195 (351)
                      +
T Consensus       175 ~  175 (500)
T PRK09584        175 A  175 (500)
T ss_pred             H
Confidence            8

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.65  E-value=2.3e-14  Score=129.08  Aligned_cols=198  Identities=18%  Similarity=0.254  Sum_probs=152.4

Q ss_pred             CCCchHHHHHHHHHHHHhhccccchhhhHHHHHHh--hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-h
Q 018727           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-K  112 (351)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r  112 (351)
                      ++.+||.++...+..++.....+++.+..-.+.++  .+.+.+.      .|++.++..++.+++++.+|+.+.|.+. |
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~~~k  102 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTGSVK  102 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence            35667888888888999999888888877555555  5555666      9999999999999999999999999996 7


Q ss_pred             HHHHHHHHHHHHHHHHh-hh---hh-hHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727          113 PVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (351)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  187 (351)
                      +.++.+.++..++++++ ++   .+ .-+.++++|++.|+|.|.....-+|+++....++|.++++....+..+|.++||
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp  182 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP  182 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence            88888999999999888 33   23 578899999999999999998999999998889999999999888889999998


Q ss_pred             HhhhhhcCCCCCCCCccccccccc-Cc-cchhHHHHHHHHHHHHH-HHHhccccccccCC
Q 018727          188 ALGGFLAQPAEKYPNLFSSESLFG-KF-PYFLPCLCISLFAFGVT-IAAFWLPETLHRHN  244 (351)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~  244 (351)
                      .+...+....     ..|+....+ ++ -|..+.++.++..++.+ ++.++++|..+...
T Consensus       183 ~~q~~f~~Lg-----~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~  237 (488)
T KOG2325|consen  183 TIQLAFTPLG-----EKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII  237 (488)
T ss_pred             HHHHHHhhhc-----CCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc
Confidence            8876665321     222222110 22 25566777777766654 44566777665443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.64  E-value=3.3e-14  Score=128.42  Aligned_cols=260  Identities=16%  Similarity=0.265  Sum_probs=174.5

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-ChHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVV  123 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~  123 (351)
                      .+....++..+..+...|.++.+.++.|++..|      +|.+.+...+...++++++|.++||.+ +|+.+.+..++.+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~   79 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA   79 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence            355566677777788889999999999999999      999999999999999999999999986 5677777777777


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh-hhhcCCCCCCC
Q 018727          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYP  201 (351)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~~  201 (351)
                      +........++++.+++..++..+......+. .++..+...  +++.-.|-.-..+++|-+++.... +.+..      
T Consensus        80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~------  151 (400)
T PF03825_consen   80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG------  151 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh------
Confidence            76666677788888877777766665555553 555555554  345667777777777777775442 22222      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (351)
                       ..++      .....++++.++..++.....+.+|+.++++..+++.+                  +....+..+++|+
T Consensus       152 -~~~~------~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~------------------~~~~~~~~~llk~  206 (400)
T PF03825_consen  152 -YLGI------SGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVK------------------KLLGLDALKLLKN  206 (400)
T ss_pred             -hhcc------ccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCcc------------------cccchHHHHHhcC
Confidence             1111      01112334444444444444566787663222211110                  0111233468999


Q ss_pred             cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCccc-CchhhhHHHHHHHhhhHHh-----hhccccccccc
Q 018727          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGTKVDT-----HILPFKIDYRF  349 (351)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~-----~~~~~~~~~r~  349 (351)
                      |+++..++..++.......++++.+.|+++      .| .+...++.++++..++-+.     .++..|++.|.
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~------~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~  274 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQE------LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW  274 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999999999999999988      45 7777778777765554443     33444666554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=2e-14  Score=122.75  Aligned_cols=181  Identities=20%  Similarity=0.164  Sum_probs=143.5

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      ....+....+-.-...-+.|......+.+..+      ..++......+..+++..+|.++|++|||+.+.+..+..++.
T Consensus        83 ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~  156 (528)
T KOG0253|consen   83 AGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF  156 (528)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH
Confidence            33333333333333334446666777888888      899999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccc
Q 018727          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (351)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (351)
                      ..+.+.++|+..+.+.|.+.|+|.|......++-.|..|..+|...+-.. ..+.+|.++...++-.+..       .+|
T Consensus       157 ~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~-------~~g  228 (528)
T KOG0253|consen  157 GVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS-------NFG  228 (528)
T ss_pred             HHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-------hhh
Confidence            99999999999999999999999888555588889999999999877766 8999999999999988887       445


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCcc
Q 018727          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDS  249 (351)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  249 (351)
                      ||+.         .........+.....+++||+++....+.++
T Consensus       229 wr~~---------l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~  263 (528)
T KOG0253|consen  229 WRYL---------LFTSSTPLMFAARFLVWVYESPRFYLAKGDD  263 (528)
T ss_pred             HHHH---------HHHHHhHHHHHHHHHhhcccCcchhhhcCCh
Confidence            5543         3555555566667788999999876544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.63  E-value=1.2e-14  Score=133.08  Aligned_cols=251  Identities=18%  Similarity=0.204  Sum_probs=163.0

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hhcChHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV  114 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~  114 (351)
                      |.++++.++...+...+.+....+.++.+.+++|.+...      .+++..+..+...+.+++.|+++|    |+||||.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            345667777777777888888888998889999999888      999999999999999999999999    5999998


Q ss_pred             HHHH-HHHHHHHHHHhhhhhhHHH-----------------HHHHHHHhhhhcccc-hhHHHHHhhhccccch--hhhHh
Q 018727          115 IIMG-TASVVIFNTLFGLSVNFWM-----------------AVLTRFLLGSLNGLL-GPIKAYACEIFREEHQ--ALGLS  173 (351)
Q Consensus       115 ~~~~-~~~~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~  173 (351)
                      ++++ .....++..+.+++++...                 ++++-.+..++.... .+..++++|.+|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            8775 5666666666666555321                 122222233344433 3468899999998865  57889


Q ss_pred             HHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc--ccc--CccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCc
Q 018727          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES--LFG--KFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDD  248 (351)
Q Consensus       174 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~--~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  248 (351)
                      +.+.+.++|+++|+.++++.....     .+++..  ..+  ..+.+..|++.++..++.. +..+..+|.+....++.+
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~  230 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence            999999999999999998752100     111100  000  1256677777776666544 456667886542211110


Q ss_pred             cchhhHHHhhhhhhhhhhhhhcccCccccccc-----ccchHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 018727          249 SCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANS  311 (351)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                      ++     +.++.+      +.......+++++     ++.++.+++..++..+..+.+..+.+.|..+
T Consensus       231 ~~-----~~~~~~------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~  287 (477)
T TIGR01301       231 NS-----EAAPPS------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGR  287 (477)
T ss_pred             hh-----hccccc------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            00     000000      0000111222222     4677888888888888888888887777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.62  E-value=6.3e-15  Score=134.99  Aligned_cols=175  Identities=12%  Similarity=0.112  Sum_probs=125.1

Q ss_pred             chhhhHHHHHHhhccccccc--chhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh---
Q 018727           59 SLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---  133 (351)
Q Consensus        59 ~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---  133 (351)
                      ......+.+.++.+.++...  ......+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....   
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            34455566666666543210  0001168888899999999999999999999999999999998888776665532   


Q ss_pred             -hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 018727          134 -NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (351)
Q Consensus       134 -~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~  210 (351)
                       +.+.+++.+++.|++.+...+. ..+++|++|+++|++++++.+ ...++|.++||.++|.+.+..++.+         
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~---------  376 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG---------  376 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc---------
Confidence             2456677888999987776665 888999999999999999997 6788999999999999988332110         


Q ss_pred             cCccchhHHHHHHHHHHH-HHHHHhccccccccC
Q 018727          211 GKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRH  243 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~  243 (351)
                       .++|+..+.+.+++.++ .++..++++|+.+..
T Consensus       377 -~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       377 -TFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence             13455555555555444 445566677764433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.62  E-value=4.9e-15  Score=137.36  Aligned_cols=269  Identities=13%  Similarity=0.043  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-----ChHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPV  114 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~  114 (351)
                      ..+..+...++..++. +.....+ +.+.+++|+++.+      ++...+...+...+-.+ +|+++||++     ||+.
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~   97 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWY   97 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHH
Confidence            4445566677888887 5554444 5666678999999      98889999888888555 999999997     7777


Q ss_pred             HHHHHHHH-HHHHHHhhhhhhHHHH-HHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHH---HHHHHhHHHHHHH
Q 018727          115 IIMGTASV-VIFNTLFGLSVNFWMA-VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV---STAWGIGLIIGPA  188 (351)
Q Consensus       115 ~~~~~~~~-~~~~~~~~~~~~~~~l-~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~---~~~~~~g~~~~~~  188 (351)
                      ++++.++. .++....+..++.... .+..++.+++.+...++ -++..|..+ +++....+..   ..+..+|.++++.
T Consensus        98 l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~  176 (468)
T TIGR00788        98 LVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL  176 (468)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH
Confidence            77777666 3443434444443333 34777888887777665 899999998 5554433333   3344589999999


Q ss_pred             hhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhh
Q 018727          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (351)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (351)
                      ++|.+.+                ..+|+..+.+.++..++..+...+++|++.....+.++.+..  ..........+..
T Consensus       177 l~G~l~~----------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  238 (468)
T TIGR00788       177 LGGPLLD----------------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM--NMALLTLGVLANV  238 (468)
T ss_pred             HHHHHHH----------------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh--hhhhhhhhHHHHH
Confidence            9999987                445555566766666666566677888642111111000000  0000000000000


Q ss_pred             hcccCcccccccccchHHHHHHHHH-HHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          269 GREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       269 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      .+.....++.+++|.++..++..++ +.......   .+.|+   ......|+++..+|.+....+++.+++...
T Consensus       239 ~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~---~~~f~---~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~  307 (468)
T TIGR00788       239 KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS---GSVFC---ATTQCLPGGPSFSGMSKVVGNLGSLCGVGG  307 (468)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC---ceeEE---EEcccCCCCcchhhhHHHHHHHHHHHHHHH
Confidence            0111223445677888776555554 22211111   11111   111348999999999999988887765544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=4.2e-14  Score=128.73  Aligned_cols=157  Identities=14%  Similarity=0.178  Sum_probs=120.8

Q ss_pred             chhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727           59 SLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (351)
Q Consensus        59 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      ......|.+ .+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAI  307 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            344556644 4668888877      888887777777889999999999999999888776665555544555677777


Q ss_pred             HHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727          138 AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (351)
Q Consensus       138 l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (351)
                      +++.+++.+++.|...+ ...+..|.+|+ +|+++.++++....+|..++|.++|.+.+                .++|+
T Consensus       308 ~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~~  370 (393)
T PRK15011        308 LLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNYH  370 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhH
Confidence            78888888777666544 36778899985 59999999988899999999999999988                45566


Q ss_pred             hHHHHHHHHHHHHHHHHhcccc
Q 018727          217 LPCLCISLFAFGVTIAAFWLPE  238 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e  238 (351)
                      .++.+..+..++.++..++.||
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        371 AVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            6667777777777777666664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.60  E-value=4.2e-14  Score=129.02  Aligned_cols=161  Identities=19%  Similarity=0.167  Sum_probs=125.1

Q ss_pred             ccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHH
Q 018727           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (351)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~  136 (351)
                      ......+++.+.++.+.+  +      .++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T PRK05122        232 FGTIATFITLYYAARGWD--G------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPW  303 (399)
T ss_pred             HHHHHHHHHHHHHHcccc--c------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            344445566555665552  3      55666778888899999999999999999999988888888887777778888


Q ss_pred             HHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccc
Q 018727          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (351)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (351)
                      .+++..++.|++.+...+. ...+.|.+|+++|+++.++++....+|..++|.+.|.+.+                ..+|
T Consensus       304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~  367 (399)
T PRK05122        304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFGY  367 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcCH
Confidence            8888889999987766654 6777899999999999999999999999999999999987                4556


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccccc
Q 018727          216 FLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      +..+...++..++.++..+.++++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        368 PSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc
Confidence            66667766666666655555555443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.59  E-value=1.2e-16  Score=149.11  Aligned_cols=289  Identities=17%  Similarity=0.211  Sum_probs=2.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+++..+.+.+..+.....+..+.++|+++..+      .|++.+.+-++..+..++..++.+|..|-|.+-++.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            345555566666677777888999999999999      99999999999999999999999997777888899999999


Q ss_pred             HHHHhhhhh--------------------------------------------------hHHHHHHHHHHhhhhcccchh
Q 018727          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (351)
Q Consensus       125 ~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~  154 (351)
                      +.+++++.+                                                  -+..++++.++.|+|.....+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            988876510                                                  024577788999999988888


Q ss_pred             H-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC-------cccccccccCccchhHHHHHHHHH
Q 018727          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-------LFSSESLFGKFPYFLPCLCISLFA  226 (351)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~~  226 (351)
                      . .+|+-|..++++-+.++|+.+.+..+|.++|.++++.+......++.       .-..+..| -..||.-+++.++..
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~  239 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence            6 99999999999999999999999999999999999988753221110       00111122 345788888887777


Q ss_pred             HHHHHHHhccccccccCCCCCccchh---hHHHhhhhhhhhh-------hhhhcccCcccccccccchHHHHHHHHHHHh
Q 018727          227 FGVTIAAFWLPETLHRHNDDDDSCDV---SYDALESASAEVK-------EEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (351)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (351)
                      ++..+..++.|+.-+...+..++++.   +.++.+....+.+       +..+.-....+++++||.+....+.......
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            77777777777654433111111111   0011000000000       1122334567788999999999999999999


Q ss_pred             hHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHH-hhhccccc
Q 018727          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVD-THILPFKI  345 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~-~~~~~~~~  345 (351)
                      ...++.++.|.|++..     ++.++..++.+.+...+... ++.+.+++
T Consensus       320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~  364 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGY  364 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEE
Confidence            9999999999999887     89999999998887666443 35555543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.59  E-value=3.6e-14  Score=129.75  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=114.9

Q ss_pred             HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (351)
                      .+......+....+.|.+.++.|.+..+      .+.+.+...++..++.++.|+++||+|||+.+..+.+...++..+.
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  302 (406)
T PRK11551        229 YFFTLIVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL  302 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333334445556678888888998888      8999999999999999999999999999999888777666666666


Q ss_pred             hhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          130 GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ...++.+.+.+..++.|++.+...+ ..+++.|.+|+++|++++|+.+....+|..++|.++|.+.+
T Consensus       303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        303 AAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            6667777777777778876555445 48899999999999999999999999999999999999987

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.59  E-value=1.1e-14  Score=112.19  Aligned_cols=135  Identities=33%  Similarity=0.577  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc
Q 018727           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~  166 (351)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+. ..++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34556778899999999999999999999999888888888888889999999999999988776664 88999999999


Q ss_pred             chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhcccc
Q 018727          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (351)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (351)
                      +|++..++.+....+|..++|.+.+.+.+                ..+|+..+.+..+..++..+. .+..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999987                444555555555555444433 333444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.59  E-value=1.9e-14  Score=129.92  Aligned_cols=140  Identities=13%  Similarity=0.016  Sum_probs=111.2

Q ss_pred             HHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (351)
                      .+...+.........+.+.++++.++.+      .+++.+...++..++.++.|+++||+|||+.+.++.++..++.++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  287 (377)
T TIGR00890       214 FFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM  287 (377)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            3333333333444556667788888777      8888999999999999999999999999999998888888887766


Q ss_pred             hhhhhH--HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          130 GLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       130 ~~~~~~--~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ...++.  ..++...++.|++.+...+. +.++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       288 LFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            665532  33445567777776665554 7889999999999999999999999999999999999988

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.57  E-value=1.3e-13  Score=123.09  Aligned_cols=164  Identities=22%  Similarity=0.313  Sum_probs=136.1

Q ss_pred             HHHhhccccchhhhHHHHHHhh-cccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChH-HHHHHHHHHHHHHH
Q 018727           50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT  127 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~  127 (351)
                      .+.............|.+.++. |.++.+      .++..+...++..++.++.+++.||+|||+ .+..+..+..++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344445555666677666664 888877      999999999999999999999999999999 99999999999998


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccc
Q 018727          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (351)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw  206 (351)
                      .....++.+.+.+..++.|++.+...+. ..++.|..|+++|++.+++.+....+|..++|.+.+.+.+           
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-----------  326 (352)
T cd06174         258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-----------  326 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            8888888888999999999998877665 9999999999999999999999999999999999999987           


Q ss_pred             cccccCccchhHHHHHHHHHHHHHHHHhc
Q 018727          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (351)
                           ..+|+..+.+.++..++..+...+
T Consensus       327 -----~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         327 -----TGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             -----ccCcchHHHHHHHHHHHHHHHhee
Confidence                 445555567766666665554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.56  E-value=4.6e-14  Score=131.53  Aligned_cols=266  Identities=11%  Similarity=0.081  Sum_probs=153.3

Q ss_pred             HHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hhcC-hHHHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPVIIMGTA  120 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~  120 (351)
                      .+..+...+..+...++++ ++.+.+|++...      +|.+..+.-+..++..|+.|.++|    |+|| |+.++++.+
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i   85 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL   85 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence            3444444555556666665 455567999999      999999999999999999999999    6698 556666777


Q ss_pred             HHHHHHHHhhhhh------hHHHHHHHHHHhhhhcccchh-HHHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          121 SVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       121 ~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      ..+++..++...+      .+..+++..++.+++.....+ ..++..|+. ++++|.+..+......++|+.+.+.+...
T Consensus        86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~  165 (473)
T PRK10429         86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLP  165 (473)
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777755543322      123344444555665555444 478889998 58899999888777777776666655544


Q ss_pred             hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcc
Q 018727          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (351)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      +.+.       +|... - ..+|+....+.++..++. +++++..+|.+.....+.++++                +...
T Consensus       166 ~~~~-------~g~~~-~-~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------------~~~~  220 (473)
T PRK10429        166 FVNY-------VGGGD-R-GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS----------------HLTL  220 (473)
T ss_pred             HHHH-------hCCCc-h-hhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc----------------CCCH
Confidence            3321       11000 0 223444444444444433 3334446664321110000000                0011


Q ss_pred             cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----cccccc
Q 018727          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKID  346 (351)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~~  346 (351)
                      ...++.+++||.++..++..++..........+.+.|....     .+ +....+.+....+++.+++.     +..|++
T Consensus       221 ~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g  294 (473)
T PRK10429        221 KDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTLILFPRLVKSLS  294 (473)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            12334567888888887777777766655555555444332     22 34455555555444444433     233666


Q ss_pred             ccc
Q 018727          347 YRF  349 (351)
Q Consensus       347 ~r~  349 (351)
                      +|+
T Consensus       295 kk~  297 (473)
T PRK10429        295 RRI  297 (473)
T ss_pred             cHH
Confidence            554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.55  E-value=1.6e-13  Score=124.53  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      ++++...+..++............|.+.+++|.++.+      .+++.+...++..++.++.+++.||+|+|+.+.++.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            4455555555555566666677778777889999988      9999999899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..+...+.+++++.+.+++.+++.|+..+...+. ..++.+. |+++|+++.++++ ...++|..++|.++|.+.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887775 7888888 9999999999986 5778999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=6.1e-14  Score=131.42  Aligned_cols=289  Identities=17%  Similarity=0.215  Sum_probs=216.7

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+.+..+...+....+...+..+.+.|+++.++      .|++.+.+-++..+...+..+..-|.-|-+.+-+++++.++
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            455666777777777788889999999999999      99999999999999999999999998888999999999999


Q ss_pred             HHHHhhhh--------------------h---------------------------h----HH-HHHHHHHHhhhhcccc
Q 018727          125 FNTLFGLS--------------------V---------------------------N----FW-MAVLTRFLLGSLNGLL  152 (351)
Q Consensus       125 ~~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~g~~  152 (351)
                      +.+++++.                    +                           .    ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99887651                    0                           0    22 5667789999999888


Q ss_pred             hhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCC-CCccc---ccccccCccchhHHHHHHHHHH
Q 018727          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFS---SESLFGKFPYFLPCLCISLFAF  227 (351)
Q Consensus       153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~g---w~~~~~~~~~~~~~~~~~~~~~  227 (351)
                      .+. .+|+-|...+++-...+|+...+..+|.++|-++++++......+ ....+   -+..| -..||.-|++++.+.+
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLL  333 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHH
Confidence            886 999999999999999999999999999999999999987632222 11111   11223 4468888999998888


Q ss_pred             HHHHHHhccccccccCCCCCccchhhHHHhhhh--hh--hhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHH
Q 018727          228 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESA--SA--EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  303 (351)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
                      +..+.++++|...++...+.+..+.+....++.  +.  .....-.+-+...+++++||.+...++...+......++.+
T Consensus       334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t  413 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT  413 (735)
T ss_pred             HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence            888888888876654432211111110000000  00  00001122345677889999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-hhccccc
Q 018727          304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-HILPFKI  345 (351)
Q Consensus       304 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-~~~~~~~  345 (351)
                      ++|-|+++.     +|.++..+..+++..++..+. +-+++++
T Consensus       414 FlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~  451 (735)
T KOG3626|consen  414 FLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGL  451 (735)
T ss_pred             hhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccce
Confidence            999999987     899999999999877766654 4455543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.54  E-value=8.7e-13  Score=116.00  Aligned_cols=268  Identities=13%  Similarity=0.085  Sum_probs=169.5

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      ...+..+.+.+.+..+.+...+...-++ +.+.      .-|...++++.+....+++-|+.||+|-|....++..+-++
T Consensus        49 ~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i  121 (480)
T KOG2563|consen   49 AFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI  121 (480)
T ss_pred             HHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence            4455556666666666676666666677 5555      67888899999999999999999999999999999999999


Q ss_pred             HHHHhhhhh------hHH--HHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          125 FNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       125 ~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..+-..+.      .++  ....+..+.+..+-.+... ..+..-||++++|..+..+-..+..+|.+++.++...+..
T Consensus       122 Ga~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  122 GAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            987765542      333  4445556665555444445 4556679999999999999998999999999999888876


Q ss_pred             CCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCc
Q 018727          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (351)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
                      .....+ ...|.       ....++...+++.+. .+..+..++.|+.++...+.+..               +......
T Consensus       202 ~~~~~~-~~~~~-------~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~s  258 (480)
T KOG2563|consen  202 SSKDSE-DNSWL-------FFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKS  258 (480)
T ss_pred             CCCCcc-hhHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHH
Confidence            442110 11111       111233333333322 22333333433322221111110               1123456


Q ss_pred             ccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc-cccccc
Q 018727          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP-FKIDYR  348 (351)
Q Consensus       275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~-~~~~~r  348 (351)
                      .+++++|+++...++.+........+.++.+..-+.    .  -|++...+|.......++++++.+. +.+-||
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~----~--sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk  327 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC----P--SGYEGVFAGYIGALMIVAGMLGALASGIIADK  327 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc----c--ccCCccccchhHHHHHHHHHHHHHHHHhhhhh
Confidence            778899999988888877766655555544442222    2  3555567777777777777665444 345554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=2.7e-13  Score=122.50  Aligned_cols=155  Identities=15%  Similarity=0.294  Sum_probs=119.4

Q ss_pred             hhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727           61 FPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (351)
Q Consensus        61 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (351)
                      ....|. +.+++|.++.+      .+++.+...+...++.++.|++.||+|||+++.++.++..+........++.+.++
T Consensus       219 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALL  292 (375)
T ss_pred             HhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444 45678888887      88887777777788889999999999999998888776666655555667778788


Q ss_pred             HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhH
Q 018727          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (351)
                      +.+++.|++.+...+. ..++.|..|+ ++++++++++....+|..++|.+++.+.+                ..+|+..
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~  355 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAV  355 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhH
Confidence            8888888887766664 7788898876 46799999999999999999999999987                4556666


Q ss_pred             HHHHHHHHHHHHHHHhcccc
Q 018727          219 CLCISLFAFGVTIAAFWLPE  238 (351)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e  238 (351)
                      +...++..++..+...+++|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       356 YWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHheecC
Confidence            67777666666666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09669 putative symporter YagG; Provisional

Probab=99.53  E-value=1.9e-13  Score=126.55  Aligned_cols=233  Identities=16%  Similarity=0.070  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChH-
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-  113 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-  113 (351)
                      .++.+.-.+..+...........++ +++.+++|++...      +|.+.++..+..++..|+.|+++||    +|||| 
T Consensus         8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp   81 (444)
T PRK09669          8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP   81 (444)
T ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch
Confidence            3433333333333333333444444 5667789999999      9999999999999999999999998    78754 


Q ss_pred             HHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHhhhhcccc-hhHHHHHhhhc-cccchhhhHhHHHHHHHhHHHH
Q 018727          114 VIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLL-GPIKAYACEIF-REEHQALGLSTVSTAWGIGLII  185 (351)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~  185 (351)
                      .++.+.+..+++..+....+      ....+++..++.+.+.... .|..++.+|+. ++++|.+..+.......+|..+
T Consensus        82 ~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i  161 (444)
T PRK09669         82 YLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI  161 (444)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666654443332      2344555555556544343 34578889988 5688998888888888888888


Q ss_pred             HHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhh
Q 018727          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEV  264 (351)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (351)
                      ++.+...+...       ++.. .. +.+|+..+.+.+++.++.. ++++..+|......   ++               
T Consensus       162 ~~~~~~pl~~~-------~~~~-~~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~---~~---------------  214 (444)
T PRK09669        162 VSVIALPLVDI-------LGKG-DE-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV---DN---------------  214 (444)
T ss_pred             HHHHHHHHHHH-------hCCC-ch-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC---cC---------------
Confidence            87766555431       1110 00 3456655555555544443 33444455322110   00               


Q ss_pred             hhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHH
Q 018727          265 KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW  308 (351)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                         +.......+.++|||+++.+++..++..............|
T Consensus       215 ---~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~  255 (444)
T PRK09669        215 ---SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYY  255 (444)
T ss_pred             ---CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence               00011235567899998888777666655554444444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.53  E-value=7.9e-14  Score=128.12  Aligned_cols=131  Identities=18%  Similarity=0.141  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~  162 (351)
                      .+++.++..++..++.+++|+++||+|||+.+..+.++.+++..+.+++++.+.+++.+++.|++.+...+ ...++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888988899999999999999999999999998888888888888888999888889999887766555 47889999


Q ss_pred             ccccchhhhHhH-HHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH
Q 018727          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (351)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (351)
                      +|++.|++..+. ++....+|.+++|.+.|.+.+                ..+|+..+...+++.++..
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------------~~G~~~~f~~~~~~~~i~~  396 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------------SIGFQGTYLILGGIVLLFT  396 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------------hhCchHHHHHHHHHHHHHH
Confidence            999999988765 677888999999999999998                4445555566555555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=3.5e-13  Score=123.70  Aligned_cols=166  Identities=17%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             chhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727           59 SLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (351)
Q Consensus        59 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      ....+.|.+.++ +|.+..+      .+++.+...++..++.++.+++.||.++++.+..+.++.+++.++....++.+.
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  314 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWIL  314 (417)
T ss_pred             hHHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHH
Confidence            345566766666 8988888      999999999999999999999999988888888888888877777777788777


Q ss_pred             HHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (351)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (351)
                      ..+..++.|++.+...+. .+++.|..|++.||+++++++....+|..+||.+.|.+.+                .++++
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~  378 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPV  378 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchh
Confidence            778888888887766665 7889999999999999999999999999999999999998                44444


Q ss_pred             hHHHHHHHHHH-HHHHHHhccccccccCCCC
Q 018727          217 LPCLCISLFAF-GVTIAAFWLPETLHRHNDD  246 (351)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~  246 (351)
                      ..+...++..+ +..+....+|+.++.+.++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        379 ASASASGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            44444444333 3445556667766544433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.52  E-value=2.3e-13  Score=121.20  Aligned_cols=269  Identities=14%  Similarity=0.110  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +..+......+...+..+...|+.+...++ .|++.++      +|.+.++..+...+.+++.|.++||+|.||-++...
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            456667777777778888889999877765 8999999      999999999999999999999999999777655443


Q ss_pred             HHHHH--HH-HHhhhhhhH-HHHHHHHHHhhhhccc----chhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          120 ASVVI--FN-TLFGLSVNF-WMAVLTRFLLGSLNGL----LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       120 ~~~~~--~~-~~~~~~~~~-~~l~~~r~l~G~~~g~----~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      .+..+  +. ....+.+-. ..+.++-++.|+..+.    ..++ -+++. ... ++.+.-.|-.-..+++|.+++..++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~e-r~s-r~~~feYG~~R~wGSig~ai~s~~~  158 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAE-RVS-RRNGFEYGRARMWGSIGFAIASLLA  158 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHH-HHH-HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHH-HHH-HHhcCCcchHHHHhhHHHHHHHHHh
Confidence            22221  22 221222111 1122233333333222    2222 33332 322 3345667778889999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc-cccccCCCCCccchhhHHHhhhhhhhhhhhhh
Q 018727          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP-ETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (351)
                      |.+.+                 .+....+++..+.+++..++.+..+ +.++.....+. .++++             ++
T Consensus       159 G~L~~-----------------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-~~~~~-------------~~  207 (412)
T PF01306_consen  159 GILFN-----------------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-LGAKK-------------DK  207 (412)
T ss_dssp             HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-SSS-----------------
T ss_pred             heeee-----------------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-cccCC-------------CC
Confidence            98875                 2223444555544444444433333 32222111111 00000             00


Q ss_pred             cccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhcccc
Q 018727          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPFK  344 (351)
Q Consensus       270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~~  344 (351)
                      .+.+...+++|+|++|.+.+...........+.+.++.|.......  .+.+....|++.+.-.+.-++     -.+..|
T Consensus       208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r  285 (412)
T PF01306_consen  208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMMFFSPWLINR  285 (412)
T ss_dssp             --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1112345788999999987766666566666666677776654222  345666778877765544433     224447


Q ss_pred             cccccc
Q 018727          345 IDYRFF  350 (351)
Q Consensus       345 ~~~r~~  350 (351)
                      ++.|..
T Consensus       286 ig~k~~  291 (412)
T PF01306_consen  286 IGAKNL  291 (412)
T ss_dssp             H-HHHH
T ss_pred             cChHhH
Confidence            777753

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.52  E-value=9.7e-13  Score=119.77  Aligned_cols=179  Identities=12%  Similarity=0.080  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +..+.+....++..........+.|.+.+++|.+..+      .+...+.+.++..++.++.|++.||+|||+.+..+..
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~  278 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALV  278 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            3344444444444555556667788777788999888      8999999999999999999999999999999988877


Q ss_pred             HHHHHHHHhhh-hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          121 SVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       121 ~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      +..++..+... .++...+  .-++.|++.+...+ ......+.++ +++|++.+++.+....++..++|.+.|++.+..
T Consensus       279 l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~  356 (393)
T PRK09705        279 LQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS  356 (393)
T ss_pred             HHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77776654433 2222222  22456777666555 3555566664 678999999999999999999999999999832


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhcccccccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHR  242 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~  242 (351)
                      +               +|...+.+..+..++.+ +...+.||++++
T Consensus       357 g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        357 G---------------NYLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             C---------------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            2               13444455554444443 335566666543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.51  E-value=4.6e-13  Score=121.48  Aligned_cols=148  Identities=13%  Similarity=0.086  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChH--HHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIM  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~  117 (351)
                      +.++......++..........+.|.+. ++++.+..+      .+++.+...++..++.++.|+++||+|||+  ....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            4455555666666666666777777655 457888877      889999999999999999999999999996  1111


Q ss_pred             ------HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          118 ------GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       118 ------~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                            +.++..+........++.+..+....+.+++.+ ..+ ...++.|.+|+++|++++++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                  111111111112222344444444444444455 444 589999999999999999999999999999999999


Q ss_pred             hhhcC
Q 018727          191 GFLAQ  195 (351)
Q Consensus       191 ~~l~~  195 (351)
                      +.+.+
T Consensus       368 g~l~~  372 (399)
T TIGR00893       368 GAIAA  372 (399)
T ss_pred             hhhcc
Confidence            99988

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.51  E-value=1.3e-13  Score=127.06  Aligned_cols=247  Identities=15%  Similarity=0.119  Sum_probs=161.5

Q ss_pred             HHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hhcChHH-HHHHHHHHHHHHHHhhhh-h----
Q 018727           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLS-V----  133 (351)
Q Consensus        64 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~----  133 (351)
                      .+++.+.+|+++..      .+++..+..+..++..|+.|.++|    |+||||. ++++....+++..++... +    
T Consensus        25 ~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~   98 (428)
T PF13347_consen   25 LYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS   98 (428)
T ss_pred             HHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence            35666777999988      999999999999999999999999    8998765 556777777777666654 3    


Q ss_pred             ---hHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc
Q 018727          134 ---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (351)
Q Consensus       134 ---~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~  208 (351)
                         ....+.+..++..++...... ..++..|+.+ +++|.+..+.-+.+..+|.++...+.+.+.+..++...      
T Consensus        99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~------  172 (428)
T PF13347_consen   99 FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT------  172 (428)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc------
Confidence               122345555555666555544 5889999997 57899999999999999998777777777652221100      


Q ss_pred             cccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHH
Q 018727          209 LFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  287 (351)
                         ..+|+....+.+++.++.. +..+..+|.++...++++                   +.......+++++||+++..
T Consensus       173 ---~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l  230 (428)
T PF13347_consen  173 ---SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRIL  230 (428)
T ss_pred             ---chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHH
Confidence               0245665566555555543 445556761111111100                   12234457788999999999


Q ss_pred             HHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh-----hhcccccccccc
Q 018727          288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT-----HILPFKIDYRFF  350 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~-----~~~~~~~~~r~~  350 (351)
                      ++..++............+.|.++.     .+.+ ...+.+.....+..++     ..+..|+++|+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence            8888888888877777777777665     3433 3344444443333333     333346666653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=9.6e-14  Score=128.69  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHHHHH-
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM-  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~-  117 (351)
                      +.++......++..+.......+++.+.+++|.+..+      .+++.++..++..+++++.|+++||.  ++|+...+ 
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  314 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS  314 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            3344444445555555556666777777888998888      99999999999999999999999983  33433333 


Q ss_pred             -HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                       +.++.+++.++....++++.+++.+++.|++.+...+. ..++.|.+|++++++++++++....+|.++||.++|.+.+
T Consensus       315 ~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       315 FALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence             33444444555566778888888999999988777664 8899999999999999999999999999999999999987

>PRK03699 putative transporter; Provisional

Probab=99.51  E-value=4.6e-13  Score=121.99  Aligned_cols=174  Identities=12%  Similarity=0.096  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      .++.+.+..++..........++|.+. +++|++..+      .+.+.+.+.++..++.++.|+++||+|||+.+.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~  279 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG  279 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence            344444445554455556667778766 567999888      8999999999999999999999999999999888777


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +..+...+....++.+.+.+..++.|++.+...+ ...+..|..| +++++..+....+..+|..++|.+.|++.+    
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~----  354 (394)
T PRK03699        280 LALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA----  354 (394)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH----
Confidence            7776666666666766666677778876555444 4667777766 446778888888889999999999999998    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccc
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (351)
                                  ..+++..++..+++.++..+....+++
T Consensus       355 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        355 ------------HFGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             ------------HhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence                        333444445555555444444444443

>TIGR00897 2A0118 polyol permease family

Probab=99.51  E-value=7.7e-13  Score=120.84  Aligned_cols=173  Identities=14%  Similarity=0.237  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH-HHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~  119 (351)
                      +.++...+..++..........+.|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+. .+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  295 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGG  295 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            3344444445555555556667788888889998888      888888889999999999999999999988764 333


Q ss_pred             HHHHHHHHHhh-----hhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          120 ASVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       120 ~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      +...++.+...     ..++.+..++..++.|++.+...+....+.|..| ++|++++|+.+....+|..++|.+++.+.
T Consensus       296 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  374 (402)
T TIGR00897       296 VGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI  374 (402)
T ss_pred             HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333322222     1245666667778888876655555556677655 58999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (351)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                ..++..++.+.+++.++..+...++
T Consensus       375 ~----------------~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       375 G----------------FFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             h----------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence            8                5556666677766666655554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.50  E-value=6.7e-13  Score=120.86  Aligned_cols=155  Identities=21%  Similarity=0.210  Sum_probs=120.5

Q ss_pred             cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (351)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      .......+.+.+.++.+.+  +      .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++....++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA  302 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence            3334455566666666554  3      4555667777888999999999999999999999888888888777777888


Q ss_pred             HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (351)
                      +.+++..++.|++.+...+. ...+.|.+|+++|+++.++.+....+|..++|.+.+.+.+                ..+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~----------------~~g  366 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT----------------SFG  366 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            88888888999887766654 7788899999999999999999999999999999999998                444


Q ss_pred             chhHHHHHHHHHHHHHHHHh
Q 018727          215 YFLPCLCISLFAFGVTIAAF  234 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~  234 (351)
                      |+..+...+++.++..+..+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        367 YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             chHHHHHHHHHHHHHHHHHH
Confidence            55555666665555544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.50  E-value=6.5e-13  Score=124.75  Aligned_cols=131  Identities=20%  Similarity=0.245  Sum_probs=102.3

Q ss_pred             chhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh--hhH
Q 018727           59 SLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNF  135 (351)
Q Consensus        59 ~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~  135 (351)
                      ....++|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence            3456677776 588999888      9999999999999999999999999999999888876666555433322  333


Q ss_pred             HHHHHHHHHhhh-hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          136 WMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       136 ~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.+.+..++.++ +.+.....+.++.|.+|+++|++++++.+....+|..++|.++|.+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            444444444443 344333457889999999999999999999999999999999999998

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=5e-13  Score=124.46  Aligned_cols=149  Identities=15%  Similarity=0.160  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.++.+++..++..........++|.+. +++|++..+      .++..+...++..++.+++|+++||+|||+.+....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            3455555555555555556677788554 668999888      889999999999999999999999999998776654


Q ss_pred             HHHHHHHH--HhhhhhhHHHHHHHHHHhhhh-cccchhHHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhhhhcC
Q 018727          120 ASVVIFNT--LFGLSVNFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  195 (351)
Q Consensus       120 ~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~  195 (351)
                      .+..++..  .....++.....+.+++.|++ .+..........|.+|+++||++.|+.+....+ |..++|.+.|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        332 ALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            44333322  222334565666777777764 333333356677999999999999999988886 77999999999987

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.49  E-value=8.2e-13  Score=119.81  Aligned_cols=153  Identities=19%  Similarity=0.270  Sum_probs=113.2

Q ss_pred             ccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHH
Q 018727           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (351)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~  136 (351)
                      ......++|.+.++.|.+..+      .+++.+...++..+++++.|++.||+|+|+++..+..+..++.+...  . ..
T Consensus       216 ~~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~  286 (381)
T PRK03633        216 LGSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QA  286 (381)
T ss_pred             HHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hH
Confidence            334445678777788888877      88888899999999999999999999999999888777776654432  2 22


Q ss_pred             HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccc
Q 018727          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (351)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (351)
                      ......++.|++.+...+ ....+.|..|+++++...+..+...++|..+||.++|.+.+                ..++
T Consensus       287 ~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------------~~g~  350 (381)
T PRK03633        287 AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------------NYSD  350 (381)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhCc
Confidence            334456667765544455 47888899998888888888888999999999999999998                3344


Q ss_pred             hhHHHHHHHHHHHHHHHHh
Q 018727          216 FLPCLCISLFAFGVTIAAF  234 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~  234 (351)
                      +..+.+.+.+.++..+..+
T Consensus       351 ~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        351 NLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            4455665555554443333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.49  E-value=9.8e-13  Score=119.68  Aligned_cols=148  Identities=13%  Similarity=0.145  Sum_probs=110.7

Q ss_pred             hhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Q 018727           62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAV  139 (351)
Q Consensus        62 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~  139 (351)
                      .+++ .+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+... +..+..++. .+....++.+.+.
T Consensus       226 ~~~~~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  298 (390)
T PRK03545        226 SYIEPFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLS  298 (390)
T ss_pred             HHHHHHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHH
Confidence            3444 445557888888      899999999999999999999999999887544 444333333 3334566777777


Q ss_pred             HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhH
Q 018727          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (351)
                      +..++.|++.+...+. ...+.|..| ++|++++++++....+|..+||.++|.+.+                .++++..
T Consensus       299 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~  361 (390)
T PRK03545        299 VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSI  361 (390)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHH
Confidence            8888888886665554 677778776 578999999999999999999999999998                5556666


Q ss_pred             HHHHHHHHHHHHHHH
Q 018727          219 CLCISLFAFGVTIAA  233 (351)
Q Consensus       219 ~~~~~~~~~~~~~~~  233 (351)
                      +...+++.++..+..
T Consensus       362 ~~~~~~~~~~~~~~~  376 (390)
T PRK03545        362 GYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677666666554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.49  E-value=1.4e-12  Score=121.42  Aligned_cols=174  Identities=17%  Similarity=0.157  Sum_probs=120.8

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      ...+..+......+....+.|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+.++.++.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  361 (481)
T TIGR00879       288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI  361 (481)
T ss_pred             HHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            333444444444555666778888889998877      78888888889999999999999999999999988877777


Q ss_pred             HHHHhhh-----hh------hHHHHHHHHHHhhh-hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          125 FNTLFGL-----SV------NFWMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       125 ~~~~~~~-----~~------~~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      +.++...     .+      +...+....++.+. +.+.......++.|.+|+++|++++++.+....+|.+++|.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665542     11      22222233333222 333322247788999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhcccccc
Q 018727          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETL  240 (351)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~  240 (351)
                      +.+       ..+|+..|         .+.++++++..+ ..++.||++
T Consensus       442 ~~~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       442 MLE-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHH-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence            887       33444333         454544444433 345566654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.49  E-value=2.9e-12  Score=114.54  Aligned_cols=176  Identities=18%  Similarity=0.228  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhH-HHHHHhhc----ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~  114 (351)
                      |.++.++..-+..-++++.+...+ .++..+++    +++++      +.-+.+.+...--...+++||++||+ |+|++
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            557778888899999988887776 45666666    77777      66666666666667889999999995 99999


Q ss_pred             HHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccc--hhhhHhHHHHHHHhHHHHHHHh
Q 018727          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEH--QALGLSTVSTAWGIGLIIGPAL  189 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~  189 (351)
                      ++.+.++..++.++.+.+.  +...++++-.+.++|.|.+-+ ...++.|.+|+++  |-..+++++.+.++|+.++|++
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999998874  678888888888899999877 5999999998643  6677888999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcccc
Q 018727          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (351)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (351)
                      .+++.+                +.+|...|..+++-..+.++.+...+.
T Consensus       175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999998                556666666666666666655555543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.48  E-value=1.1e-12  Score=119.89  Aligned_cols=159  Identities=18%  Similarity=0.232  Sum_probs=120.9

Q ss_pred             cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018727           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (351)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      ....+.++.+.++.+.+..+  .....+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+.....++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQ  313 (408)
T ss_pred             HHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455566555554332222  1122455666677788889999999999999999999988888777777777778888


Q ss_pred             HHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccch
Q 018727          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (351)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (351)
                      +++.+++.|++.+...+. ..++.+..|+++|++.+++.+....+|..+||.++|.+.+                ..+|+
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~~g~~  377 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------NYGFR  377 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------hcchh
Confidence            888999999988877764 7788889999999999999999999999999999999988                45566


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 018727          217 LPCLCISLFAFGVTIAAF  234 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~  234 (351)
                      ..+.+.+++.++..+..+
T Consensus       378 ~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        378 AVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666777666666544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.4e-12  Score=113.93  Aligned_cols=159  Identities=13%  Similarity=0.119  Sum_probs=125.7

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHH-
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPV-  114 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~-  114 (351)
                      +.+.++.+++..++....++.+.-+.|.+ .|..|++..+      +++..+.+-++...|.+++||+|||+  |||.. 
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            34566778888888889999999999854 5567999988      99999999999999999999999996  67754 


Q ss_pred             HHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhhhh-cccchhHHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhh
Q 018727          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALG  190 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~  190 (351)
                      -++.+++..++.+..-.++  |+....++-++.|+. .|....+.....|..|++--|++.|+...+..+ |.+.+....
T Consensus       324 ~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~  403 (448)
T COG2271         324 ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL  403 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence            4455555555555555544  457777777888886 455544577888999999999999999998888 999999999


Q ss_pred             hhhcCCCCCCCCcccccccc
Q 018727          191 GFLAQPAEKYPNLFSSESLF  210 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~  210 (351)
                      +++.+       .+||.+.|
T Consensus       404 g~i~d-------~~gW~g~F  416 (448)
T COG2271         404 GYIAD-------TWGWDGGF  416 (448)
T ss_pred             eeeEe-------cCCCcchH
Confidence            99988       46666555

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.46  E-value=2.1e-12  Score=121.36  Aligned_cols=187  Identities=14%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             HHhhccccchhhhHHHHHHhhcccccccchh-----hhhHH-HHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIG-----SYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      +...+..+....+.|.+.++.|.+..+....     ..... ...+..++..++.++.++++||+|||++++++..+.++
T Consensus       298 ~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~  377 (502)
T TIGR00887       298 FLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV  377 (502)
T ss_pred             HHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Confidence            3333344455556788888888875431000     00011 12334445667888999999999999999888877776


Q ss_pred             HHHHhhhhhh----HHHHHHHHHHhhh-hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          125 FNTLFGLSVN----FWMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       125 ~~~~~~~~~~----~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      +..+.+...+    ...+...-+...+ +.+.......+.+|.+|++.|++++++.+....+|++++|.+.+++.+..++
T Consensus       378 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~  457 (502)
T TIGR00887       378 LFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP  457 (502)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc
Confidence            6655543221    1111111111222 2233333477889999999999999999999999999999999998862211


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccC
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH  243 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  243 (351)
                      .   .|+..   ..++...+.+.++..++..+..+++||++.+.
T Consensus       458 ~---~~~~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~  495 (502)
T TIGR00887       458 T---KGYPT---GIWMGHVLEIFALFMFLGILFTLLIPETKGKS  495 (502)
T ss_pred             c---ccccc---cccchHHHHHHHHHHHHHHHHheEeccCCCCC
Confidence            0   00000   12233344555555555555567789977643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09952 shikimate transporter; Provisional

Probab=99.46  E-value=3.5e-12  Score=117.81  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=113.5

Q ss_pred             HHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727           50 VLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~  128 (351)
                      .++..+..+....+.|.+ .+++|.+...      ...+.....+...++.++.|+++||+|||+++..+.++..++.+.
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~  332 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFP  332 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            333344445555666654 4567777655      444555556667888899999999999999988877665554432


Q ss_pred             hhh---h-hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727          129 FGL---S-VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPN  202 (351)
Q Consensus       129 ~~~---~-~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (351)
                      ...   . ++.+.+++..++.+++.+...+ .+++++|.+|++.|+++.++.+ .+..+|+.++|.+.+++.+..     
T Consensus       333 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-----  407 (438)
T PRK09952        333 FFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-----  407 (438)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            222   1 2333444455556676665554 5889999999999999999854 445589999999999998621     


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHHHHhccccc
Q 018727          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (351)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (351)
                               ..+|..++...++..++..+..+.++|+
T Consensus       408 ---------~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        408 ---------GGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence                     1235556666666666666666666664

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.7e-14  Score=118.85  Aligned_cols=258  Identities=16%  Similarity=0.144  Sum_probs=166.5

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVV  123 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~  123 (351)
                      ..|+..+...+++........++..+.+++..+      ..++-+++..-..+.++++|++.|| +|-|...++-+....
T Consensus        48 ~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   48 FMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            344444555556555566666777777777777      7888889999999999999999996 677766666666666


Q ss_pred             HHHHHhhh---hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          124 IFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       124 ~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      ++.++++.   .+.+|++..+|++.|+|.-...++ +.+...||..|+-+.++|+......+|+.+--.+.+++.+..+.
T Consensus       122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~  201 (459)
T KOG4686|consen  122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR  201 (459)
T ss_pred             HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence            67666654   688999999999999987667776 89999999999999999999999999998877777777662211


Q ss_pred             CCCcccccccccCccchhH---HHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccc
Q 018727          200 YPNLFSSESLFGKFPYFLP---CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                               .|+..+-...   ..+....+...+++...+--       .++..    |++-+    .++....+..+..
T Consensus       202 ---------~~~~~ghT~LG~~l~~~~~tc~~slical~lg~-------~D~rA----erilh----~e~g~~Ge~pkLt  257 (459)
T KOG4686|consen  202 ---------MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL-------SDDRA----ERILH----LEEGFLGEEPKLT  257 (459)
T ss_pred             ---------hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHH----HHHHh----hhcCcccCCcccc
Confidence                     0100000000   00001111111111111100       00000    00000    0000000001111


Q ss_pred             ccc-cccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHH
Q 018727          277 SLL-KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVD  337 (351)
Q Consensus       277 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~  337 (351)
                      +.. -.|++|.+.+..++++...+.+...-+.+.++.     +|+|+..++.+.+.......
T Consensus       258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isa  314 (459)
T KOG4686|consen  258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISA  314 (459)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhh
Confidence            111 247899999999999999999999999998887     99999999988886554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.44  E-value=7.2e-13  Score=120.29  Aligned_cols=147  Identities=20%  Similarity=0.215  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      ++......++..........+.|.+. +++|.+..+      .+.+.....++..++.++.|+++||+|||+.+..+..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            44444444555555555666777665 667888887      88888889999999999999999999999987755444


Q ss_pred             HHHHH--HHhhh--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcC
Q 018727          122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       122 ~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ..+..  .....  .++.+.+....++.|++.+...+ ...++.|.+|+++|+++.++. +....+|..++|.+++.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            43322  12222  24566666677778887666555 589999999999999999974 56677899999999999988

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09848 glucuronide transporter; Provisional

Probab=99.44  E-value=3.4e-12  Score=118.28  Aligned_cols=251  Identities=18%  Similarity=0.130  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh----cChHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKPV  114 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~  114 (351)
                      .+..+.-.+..+...+..+...+++ +++.+.+|++..+      +|.+.+...+..++..++.|+++||.    ||||.
T Consensus         7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~   80 (448)
T PRK09848          7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRP   80 (448)
T ss_pred             HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchH
Confidence            3443333334444444444444545 4556667999999      99999999999999999999999996    77765


Q ss_pred             H-HHHHHHHHHHHHH-hhh----hh--hHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHH-----
Q 018727          115 I-IMGTASVVIFNTL-FGL----SV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAW-----  179 (351)
Q Consensus       115 ~-~~~~~~~~~~~~~-~~~----~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~-----  179 (351)
                      . .++.+...+...+ ...    ..  .....++..++.+++.+...+ ..++..|... +++|.+..+.-..+.     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~  160 (448)
T PRK09848         81 FLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV  160 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            4 5554444433333 221    11  122334444556666666554 4666666554 467887766554433     


Q ss_pred             HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhh
Q 018727          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALE  258 (351)
Q Consensus       180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  258 (351)
                      .++..++|.+++....       ..       ..+|.....+.++..++ .+++....||+.+.+.++            
T Consensus       161 ~~~~~~~p~i~~~~g~-------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~------------  214 (448)
T PRK09848        161 CLAFLIGPSIKNSSPE-------EM-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ------------  214 (448)
T ss_pred             HHHHHHHHHHHHhCCC-------ch-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC------------
Confidence            3455566666543321       00       00111111122222222 223333445543211100            


Q ss_pred             hhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHH
Q 018727          259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVD  337 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~  337 (351)
                                ......++.++|||.++...+..++............+.|.++.     +|.++...++......++.+
T Consensus       215 ----------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~  278 (448)
T PRK09848        215 ----------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTV  278 (448)
T ss_pred             ----------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHH
Confidence                      00111356688999999888888877777777777777666655     66666555554443333333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.42  E-value=2.6e-11  Score=104.77  Aligned_cols=243  Identities=14%  Similarity=0.084  Sum_probs=149.6

Q ss_pred             HhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh
Q 018727           52 CTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (351)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~  131 (351)
                      +...+-....|+...+.+++|+++.+      ++.+.........+..++.|.++||+|||+..++.+++..++++.. .
T Consensus        45 La~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~  117 (354)
T PF05631_consen   45 LAMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-H  117 (354)
T ss_pred             HHHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-h
Confidence            33445556678887777899999999      9999999999999999999999999999999999999999888644 5


Q ss_pred             hhhHHHHHHHHHHhhhhcccchhH--HHHHhhhc----cccchhhhHhHHH-HHHHhHHHHHHHhhhhhcCCCCCCCCcc
Q 018727          132 SVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIF----REEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (351)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~g~~~~~--~~~~~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (351)
                      .++++.++++|++.|++......+  .=++.|.-    |++..+..++... ...++-.+++.+++-.+.+..       
T Consensus       118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~-------  190 (354)
T PF05631_consen  118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF-------  190 (354)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-------
Confidence            678999999999999998876654  33566653    3333333333222 222333444555555554411       


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHHHh-ccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (351)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (351)
                             ..+...||.....+.++..+.+. .-+|+.....+..+..+                  .....++.++++|+
T Consensus       191 -------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~------------------~~~~a~~~i~~d~r  245 (354)
T PF05631_consen  191 -------GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSG------------------SFREAWRAILSDPR  245 (354)
T ss_pred             -------CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHH------------------HHHHHHHHHHcCch
Confidence                   22335566766666655544433 34555433221111000                  01123455667788


Q ss_pred             hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      ++.+.+...++......+..+.+.-+.     . .+ ...--|++++.+-++.+++.
T Consensus       246 il~LG~~qslFE~smy~FVflWtPaL~-----~-~~-~~~P~GlIFssFM~a~MlGS  295 (354)
T PF05631_consen  246 ILLLGLIQSLFEGSMYLFVFLWTPALD-----P-DD-EELPLGLIFSSFMVAMMLGS  295 (354)
T ss_pred             hHHHHHHHHHHHHHHHHheeeeeceec-----C-CC-CCCCchHHHHHHHHHHHHHH
Confidence            888777777776665555433332222     1 11 12225666666555555544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=6e-12  Score=114.21  Aligned_cols=147  Identities=15%  Similarity=0.127  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      .++......++............|.+.++.|.+..+      .+.+.+...++..+..++.|++.||+|+|+.+..+.++
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~  279 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAIC  279 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            344333434443444444555666666788988887      89888888888899999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHH-HHHHhHHHHHHHhhhhhcC
Q 018727          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+++.+..+..++.+.+++..++.|++.+...+. ..++.+. +++++++..+.++ ....+|..+||.++|.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        280 GVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888889998899999999987776664 7777776 5666788888875 5567888999999999998

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=2.7e-12  Score=119.11  Aligned_cols=171  Identities=14%  Similarity=0.100  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHHH-H
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-I  116 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~-~  116 (351)
                      +.++...+..++.....+....++|.+.++ +|++..+      .+++...+.++..++.++.|+++||+  |||+.. .
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~  326 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  326 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence            334444455444444455566778876655 6888877      88888888889999999999999999  555432 2


Q ss_pred             HHHHHHHHHHHHhhh--hhhHHHHHHHHHHhhhhc-ccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHH-HHHhhhh
Q 018727          117 MGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGF  192 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~-g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~  192 (351)
                      ....+..++.++...  ..+.+...+..++.|.+. +.......+..|.+|++.||++.|+.+....+|+.+ +|.+.+.
T Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~  406 (452)
T PRK11273        327 FFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  406 (452)
T ss_pred             HHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence            222222333222222  233444444444445432 222223456789999999999999998888887654 7999999


Q ss_pred             hcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (351)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (351)
                      +.+                ..+|+..+.++++..++.++..
T Consensus       407 l~~----------------~~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        407 TVD----------------FFGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHH----------------HhcchHHHHHHHHHHHHHHHHH
Confidence            988                3445555565555555544433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.42  E-value=3.3e-12  Score=112.08  Aligned_cols=195  Identities=16%  Similarity=0.088  Sum_probs=131.5

Q ss_pred             hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC-cccccc
Q 018727          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSES  208 (351)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~gw~~  208 (351)
                      ..++++.++++.++.|.|.+...+. +++++++.++|++.+.+++.+.+.++|..++|.+++.+......... ..+-..
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4568999999999999999998885 99999999999999999999999999999999999988742110000 000000


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHHhc--cccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHH
Q 018727          209 LFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  286 (351)
                      .. ...|+.++.+.++..++..+.+.+  +||.++++   ++  +..              + ++....++.+++|.++.
T Consensus        86 ~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~---~~--~~~--------------~-~~~~~~~~~~~~~~~~l  144 (310)
T TIGR01272        86 AE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD---VA--RVS--------------S-GDTTQKTSAFQFTHLVL  144 (310)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc---cc--ccc--------------c-ccccchhhHHhhHHHHH
Confidence            00 134566666554444433333333  34422111   00  000              0 00011234577888888


Q ss_pred             HHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-----cccccc
Q 018727          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-----KIDYRF  349 (351)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-----~~~~r~  349 (351)
                      ..+..+++.....+..++++.|+.+.   ..+|+++.+.+...+.+..+.+++++.+     |+++|+
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~  209 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR  209 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            88888888889999999999999753   1168999999999999998888888666     555544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=6.9e-12  Score=115.73  Aligned_cols=168  Identities=14%  Similarity=0.056  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cCh-HHHHH-
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRK-PVIIM-  117 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr-~~~~~-  117 (351)
                      ++.+....++..........++|.+. +++|.+..+      .+...+.+.++..++.++.|+++||+  ++| +.... 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            44444444444444555666777666 567998888      88889999999999999999999999  333 32222 


Q ss_pred             --HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcc-cchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          118 --GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG-LLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       118 --~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                        +..+..++..... ..+.....+..+..|++.. .........+|.+|+++|++++|+.+....+|..++|.+.+++.
T Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence              1121221212122 2233333333444454322 22223556789999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (351)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (351)
                      +                ..+|...+...+++.++..+..
T Consensus       398 ~----------------~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        398 E----------------IWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             H----------------hcccHHHHHHHHHHHHHHHHHH
Confidence            8                4455555566666655544433

>TIGR00895 2A0115 benzoate transport

Probab=99.41  E-value=2.2e-12  Score=117.29  Aligned_cols=143  Identities=20%  Similarity=0.257  Sum_probs=110.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .++...++..........+.|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+....+....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       254 LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            334444444455555666778888888998888      89999999999999999999999999999555444443333


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      ..++....++.+.+++..++.|++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.++|.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       328 AVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3333333556667777788889887766664 89999999999999999999999999999999999875

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=1.2e-11  Score=114.06  Aligned_cols=180  Identities=13%  Similarity=0.174  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh--HHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~  117 (351)
                      +.+....+..++..-+.+.+..... +..+++|++..+      ...+..+..+..++|++++|++.||+|.|  +++.+
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3344444444544444444444444 445589999998      88888888899999999999999999999  88888


Q ss_pred             HHHHHHHHHHHhhh--------hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727          118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (351)
Q Consensus       118 ~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (351)
                      +++++.+..+...+        .++.+.+++.-++.|+..|...+. .++.+|+.|+++.+..+|++.......+.+||+
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            87777555544444        567788899999999998887775 999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      +.+.+.+.+++               .|..+....++.++.+++..+++.++.
T Consensus       435 l~g~i~~~tg~---------------~r~g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  435 LFGLITDATGS---------------QRYGFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             HHHHHHHHhCC---------------chhHHHHHHHHHHHHHHHHhhccchhh
Confidence            99999984432               344455555666666666666665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.40  E-value=1.2e-12  Score=112.04  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHhhhhcccchhHHHHHhhhcccc
Q 018727           91 FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM----AVLTRFLLGSLNGLLGPIKAYACEIFREE  166 (351)
Q Consensus        91 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~g~~~~~~~~~~~~~~~~  166 (351)
                      ..+..+.|.++.+++.||+|||+++..+.++++++.++...+.+-..    ++.+|++   -.|.+.++++|..|++|++
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf---isg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF---ISGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH---HhchheEEEEecCcccchh
Confidence            34566889999999999999999999999999998877766543332    3344443   2456777799999999999


Q ss_pred             chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc-ccc
Q 018727          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP-ETL  240 (351)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~  240 (351)
                      .|+++.|..+.+..+|+++.|+++ ...                 ..+-..+..+...+.++..++..++| |++
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA-~~~-----------------e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA-MRA-----------------ELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH-HHh-----------------ccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            999999999999999999999998 332                 22233455566666666666666666 443

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1e-11  Score=115.97  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      .+.......++............|++.+ .+|.++.+      .++......++..++.++.|++.||+|||+++..+.+
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~  335 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL  335 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3444444444444444455556676665 47888777      8888888888888888999999999999999998888


Q ss_pred             HHHHHHHHhhhh---hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       121 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..+...+....   ++.+.+.+..++.|++.+...+ ...++.+..|+++|+.+.++.+....+|..+|+.+++.+.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        336 GLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766555442   3344444556677777766555 48888899999999999999999999999999999998876

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.38  E-value=2.1e-11  Score=111.37  Aligned_cols=267  Identities=19%  Similarity=0.282  Sum_probs=162.0

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      ...+..+..++......+..+.....++..... +.....+.......+...+.++..|.++||+|||..+.+..+.+.+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~-~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQL-ENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccc-hhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            344444555555555555555555554433322 1111122222233567788999999999999999999999988888


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhhc---ccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727          125 FNTLFGLSVNFWMAVLTRFLLGSLN---GLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (351)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~---g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (351)
                      ..++..+.. + ++++   +.++..   +.+....++++|....++|...+|+.+.....+..++|.+++++..      
T Consensus       105 ~~~~~~~~~-~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------  173 (463)
T KOG2816|consen  105 PALCLLFQG-Y-WFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------  173 (463)
T ss_pred             hHHHHHHHH-H-HHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence            877776655 3 3333   555432   2234458999999999999999999999999999999999999987      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCccccccc
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (351)
                                ..+...++.+..+..++.. ...+++||+...+..+....    ............ ..+........-.
T Consensus       174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~  238 (463)
T KOG2816|consen  174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL----RELTPGSLDSSH-VADAFQSLTKVGP  238 (463)
T ss_pred             ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc----cccCCCcccchh-hhhhhhhhcccCC
Confidence                      5566667777777766654 45677888765443321000    000000000000 0000011111223


Q ss_pred             ccchHHHHHHHHHHHhhHhHHHH-HHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          281 NWPLMSSIIVYCVFSLHDMAYSE-IFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      +|..+.++...+........-.. ....|+..+     ++++..+.+.+.+.......++++..
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~  297 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLL  297 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455545444444443332222 334455555     89999999998888888877766554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.37  E-value=1.7e-11  Score=112.89  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=97.4

Q ss_pred             hhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (351)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (351)
                      ....+|.+.++.|.+..+      .+.+.+...++..++.++.|+++||+|||+.+..+.++..+..+.....++.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            455677777778888777      88888888899999999999999999999999888777666554443322111122


Q ss_pred             HHHHHhhh--hcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       140 ~~r~l~G~--~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.-++.|+  ......+ .+.++.|.+|+++|++++|+......+|+.++|.+.+.+.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            22223333  2222233 47788999999999999999999999999999999999987

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=2.4e-11  Score=107.35  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      ++.++......++...+.+...+++ |.+.+..|++.+.      .+++..++.++..+|+.++|+++|| +.|+.+...
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~  282 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAA  282 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence            3445555555555555555555555 6677778999999      9999999999999999999999999 989888888


Q ss_pred             HHHHHHHHHHhhh-hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          119 TASVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       119 ~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      ..+..+..+...+ .++.+..++.-++.|+..+..... ...+++ .-++.+..+.+++..+.++|..+|..++|.+.+ 
T Consensus       283 ~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~-  360 (394)
T COG2814         283 LLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD-  360 (394)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            7776666655554 455556666666677765554443 566666 446779999999999999999999999999999 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhc
Q 018727          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (351)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (351)
                                     ++++....+..++..++.++..+.
T Consensus       361 ---------------~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         361 ---------------ALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             ---------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence                           666777777777777666555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.37  E-value=1.9e-11  Score=114.30  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=96.9

Q ss_pred             cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh--
Q 018727           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--  133 (351)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--  133 (351)
                      ..+....+.|.+.++.|.+...      ..+......+..+++.++.|+++||+|||++++.+.++.+++.++++...  
T Consensus       286 ~~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        286 GINVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             ChhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3344455668888888888776      66666677788899999999999999999999999888888776654321  


Q ss_pred             h-HH-HHHHHHHHhhhhccc-chh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          134 N-FW-MAVLTRFLLGSLNGL-LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       134 ~-~~-~l~~~r~l~G~~~g~-~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      + .+ ......++.+++.+. ..+ ...+++|.+|+++|++++|+.+....+|.++++.+.+.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1 11 222223333333322 334 4899999999999999999999999999998877665443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=3.8e-12  Score=114.35  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=111.7

Q ss_pred             hhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh-HHHHH
Q 018727           62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV  139 (351)
Q Consensus        62 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~  139 (351)
                      ...|.+.++ +|.+..+      .+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777665 7888888      899999999999999999999999999999999887777777777766664 77788


Q ss_pred             HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..++.|++.+...+. ..++.|.+|+++|+++.++.+....+|..++|.++|.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999988777665 8899999999999999999999999999999999999876

>TIGR00898 2A0119 cation transport protein

Probab=99.36  E-value=1.3e-11  Score=116.25  Aligned_cols=137  Identities=20%  Similarity=0.126  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHhhhhcccchh-HHHHHhhhccc
Q 018727           89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFRE  165 (351)
Q Consensus        89 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~  165 (351)
                      ....+...++.++.+++.||+|||+++.++.++.+++.++..+.++.  +...+..++.+++.+...+ ...+.+|.+|+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            34456677888999999999999999999988888887766665433  3444444555555444444 58899999999


Q ss_pred             cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccC
Q 018727          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH  243 (351)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  243 (351)
                      +.|++++|+.+....+|++++|.+.+ +.                 ..++..++.+.++..++..+..+++||++.++
T Consensus       442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~  501 (505)
T TIGR00898       442 VVRNLGVGVCSTMARVGSIISPFLVY-LG-----------------EKWLFLPLVLFGGLALLAGILTLFLPETKGVP  501 (505)
T ss_pred             HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------------HHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCC
Confidence            99999999999999999999999988 43                 23344556666666666666677889876543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.36  E-value=2.4e-11  Score=112.14  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=97.4

Q ss_pred             hhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHH-Hh-
Q 018727           53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LF-  129 (351)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~-  129 (351)
                      .....+....+.|.+.++ +|.+..+      .++......++..++.+++|+++||+|||+++.++..+..+... .. 
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344455566777877655 7988887      88888888888899999999999999999988776544332221 11 


Q ss_pred             --hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHH-HHHhHHHHHHHhhhhhcC
Q 018727          130 --GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       130 --~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~  195 (351)
                        ...++...+.+..++.+++.+...+. ..++.|.+|+++|++++++.+. +..+++.++|.+.+.+.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence              11233434444445556665555553 6788999999999999998644 444567889999999988

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.35  E-value=3e-11  Score=109.87  Aligned_cols=170  Identities=18%  Similarity=0.204  Sum_probs=122.3

Q ss_pred             hhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 018727           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (351)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~  132 (351)
                      ..-+.+.+..+...+.++-|++..+      +.+......+...+..+++.++.||+|||+.++++..++.+..+++...
T Consensus       282 q~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  282 QFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3334556666667888888999988      8888888999999999999999999999999999999988888776543


Q ss_pred             h----hH--HH---HHHHHHHhhh--hcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727          133 V----NF--WM---AVLTRFLLGS--LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (351)
Q Consensus       133 ~----~~--~~---l~~~r~l~G~--~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (351)
                      .    ..  |.   .+++.++..+  +.|.....+-+.+|.+|++.|..+++.......+..++-...-..+.+      
T Consensus       356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~------  429 (485)
T KOG0569|consen  356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN------  429 (485)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            1    11  11   1233333333  344333348899999999999999999998888888888777777766      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (351)
                                .+|-...+.+.+...+..+..+..+|||+.+..
T Consensus       430 ----------~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  430 ----------VIGPYVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             ----------HhcchhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence                      222222233333344455677888999986554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=1.7e-11  Score=111.90  Aligned_cols=131  Identities=18%  Similarity=0.260  Sum_probs=102.7

Q ss_pred             chhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH-HHhhhhhhHH
Q 018727           59 SLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFW  136 (351)
Q Consensus        59 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~  136 (351)
                      ......|. +.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+.++.++..+.. ......++.+
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVA  329 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchH
Confidence            33444554 44568888888      8999999999999999999999999999999888876653333 2333345556


Q ss_pred             HHHHHHHHhhhhccc-chhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          137 MAVLTRFLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       137 ~l~~~r~l~G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+.+..++.|+..+. ....+.++.|.+|+++|++++|+.+....+|..++|.+.|.+.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665444 34458889999999999999999999999999999999999998

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=6.3e-11  Score=110.54  Aligned_cols=136  Identities=18%  Similarity=0.276  Sum_probs=118.7

Q ss_pred             hccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 018727           54 ALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (351)
Q Consensus        54 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~  132 (351)
                      .+....+...+|.+.+ ++|.+...      .|++.++..+|..++.++.+.+.+|+++++.+..+.++.+++.+..++.
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            3333444556776654 57888888      9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++.+...+..++.|++.....+ ..+.+-+..|++.||++++++++....+..+|.++.|.+.+
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888999988766555 48889999999999999999999999999999999999998

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11462 putative transporter; Provisional

Probab=99.34  E-value=6.1e-11  Score=110.02  Aligned_cols=248  Identities=14%  Similarity=0.053  Sum_probs=145.4

Q ss_pred             HHHHHhhccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChHH-HHHHHHH
Q 018727           48 IIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPV-IIMGTAS  121 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~  121 (351)
                      +.-+...........++ .++.+..|+++..      +|.+..+.-+.-++.-|+.|.++||    +||||. ++++.+.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~   89 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP   89 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence            33333344444444444 4556678999998      9999999999999999999999996    788755 5566666


Q ss_pred             HHHHHHHhhhhhh------HHHHHHHHHHhhhhcccch-hHHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          122 VVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       122 ~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~-~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      .+++..++...++      ...+.+...+..++..... |..++.+|+.+ +++|.+..+....+..+|..+++.+...+
T Consensus        90 ~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl  169 (460)
T PRK11462         90 FGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL  169 (460)
T ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655543332      2334444455555554444 35788888887 78999999999999999988888776665


Q ss_pred             cCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhccc
Q 018727          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (351)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      .+..++...         ..+|.....+.+++.++.. +++...+|.++.+.  ++  .                  ...
T Consensus       170 v~~~g~~~~---------~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~--~~--~------------------~~~  218 (460)
T PRK11462        170 VNLIGGDNK---------PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP--TT--T------------------SMR  218 (460)
T ss_pred             HHHhCCCch---------hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc--cC--C------------------CHH
Confidence            542111000         1244544444444444433 33333444321110  00  0                  011


Q ss_pred             CcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHh
Q 018727          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDT  338 (351)
Q Consensus       273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~  338 (351)
                      ...+..++||.++.++...++..............|....     .+. +...+.++....+..++
T Consensus       219 ~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g~-~~~~~~~l~~~~i~~ii  278 (460)
T PRK11462        219 EDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LGT-PEVFVAFLTTYCVGNLI  278 (460)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cCC-hHHHHHHHHHHHHHHHH
Confidence            1345667888887776666666555555555555444443     232 23334444454444444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.33  E-value=2.2e-11  Score=113.53  Aligned_cols=155  Identities=10%  Similarity=0.057  Sum_probs=98.9

Q ss_pred             hhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh-------HHHHHHHHHHHHHHHHhhh
Q 018727           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGL  131 (351)
Q Consensus        60 ~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~  131 (351)
                      ...++|.+ .+++|++..+      .+.+.++..++..++.+++|+++||+|||       ..+.+..++.++..++...
T Consensus       271 ~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~  344 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR  344 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            44455544 5667998888      89999999999999999999999999865       2333333333343444455


Q ss_pred             hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 018727          132 SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (351)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~  210 (351)
                      .++.+..++..++.+++.+.... ..+++.+..| ++|+++.|+.+.+..+|+.++|.+.+ ..+               
T Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~---------------  407 (476)
T PLN00028        345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGS---------------  407 (476)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcC---------------
Confidence            55555555555555554333222 3555566554 68999999988877788877776643 111               


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHhcccc
Q 018727          211 GKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (351)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (351)
                       ..+|...+.+.+++.++..++.++++.
T Consensus       408 -~~~y~~~f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        408 -SYSTETGISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             -CccHhhHHHHHHHHHHHHHHHHHheec
Confidence             223455556666666666666555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=7.4e-11  Score=108.83  Aligned_cols=135  Identities=13%  Similarity=0.073  Sum_probs=87.6

Q ss_pred             hccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh--
Q 018727           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--  130 (351)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--  130 (351)
                      ....+....++|.+. +++|.+..+      .+...++..++..++.++.|+++||+|||+++.++.++.++......  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~  329 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            344555667777655 457888777      78888887788888999999999999999988776554433322111  


Q ss_pred             h--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhhhhc
Q 018727          131 L--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLA  194 (351)
Q Consensus       131 ~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~  194 (351)
                      .  .++....+..-.+.+++.+...+ ...+.+|++|++.|++++|+.+...++ .+...|.+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence            1  12222222222222223333333 477899999999999999998765553 3445788777553

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.31  E-value=4.8e-11  Score=107.63  Aligned_cols=276  Identities=17%  Similarity=0.148  Sum_probs=175.2

Q ss_pred             CCchHHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcC
Q 018727           37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGR  111 (351)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Gr  111 (351)
                      +.+.+....-.+..+...+.......++. ++.+.+|++...      +|.+..+.-+--++.-|+.|.++||    +||
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            34445555445555555555566666665 445568999988      8988888888889999999999995    787


Q ss_pred             hH-HHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHhhhhcccch-hHHHHHhhhcc-ccchhhhHhHHHHHHHhH
Q 018727          112 KP-VIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIG  182 (351)
Q Consensus       112 r~-~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~-~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g  182 (351)
                      +| -++.+.+..++...++..++      +....++...+.+++..... |-.++.+|+.+ ++||.+..+.-+.+..+|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence            65 56666677777777666655      23445556677777755544 45778888775 688999999999999999


Q ss_pred             HHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCCCCccchhhHHHhhhhh
Q 018727          183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESAS  261 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (351)
                      ..+...+...+....++.+.         ..+|+....+.++..++.. ++++-.+|+..+....++..           
T Consensus       162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~-----------  221 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV-----------  221 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence            88877777776653322211         2345555555555555443 34445566544222111100           


Q ss_pred             hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhh--
Q 018727          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTH--  339 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~--  339 (351)
                            +.+.......+++|++++..++...+.........+...+|.+..     +|.+.......+.......+++  
T Consensus       222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~~  290 (467)
T COG2211         222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGLI  290 (467)
T ss_pred             ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHHH
Confidence                  111112334678999999988877777777777777777666655     6666666655555544444332  


Q ss_pred             ---hccccccccc
Q 018727          340 ---ILPFKIDYRF  349 (351)
Q Consensus       340 ---~~~~~~~~r~  349 (351)
                         .+..++|.|+
T Consensus       291 ~~p~L~~~~gkk~  303 (467)
T COG2211         291 LWPRLVKKFGKKK  303 (467)
T ss_pred             hHHHHHHHhchHH
Confidence               2333666654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=3.1e-11  Score=110.09  Aligned_cols=131  Identities=16%  Similarity=0.097  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~  162 (351)
                      .+.+.++..+...++.++.|++.||+|||+.+.++.++.++...+....++.+.+++..++.|++...... ...+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888888888889999999999999999999999888888777777788888888889999887655443 36677788


Q ss_pred             ccccchhhhHhH-HHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH
Q 018727          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (351)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (351)
                      .+++.+++..+. .+....+|+.++|.++|++.+                ..+|+.++.+.++..++..
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i~~  388 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLLFT  388 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHHHH
Confidence            888888887766 678899999999999999998                4556666666665555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.30  E-value=1.6e-10  Score=108.21  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=111.1

Q ss_pred             HHHHHhhcccccccchhhhhHHHHH-HHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hhh-hhHHHHH
Q 018727           65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (351)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (351)
                      |++.+++|++..+      .+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+.+   +.. ++.+.+.
T Consensus       247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4445678999988      888874 5567899999999999999999988776665544443322   222 3444444


Q ss_pred             HHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhH
Q 018727          140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (351)
                      ..-++..++.|...+ ..++..+..+++.+++.+++.+....+|..+++.++|.+.+                ..+|...
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~  384 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTF  384 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHH
Confidence            455555554444444 47888899999999999999999999999999999999998                4456666


Q ss_pred             HHHHHHHHHHHHHHHhccccc
Q 018727          219 CLCISLFAFGVTIAAFWLPET  239 (351)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e~  239 (351)
                      +.+..+++++.++....++++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            677777777766665555554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.30  E-value=8.9e-12  Score=115.14  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhhhcccchhH-HHHHhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~  161 (351)
                      .+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+. .++++|
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD  338 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6677777888999999999999999999999999988888777666554 45566667777888887776664 888888


Q ss_pred             hcc-------ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          162 IFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       162 ~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ..+       ++.+|...++.+.+..+|..+++.+.+.+.+
T Consensus       339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765       5668999999999999999999999999987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.30  E-value=3.5e-11  Score=109.49  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=107.7

Q ss_pred             HHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh
Q 018727           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (351)
                      ++............+.+.+|.|+++++      ++++.....+ ...++.++.|++.||+|+|+.+..+..+.++..+..
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~  291 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW  291 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333333344445566667778999988      8988877654 556778999999999999999887766553332222


Q ss_pred             hh------hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccc-cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCC
Q 018727          130 GL------SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (351)
Q Consensus       130 ~~------~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (351)
                      ..      .++...++....+.+++.+...+ ....+.+..++ +++++.+++.+...++|..++|.++|.+.+      
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~------  365 (390)
T TIGR02718       292 FAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD------  365 (390)
T ss_pred             HHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            11      12333334444455555555544 46666666665 889999999999999999999999999998      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHH
Q 018727          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (351)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (351)
                                ..+|...+...+++.++.+
T Consensus       366 ----------~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       366 ----------RFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             ----------HHccHHHHHHHHHHHHHHH
Confidence                      4455555566655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=7.4e-11  Score=109.05  Aligned_cols=176  Identities=12%  Similarity=0.041  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      ++......++.....+....+.|.+.++ .|.+..+      .++....+.++..++.++.|+++||+++++....+..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  326 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF  326 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence            3333333344444444556677766655 6888887      88888889899999999999999999654322222222


Q ss_pred             H---HHHHHHhhh--hhhHHHHHHHHHHhhhhcccc-hhHHHHHhhhccccchhhhHhHHHHHHHhH-HHHHHHhhhhhc
Q 018727          122 V---VIFNTLFGL--SVNFWMAVLTRFLLGSLNGLL-GPIKAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLA  194 (351)
Q Consensus       122 ~---~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~  194 (351)
                      .   .++.+....  ..+.+......++.|++.... ........|.+|+++|++++|+.+....+| .+++|.+.|.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~  406 (438)
T TIGR00712       327 MTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  406 (438)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence            1   112221111  123333333334445432221 222456779999999999999998887776 578999999999


Q ss_pred             CCCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhcccccc
Q 018727          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETL  240 (351)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~  240 (351)
                      +                ..+|...+.+..+..++ .+...+.+||.+
T Consensus       407 ~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       407 D----------------FFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             H----------------hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8                33344444444443333 334455566654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.28  E-value=9.1e-11  Score=107.37  Aligned_cols=127  Identities=13%  Similarity=0.010  Sum_probs=97.7

Q ss_pred             hhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-----hhH
Q 018727           62 PFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNF  135 (351)
Q Consensus        62 ~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~  135 (351)
                      ...|.+ .+++|.++.+      .++......++..++.++.|+++||+|+|+.+.++.++..++..+....     ++.
T Consensus       236 ~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  309 (406)
T PRK15402        236 ALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAY  309 (406)
T ss_pred             HHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence            344544 4567888777      8887777778888999999999999999999988887777666655442     345


Q ss_pred             HHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.+++..++.|++.+...+. ..... ..++++||++.+.++....+|..+|+.+++.+.+
T Consensus       310 ~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66677778888887765543 44443 3345889999999999999999999999999987

>TIGR00896 CynX cyanate transporter

Probab=99.28  E-value=1.1e-10  Score=104.94  Aligned_cols=150  Identities=11%  Similarity=0.030  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTA  120 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~  120 (351)
                      .++.......+..........++|.+.++.|.+..+      .+.+.+...++..+++++.|++.||+ +||+.+.++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~  271 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAV  271 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence            333333333444444455667788888888988888      99999999999999999999999999 56667777777


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc-cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      +.+++.+...+..+..... ..++.|++.+...+. ...+.+.. ++++++...++.+....+|..++|.+.|.+.+..+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       272 LQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777766565544332222 346778887776664 56655544 45677899999888889999999999999998433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=4.7e-11  Score=110.86  Aligned_cols=176  Identities=15%  Similarity=0.225  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--ChHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMG  118 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~  118 (351)
                      +.++.+.+...+..++.......+|.+.++.+.+..+      .+.+.++..+...++.+..|+++|+..  ++.+..++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~  371 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT  371 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence            3444556666667777778888889999999999999      999999999999999999999999988  45567777


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      +++.+++.+.++++++++.+....++.|++.|.+... ..++.|..+.++-..+.|+...+.+++.++||+++|.+.+.+
T Consensus       372 ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  372 LLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence            8888888888999999999999999999999888886 678999999999999999999999999999999999998844


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (351)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      ++               |...++.+++..++...+++..+
T Consensus       452 g~---------------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  452 GN---------------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             CC---------------eeeehhhcChHHHHHHHHHHHhH
Confidence            33               34455666666666666666666

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=3.5e-11  Score=108.60  Aligned_cols=147  Identities=16%  Similarity=0.168  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHH-HHHH-
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPV-IIMG-  118 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~-~~~~-  118 (351)
                      ++.+.+..++..........+.|.+. +++|.+..+      .++..+...++..++.++.|+++||.++ |+. +... 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  291 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF  291 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence            33444444444445555566666554 557888888      8999999999999999999999998643 332 2221 


Q ss_pred             HHHHHHHHHHhhh--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       119 ~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .....++......  ..+.....+..++.|+......+ ...+..|.+|+++|+++.++.+....+|..++|.+.|.+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            1222222222222  23444555556666764333333 47788999999999999999999999999999999999998

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.26  E-value=2.9e-10  Score=103.59  Aligned_cols=125  Identities=11%  Similarity=0.004  Sum_probs=96.8

Q ss_pred             HHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018727           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (351)
Q Consensus        64 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  143 (351)
                      .|.+.+++|++..+      .+++.....++..++.++.+++.||.+++..+....+......++....++.+.+.+..+
T Consensus       240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (394)
T PRK10213        240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI  313 (394)
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            36777788999888      899999999999999999999999965444344333334444444445667777778888


Q ss_pred             HhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       144 l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.|++.+...+. .+++.+..| +++++..+.......+|..+||.++|.+.+
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899888777775 778888887 556777788888889999999999999998

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=102.10  Aligned_cols=163  Identities=14%  Similarity=0.175  Sum_probs=126.8

Q ss_pred             cccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh
Q 018727           56 PISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (351)
Q Consensus        56 ~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +.+.+...-..+. .++|++..+      ..++.....+..+++++++|+|.||+|.|+++.++.++..+.++..-+...
T Consensus       267 Gv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~  340 (438)
T COG2270         267 GVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG  340 (438)
T ss_pred             hHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence            3333333434444 489999998      888888999999999999999999999999999998888887776666655


Q ss_pred             HHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727          135 FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (351)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (351)
                      ...+++.-.+.|+..|.... +-++.++..|+++-++.+|+++.....++.+||.+-+.+.+.+++.             
T Consensus       341 ~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~-------------  407 (438)
T COG2270         341 ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS-------------  407 (438)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch-------------
Confidence            56666777888988777666 5999999999999999999999999999999999999998854432             


Q ss_pred             cchhHHHHHHHHHHHHHHHHhccccc
Q 018727          214 PYFLPCLCISLFAFGVTIAAFWLPET  239 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (351)
                        |.-+....++..+.++...++|++
T Consensus       408 --r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         408 --RAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             --hhHHHHHHHHHHhhHhhEEeecCC
Confidence              222344444444555566666665

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.24  E-value=4.5e-10  Score=98.73  Aligned_cols=233  Identities=15%  Similarity=0.100  Sum_probs=145.2

Q ss_pred             HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-----ChHHHH-HHHHHHHHHHHHhhh-----hh--
Q 018727           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVII-MGTASVVIFNTLFGL-----SV--  133 (351)
Q Consensus        67 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~-----~~--  133 (351)
                      +..|++++..-      .+.+.+...+. ....+.+|..||+.+     ||..++ .+.++...+..+.++     ..  
T Consensus         6 MIvEL~vpA~l------v~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~   78 (403)
T PF03209_consen    6 MIVELGVPAWL------VALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG   78 (403)
T ss_pred             HHHHhccHHHH------HHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            45567777666      77777777654 567899999999998     775554 445555554444333     12  


Q ss_pred             -----hH--H--HHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCc
Q 018727          134 -----NF--W--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (351)
Q Consensus       134 -----~~--~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (351)
                           +.  +  ...+...+.|+|.+...+. .++++|..|+|+|+++.++...+..+|.+++..+.+.+.+..      
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~------  152 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF------  152 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc------
Confidence                 11  2  2334456678887776665 999999999999999999999999999999999999998721      


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccc
Q 018727          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (351)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (351)
                       +-      ......+....+..++..++..+-.|++.....+.++++                +......++++..+|+
T Consensus       153 -s~------~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~~~  209 (403)
T PF03209_consen  153 -SP------ERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWASPQ  209 (403)
T ss_pred             -CH------HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhCCC
Confidence             10      001111122222222222333333444333222111000                1122335667778888


Q ss_pred             hHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                      ..++.+..++.....+.-...+-.|-.+.     +|++..+..-+....+.+..++-
T Consensus       210 a~~f~~fl~l~t~a~~~QD~iLEPygg~V-----fgmsv~eTT~Lta~~~~G~L~G~  261 (403)
T PF03209_consen  210 ARRFFVFLFLGTLAFFMQDVILEPYGGEV-----FGMSVGETTRLTAFWGGGTLLGM  261 (403)
T ss_pred             hhHHHHHHHHHHHHHHhhHHHcCCchhHH-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence            88877776666655555554444455444     89999999888888777776644

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=1.5e-10  Score=106.13  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhh--cccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHH-HHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGT  119 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~  119 (351)
                      ++......++.....+....++|.+.+++  +.+..+      .+...+...++..++.++.|+++||++||+. +....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            33444455555556666778888888875  456666      7888899999999999999999999997774 33333


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++..++..+.....+....+.+-.+.+++.....+. .....|.+|+++|++++|+.+....+|++++|.+.+.+.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            333333322222222222222222222332222222 4555788999999999999999999999999999999988

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.22  E-value=1e-09  Score=91.83  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=106.5

Q ss_pred             hccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-
Q 018727           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-  132 (351)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-  132 (351)
                      ....+....+-|.+.+++|++.+|      ...+.++..+|..+ .++.|.+.|++|++.++.++.+...++..+...+ 
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777778999999999999      99999999999876 5889999999999999999999999988766542 


Q ss_pred             ------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          133 ------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       133 ------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                            .++|.+.+..++.|.+.+.+.++ .....+.|| ++||++.|+.-...++++.+-..+...+.+
T Consensus        88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                  35667766666766766655553 566668898 579999999988889888887777666654

>PRK10054 putative transporter; Provisional

Probab=99.22  E-value=1.2e-10  Score=105.98  Aligned_cols=111  Identities=16%  Similarity=0.033  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhhhcccchhH-HHHHhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~  161 (351)
                      .+.+.+...+.....+++.|.+.||+++|+.+..+..+..++....... ++.+.+.+..++.|++.+...+. ...+.+
T Consensus       246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  325 (395)
T PRK10054        246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH  325 (395)
T ss_pred             HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6777777777777778899999999999999998888888777666654 56666777788888887776665 788999


Q ss_pred             hccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ..|++.|+++.+..+ ...+|..+||.++|.+.+
T Consensus       326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999988765 566899999999999998

>TIGR01272 gluP glucose/galactose transporter

Probab=99.21  E-value=5e-10  Score=98.33  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh---hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      +.++...+..++..........+.+.+.++   +|+++.+      .++..+.+..+..++.++.+++.||+|+|+++.+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            444444455555555666677777776653   5888888      9999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..+..++.++....++...+ ..-++.|++.+...|. .+...+..|++ .+++.++. .+..+|+++.|.+.|.+.+
T Consensus       214 ~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       214 NAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            887777776655554443332 3455778887777765 77777777754 45566665 5677999999999999988

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.21  E-value=2.9e-10  Score=105.98  Aligned_cols=177  Identities=17%  Similarity=0.189  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHH-----
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-----  114 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-----  114 (351)
                      +.++.+++..+......+....++|.+. +.+|.+..+      .+++.++..++..++.++.|+++||+++|+.     
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~  334 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA  334 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            3455556666666666666677788665 557888888      8999999999999999999999999875421     


Q ss_pred             ---HHHHHHHH--HHHHHHhhh-hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727          115 ---IIMGTASV--VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (351)
Q Consensus       115 ---~~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  187 (351)
                         +..+....  .+..+.... ..+....++.-.+.+.+.+...+. .....|..|. .+|.+.++.+....+|+.++|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p  413 (465)
T TIGR00894       335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIAS  413 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHH
Confidence               11111111  111111111 223333333444444444433333 4455566665 899999999999999999999


Q ss_pred             HhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (351)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      .+.+.+.+..       +      ...|...+.+.++..++..+.....+
T Consensus       414 ~l~g~~~~~~-------~------~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       414 TLAGNILSQD-------S------KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HhhheeeCCC-------C------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999887621       0      12356666776666666555544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.20  E-value=3.5e-10  Score=102.44  Aligned_cols=148  Identities=17%  Similarity=0.269  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhc-ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      ++....+..++.......+..+.+.+.++.| .+...      .+.+.++..++-.+.-.+.+++..|+|.|+++.++.+
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3444445556666666777777787888887 56666      7777777778888899999999999999999999999


Q ss_pred             HHHHHHHHhhhh-hhHHHHHHH----HHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHH-HHHhHHHHHHHhhhhh
Q 018727          121 SVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFL  193 (351)
Q Consensus       121 ~~~~~~~~~~~~-~~~~~l~~~----r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l  193 (351)
                      ..++=..+++.. ++.+...+.    ..+.|+..+.+... ..++.+.+|++.|+++.++++. ..++|..+|..++|++
T Consensus       282 ~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l  361 (400)
T PF03825_consen  282 AYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL  361 (400)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            988888888776 444443333    34689888877765 8999999999999999999865 5689999999999999


Q ss_pred             cC
Q 018727          194 AQ  195 (351)
Q Consensus       194 ~~  195 (351)
                      .+
T Consensus       362 ~~  363 (400)
T PF03825_consen  362 YD  363 (400)
T ss_pred             HH
Confidence            98

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.20  E-value=6.4e-09  Score=96.16  Aligned_cols=235  Identities=17%  Similarity=0.110  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH-HHHHHHHHHHhhhh-hh-HHHHHHHHHHhhhhcccchhH-HHHH
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGPI-KAYA  159 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~g~~~~~-~~~~  159 (351)
                      .++..++..+..++..|+.|.++|+-|+||.++.. ..+..++..++.+. ++ ++...+..++.-++.+...+. .+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56778888888899999999999999987765544 44444455554442 33 333333334444455555554 8999


Q ss_pred             hhhccccch--------------------------hhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCc
Q 018727          160 CEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (351)
Q Consensus       160 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (351)
                      .|+.+++++                          ++..+.-...+.+|+++.-.+.-.+....+..       . =+..
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-------~-~~~~  223 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-------A-SNTW  223 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------c-ccch
Confidence            999999888                          88888888888888888877765554322111       0 0023


Q ss_pred             cchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHH
Q 018727          214 PYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (351)
Q Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  292 (351)
                      +.|..+.+.++..++. +...+++||.++.+..+..... ....           -.+.....+++.|.|.+...++.++
T Consensus       224 ~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~-~~~g-----------~~~l~~t~k~~~~~~~~~~fLia~~  291 (477)
T PF11700_consen  224 AIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY-LRFG-----------FKRLWRTFKEIRKLRQLFLFLIAYF  291 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH-HHHH-----------HHHHHHHHHHHHhChHHHHHHHHHH
Confidence            3466566665555443 4456667776653211111100 0000           0111224456667888999999999


Q ss_pred             HHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ++.-.......+...|..+.     +|++..+...+.....+..+++.+..
T Consensus       292 l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~~~  337 (477)
T PF11700_consen  292 LYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGALLF  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877     89999998888887777777766554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.18  E-value=4.7e-10  Score=101.81  Aligned_cols=123  Identities=13%  Similarity=0.119  Sum_probs=89.3

Q ss_pred             HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Q 018727           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF  143 (351)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~  143 (351)
                      |.+.+.+|.++.+      .+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus       224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555567888888      999999999999999999999999999999998888777777655433 445555555555


Q ss_pred             Hhhhhccc-chhHH-HHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          144 LLGSLNGL-LGPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       144 l~G~~~g~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.+++... ..+.. ....+..+++.++.+  ..+....+|..+||.++|.+.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence            66665333 33333 344444455555544  3466788999999999999987

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.17  E-value=2.5e-10  Score=100.09  Aligned_cols=151  Identities=18%  Similarity=0.199  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .++.|.+++.++......-.....+| ++.++|+.++.+      .+.+...+.+...+..+.+|+++||+|.+|++.+.
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence            45566677777776666666777777 456679999998      99999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhhh-------hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          119 TASVVIFNTLFGLS-------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       119 ~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      ...++++..+.+..       .+....++..+..++..|.-.. +..++..++|+ +-|.+.|+...++++|+..-|...
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~  369 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAF  369 (417)
T ss_pred             HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHH
Confidence            88888777666654       3344444433334443333222 35666666665 678899999999999999999999


Q ss_pred             hhhcCCC
Q 018727          191 GFLAQPA  197 (351)
Q Consensus       191 ~~l~~~~  197 (351)
                      +...+.+
T Consensus       370 g~~~~~t  376 (417)
T COG2223         370 GVSLDLT  376 (417)
T ss_pred             HHHHHhc
Confidence            9998844

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.16  E-value=3.8e-10  Score=102.99  Aligned_cols=130  Identities=12%  Similarity=0.053  Sum_probs=100.6

Q ss_pred             hhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (351)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (351)
                      ...+|.+.++.+.++.+      .+++.+...++...+..+.+++.| |++.++.+..+..+.+++.++.+..++++.+.
T Consensus       228 ~~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  301 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF  301 (400)
T ss_pred             HHhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34567766665556666      787777776666655555566665 56767777777777777777777778877777


Q ss_pred             HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      +..++.+++.+...+. .+++.|..|+++||+++++.+....+|..+||.++|.+.+.
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            7777778877666664 88999999999999999999999999999999999999874

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.15  E-value=1.7e-09  Score=97.43  Aligned_cols=144  Identities=12%  Similarity=0.049  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh---HHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK---PVIIM  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~~~~~  117 (351)
                      +.++.+++..++.....+....++|.+.++.|.+. .      .+...++..+...++   .++++||.+||   +....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~  261 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIR  261 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHH
Confidence            44566666677777777777888998888877654 3      444455554444444   47788887653   33232


Q ss_pred             -HHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                       ..++.++.....+...+....++.-.+.+++.....+ ..++.+|.+|++.|+++.|+.+....+|++++|.+.+.+.
T Consensus       262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       262 AAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence             3333344444444444444444444555555444444 5789999999999999999999999999999999988776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.14  E-value=3.8e-10  Score=105.74  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=112.9

Q ss_pred             HHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      .+..++..+........+|.+.+ .+|.+..+      .++......++..++.++.|++.||+|||+++.++..+.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVG  334 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            34444444444445556676654 47888888      899999999999999999999999999999999988888877


Q ss_pred             HHHhhh----hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          126 NTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       126 ~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ..+...    ..+.+.+....++.|++.+...+ ......+..|+++|+++.++.+....+|+.+|+.+.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       335 FYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766652    23456666777888998777654 46667788899999999999999999999999999988875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.14  E-value=5.5e-10  Score=100.33  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      ++...+..++.....+......|.+.+++|.+..+      .+.+..+.. ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33334444444555556667777777778888888      887777655 57789999999999999999998888877


Q ss_pred             HHHHHHHhhhh-----------hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHH
Q 018727          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (351)
Q Consensus       122 ~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~  180 (351)
                      .+++..+..+.           ++.+.+..+.++.+++.+...+. .+++.|.+|+++||+.+++.+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            77766544432           34566777788889988877775 9999999999999999999877654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.14  E-value=2.7e-09  Score=88.68  Aligned_cols=151  Identities=21%  Similarity=0.285  Sum_probs=109.1

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      |.+.+..++..+-...+......+.  .+.++||+|...      .+.+.+....-.++.+++.|.++||+|++...+.+
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            3344444454444444444433332  478889999988      88888877777789999999999999999877766


Q ss_pred             HHHHHH-HHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          119 TASVVI-FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       119 ~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      ..+..+ +-....++  .+.=+....+.|+........ +..++...|+++-|++.|..+...++|-.+.|+++|.+.+.
T Consensus       337 a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            544443 33333332  222244556677776666664 88889999999999999999999999999999999999986


Q ss_pred             CCC
Q 018727          197 AEK  199 (351)
Q Consensus       197 ~~~  199 (351)
                      .++
T Consensus       415 ~g~  417 (459)
T KOG4686|consen  415 DGS  417 (459)
T ss_pred             CCc
Confidence            553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.11  E-value=9.4e-10  Score=100.52  Aligned_cols=150  Identities=19%  Similarity=0.143  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +..+.+++.+++....+......+|++.++ ..+...      ......+..+...+..+++|+++||+|+|+++.++.+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i  324 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFI  324 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHH
Confidence            345556666666555555566677766655 233222      2222334456778899999999999999999998887


Q ss_pred             HHHHHHHHhh--hh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccc---------------------cchhhhH
Q 018727          121 SVVIFNTLFG--LS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGL  172 (351)
Q Consensus       121 ~~~~~~~~~~--~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~---------------------~~r~~~~  172 (351)
                      ...++.....  ..    .+++.+.+..+...++.|.-.. ...++.+.+|+                     ++-|.+.
T Consensus       325 ~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  404 (462)
T PRK15034        325 FMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL  404 (462)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence            6666653221  11    2455555554444444444333 36666666664                     2567888


Q ss_pred             hHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          173 STVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       173 ~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      |+......+|+.+-|.+.+...+.+
T Consensus       405 G~v~a~G~~Ggf~~p~~~g~~~~~~  429 (462)
T PRK15034        405 GFISAIGAVGGFFIPQAFGMSLNMT  429 (462)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHHc
Confidence            8999999999999998888887643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.11  E-value=2.4e-09  Score=97.89  Aligned_cols=148  Identities=14%  Similarity=0.166  Sum_probs=97.0

Q ss_pred             HHHHHhhcccccccchhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hhh-hhHHHHH
Q 018727           65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (351)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (351)
                      +.+.+++|.+..+      .+++..... ++..++.+++|++.||+|+|+.+.++..+..+..+..   +.. ++.+.++
T Consensus       234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4566778998888      888876544 4678999999999999999998877766655544322   333 3555555


Q ss_pred             HHHHH----hhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCcc
Q 018727          140 LTRFL----LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (351)
Q Consensus       140 ~~r~l----~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (351)
                      +.-++    .|++.+...+. ..++.+.+|.++    .++.+...++|..+++.++|.+.+                .++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~----------------~~G  367 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVE----------------AYG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            54443    33444444443 667777777554    455555567777767778999988                555


Q ss_pred             chhHHHHHHHHHHHHHHHHhcccc
Q 018727          215 YFLPCLCISLFAFGVTIAAFWLPE  238 (351)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e  238 (351)
                      |+..+...++++++.++.....+.
T Consensus       368 ~~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        368 WPGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            666667776666665555544443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.10  E-value=2.9e-09  Score=98.12  Aligned_cols=149  Identities=18%  Similarity=0.211  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.+..+....++..+.........+++.++.--++..      .+.+..+..++..++.+++++++||+|+|+++..+.+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            4455566666666777777777777776664223345      6777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhh--hHHHHHHHHHHhhhhcccchhH-HHHHhhhccc-------cchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       121 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      +.+++.++..+.+  +.+.+++..++.|++.+...+. .++++|..+.       ++.|..++..+....+|..+++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            9999988887775  8899999999999998887765 8889888863       4468888999999999999999999


Q ss_pred             hhhcC
Q 018727          191 GFLAQ  195 (351)
Q Consensus       191 ~~l~~  195 (351)
                      +.+.+
T Consensus       379 g~~l~  383 (428)
T PF13347_consen  379 GLLLA  383 (428)
T ss_pred             HHHHH
Confidence            98876

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.10  E-value=4.2e-10  Score=100.57  Aligned_cols=135  Identities=21%  Similarity=0.256  Sum_probs=107.0

Q ss_pred             HHHHHHhhccccchhhhHHHH-HHhhccc-ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      ....+...+.........|.+ .+++|.+ ..+      .+.+.+...+...++.++.|+++||+|+|+..........+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  212 LIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL  285 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            333334444555567777776 7888988 567      88889999999999999999999999998887777766666


Q ss_pred             HHHHhhhh---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHH
Q 018727          125 FNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (351)
Q Consensus       125 ~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  187 (351)
                      ..+.....   ++....++..++.|++.+...+. ..++.|.+|+++|+++.++.+...++|..+||
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  286 GALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            66555443   34566667778889987776665 99999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.09  E-value=1.8e-09  Score=97.94  Aligned_cols=123  Identities=19%  Similarity=0.251  Sum_probs=89.8

Q ss_pred             hhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh-----hh
Q 018727           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN  134 (351)
Q Consensus        61 ~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~  134 (351)
                      ....|.+ .+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..++..+....     ++
T Consensus       226 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS  299 (385)
T ss_pred             HHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3344544 4578888888      8999999999999999999999999999999888877777666555432     23


Q ss_pred             HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHH-hHHHHHHHhh
Q 018727          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG  190 (351)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~  190 (351)
                      ...++...++.|++.+...+. .....|..| ++|+++.++.+.... +|.+.+|.++
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566778877666554 777788876 578999998876665 4555555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.08  E-value=1.4e-09  Score=102.13  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=111.0

Q ss_pred             HHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH
Q 018727           48 IIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~  126 (351)
                      +..+...........+.|.+ ++.+|.++.+      .++......++..++.++.|++.||+|+|+.+..+.++..++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        266 VMAMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSF  339 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            33333333444444555644 4457899888      9999999999999999999999999999999988888777776


Q ss_pred             HHhhh---hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          127 TLFGL---SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       127 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+...   .++.+......++.|++.|...+ ....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       340 ~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        340 YGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55433   24555666677888998877665 47778888999999999999999999999999999987765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.08  E-value=2e-09  Score=111.38  Aligned_cols=130  Identities=14%  Similarity=0.132  Sum_probs=109.6

Q ss_pred             chhhhHH-HHHHhhccccc-ccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHH
Q 018727           59 SLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (351)
Q Consensus        59 ~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~  136 (351)
                      .....+| ++.+.+|.+.. +      .+++.+...++.+++.++.|+++||+++++++.++.++.+++.++.....+.+
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLA  323 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHH
Confidence            3444455 44566888887 7      89999999999999999999999999999998888888888887777777888


Q ss_pred             HHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      .+++..++.|++.+...+ ..+++.+..|++.||+++++.+....+|.++++.+++.+.
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        324 SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888889998777665 4889999999999999999999999999988888877664

>PRK09848 glucuronide transporter; Provisional

Probab=99.06  E-value=9.4e-10  Score=102.05  Aligned_cols=148  Identities=16%  Similarity=0.139  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      .+....+..++............|++.+ .+|.+...      .++......++..++.++.+++.||+|+|+++.++.+
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~  302 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGAL  302 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3333333334333333334444454443 34554433      4444444456778899999999999999999999988


Q ss_pred             HHHHHHHHhhhh--hhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc-------chhhhHhHHHHHHHhHHHHHHHhh
Q 018727          121 SVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       121 ~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      +..++.++..+.  .+.+.+++..++.|+|.+...+. .++.+|..|.+       ++|...++.+....+|..+++.+.
T Consensus       303 ~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        303 LGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            888777666554  35666667777888887776664 88888887653       458899999999999999999999


Q ss_pred             hhhcC
Q 018727          191 GFLAQ  195 (351)
Q Consensus       191 ~~l~~  195 (351)
                      +.+.+
T Consensus       383 g~~l~  387 (448)
T PRK09848        383 AFILG  387 (448)
T ss_pred             HHHHH
Confidence            98876

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.06  E-value=1.7e-09  Score=111.71  Aligned_cols=147  Identities=14%  Similarity=0.092  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      ++.+.+..++..+....+..++|.+.+ .+|.+..+      .+++.+.+.++.+++.++.|+++|+.++++.+..+.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~  300 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL  300 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence            333344444444444445556666554 47888888      99999999999999999999999988877766666555


Q ss_pred             HHHHHHHhhhh--------------------hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHH
Q 018727          122 VVIFNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG  180 (351)
Q Consensus       122 ~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~  180 (351)
                      .+++.+..++.                    .+.+.+++..++.|++.+...+ ..+++.+.+|++.||+++|..++...
T Consensus       301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~  380 (1140)
T PRK06814        301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA  380 (1140)
T ss_pred             HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence            55544433332                    5667777788888988877766 59999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhcC
Q 018727          181 IGLIIGPALGGFLAQ  195 (351)
Q Consensus       181 ~g~~~~~~~~~~l~~  195 (351)
                      +|..+++++.+.+..
T Consensus       381 ~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        381 AFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.05  E-value=3.7e-09  Score=94.53  Aligned_cols=142  Identities=25%  Similarity=0.278  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~  162 (351)
                      .|.+.+...+..++.-.+..++.+|+|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+.... +.-|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88889999999999999999999999999999999999999999999999999999999999998777666 49999999


Q ss_pred             ccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhcccccc
Q 018727          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  240 (351)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~  240 (351)
                      +|+|..++...+. +.+.++|.++.+.++|.+.|                +.|++..+.+.+.+.++. ++..+.+++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            9999988888874 78999999999999999999                667776666666555544 44455555544


Q ss_pred             c
Q 018727          241 H  241 (351)
Q Consensus       241 ~  241 (351)
                      +
T Consensus       405 ~  405 (412)
T PF01306_consen  405 K  405 (412)
T ss_dssp             S
T ss_pred             c
Confidence            3

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.04  E-value=4.7e-09  Score=95.60  Aligned_cols=119  Identities=12%  Similarity=0.049  Sum_probs=78.9

Q ss_pred             HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018727           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (351)
Q Consensus        67 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  146 (351)
                      +.+++|.+..+      .+.+.+...++..++.++.+++.||+|||+++.++..+..++.++....++.+.....-.+.+
T Consensus       230 ~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  303 (392)
T PRK10473        230 LMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLIC  303 (392)
T ss_pred             HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888877      888888889999999999999999999999999998888887777766655544344334433


Q ss_pred             hhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          147 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+.+...+ .....+..|.++|+   +.......++..+++.+++.+.+
T Consensus       304 ~g~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        304 AGFSVGFG-VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHHHhH-HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322221 12233444544443   33334455666666666666665

>PRK11043 putative transporter; Provisional

Probab=99.02  E-value=1.4e-08  Score=92.75  Aligned_cols=129  Identities=11%  Similarity=0.036  Sum_probs=93.0

Q ss_pred             hhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hh--hhh
Q 018727           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GL--SVN  134 (351)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~  134 (351)
                      .....|.+.+++|.+..+      .++......++..++.++.+++.||+|+|+.+.....+.+++.+..   ..  .++
T Consensus       222 ~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (401)
T PRK11043        222 WLTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS  295 (401)
T ss_pred             HHHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            344567777788888887      8887777788888999999999999999987655544444333221   11  234


Q ss_pred             HHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+.+++...+.|++.+...+. .....|..| ++|+++.++++.....+..+++.+.+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            455555556677776665554 666667766 579999999998888888888888888876

>PRK10133 L-fucose transporter; Provisional

Probab=99.00  E-value=6e-09  Score=96.17  Aligned_cols=126  Identities=11%  Similarity=0.062  Sum_probs=95.8

Q ss_pred             hhhHHHH-H-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 018727           61 FPFLYFM-I-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (351)
Q Consensus        61 ~~~~~~~-~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (351)
                      ..+.+.+ . +.+|.++.+      .++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. .
T Consensus       278 ~~~~~~~l~~~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~  350 (438)
T PRK10133        278 WSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-G  350 (438)
T ss_pred             HHHHHHHHhhhcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-H
Confidence            3444433 3 457999988      99999999999999999999999999999999888777766665555544432 2


Q ss_pred             HHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +....+.|++.+...|. .....|.+|++ .+.+.++... ..+|+.++|.+.|.+.+
T Consensus       351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHH
Confidence            44566788888887774 88888887753 5677777754 44788888899998887

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.00  E-value=3.5e-09  Score=98.81  Aligned_cols=149  Identities=11%  Similarity=0.047  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.+..+....++.....+......+++.+....+...      .+++.+...++..++.+++++++||+|+|+.+.++.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            3444444444444444444444444444433223333      5666666668888999999999999999999988877


Q ss_pred             HHHHHHHHhhh-----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcc-------ccchhhhHhHHHHHHHhHHHHHH
Q 018727          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP  187 (351)
Q Consensus       121 ~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~  187 (351)
                      +..++.+....     .++.+.+++.-++.|++.+...+. .++++|..+       .+..|..++......-+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            66655544322     345566666677788887776664 888999865       34455688888999999999999


Q ss_pred             HhhhhhcC
Q 018727          188 ALGGFLAQ  195 (351)
Q Consensus       188 ~~~~~l~~  195 (351)
                      .+.|.+.+
T Consensus       385 ~i~g~~l~  392 (473)
T PRK10429        385 FFIGVVLG  392 (473)
T ss_pred             HHHHHHHH
Confidence            99999886

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.99  E-value=9.4e-09  Score=94.52  Aligned_cols=174  Identities=14%  Similarity=0.189  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC---------h
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR---------K  112 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r  112 (351)
                      ++.+++..+........+...+|.+.+ -+|++-.+      .|++.++..+...+..+++|.++||.-+         |
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            446778888888888888888986655 47999888      9999999999999999999999998855         2


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHhhhhc-ccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHh
Q 018727          113 PVIIMGTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLN-GLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (351)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~-g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  189 (351)
                      ..-.++....+++.+..++.++... ..+..+..+.+. |.... ...-..|. .+++-+..+|+.+....+.++++|.+
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~  412 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLL  412 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2333445555555555565542111 111111222221 22211 22223333 45678999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (351)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (351)
                      .+.+.+ .+ .           +-.|+.+|.+.+++.++..+.+.+.
T Consensus       413 vg~~~~-~~-t-----------~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  413 VGIIVT-DN-T-----------REEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eeeEeC-CC-C-----------HHHHHHHHHHHHHHHHHhchheeEe
Confidence            999985 11 0           4457777788777776665544444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.98  E-value=9.7e-10  Score=97.20  Aligned_cols=196  Identities=14%  Similarity=0.019  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchh--hhhHHHHH-HHHHHHHHhhhhhhhhhhhhcChHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIG--SYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIM  117 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~  117 (351)
                      +.++..+..+|+.-+..+..+.....+.+..++.+.+.+..  ...+.... +...++..+..+...++|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            34445667778777888888888888998888877663320  01111122 2233445577788899999999999999


Q ss_pred             HHHHHHHHHHHhhhhhh----HHHHHHHHHHhhh-h-cccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          118 GTASVVIFNTLFGLSVN----FWMAVLTRFLLGS-L-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~-~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      +.+++.+..+..+...+    -..+++...+..+ + .|...+...+.+|.||.+.|++.-|+..+++-.|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999998888877655    1223333333333 2 3344445778899999999999999999999999999999988


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCC
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD  247 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  247 (351)
                      ++.+..  |+.         ..+.+..+++.+.+.++..+..+++||++++..++.
T Consensus       464 ~~t~~~--yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei  508 (538)
T KOG0252|consen  464 YLTDHN--YPP---------NIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEI  508 (538)
T ss_pred             Hhhhcc--CCc---------cccchHHHHHHHHHHHHhHheeEEeecccccCHHHh
Confidence            887632  322         334555668888888888888899999987665443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.97  E-value=2.7e-08  Score=90.66  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=97.2

Q ss_pred             HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018727           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (351)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  145 (351)
                      ...+.+|.++.+      .|++.+...++..+++++.+++.||.++|+++..+.. .++...+.+..++++...+..++.
T Consensus       231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344567888888      9999999999999999999999999999988887753 344444455566777677777788


Q ss_pred             hhhcccchh-HHHHHhhhccccc-hhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       146 G~~~g~~~~-~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      |++.+...+ ..+.+.+..|++. +|++.++.+....+|..++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            988777665 4777778766654 799999999999999999999988664

>PRK09669 putative symporter YagG; Provisional

Probab=98.93  E-value=8.1e-09  Score=95.69  Aligned_cols=112  Identities=20%  Similarity=0.280  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH-hhh-hhhHHHHHHHHHHhhhhcccchhH-HHHHh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-FGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~  160 (351)
                      .+.+.....+...++.+++++++||+|+|+.+..+.++..+.... ... .++.+.+++..++.|++.+...+. .++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666777888999999999999999998887665543332 222 356667777778889988777775 88999


Q ss_pred             hhccc-------cchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      |..+.       +..|...+..+.+..+|..+|+.++|.+.+
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88862       334567788888999999999999999887

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.91  E-value=3.7e-08  Score=89.18  Aligned_cols=124  Identities=17%  Similarity=0.180  Sum_probs=81.8

Q ss_pred             hhhHH-HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHh---hhh-hhH
Q 018727           61 FPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNF  135 (351)
Q Consensus        61 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~  135 (351)
                      ....| .+.+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+.++..+..+..+..   ... .+.
T Consensus       214 ~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGF  287 (377)
T ss_pred             HHcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33334 345567888888      9999999999999999999999999999999888876544433222   111 234


Q ss_pred             HHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHH-HHHhHHHHHHHhhh
Q 018727          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGG  191 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~  191 (351)
                      +.+.+...+.+.+.+.... ...++.|..| ++|+++.++.+. ...+|..+++.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4443333333333333333 3556677766 789999988754 34577777776654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.91  E-value=9.4e-09  Score=95.60  Aligned_cols=121  Identities=7%  Similarity=-0.037  Sum_probs=101.1

Q ss_pred             HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh----------hhHHHH
Q 018727           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (351)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l  138 (351)
                      +.+|.++.+      .|++.....++..++....+.+.+|++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            467999998      9999999999999999999999999999999999999888877554311          233344


Q ss_pred             HHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       139 ~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ...-++.+++.+.... ...++.+..|++.+|+..++.+...++|..+++.+++.+.+
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555677777666444 58999999999999999999999999999999999999988

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.86  E-value=2.2e-08  Score=92.03  Aligned_cols=127  Identities=21%  Similarity=0.244  Sum_probs=90.8

Q ss_pred             hhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-----cChHHHHHHHHHHHHHHHHhhhh----
Q 018727           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVIIMGTASVVIFNTLFGLS----  132 (351)
Q Consensus        62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~~~~~~~~~~~~~~~~~~~----  132 (351)
                      +..|.+.+++|+++.+      ...+.+...+. -...++.|.++|-+     .||+-++++.++..++.+.++..    
T Consensus        11 ~~~~~l~~~l~ls~~~------~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~   83 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQ------LQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE   83 (433)
T ss_pred             HHHHHHHHHcCCCHHH------HHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc
Confidence            4457788899999988      76666665544 34678899999986     35556667777765555544442    


Q ss_pred             hhHHHHHHHHHHhhhhcccchhH-HHHHhhhcc--ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+.....+.-++..+|.....++ -+++.|...  ++.||...+.......+|++++..++|.+.+
T Consensus        84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~  149 (433)
T PF03092_consen   84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD  149 (433)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            34555555556666777666664 778888763  2337888888888999999999999999988

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.85  E-value=1.7e-07  Score=80.97  Aligned_cols=153  Identities=16%  Similarity=0.118  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~  119 (351)
                      +..+.+.+..-++.+.+++...++|.+..|.|+|..+      .|++.+...+.....++....+.+|. .+|+..+...
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            4455666666677888899999999999999999999      99999999999999999999999975 4667777777


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhcc-ccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (351)
                      .++.++...+.+.+.-..++. -++.|+|.|...+ +...+.+..+ +++-+...+..+..+.+=..+||.+.|++-|.+
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            777777776666654333332 4889999777666 4777776665 445556666777777777788999999999855


Q ss_pred             CCC
Q 018727          198 EKY  200 (351)
Q Consensus       198 ~~~  200 (351)
                      ++|
T Consensus       361 gsw  363 (395)
T COG2807         361 GSW  363 (395)
T ss_pred             CCh
Confidence            433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.83  E-value=2.6e-11  Score=112.48  Aligned_cols=163  Identities=18%  Similarity=0.221  Sum_probs=102.4

Q ss_pred             cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhh--h---h
Q 018727           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L---S  132 (351)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~---~  132 (351)
                      +....+.+.+.++.+.+...     ....   ...+...++.++..++.||+|||++++.+..+.+++.+..+  .   .
T Consensus       270 ~~~~~~~~~i~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~  341 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNSF-----LATL---ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGV  341 (451)
T ss_pred             cccccccccccccccccccc-----cccc---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34444556666666666551     0222   23344456777778999999999999999888887776654  1   1


Q ss_pred             hh----HHHHHHHHHHh--hhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccc
Q 018727          133 VN----FWMAVLTRFLL--GSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (351)
Q Consensus       133 ~~----~~~l~~~r~l~--G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw  206 (351)
                      ++    -...++.-.+.  +++.+.......+.+|.+|++.|+++.++......++++++|.+...+.+.          
T Consensus       342 ~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~----------  411 (451)
T PF00083_consen  342 SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN----------  411 (451)
T ss_pred             ccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            11    11111111122  222233333468889999999999999999999999999999888777662          


Q ss_pred             cccccCcc-chhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727          207 ESLFGKFP-YFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (351)
Q Consensus       207 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (351)
                            .+ +.......++..+..++.++++||++.+..
T Consensus       412 ------~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  412 ------LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             ------ccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence                  11 222223333444445567788999986544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.82  E-value=5.6e-07  Score=86.27  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=112.0

Q ss_pred             hhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHHHHHHHHHHHHhhhhhh------
Q 018727           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN------  134 (351)
Q Consensus        62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~------  134 (351)
                      .+..++.+.+|.+...      ...+...+....-+..+++|+++|+ +||++++.++.++..++..+.++...      
T Consensus         9 iLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~   82 (654)
T TIGR00926         9 ILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP   82 (654)
T ss_pred             HHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence            3345566678888877      7777777777778889999999996 69999999999998888877765321      


Q ss_pred             --HHHHHHHHHHhhhhcccchhH-HHHHhhhcccc---chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc
Q 018727          135 --FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (351)
Q Consensus       135 --~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~  208 (351)
                        ....+++-.+..+|.|.+-++ .+...|.++++   .|-..+.++..+.++|+.+++.+.+++.+..+.+..      
T Consensus        83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~------  156 (654)
T TIGR00926        83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC------  156 (654)
T ss_pred             hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------
Confidence              123445556666787777775 88999998754   366778888999999999999999888742111111      


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHHh
Q 018727          209 LFGKFPYFLPCLCISLFAFGVTIAAF  234 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (351)
                         ..+|...+.+.++..++.+++..
T Consensus       157 ---~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       157 ---QDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             ---CcchHHHHHHHHHHHHHHHHHHH
Confidence               12455556666666555554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.80  E-value=2.1e-07  Score=80.91  Aligned_cols=139  Identities=31%  Similarity=0.493  Sum_probs=110.3

Q ss_pred             HHhhccccchhhhHHHHHHhhcccc--cccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727           51 LCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~  128 (351)
                      +.............+.+..+++.+.  ..      .++..+...++..++.++.|.++||+|||+.+..+......+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~   85 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL   85 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence            3333555666677777777776665  35      788999999999999999999999999998888887655555555


Q ss_pred             hhhhhh--HHHHHHHHHHhhhhcccchhH-HHHHhhhccc-cchhhhHhHHHH-HHHhHHHHHHHhhhhhcC
Q 018727          129 FGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       129 ~~~~~~--~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~  195 (351)
                      ..+..+  .+.+++.|++.|++.+...+. .+++.|++|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555554  888999999999988876665 8999999998 678999998877 688899999988887775

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.79  E-value=1.6e-07  Score=82.92  Aligned_cols=242  Identities=11%  Similarity=-0.021  Sum_probs=146.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH-HHHHHHHHHHhhhhhh--HHH-HHHHHHHhhhhcccchhH-H
Q 018727           82 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TASVVIFNTLFGLSVN--FWM-AVLTRFLLGSLNGLLGPI-K  156 (351)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~~~--~~~-l~~~r~l~G~~~g~~~~~-~  156 (351)
                      .+.+...++..+..++.+|+.|.++|+.|+||..+.. ..+..++..+..+.++  ++. .++...+..++.....+. .
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            3477888888888899999999999999987665544 4444444455555443  444 444445566666556665 8


Q ss_pred             HHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh--hhhcCCCCCCCC-cccccccccCccchhHHHHHHHHHHHHHH-H
Q 018727          157 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYPN-LFSSESLFGKFPYFLPCLCISLFAFGVTI-A  232 (351)
Q Consensus       157 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~  232 (351)
                      +++.+..++++-++..++-.....+|+.+.-+..  +.+....++.+. .++-...- .-.-|..+.++++..++..+ .
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhHH
Confidence            9999999998888888777777777777655543  222111111100 00000001 22334445555555444433 3


Q ss_pred             HhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 018727          233 AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP  312 (351)
Q Consensus       233 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      ++..++.++...+   ......+.           -++-..+.+++.+++++..+++..+++.-...+...+-..|....
T Consensus       217 ~~~v~~~~~~~~~---~~~~l~~g-----------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~  282 (438)
T COG2270         217 ILNVHDAEKISSP---PPTALRNG-----------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD  282 (438)
T ss_pred             Hhccccccccccc---chHHHHHH-----------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3344443321101   10111000           111223456677788899999999998888888888888888755


Q ss_pred             CCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          313 KKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       313 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                           +|++..+...+.....+..+++.+..
T Consensus       283 -----~gls~~~lll~g~~~~vvA~lg~ii~  308 (438)
T COG2270         283 -----LGLSSTELLLIGIALSVVAALGAIIA  308 (438)
T ss_pred             -----cCccHHHHHHHHHHHHHHHHHHHHHH
Confidence                 89999998888777777777665554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.79  E-value=3.2e-07  Score=83.67  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=87.4

Q ss_pred             HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH-HHHHHHHHhhh--hhhHHHHHHHHH
Q 018727           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA-SVVIFNTLFGL--SVNFWMAVLTRF  143 (351)
Q Consensus        67 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~r~  143 (351)
                      +.+.+|.+..+      .+++.....++..++.++.+++.||++++........ ...+.......  ..+.+.+....+
T Consensus       234 ~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T PRK11652        234 MGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA  307 (394)
T ss_pred             HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            33447888877      8888888888888999999999999984333322222 22222122221  234566677778


Q ss_pred             HhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       144 l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +.|++.+...+. ..+..|.+| ++++++.++.+....+|..+++.+++.+.+
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            888887776664 777888887 578999999999999999999999988865

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.79  E-value=1.2e-07  Score=86.76  Aligned_cols=144  Identities=13%  Similarity=-0.029  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhc--ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQ--IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +....+..++..........+++.+.++.+  .+...      .+...+.+..+..++.++++++.||+++|+++.++.+
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~------a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~  307 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF------AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAI  307 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            333344444444444444566666665543  22223      3445566667788999999999999999999988888


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..+..++....++... ...-++.|++.+...| ......+..+++.+....++..  ..+|+.+.|.+.|.+.|
T Consensus       308 ~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       308 IGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHH
Confidence            88888877777666444 4455566666555445 5888888888665433333333  33999999999999998

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.78  E-value=2.2e-08  Score=90.14  Aligned_cols=128  Identities=18%  Similarity=0.134  Sum_probs=85.9

Q ss_pred             HHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH
Q 018727           48 IIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (351)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~  126 (351)
                      +..++............|.+. +.+|.++.+      .+++.+...+...++.+++|+++||+|||+.+..+..+...+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVT------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHH
Confidence            333333333344455555554 457888888      8888888888999999999999999999988777766555554


Q ss_pred             HHhhh--hh--hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhH
Q 018727          127 TLFGL--SV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG  182 (351)
Q Consensus       127 ~~~~~--~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g  182 (351)
                      .+...  ..  +.+.+++.-.+.+++.|.... ...++.|..| +++|+++|+.+...++|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       306 FLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            44433  22  454444444444444444333 4667778777 68999999988877765

>PRK11462 putative transporter; Provisional

Probab=98.74  E-value=3.7e-07  Score=84.84  Aligned_cols=112  Identities=14%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhhhcccchhH-HHHHh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~  160 (351)
                      .+.+...+.++..++.+++++++||+|+|+++..+..+..+..++..+.  ++...+++.-++.|++.+...+. .++++
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788888999999999999999998775544443333322222  22333444455667766555554 67777


Q ss_pred             hhcc-------ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          161 EIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       161 ~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      |..+       .+..|..++....+..+|..+++.++|.+.+
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766       3334555567778888999999999988876

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.74  E-value=2.2e-06  Score=76.55  Aligned_cols=161  Identities=20%  Similarity=0.224  Sum_probs=120.1

Q ss_pred             hhH-HHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018727           62 PFL-YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (351)
Q Consensus        62 ~~~-~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (351)
                      |++ |++.+. .|++..+-     ..-+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-
T Consensus        24 Pfl~~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq   98 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQ   98 (412)
T ss_pred             ccchHHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence            444 444443 67777661     12334445556677888999999999999999999999888888888899999999


Q ss_pred             HHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHH
Q 018727          140 LTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC  219 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~  219 (351)
                      +..++.|++.+.-.+..+++-...|+++-.++.+....+..+|..++.+++=.+..              ++..++....
T Consensus        99 ~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs--------------~~~~sy~~L~  164 (412)
T PF01770_consen   99 LMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS--------------FGGVSYFQLN  164 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcCCCHHHHH
Confidence            99999999877655557888778888888888888888888888888887766654              1144556666


Q ss_pred             HHHHHHHHHHHHHHhccccccc
Q 018727          220 LCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      .+......++++..+++|..++
T Consensus       165 ~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  165 YISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCc
Confidence            6666666666677777887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1e-07  Score=84.66  Aligned_cols=145  Identities=21%  Similarity=0.326  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII  116 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~  116 (351)
                      +.++.+....+...+.+..-..+.+++.++.|++...      .+.+-...-+...+.+++.|..+||    |||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            4555666666666666666677778888889998877      5555555556668899999999995    89887655


Q ss_pred             H-HHHHHHHHHHHhhhhhhHHHH------------HHHHHHhhh-----hc-ccchhHHHHHhhhccccchhh-hHhHHH
Q 018727          117 M-GTASVVIFNTLFGLSVNFWMA------------VLTRFLLGS-----LN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (351)
Q Consensus       117 ~-~~~~~~~~~~~~~~~~~~~~l------------~~~r~l~G~-----~~-g~~~~~~~~~~~~~~~~~r~~-~~~~~~  176 (351)
                      . +.+...++.++..++.++..+            .+.-++.|+     +. -...|+-++++|.+..+++-+ +.+.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            4 456666666676665543221            222333443     22 335567889999998877777 999999


Q ss_pred             HHHHhHHHHHHHhhh
Q 018727          177 TAWGIGLIIGPALGG  191 (351)
Q Consensus       177 ~~~~~g~~~~~~~~~  191 (351)
                      ....+|+.+|..+++
T Consensus       186 ~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHhcceeeeeccc
Confidence            999999999888776

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=6.2e-08  Score=84.50  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=116.3

Q ss_pred             HHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--ChHHHHHHHHHHHHHH
Q 018727           50 VLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFN  126 (351)
Q Consensus        50 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~  126 (351)
                      ....+......-|.++. ..+.+..+..+      .|+..--..+.++++..+.|.++||++  |......+++..++++
T Consensus       279 i~~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~  352 (464)
T KOG3764|consen  279 ITFSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS  352 (464)
T ss_pred             hhhccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence            33444555666677776 44556644446      787777788999999999999999999  6555556667777777


Q ss_pred             HHhhhhhhHHHHHHHHHHhhhhcccchh----HHHHHhhhcccc---chhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCC
Q 018727          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGP----IKAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (351)
Q Consensus       127 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~----~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (351)
                      ....+++++..+++-++..+++.+....    ...++.|.-..+   .-|...++...++++|..+||.++|.+.+    
T Consensus       353 ~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~----  428 (464)
T KOG3764|consen  353 GPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE----  428 (464)
T ss_pred             chhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee----
Confidence            7778899999999998888887666443    233444444444   56788999999999999999999999998    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHH
Q 018727          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV  229 (351)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  229 (351)
                                  ++++.+...+.++..++-
T Consensus       429 ------------~iGF~wl~~iig~~n~iy  446 (464)
T KOG3764|consen  429 ------------AIGFEWLMTIIGILNLIY  446 (464)
T ss_pred             ------------ehhHHHHHHHHHHHHHHH
Confidence                        666666666665555553

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.71  E-value=5.5e-07  Score=85.04  Aligned_cols=183  Identities=14%  Similarity=0.154  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  120 (351)
                      +.+..+.+..+.+..+.+....+.+.+.+..+.+.+.       .+...+..+...++..++..+.||+|||+.++.+..
T Consensus       295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~  367 (513)
T KOG0254|consen  295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAA  367 (513)
T ss_pred             HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHH
Confidence            3344555566666667777778888888887776542       223344455567777788999999999999999999


Q ss_pred             HHHHHHHHhhhhhhH-----------H--HHHHHH-HHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHH
Q 018727          121 SVVIFNTLFGLSVNF-----------W--MAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~-----------~--~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  186 (351)
                      .+.++.++.+.....           .  .+.... ++..+..+.......+.+|.+|.+.|+++.++......+...+-
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI  447 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence            999988877653211           1  111111 22223333333347789999999999999998766666555544


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhccccccccCCC
Q 018727          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHND  245 (351)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~  245 (351)
                      ......+.+.       .++...|        +.+.++..+... .+.+++||++.+..+
T Consensus       448 ~~~~~~~~~~-------~~~~~~f--------~~f~~~~~~~~~~fv~~~~pETkg~sle  492 (513)
T KOG0254|consen  448 SFFFPFITEA-------LGIGGTF--------GYFGGICLLSLIIFVFFFVPETKGLTLE  492 (513)
T ss_pred             HHHHHHHHHh-------ccccchH--------HHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence            4443333331       1111111        233333333444 577889998765543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.68  E-value=4.7e-08  Score=88.32  Aligned_cols=141  Identities=22%  Similarity=0.333  Sum_probs=116.3

Q ss_pred             HHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 018727           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~  128 (351)
                      ..++.+.....+..++--..++.+..+.-      .|........+-.+.-++.+++..|+|+-+++..++.+..+=.+.
T Consensus       379 ~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~  452 (618)
T KOG3762|consen  379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLY  452 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHH
Confidence            33344444555555555567777755555      676666667777888889999999999999999999999998999


Q ss_pred             hhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcC
Q 018727          129 FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+...|.|+.+-.-+++|+..+.... +.+|++...|++.|.++.++. ....++|-.+|.+++|.+.+
T Consensus       453 ~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~  521 (618)
T KOG3762|consen  453 YSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE  521 (618)
T ss_pred             HHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence            99999999999999999998777666 599999999999999999987 55677999999999999998

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.66  E-value=6.8e-07  Score=83.45  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhh----hhhh-hcChHHH--HHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGL----VADR-YGRKPVI--IMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGS  147 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~----l~dr-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~  147 (351)
                      .+++.+...+.-.+.+++..+    +.|| .+.+...  .+|.++.+++....++         ..+++++++..++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            567777777777777776554    4444 2333433  6778888777766653         4688999999999999


Q ss_pred             hcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      |.....|. ..++++..|++.||+++|++.....+|..+++.+......
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99888886 9999999999999999999999999999999998877654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.62  E-value=4.9e-07  Score=79.33  Aligned_cols=147  Identities=18%  Similarity=0.153  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .+.+..-.+..++..........+++.+.++ .|.++.+      .+...+.+..+..+|.+.+-++..|+...|.+.+.
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~  308 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY  308 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3455556667777777777888888887777 7778888      89999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .++..+.++..+++++...++ .-++.|+..+...| +.+...+..| ++ ....+..-.+..+|+++.|.+.|++.|
T Consensus       309 a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         309 ALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHH
Confidence            888888888888888855544 34566777667666 5888888888 33 444555556777899999999999998

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.60  E-value=9.6e-07  Score=80.16  Aligned_cols=149  Identities=12%  Similarity=0.207  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.+..+++..++.....+..+....++.+. +|.++..      ..+.......+..++.+++..+++|+|+|+++.++.
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~  309 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL  309 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence            334444555555555555566655555432 2333333      556666677777778999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh--hHHHHHHHHHHhhhhcccchhH-HHHHhhhcc-------ccchhhhHhHHHHHHHhHHHHHHHh
Q 018727          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPAL  189 (351)
Q Consensus       120 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~  189 (351)
                      ++..++.++..+.+  +.+.+++..++.+++.+...+. .++++|..+       .|.-|...+......=+|..++..+
T Consensus       310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999887776654  6778888888988988877775 777777664       3444677778888888999999988


Q ss_pred             hhhhcC
Q 018727          190 GGFLAQ  195 (351)
Q Consensus       190 ~~~l~~  195 (351)
                      .|++..
T Consensus       390 ~g~~L~  395 (467)
T COG2211         390 PGWILG  395 (467)
T ss_pred             HHHHHH
Confidence            888876

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.59  E-value=1.7e-06  Score=76.58  Aligned_cols=167  Identities=17%  Similarity=0.124  Sum_probs=124.5

Q ss_pred             ccccchhhhH-HHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhcChHHHHHHHHHHHHHHHHhh--
Q 018727           55 LPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFG--  130 (351)
Q Consensus        55 ~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~--  130 (351)
                      +.++...+.+ |+=-+-||++..+      ...+......+..++-...|++.. |.++++...+++....++..+..  
T Consensus       222 ~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  222 LAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            3444455566 4556679999999      888999999999999999998877 67888888888887777765543  


Q ss_pred             -hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccc
Q 018727          131 -LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (351)
Q Consensus       131 -~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~  208 (351)
                       ...+.+.+...-++.|++.|.+.+. ...+-|...+++.|..+|.+..+..++..++..++|.+.|........     
T Consensus       296 ~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-----  370 (403)
T PF03209_consen  296 GPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-----  370 (403)
T ss_pred             HhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence             3457788888999999999999885 778889999999999999999999999999999999887622111000     


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHH
Q 018727          209 LFGKFPYFLPCLCISLFAFGVTIAA  233 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~  233 (351)
                      .. ..+|-.+|.+-++..++.+++.
T Consensus       371 ~~-~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  371 SP-ALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             Cc-chHHHHHHHHHHHHHHHHHHHH
Confidence            00 3445666666655555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.51  E-value=3.8e-06  Score=65.12  Aligned_cols=107  Identities=21%  Similarity=0.191  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc
Q 018727           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~  166 (351)
                      .++......+++++.+.+.+++|.|+.++++.+...+..... +-++.+.++.+-++.|++.+...+. ..++.+..+++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            445556678888999999999999999999998888665544 4556788889999999999998886 78999999999


Q ss_pred             chhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .|++..++.......+.++|.++.-.+.+
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988888888888877655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.50  E-value=3.6e-06  Score=79.08  Aligned_cols=108  Identities=8%  Similarity=-0.041  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHhhhhh----hhhhhhhcChHHHHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHhhhhcc
Q 018727           84 AGYVGSSFMFGRALTSVFW----GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN---------FWMAVLTRFLLGSLNG  150 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g  150 (351)
                      .+++.++..+...+..++.    +++.||++..+.+.++.++.+++.+..+...+         .++++...++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555666665555555555    66666677778888999999999888766554         4578889999999999


Q ss_pred             cchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ...|. ..++.+..|++.||+++|.+.....+|..++..+..
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98886 999999999999999999888877777777776664

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.49  E-value=4.9e-07  Score=61.62  Aligned_cols=79  Identities=16%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             hccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhh
Q 018727           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (351)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~  133 (351)
                      +++...+.|.+|.+.+|.++|.++      .+++.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++.+
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456778899999999999999999      99999999999999999999999998889999999999999999999988


Q ss_pred             hHHHH
Q 018727          134 NFWMA  138 (351)
Q Consensus       134 ~~~~l  138 (351)
                      +.+..
T Consensus        79 ~~~~w   83 (85)
T PF06779_consen   79 SFWLW   83 (85)
T ss_pred             chHHH
Confidence            77654

Note that many members are hypothetical proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.45  E-value=1.2e-05  Score=73.98  Aligned_cols=145  Identities=9%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHhhcccc-----cccchhhhhHHHHHHHHHHHHHh-hhhhhhhhhhhcChHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKPV  114 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~  114 (351)
                      ++++...+..++..+.++..    -.+.+.+..+.     +.      +.++-+...+...+. .++.+++++|++|+++
T Consensus         7 ~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l   76 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL   76 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence            45555666666665555443    34455555532     33      667777666655555 8899999999999998


Q ss_pred             HHHHHHHHHHHHHHhhhh-----hh--------------------------HHHHHHHHHHhhh-hcccchhH-HHHHhh
Q 018727          115 IIMGTASVVIFNTLFGLS-----VN--------------------------FWMAVLTRFLLGS-LNGLLGPI-KAYACE  161 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~-----~~--------------------------~~~l~~~r~l~G~-~~g~~~~~-~~~~~~  161 (351)
                      +-+..........++++.     +.                          .|...+..+...+ +.-..+.. +.++.|
T Consensus        77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand  156 (472)
T TIGR00769        77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877666555555554432     11                          1111122222222 22223324 889999


Q ss_pred             hccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+..++-.+-+++...+.++|.++++.+..++.+
T Consensus       157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.43  E-value=7.3e-06  Score=75.24  Aligned_cols=148  Identities=9%  Similarity=-0.006  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.++...+...+............|.+.++ +|.+..+      .++.......+..++..+.+.+.+|.++++.+....
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  291 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAV  291 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence            344433333333333334444455655554 5888888      888877777788888888877665444444432222


Q ss_pred             HHHHHHHHHhh-----hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          120 ASVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       120 ~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      .+..++..+..     ..++++..++..++.++|.+...+. .. .+..-....+|++.++.+.....+..+++..++++
T Consensus       292 ~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        292 PIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222221     1233334456667777777666553 32 22222233479999999888888889999998888


Q ss_pred             cC
Q 018727          194 AQ  195 (351)
Q Consensus       194 ~~  195 (351)
                      .+
T Consensus       371 ~~  372 (413)
T PRK15403        371 WF  372 (413)
T ss_pred             HH
Confidence            65

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.42  E-value=1e-06  Score=59.54  Aligned_cols=69  Identities=23%  Similarity=0.523  Sum_probs=59.3

Q ss_pred             HHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      -..+++.....+...|++|.+.++.|++..+      +|.+.++..+...++++++|.++||+++++.++....+
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445556667778889999999999999999      99999999999999999999999999999887766544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.39  E-value=6e-06  Score=71.84  Aligned_cols=269  Identities=14%  Similarity=0.093  Sum_probs=145.6

Q ss_pred             CchHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHH--Hhhhhhhhhhh-----hhc
Q 018727           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRA--LTSVFWGLVAD-----RYG  110 (351)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d-----r~G  110 (351)
                      ..++.++.+.+.+++++...+... .+|.+.+.-|.|..+      .+    .+.+++-  .--+++.++.|     |+|
T Consensus        28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a----~fS~ay~P~sLKllWaPiVDs~y~k~~G   96 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QA----IFSFAYWPFSLKLLWAPIVDSVYSKRFG   96 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hh----hhhhhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            334667788888999999998888 889999877888776      43    3333333  34568999999     999


Q ss_pred             ChHHHHH-HHHHHHHHHHHhhh-----------hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHH
Q 018727          111 RKPVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST  177 (351)
Q Consensus       111 rr~~~~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~  177 (351)
                      |||.-++ +..+.+......+.           .++...+....++.-+..+.... +-.+.-.+..+++-|.+......
T Consensus        97 rrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~V  176 (510)
T KOG3574|consen   97 RRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSV  176 (510)
T ss_pred             cccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence            9986432 23333333333332           12333344455555565555544 35666667777777776666666


Q ss_pred             HHHhHHHHHHHhhhhhcCC------CCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccc
Q 018727          178 AWGIGLIIGPALGGFLAQP------AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSC  250 (351)
Q Consensus       178 ~~~~g~~~~~~~~~~l~~~------~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~  250 (351)
                      +...|.+++..+.-.+...      .-++|..-|.-..   .++   ..+.+.+.++. .+..++-+|.+.. ..  ++.
T Consensus       177 g~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL---~gy---~~fwg~~~~vat~Lv~~~kke~~~~-~~--~e~  247 (510)
T KOG3574|consen  177 GQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITL---AGY---LWFWGALFIVATTLVALLKKENDES-VD--EEL  247 (510)
T ss_pred             HHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEh---hHH---HHHHHHHHHHHHHHHHHhcCCCchh-hh--hhh
Confidence            6666666655443222210      0011111111000   000   11122222222 2233332222211 00  000


Q ss_pred             hhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHH
Q 018727          251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA  330 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~  330 (351)
                      +..              .....+..+++++-|.+..++......-....+.....++-+.+      .|.+....++...
T Consensus       248 ~~~--------------i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle------~Gv~ke~Lal~~v  307 (510)
T KOG3574|consen  248 ELG--------------IHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE------HGVPKEELALIAV  307 (510)
T ss_pred             hcC--------------HHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH------cCCChhHheeeee
Confidence            000              11112245667777888888888888888888888888877766      6888777766553


Q ss_pred             HHhhhHH-hhhcccccc
Q 018727          331 ITGTKVD-THILPFKID  346 (351)
Q Consensus       331 ~~~~~~~-~~~~~~~~~  346 (351)
                      ...-..+ +....+|+.
T Consensus       308 ~~~plqI~l~~~~gk~t  324 (510)
T KOG3574|consen  308 PLVPLQIALPLYIGKWT  324 (510)
T ss_pred             ehhhHHHhhhhhheeec
Confidence            3333333 344455554

>PTZ00207 hypothetical protein; Provisional

Probab=98.39  E-value=4.3e-06  Score=79.03  Aligned_cols=183  Identities=11%  Similarity=0.067  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhh-cc-cccccchhhhhHH-HHHHHHHHHHHhhhhhhhhhhhhcCh----
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF-QI-AKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRK----  112 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr----  112 (351)
                      ..++|.++...++.......+..-+.++.+.+ |. .+.+      ... ++++..++.++|.+..|.++...-+|    
T Consensus       352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~  425 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAED  425 (591)
T ss_pred             chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhcccc
Confidence            45677778877777766666666677888888 65 2222      122 67888888899999888887222221    


Q ss_pred             ----H-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHH
Q 018727          113 ----P-VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (351)
Q Consensus       113 ----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  186 (351)
                          + .+.+..+ +.++.+++++.-....+++..++.|++.|...++ ...++|+|. |+-|+...+...+..+|+.+-
T Consensus       426 r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~  503 (591)
T PTZ00207        426 RVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFL  503 (591)
T ss_pred             ccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHH
Confidence                2 2333333 5555555555533368899999999999998775 899999999 888999998888888888876


Q ss_pred             -HHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727          187 -PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (351)
Q Consensus       187 -~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (351)
                       -.+.|.+.|....   ..|-..-.|+..++.++++.+.+++...+..
T Consensus       504 n~~l~G~~Yd~ea~---k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s  548 (591)
T PTZ00207        504 NRLLYGEWYTQQAD---KLGQDVCTERVCVVMPLAFLLGLSFLAFITS  548 (591)
T ss_pred             HHHHHHHHHHHHHh---hCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence             5677777763221   0122234456778999998888877766543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.35  E-value=8.1e-06  Score=76.43  Aligned_cols=111  Identities=12%  Similarity=0.069  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChH-------HHHHHHHHHHHHHHHhh-----h-----hhhHHHHHHHHHHhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKP-------VIIMGTASVVIFNTLFG-----L-----SVNFWMAVLTRFLLG  146 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-------~~~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~r~l~G  146 (351)
                      .+++.+...+...+..++.+++.||+|+|+       -+.+|.++.+++.+..+     .     ..+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            455666666777788899999999999997       36667777666653221     1     135677778889999


Q ss_pred             hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      +|.+...+. ..++.+..|++.++.++|+++...++|+.++..++....
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~  439 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998886 899999999999999999999999999999988886553

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.33  E-value=6.4e-07  Score=82.88  Aligned_cols=142  Identities=14%  Similarity=0.128  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----hcChHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVI  115 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~  115 (351)
                      ..++...+..++.....+....++|.+.++ .|.+..+      .+.+...+.++.+++.+++|+++||    ..+|...
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~  346 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF  346 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            345567777888888899999999999888 5688878      8888999999999999999999999    6666666


Q ss_pred             HHHHHHHHHHH-HHhhhhhhHHHHHHHHHHhh-hhcccchhH-HHHHhhhccccc-hhhhHhHHHHHHHhHHHHHHHh
Q 018727          116 IMGTASVVIFN-TLFGLSVNFWMAVLTRFLLG-SLNGLLGPI-KAYACEIFREEH-QALGLSTVSTAWGIGLIIGPAL  189 (351)
Q Consensus       116 ~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G-~~~g~~~~~-~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~  189 (351)
                      .....+..+.. .......+.... ...++.| .+.....++ ....++...... |-...+....+.+.++.++|.+
T Consensus       347 ~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~  423 (495)
T KOG2533|consen  347 IVFLCLYAIIGAISLLAAAVLPGA-YGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL  423 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhccchHH-hHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence            55554444433 333333222222 2222333 233333333 566666665443 3344445555555555555444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.28  E-value=5.5e-05  Score=70.00  Aligned_cols=183  Identities=14%  Similarity=0.000  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHH-HHh-hcccccccchhhh-----hHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSY-----AGYVGSSFMFGRALTSVFWGLVADRYGR-KPV  114 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~  114 (351)
                      +..+++..++.-++...+..+...+ .++ |+-++..++ .++     ..+....+.+...+.+++.-++.+|+|+ |++
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~-~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA-KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            3445555555555544444333333 322 443332211 111     2233344445555777788889999995 677


Q ss_pred             HHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHHHHhhhhcccchhH-HHHHhhhccc--cchhh
Q 018727          115 IIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQAL  170 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~--~~r~~  170 (351)
                      ..++.++.+++.....+.++                     .+..++...+.|+..+....+ ++++++..++  ++.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            78888888877766654432                     256667777888887777666 8999999885  45599


Q ss_pred             hHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhcccccc
Q 018727          171 GLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETL  240 (351)
Q Consensus       171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~  240 (351)
                      .+|+.|.+..+.+++..+..|.+.+..       |       .+-...+.+.++..++.. +..+.+|+++
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~-------g-------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLF-------G-------GGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHc-------C-------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999998888865522       1       112234455555555544 4455667654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.25  E-value=4.8e-05  Score=72.12  Aligned_cols=144  Identities=19%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHhhhhccc-chhHHHHHh
Q 018727           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGL-LGPIKAYAC  160 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~g~-~~~~~~~~~  160 (351)
                      ..................+.+.|++|||.....+.++..++.++.+.......   ..+...+..++.+. +.....+.+
T Consensus       353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
T KOG0255|consen  353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA  432 (521)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455566667789999999999999999999999988887654332   33333333333333 344588999


Q ss_pred             hhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHH-HHHHHHHHHHHHhccccc
Q 018727          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC-ISLFAFGVTIAAFWLPET  239 (351)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~  239 (351)
                      |.+|+..|..+.+..+....+|++++|.+.......               ..  ...... .....+...+..+++||+
T Consensus       433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~~--~~~~~~~~~~~~l~~~~~~~~lpet  495 (521)
T KOG0255|consen  433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------FP--LLGLILFGWLALLLGLLSLLLLPET  495 (521)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------cc--cchHHHHHHHHHHHHHHHHhcCccc
Confidence            999999999999999999999999999987555320               00  111122 223333444556889999


Q ss_pred             cccCCC
Q 018727          240 LHRHND  245 (351)
Q Consensus       240 ~~~~~~  245 (351)
                      ......
T Consensus       496 ~~~~l~  501 (521)
T KOG0255|consen  496 KGKPLP  501 (521)
T ss_pred             CCCCCc
Confidence            876653

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=8.6e-05  Score=67.67  Aligned_cols=107  Identities=19%  Similarity=0.114  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc
Q 018727           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~  166 (351)
                      .++......+++++.+.+.|++|.|+.++++........+.+-.. |-+.++..-.+.|+|.+..... ..+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            566777888999999999999999999999998888877666444 5667788889999999998886 78999999999


Q ss_pred             chhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .+.+..++.......+.++|..+...+..
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~  163 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQ  163 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence            99999999888888888888776655544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.09  E-value=2.4e-05  Score=73.73  Aligned_cols=194  Identities=18%  Similarity=0.157  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hccccc---ccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcCh-HHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKR---EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-PVI  115 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-~~~  115 (351)
                      |.+....+..++.++.++....+.|..... |+-+..   .      .++......++..++.++.|.+.-+++|- +.+
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL  383 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence            334444555666666666666666655443 433332   3      56777778888889999999999988874 455


Q ss_pred             HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          116 IMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      +++.++..+++.+++.  .+|....+..-++.|++.|.... ......-..|+++-+++.++....-.+|+.+|..+..-
T Consensus       384 i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5666666554444433  34555556677788888777554 46666667899999999999888888888877665433


Q ss_pred             hcCCCC---------------CC-----------------------CCc---------ccccccccCccchhHHHHHHHH
Q 018727          193 LAQPAE---------------KY-----------------------PNL---------FSSESLFGKFPYFLPCLCISLF  225 (351)
Q Consensus       193 l~~~~~---------------~~-----------------------~~~---------~gw~~~~~~~~~~~~~~~~~~~  225 (351)
                      +....-               +.                       |+.         ..-+..| ..+|+.+++.....
T Consensus       464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaF  542 (599)
T PF06609_consen  464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAF  542 (599)
T ss_pred             HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            321000               00                       000         0012233 34678888888888


Q ss_pred             HHHHHHHHhccccccc
Q 018727          226 AFGVTIAAFWLPETLH  241 (351)
Q Consensus       226 ~~~~~~~~~~~~e~~~  241 (351)
                      +.+.+++.+++++..+
T Consensus       543 G~vaiiaa~fl~d~~~  558 (599)
T PF06609_consen  543 GVVAIIAALFLGDIDK  558 (599)
T ss_pred             HHHHHHHHHHcCChHH
Confidence            8888888888887654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.08  E-value=0.00086  Score=61.18  Aligned_cols=271  Identities=11%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHhhcc-cccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQI-AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      +.++...++.....-+.....+.+..+..- +.--      .+...-.-.+...+..+..|...||..|.+++-.+.+.-
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q   78 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ   78 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence            344555555555555555555555555421 2111      333333444566778888899999999998876664332


Q ss_pred             HH----HHHHhh--h--hh----hHHHHHHHH---HHhhhhcccchhHH--HHHhhhcc------ccchhhhHhHHHHHH
Q 018727          123 VI----FNTLFG--L--SV----NFWMAVLTR---FLLGSLNGLLGPIK--AYACEIFR------EEHQALGLSTVSTAW  179 (351)
Q Consensus       123 ~~----~~~~~~--~--~~----~~~~l~~~r---~l~G~~~g~~~~~~--~~~~~~~~------~~~r~~~~~~~~~~~  179 (351)
                      -+    ++.+..  +  ..    +.+....+.   .+.|...-....+.  ++=-||..      ++.+.+..+...-.=
T Consensus        79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRID  158 (432)
T PF06963_consen   79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRID  158 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHH
Confidence            22    221111  1  11    112222222   22222112222222  22233432      223333333444344


Q ss_pred             HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhc-------cccccccCCCCCccch
Q 018727          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFW-------LPETLHRHNDDDDSCD  251 (351)
Q Consensus       180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~e~~~~~~~~~~~~~  251 (351)
                      .+.-+++|++.|.+.+                ..+......+.++..++.+.. +++       .|+-..++..++++.+
T Consensus       159 L~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~  222 (432)
T PF06963_consen  159 LFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS  222 (432)
T ss_pred             HHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence            4688999999999987                444454444444444444322 221       2221111111111111


Q ss_pred             hhHH------HhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhh
Q 018727          252 VSYD------ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (351)
Q Consensus       252 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  325 (351)
                      ...+      ..........+.-......|+..++++.++. .+...+.++.-.++...+..|+.+      .|+++..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~------~G~s~~~i  295 (432)
T PF06963_consen  223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKS------QGYSPSVI  295 (432)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHH------CCCCHHHH
Confidence            1000      0000001111111222345666777765544 444445555567788888889888      59999999


Q ss_pred             HHHHHHHhhhHHhhhccc
Q 018727          326 GEVLAITGTKVDTHILPF  343 (351)
Q Consensus       326 g~~~~~~~~~~~~~~~~~  343 (351)
                      |.+-+...+.++.+.+..
T Consensus       296 gi~R~~gav~Gl~gT~~~  313 (432)
T PF06963_consen  296 GIFRGLGAVFGLLGTWVY  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988887777765544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=6.4e-05  Score=69.26  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=107.3

Q ss_pred             HHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhh-hhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018727           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL  144 (351)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  144 (351)
                      +....++++..+      .+.+.+...+...+++.+.. .+...+|-|+++.+|++.-.+...+.+++++.|+.+...++
T Consensus       267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            345568888888      88888888888888888776 78888999999999999999999999999999999999888


Q ss_pred             hhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       145 ~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .++.........+.++-+..++++|+++++......+..+++|.+-+.+..
T Consensus       341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            877765555568999999999999999999999999999999998887754

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.93  E-value=0.0012  Score=59.40  Aligned_cols=134  Identities=17%  Similarity=0.103  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc
Q 018727           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~  163 (351)
                      +.+.-+-.+...+..+.+.++.+|+..+.=+.++.++..++.++.+++++.+.-+++-++.+++.|..... ..+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            34555555666777788889999988665555566788888888899999988888888888888877665 444 4466


Q ss_pred             cccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHh-cccc
Q 018727          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPE  238 (351)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  238 (351)
                      ++    ..++.+..+.+.++++|+..-..+.+ .              ..+.+........+.++..+.++ .+|+
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~--------------g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-L--------------GLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-h--------------CcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            64    24667777777777777766544432 1              34445555555555555544444 3443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.77  E-value=0.00036  Score=61.22  Aligned_cols=121  Identities=14%  Similarity=0.069  Sum_probs=103.1

Q ss_pred             HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--ChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018727           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (351)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  146 (351)
                      +.+|.++.+      .|-+.+...+...+.+....+..||..  -+-.+..++.++.-..++.+.++....+..+-.+-.
T Consensus       290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS  363 (451)
T ss_pred             CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            568888888      888888888888888888888888887  677778888888888888888888888888888888


Q ss_pred             hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      +..+...++ ..++....|.++||.+.|+......++-++||.++|.+..
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            876666665 8888899999999999999999999999999999988875

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.66  E-value=0.00096  Score=60.75  Aligned_cols=284  Identities=14%  Similarity=0.117  Sum_probs=138.5

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHh--hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-----hhcChHHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII  116 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~~~  116 (351)
                      ..+.+.+++++...+.....+|.+.++  -+.|.++      .+...-+ ..- .-.-++|.++.|     |+||||.-+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla-~~P-fSlKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLA-SYP-FSLKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeee-ech-hHHHHhhhhhhhhhcccccCCcchhh
Confidence            356778889999888877788888887  6777776      4322211 000 112345666666     899998755


Q ss_pred             HHH-HHHHHHHHHhhhhh----------------------h--HHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhh
Q 018727          117 MGT-ASVVIFNTLFGLSV----------------------N--FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQAL  170 (351)
Q Consensus       117 ~~~-~~~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~  170 (351)
                      +-. .+.++..+..+...                      +  ...+....++.-+..+.... +-.+.-.+..+++++.
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence            432 33333322222111                      0  11222333233333333332 3444555667788887


Q ss_pred             hHhHHHHHHHhHHHHHHHhhhhhcCCCC------CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCC
Q 018727          171 GLSTVSTAWGIGLIIGPALGGFLAQPAE------KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (351)
Q Consensus       171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (351)
                      +......+.++|.+++..+.-.+.+..-      +.|...|.   . ..+=. ..+.+.+..++...+.++-+|.+..+.
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~gl---v-tl~~y-l~fwg~~~l~~T~~v~~~k~E~~~~~~  229 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGL---V-TLSGY-LKFWGWVFLIVTILVAFFKKEKPHSES  229 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCe---e-eHHHH-HHHHHHHHHHHHHHHheEeeccccccc
Confidence            7777777777777776665544432100      01111111   1 00100 111122222233344455555442221


Q ss_pred             CCC-cc---chhhHHH--hhhhhhh--hhhh---hhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCC
Q 018727          245 DDD-DS---CDVSYDA--LESASAE--VKEE---EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  313 (351)
Q Consensus       245 ~~~-~~---~~~~~~~--~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                      ..+ +.   .+...++  .+..+.+  ..++   -.+.-+...+++|-|++..+++.....-....+......+=+.+  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE--  307 (544)
T PF13000_consen  230 LPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE--  307 (544)
T ss_pred             CccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH--
Confidence            110 00   0000000  0000000  0000   11112334566788999998888888888777777777665655  


Q ss_pred             CCCcccCchhhhHHHHHHHh-hhHHhhhcccccc
Q 018727          314 KLGGLNYSTQMVGEVLAITG-TKVDTHILPFKID  346 (351)
Q Consensus       314 ~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~~~~  346 (351)
                          .|++.+..+.+..+.. +-.+++-+.+||.
T Consensus       308 ----kG~~KE~LAl~~li~~P~qii~~~~~~Kws  337 (544)
T PF13000_consen  308 ----KGLSKEDLALLVLIDFPFQIILPYYIGKWS  337 (544)
T ss_pred             ----cCCCHHHhHHHHHHhhhHHHHHHHHhhhhh
Confidence                6888888776655433 3333344555543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.64  E-value=7.3e-05  Score=62.28  Aligned_cols=101  Identities=18%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             cccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhH
Q 018727           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (351)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +-....|++.++.+++++...+      ++.+..+..-...+...+.|-++||-|||+..+.-++-..++++ .-.++.+
T Consensus        52 gDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqY  124 (454)
T KOG4332|consen   52 GDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQY  124 (454)
T ss_pred             hhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCce
Confidence            4445667777778888998888      88777777777778888999999999999976655555544443 3356788


Q ss_pred             HHHHHHHHHhhhhcccchhH--HHHHhhhc
Q 018727          136 WMAVLTRFLLGSLNGLLGPI--KAYACEIF  163 (351)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~--~~~~~~~~  163 (351)
                      -.++++|++-|+..+....+  .-++.|--
T Consensus       125 kVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  125 KVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             EEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            89999999999987775543  44677765

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.52  E-value=8.9e-05  Score=66.31  Aligned_cols=147  Identities=17%  Similarity=0.080  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcC-hHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~  121 (351)
                      +..+.+.+.......+.....+......-|.+...      .|++.....++..+++.+.|.+.||... |.++.+....
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~  341 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLF  341 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            33333333333333344444433233334555555      8888899999999999999999999875 4455555555


Q ss_pred             HHHHHHHhhh-h---hhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          122 VVIFNTLFGL-S---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       122 ~~~~~~~~~~-~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ..++.+.... .   ...+.++..-.+.|++.....|. .-+-.|..-+..-++-.|+.++..++-+++-.++.+...+
T Consensus       342 ~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~  420 (480)
T KOG2563|consen  342 ALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE  420 (480)
T ss_pred             HHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence            5554322221 1   22234444555666655455555 6676776544444667888887777777777777777776

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.49  E-value=0.00062  Score=61.59  Aligned_cols=109  Identities=16%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHhhhhcccchhH-HHHHhhhcccc---chhhhHhHHHHHH
Q 018727          113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  179 (351)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~  179 (351)
                      |+++++.++..+|.++..++.         +...++++-.+.++|.|..-+. .++.+|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567778888888887744321         2356788888899999998885 99999999865   4667778899999


Q ss_pred             HhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccc
Q 018727          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (351)
Q Consensus       180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      ++|..+++.+.+++.+                +.+|...|.+..+..+++++.++.-.
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            9999999999999987                66777777777777666666555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.48  E-value=0.0041  Score=58.03  Aligned_cols=111  Identities=14%  Similarity=0.061  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcC--h----H-HHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGR--K----P-VIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLGS  147 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r----~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~  147 (351)
                      .++..++..+.-.+.+|+.+++=.|.+|  |    + =+.+++++.+++.+.+.++         .+.+++++..++..+
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            6777888877777778877777566532  2    1 1566777777777655431         256778888899999


Q ss_pred             hcccchhH-HHHHhhhccccchhhhHhHHHHH-HHhHHHHHHHhhhhhc
Q 018727          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGGFLA  194 (351)
Q Consensus       148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~  194 (351)
                      |.-+..|+ .+.+++..|++.||+.+|.+... ..+|..++..+++...
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98888886 99999999999999999998664 3677777777666553

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.47  E-value=0.0061  Score=56.68  Aligned_cols=149  Identities=13%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      +++++.+.+..++..+.++..    -.+.+.+=++....+.   +..+=....+ ...+...+..++++|++|.+++-+.
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~---I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~   95 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEV---IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            456666666666665554332    2222222111111000   3333332222 3455677889999999999988766


Q ss_pred             HHHHHHHHHHhhhh---------hh----------------------HHHHHHHHHHhhh-hcccchhH-HHHHhhhccc
Q 018727          119 TASVVIFNTLFGLS---------VN----------------------FWMAVLTRFLLGS-LNGLLGPI-KAYACEIFRE  165 (351)
Q Consensus       119 ~~~~~~~~~~~~~~---------~~----------------------~~~l~~~r~l~G~-~~g~~~~~-~~~~~~~~~~  165 (351)
                      .........++++.         ++                      .|...+..+..-+ |.-..+.. +.+..|.++.
T Consensus        96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~  175 (491)
T PF03219_consen   96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV  175 (491)
T ss_pred             HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            65555544444331         00                      1112122222222 11112333 7889999999


Q ss_pred             cchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++-.+..++...+.++|.+++..+..++.+
T Consensus       176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888877765

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.001  Score=59.97  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcCh----HHHHHHHHHHHH-------HHHHhh-hhhhHHHHHHHHHHhhhhccc
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVI-------FNTLFG-LSVNFWMAVLTRFLLGSLNGL  151 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~-------~~~~~~-~~~~~~~l~~~r~l~G~~~g~  151 (351)
                      ..++..+...+..+|.+++|.++||+-|+    ....+.-+..+.       ...+.. ...+...+.+..++.|.....
T Consensus       285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~  364 (493)
T KOG1330|consen  285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW  364 (493)
T ss_pred             chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            55666777788899999999999994321    122222111111       111111 122222333334455553333


Q ss_pred             ch--hHHHHHhhhccccchhhhHhHHHHHH-HhHHHHHHHhhhhhcCCC
Q 018727          152 LG--PIKAYACEIFREEHQALGLSTVSTAW-GIGLIIGPALGGFLAQPA  197 (351)
Q Consensus       152 ~~--~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~~  197 (351)
                      ..  +...+..|+.|+++|.+++++-.... ..|.+-+|.+.|.+.+..
T Consensus       365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            22  23567789999999999999875544 456666776888888754

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.30  E-value=0.014  Score=55.46  Aligned_cols=158  Identities=13%  Similarity=0.064  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHH
Q 018727           40 ITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM  117 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~  117 (351)
                      ++....+.....+..+.. +.....+.++..+++.+...      +.-..+.+.-......+.+++++|- +||-+++.+
T Consensus        36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~  109 (571)
T KOG1237|consen   36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINI  109 (571)
T ss_pred             hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            343333333333333333 33456667888888888876      7777777777778888999999996 488899999


Q ss_pred             HHHHHHHHHHHhhhhhh-------------------------HHHHHHHHHHhhhhcccchhH-HHHHhhhcc---c-cc
Q 018727          118 GTASVVIFNTLFGLSVN-------------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---E-EH  167 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~---~-~~  167 (351)
                      +.++..++..+..+...                         ...++...-+..+|.|..-++ .++-+|-++   + +.
T Consensus       110 ~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~  189 (571)
T KOG1237|consen  110 GSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV  189 (571)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh
Confidence            98888877544433111                         123444555566677777775 888888888   3 22


Q ss_pred             hh--hhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 018727          168 QA--LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (351)
Q Consensus       168 r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~  210 (351)
                      +.  .-+..+....++|..++-.+..++.+       ..||...|
T Consensus       190 ~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf  227 (571)
T KOG1237|consen  190 KGIPSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGF  227 (571)
T ss_pred             hCcccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeec
Confidence            23  56677888999999999988888876       56664444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.23  E-value=0.00073  Score=62.32  Aligned_cols=149  Identities=15%  Similarity=0.187  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh-h---------hhHHHHHHHHHHhhhhccc-c
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-S---------VNFWMAVLTRFLLGSLNGL-L  152 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r~l~G~~~g~-~  152 (351)
                      .+.+..+..++..++..+.....-+..-|+++..+.++..+..+.... .         ++.+..+.--++..+..+. +
T Consensus       257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~  336 (433)
T PF03092_consen  257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF  336 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence            666666677777778777777666778888888877776665543221 1         1112222223344443333 4


Q ss_pred             hhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCccccc-ccccCccchhHHHHHHHHHHHHHH
Q 018727          153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-SLFGKFPYFLPCLCISLFAFGVTI  231 (351)
Q Consensus       153 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~  231 (351)
                      .|...+++|++|+..-|+.+++.....++|..++..++..+.+.       ++.. ..|  .+.+...+++.+..++.+.
T Consensus       337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~-------~~vt~~~f--~~l~~lili~~~~~ll~l~  407 (433)
T PF03092_consen  337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL-------FGVTRDDF--SNLWLLILICSVIQLLPLP  407 (433)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcccc--cchHHHHHHHHHHHHHHHH
Confidence            55678899999999999999999999999999999999988873       3321 112  1222333444444445555


Q ss_pred             HHhccccccc
Q 018727          232 AAFWLPETLH  241 (351)
Q Consensus       232 ~~~~~~e~~~  241 (351)
                      ...++|+.++
T Consensus       408 ll~lLp~~~~  417 (433)
T PF03092_consen  408 LLFLLPPQKR  417 (433)
T ss_pred             HHHHcCCCch
Confidence            5556776543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.03  E-value=0.018  Score=51.92  Aligned_cols=108  Identities=17%  Similarity=0.217  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHH
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA  159 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~  159 (351)
                      ..+....+.+|-+++.--...+  |+.+-+.+.+.-++-.+..   ...-+.++.|..++.-+..|+..|...+ ....+
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I  360 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI  360 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            6666777777766665433222  4433333222222222222   2233457888888888999997666555 57777


Q ss_pred             hhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      .|-.++++|..++|....+-++|..++.+++-.+
T Consensus       361 ~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  361 SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8888999999999999999999999998887554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.024  Score=52.09  Aligned_cols=107  Identities=17%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhh---hcChHHHHHHHHHHHHHHHHhhhh------------------hhHHHHHHHH
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADR---YGRKPVIIMGTASVVIFNTLFGLS------------------VNFWMAVLTR  142 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr---~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r  142 (351)
                      .++..-...++..++..+.+.+++|   +||++.+.++..+..++.++..+.                  +++....+.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            4444445556667777777788765   688999888887777777665431                  2345566677


Q ss_pred             HHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       143 ~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ++.|++-+..... +.++.+.+ +++|..+.++.-.-..+++.++-+...
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8888888777775 88999988 566888888887777777766555543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.72  E-value=0.063  Score=49.15  Aligned_cols=149  Identities=11%  Similarity=0.201  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      +++++.+.+..++..+.++    .+-.+.+.+-++....+.   +.++-+...+ +.++..++..++.++.-|++++-..
T Consensus        26 ~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~---I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          26 LKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAES---ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchh---hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            4556666666665555443    334455555554222111   5555555555 5677888999999999999988776


Q ss_pred             HHHHHHHHHHhhhh---------hh-----------H------------HHHHHHHHHhhh-hcccchhH-HHHHhhhcc
Q 018727          119 TASVVIFNTLFGLS---------VN-----------F------------WMAVLTRFLLGS-LNGLLGPI-KAYACEIFR  164 (351)
Q Consensus       119 ~~~~~~~~~~~~~~---------~~-----------~------------~~l~~~r~l~G~-~~g~~~~~-~~~~~~~~~  164 (351)
                      +.......+++++.         ++           .            |...+...+.=+ +.=..+-. .....|.+.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            66666666555541         11           0            111111111111 11112223 678889999


Q ss_pred             ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      .++-.+-+++++...+++..++..+..++..
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999988888876

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.69  E-value=0.002  Score=59.24  Aligned_cols=83  Identities=23%  Similarity=0.409  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH-HHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TAS  121 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~  121 (351)
                      +..+=+.++......+.+.|.++.+.+++|+++++      .|.+...--+..+++.|++|+++||+-+||.++++ .++
T Consensus        13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~------~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~   86 (618)
T KOG3762|consen   13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAV------VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLL   86 (618)
T ss_pred             hheeeeeeeeeeecccccchHHHHHHHHcCCCHHH------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHH
Confidence            33333444555667788889999999999999999      99999999999999999999999999877665555 555


Q ss_pred             HHHHHHHhhh
Q 018727          122 VVIFNTLFGL  131 (351)
Q Consensus       122 ~~~~~~~~~~  131 (351)
                      ...+.++..+
T Consensus        87 ~v~a~fll~f   96 (618)
T KOG3762|consen   87 SVTATFLLVF   96 (618)
T ss_pred             HHHHHHheee
Confidence            5555555444

>PRK03612 spermidine synthase; Provisional

Probab=96.64  E-value=0.11  Score=49.17  Aligned_cols=120  Identities=15%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH---HHHHHhhhhhh----H-HHHH
Q 018727           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV---IFNTLFGLSVN----F-WMAV  139 (351)
Q Consensus        68 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~~~~~----~-~~l~  139 (351)
                      ..-+|-+...      .+.+.+++..+.++|+.+++++.++.-++.. .+-..+..   ++..+......    . ..++
T Consensus        42 ~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~  114 (521)
T PRK03612         42 SYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLY  114 (521)
T ss_pred             HHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345766667      8899999999999999998887644332222 11111111   11111111111    1 1122


Q ss_pred             HHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ...++.++..|...|. ..+..+. ..++-+...|-.+....+|+++|.++.+++.-
T Consensus       115 ~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        115 VLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            2334455555555554 3333222 22234567788888888999999888877763

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.52  E-value=0.011  Score=51.56  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             HHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHh
Q 018727           94 GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLS  173 (351)
Q Consensus        94 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~  173 (351)
                      .+.+.-++.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+.-..-++++-+..+++++.++.+
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHH
Confidence            44555556667899999999998877777777777778888887766777666654433334788888889999999999


Q ss_pred             HHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccc
Q 018727          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (351)
Q Consensus       174 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (351)
                      ....+.-.|-..|..++-.+....              ...+.....+......+..+..+++|..++
T Consensus       134 y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  134 YCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             HhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence            888888888888887776666411              334445555555555666677777777663

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.41  E-value=0.051  Score=49.81  Aligned_cols=127  Identities=8%  Similarity=-0.119  Sum_probs=86.9

Q ss_pred             hhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhh---h---h-
Q 018727           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---S---V-  133 (351)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~---~-  133 (351)
                      ...+..+...-|+++..      +|..-+...+....+.+...++.+|+|..|.=.++...-..+..++..   .   + 
T Consensus       278 ~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~  351 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF  351 (432)
T ss_pred             cHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            44454555556999998      999999999999999999999999999988877776544443333221   1   1 


Q ss_pred             ---hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          134 ---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       134 ---~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                         +...++.+-.+.=+|.=.+..+ .-++-|..|+++||...|.-....++-.++...+.-.+
T Consensus       352 ~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  352 SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               1122222222222231123344 77889999999999999999988888888887765433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.32  E-value=0.00098  Score=63.03  Aligned_cols=149  Identities=14%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhc--ChHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVII  116 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~  116 (351)
                      +.+....++.....+....+.++.|. +..+|+.+.++      ++++..+..+ +.++|.+++|++..|+.  .|..+.
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~  378 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK  378 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence            33445556666667777778888874 55679999888      7777766555 66789999999999985  344444


Q ss_pred             HHHHHHHHHHHHh---hh-----------hh----------------------------------------hHHHHHHHH
Q 018727          117 MGTASVVIFNTLF---GL-----------SV----------------------------------------NFWMAVLTR  142 (351)
Q Consensus       117 ~~~~~~~~~~~~~---~~-----------~~----------------------------------------~~~~l~~~r  142 (351)
                      ...+...++.++.   .+           ..                                        .+..+++..
T Consensus       379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~  458 (539)
T PF03137_consen  379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL  458 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence            4333333332220   00           00                                        011222222


Q ss_pred             HHhhhhccc-chhHHHHHhhhccccchhhhHhHHHHHHH-hHHHHHHHhhhhhcC
Q 018727          143 FLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLAQ  195 (351)
Q Consensus       143 ~l~G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~  195 (351)
                      ++.-+..+. ..|...++-+.+|+++|..++|+...... +|.+=||++-|.+.|
T Consensus       459 ~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD  513 (539)
T PF03137_consen  459 FILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID  513 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence            222222222 33345556688999999999999876555 688889999999988

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.29  E-value=0.19  Score=45.18  Aligned_cols=136  Identities=13%  Similarity=0.124  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      .+..++..+.....++...+..+++.+++-.+..+   ............+...+....-..+.-|..+|-..... +..
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~-~~~   95 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLS-LIA   95 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            34445555555667788888888888877544332   11122223333344445555555566562222111111 111


Q ss_pred             HHHHHHh--hh-------hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHH
Q 018727          123 VIFNTLF--GL-------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL  183 (351)
Q Consensus       123 ~~~~~~~--~~-------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~  183 (351)
                      .+....+  ..       ...+...++.-.+.+.+.|..... ....+ .+|+|.-...++-.+.++.+-+
T Consensus        96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~ytqavm~G~a~aG~l~S  165 (406)
T KOG1479|consen   96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYTQAVMSGQALAGTLTS  165 (406)
T ss_pred             HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHHHHHHhcchhHhHHHH
Confidence            1111111  11       123344445555666666665554 55554 4566654444443333333333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.10  E-value=0.14  Score=47.21  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcCh-------HHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLG  146 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G  146 (351)
                      .++..+...+.-.+.+++..++--+.+++       .-+-+++.+++.+.++....          .+.++++...++++
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            56777887777788888877777775443       23445566666665544332          35788889999999


Q ss_pred             hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhh
Q 018727          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (351)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (351)
                      +|.=+.+|. ..+++...|++-.+..++.+......|+.++..+++.
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~  452 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL  452 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence            998888886 9999999999999999999888888888887777663

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.97  E-value=0.025  Score=52.22  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=37.6

Q ss_pred             HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          155 IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       155 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ..+.-+|...+++++++.+.++.....+..++|++...+..
T Consensus       409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~  449 (488)
T KOG2325|consen  409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT  449 (488)
T ss_pred             HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence            47788999999999999999999999999999999988877

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.39  E-value=0.25  Score=45.65  Aligned_cols=107  Identities=14%  Similarity=0.029  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcCh--HHHH--HHHHHHHHHHHHhhhh---------hhHHHHHHHHHHhhhhcc
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVII--MGTASVVIFNTLFGLS---------VNFWMAVLTRFLLGSLNG  150 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~--~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g  150 (351)
                      .-.....++++-.+|..+..+.. .-++|  ++.+  ++-++.....++|..-         ++-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            45667778888888887665431 11222  3332  2233444444444322         355666677888999988


Q ss_pred             cchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ..... ..+..+..++++|..+..+...+..+|..+|..++-
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87774 777888888899998888989999999888887753

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.29  E-value=0.043  Score=53.36  Aligned_cols=80  Identities=11%  Similarity=0.201  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHH-hhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhcC--hHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGR--KPVIIM  117 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Gr--r~~~~~  117 (351)
                      .++...+..++..........++|.+.+ ++|++..+      .+++.....+ +.+++.+++|+++||+++  |+.+.+
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~  404 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYF  404 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHH
Confidence            3444555555666666677778876654 68999988      8888887665 568999999999999984  466666


Q ss_pred             HHHHHHHHHH
Q 018727          118 GTASVVIFNT  127 (351)
Q Consensus       118 ~~~~~~~~~~  127 (351)
                      +.++..++.+
T Consensus       405 ~~~~~~~~~~  414 (633)
T TIGR00805       405 AICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHHH
Confidence            6655555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.32  E-value=0.47  Score=41.35  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             HHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc
Q 018727           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (351)
Q Consensus        92 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~  163 (351)
                      ......++++.+.+..++|-|++++++..........- +-+.+..++-.-...|++.+..... -+|++++-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            34456667777799999999999998887766543322 3456778888888899988876654 55555543

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.28  E-value=0.13  Score=34.72  Aligned_cols=52  Identities=13%  Similarity=0.038  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      +..-..+++++....++..+++.|+.+      .|+++.++|.+.++..+..+++..+
T Consensus         3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~pl   54 (77)
T PF12832_consen    3 LPLKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAPPL   54 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345567778888888888899988887      7999999999999988888765543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.20  E-value=2.2  Score=39.49  Aligned_cols=50  Identities=18%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHH
Q 018727          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (351)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (351)
                      .++..++.-++.|++.+..... .++.+ .+|++.    ++.+..+.+++++++.+
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~  155 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSL  155 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHH
Confidence            4555566667778877776664 55554 677653    33344444444444443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.17  E-value=1.6  Score=39.68  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=69.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHH
Q 018727           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG--TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA  157 (351)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~  157 (351)
                      ..+-|.+-++..+..+++.+..|++..++.+..-+.++  .++.+...++++..++.|...++.++.+.......+ +..
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467888888888899999999997777775544433  445555566777888999988888877665444444 456


Q ss_pred             HHhhhccccchhhhHhHHHHH
Q 018727          158 YACEIFREEHQALGLSTVSTA  178 (351)
Q Consensus       158 ~~~~~~~~~~r~~~~~~~~~~  178 (351)
                      -++.....+.-+..+|+..+.
T Consensus       364 qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHhccccceeeeeeeHHHH
Confidence            666666677777787776553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.10  E-value=0.03  Score=49.18  Aligned_cols=105  Identities=19%  Similarity=0.154  Sum_probs=2.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhh-hcChHHHHHH--HHHHHHHHHHhhh----------hhhHHHHHHHHHHhhhhcccc
Q 018727           86 YVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG--TASVVIFNTLFGL----------SVNFWMAVLTRFLLGSLNGLL  152 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~--~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~~g~~  152 (351)
                      .....++++-.+|....++.-=+ -.+|++...+  -++.....+++..          .++-+..++.-++.|+..|..
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            35667888888888887764211 1344444332  2333333333311          234456666778889988887


Q ss_pred             hhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      ... ..+..+..++++|..+-.+...+..+|-.+|..++
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775 77888888899998888888888888888887665

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.74  E-value=3.2  Score=37.64  Aligned_cols=107  Identities=18%  Similarity=0.092  Sum_probs=73.2

Q ss_pred             hhHHHHHH-HHHHHHHhhhhhhhhhhhhcChHHHHHH--HHHHHHHHHHhh------hhhhHHHHHHHHHHhhhhcccch
Q 018727           83 YAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMG--TASVVIFNTLFG------LSVNFWMAVLTRFLLGSLNGLLG  153 (351)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~--~~~~~~~~~~~~------~~~~~~~l~~~r~l~G~~~g~~~  153 (351)
                      +.-+...+ +++...+|.+.+.++-++ +||...+..  -++..-...+|-      .-.+-+.++..-.+.|+..|-..
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            35555566 888889998888877665 344433322  223333333222      23456677788888999999888


Q ss_pred             hH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhh
Q 018727          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      .+ ..+..+..|++++-.+-.+.......|..+|..++
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            76 88888899999888887788888888887777665

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=91.52  E-value=1.9  Score=37.44  Aligned_cols=175  Identities=13%  Similarity=0.063  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHhhcccccc--------cc-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--------ED-IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  114 (351)
                      ...|+..+++++.+-.+....-++..+-.-++..        .+ ...-.|.+.-+-.+-..+..+.+..+.||+---.=
T Consensus        15 ~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~R   94 (409)
T KOG3880|consen   15 VAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGFR   94 (409)
T ss_pred             hHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccchH
Confidence            3456666677776655555444444332110000        00 00112333344445556667777778888643333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          115 IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      +.+..++.+.+..+.+++++.++-+.+-.+..++.|......--++..+++.    ..+.++.+.+.++.+|..--..+.
T Consensus        95 i~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT  170 (409)
T KOG3880|consen   95 IALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSSGTGGAGLIGASSYAFLT  170 (409)
T ss_pred             HHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCCc----eeccccCCCCcchhhhhhHHHHHh
Confidence            3344567777888889999999888888888887777655433344455433    233344444444445543333333


Q ss_pred             CCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (351)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +.             + +...+...++...+.++....++++
T Consensus       171 ~~-------------~-~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  171 SW-------------A-NLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             hh-------------c-CCChhhHHHHHHHHHHHHHHHHHhe
Confidence            20             1 3444555556555555555554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=90.79  E-value=8  Score=36.19  Aligned_cols=95  Identities=22%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChH--HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~  160 (351)
                      -|.+-++..+..++.++..|++-.++.+--  .+.+..++.+...++++..+|.|..+++.++.+.......++ ..-++
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA  379 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA  379 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777788888999999999977775532  333334555555677778899999999998887776665554 77777


Q ss_pred             hhccccchhhhHhHHHHH
Q 018727          161 EIFREEHQALGLSTVSTA  178 (351)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~  178 (351)
                      .....+.-|..+|+..+.
T Consensus       380 ~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       380 SSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHhcccceEEEEecHHHH
Confidence            777777778888887653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.64  E-value=2.6  Score=38.71  Aligned_cols=110  Identities=17%  Similarity=0.077  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhc-
Q 018727           86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-  163 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~-  163 (351)
                      |-..++.+...+.+...-+++||+|-|+.+..+.....++..+.+..++.+....-+-..|+-.+....+ +..+++.. 
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            4455666777888999999999999776666666656666666666777777777777777533332221 22111111 


Q ss_pred             --------------------c--ccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          164 --------------------R--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       164 --------------------~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                                          .  ...+|...|+.+....+.+++.....|.+.+
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~  469 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQ  469 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhh
Confidence                                1  1224566667788888888887777777776

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=85.69  E-value=0.85  Score=38.46  Aligned_cols=106  Identities=12%  Similarity=-0.015  Sum_probs=54.1

Q ss_pred             cchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCC
Q 018727          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (351)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (351)
                      |+|+........+.++|.++.-..--...+.          +. ..+.+|+..+.+.+++.++-++.+..+ +++-....
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~----------~~-~~~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~   69 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSV----------VI-ALTNNWQWILSIFILLIFIPLILYIIF-GKNFDIYS   69 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccC
Confidence            4566666666777788887764442111110          00 115567777777776666655555544 22211111


Q ss_pred             CCccchhhHHHhhhhhhhhhhhhhcccCcccccccccchHHHHHHHHHHH
Q 018727          246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS  295 (351)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  295 (351)
                      ++ ++++.           ++.....+.+..+.+|++..|..++.+..+-
T Consensus        70 ~~-~k~~k-----------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   70 PK-EKQEK-----------ENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             cc-ccccc-----------ccccccccchHHHHHccchHHHHHHHHHHHh
Confidence            11 00000           0001123356788899998888766665543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=85.59  E-value=4  Score=38.01  Aligned_cols=53  Identities=13%  Similarity=0.074  Sum_probs=38.2

Q ss_pred             HHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          143 FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       143 ~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++.-+..-...+ ..++-+.+.+|..=|++|.+.+...++|+---..+.-.+.+
T Consensus       413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            444444434444 48888999999999999999999999987655555545544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.93  E-value=0.89  Score=44.35  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhhc--ChHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVIIMG  118 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~  118 (351)
                      +....+...+.......+.+++|.+ .++|+.+.+.      +..++....+ +.++|.+++|++..|+.  .|....+.
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~  467 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASL------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV  467 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH------HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence            3355666677777788888899854 5578999888      7777765554 44678889999999874  34444444


Q ss_pred             HHHHHHH
Q 018727          119 TASVVIF  125 (351)
Q Consensus       119 ~~~~~~~  125 (351)
                      ++...+.
T Consensus       468 ~~~~~l~  474 (735)
T KOG3626|consen  468 IVCSVLS  474 (735)
T ss_pred             HHHHHHH
Confidence            4433333

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=81.89  E-value=7  Score=33.14  Aligned_cols=99  Identities=24%  Similarity=0.366  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhh-hcChHHHH----HHHHHHHHHHHHhhh-h----hhHHHHHHHHHHhhhh-cccc
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSL-NGLL  152 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~-~g~~  152 (351)
                      .....-++..+..+|....|..... +.||+.+.    .+.++..+..++... .    .+...+++.-++.|++ .|..
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555556667777888888877753 45666544    223344443333211 1    2356677777788875 5554


Q ss_pred             hhHHHHHhhh--ccccchhhhHhHHHHHHHhHHHH
Q 018727          153 GPIKAYACEI--FREEHQALGLSTVSTAWGIGLII  185 (351)
Q Consensus       153 ~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~  185 (351)
                      .+..-.--|.  ..+++-|..   ++..+++|-++
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~---Fg~iWGfGY~~  254 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQ---FGLIWGFGYIF  254 (267)
T ss_pred             HHHhcChhhhcCCCcceehhH---HHHHHHHHHHH
Confidence            4433322232  223333444   34455555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=81.24  E-value=49  Score=31.12  Aligned_cols=80  Identities=10%  Similarity=0.144  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHH
Q 018727           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (351)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  122 (351)
                      +..+++..++.+...+.+........++..-++  ++.+-..|.+.....+...+.+++.+++.+|+|-+....+.-++.
T Consensus       266 L~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~--~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       266 ILDLALLVIAYGISINLVEVTWKSKLKAQYPSP--NEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            334455555555555555444444444433222  222333555666666666777788899999999997766654444


Q ss_pred             HH
Q 018727          123 VI  124 (351)
Q Consensus       123 ~~  124 (351)
                      .+
T Consensus       344 li  345 (472)
T TIGR00769       344 LL  345 (472)
T ss_pred             HH
Confidence            33

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=80.70  E-value=22  Score=30.57  Aligned_cols=96  Identities=17%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcCh--HHHHHHHHHHHHHHHHhhh----hh---hHHHHHHHHHHhhhhcccchh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGTASVVIFNTLFGL----SV---NFWMAVLTRFLLGSLNGLLGP  154 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~g~~~~  154 (351)
                      -|.+.+.++++..+|+-+...+..|-..|  ..+.+..+..++...+.-+    ++   +...-+++..+.-.+.|.+.|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            68888999999999998888877765544  3444444444443332222    11   222223344444456778888


Q ss_pred             H-HHHHhhhccccchhhhHhHHHHHH
Q 018727          155 I-KAYACEIFREEHQALGLSTVSTAW  179 (351)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~  179 (351)
                      . ..+-+...|.+.|.+.+..+..-.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPL  389 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPL  389 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechh
Confidence            5 778888999999999988765433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=80.65  E-value=15  Score=26.81  Aligned_cols=42  Identities=14%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHH
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~  125 (351)
                      .+.......++..++..+.+.+.|..|.+..+.+...+..++
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            556666777888888889999999888877666554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-11
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-07
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-04
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 28/220 (12%), Positives = 59/220 (26%), Gaps = 36/220 (16%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI------FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197
           L  L G   G    +          + ++ +   +S  + A  +G  I P L        
Sbjct: 125 LLFLCGWFQGM--GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-- 180

Query: 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL------PETLHRHNDDDDSCD 251
                     +                    + +A F        P++       +   +
Sbjct: 181 ----WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQS-CGLPPIE---E 221

Query: 252 VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
              D  +  + + ++E   +    + +L N  L    I  
Sbjct: 222 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 45/272 (16%), Positives = 84/272 (30%), Gaps = 55/272 (20%)

Query: 38  LPITELFSIWIIVLCTALPISSLFPFL--YFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             +  LF +W +     L    L P     F + +FQ           AG + S+F FG 
Sbjct: 29  ALLCSLFFLWAVA--NNL-NDILLPQFQQAFTLTNFQ-----------AGLIQSAFYFGY 74

Query: 96  ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLL 152
            +  +  G++  +   K  II G     +   LF  +    N+ + ++  F++ +  G L
Sbjct: 75  FIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134

Query: 153 G-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL--------------AQPA 197
                 +   +  E      L+   T    G II    G  L                  
Sbjct: 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSP 194

Query: 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL 257
           E+      S  L  + PY +    + L A  + +     P     ++ D           
Sbjct: 195 EQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHSD----------- 241

Query: 258 ESASAEVKEEEGREATPKKSLLKNWPLMSSII 289
                    ++G  +     L +      +++
Sbjct: 242 --------AKQGSFSASLSRLARIRHWRWAVL 265

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 22/196 (11%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
             S+++I +     +       +F           E      GYV +      A    F 
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTS----FFATGEQGTRVFGYVTTMGELLNASIMFFA 279

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACE 161
            L+ +R G K  +++    + +       + +    V+ + L       L      Y   
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339

Query: 162 IFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
            F     A            + +I    L G                 ++    +    L
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN----------------MYESIGFQGAYL 383

Query: 221 CISLFAFGVTIAAFWL 236
            + L A G T+ + + 
Sbjct: 384 VLGLVALGFTLISVFT 399

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 34/265 (12%), Positives = 81/265 (30%), Gaps = 53/265 (20%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWP----LMSSIIVYCVFSLHDMAYSEIFS 306
                +   A+A               L +        +  I V C + + D  ++  F+
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 307 LWANSPKKLGGLNYSTQMVGEVLAI 331
            +  +          T++ G V  +
Sbjct: 249 SFFATG------EQGTRVFGYVTTM 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 57/354 (16%), Positives = 93/354 (26%), Gaps = 118/354 (33%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP--FKIDYRF 349
            Y+    F      P  L    Y    +G  L          +    F +D+RF
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.94
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.94
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.81
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.8
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.52
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.52
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.44
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.39
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.11
2xut_A	524	Proton/peptide symporter family protein; transport	98.89

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.96  E-value=1e-28  Score=226.36  Aligned_cols=274  Identities=15%  Similarity=0.137  Sum_probs=210.3

Q ss_pred             chHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .++.+..++...+..++..+...+.+|.+.+++|.+..+      .+++.+++.++..++.+++|+++||+|||++++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~   97 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence            445566677777888888889999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh---hhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          119 TASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       119 ~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      .++.+++.+++   +.+++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.+++|.+++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988   78899999999999999998887764 999999999999999999999999999999999999988


Q ss_pred             -CCCCCCC----------CcccccccccCccchhHHHHHHHHHHHHHHHHhc--cccccccCCCCCccchhhHHHhhhhh
Q 018727          195 -QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESAS  261 (351)
Q Consensus       195 -~~~~~~~----------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (351)
                       +..+..+          ...+|+... ..+|+.++.+.++..++..+..++  .||++++..++++             
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------  243 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------  243 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------
T ss_pred             hcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------
Confidence             4111000          000000000 011666666655555444433333  3443322111110             


Q ss_pred             hhhhhhhhcccCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCCCCcccCchhhhHHHHHHHhhhHHhhh
Q 018727          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI  340 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~  340 (351)
                            +......+++++|+|.++..++..++..........+.+.| +++.     +|+++.+++.+.+...++.++++
T Consensus       244 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~  312 (438)
T 3o7q_A          244 ------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGR  312 (438)
T ss_dssp             ------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHHH
Confidence                  01112245677889999999998888888888888999999 7775     69999999999998888877766


Q ss_pred             ccc
Q 018727          341 LPF  343 (351)
Q Consensus       341 ~~~  343 (351)
                      +..
T Consensus       313 ~~~  315 (438)
T 3o7q_A          313 FTG  315 (438)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=7.1e-29  Score=228.21  Aligned_cols=275  Identities=12%  Similarity=0.044  Sum_probs=211.7

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      ++.+..+++..+...+..+...+.+|.+.+++ .+..+      .+++.+++.++..++++++|+++||+|||+++.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            34455677777888888888999999999999 99999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh----hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhc
Q 018727          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (351)
Q Consensus       120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (351)
                      ++.+++.+++++    +++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.+++|.+++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    899999999999999998877775 999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCccc-ccccccCccchhHHHHHHHHHHHH-HHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhccc
Q 018727          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (351)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      +       .+| ||+.|         ++.++..++. ++..+++||++++....++++....++. +...+.++.....+
T Consensus       180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  242 (451)
T 1pw4_A          180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD-DYNEKAEQELTAKQ  242 (451)
T ss_dssp             H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH
T ss_pred             H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc-cchhhhhccccccc
Confidence            6       444 55544         5555555443 4455667887654322211111000000 00000000000011


Q ss_pred             CcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      ...++++++|.++..++..++..........++|.|+.+.     +|+++.+++.+.+..+++.+++.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~  308 (451)
T 1pw4_A          243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTLLC  308 (451)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1146678899999999988888888889999999998875     78999999999999888887765543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.94  E-value=2.9e-27  Score=212.40  Aligned_cols=256  Identities=16%  Similarity=0.253  Sum_probs=209.5

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  123 (351)
                      +.++...++..+..+...+.+|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            3456667777788888899999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCCCCCC
Q 018727          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (351)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (351)
                      ++.++.+++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            99999999999999999999999998887775 9999999999999999999999999999999999999987       


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHH-HHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcccccccc
Q 018727          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (351)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (351)
                               ..+|+.++.+.++..++..+ ..+.+||++++++++                      ++....+++++|+
T Consensus       150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~  198 (375)
T 2gfp_A          150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR----------------------TRLLTSYKTLFGN  198 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC----------------------CCTTTCSTHHHHH
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc----------------------ccHHHHHHHHhcC
Confidence                     45566666776666655544 455667765432211                      0122356678889


Q ss_pred             cchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc-ccccc
Q 018727          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF-KIDYR  348 (351)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~r  348 (351)
                      |.++...+..++.......+..+.|.|+.+.     +|+++.+++.+.+...++.+++.+.. ++.||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r  261 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKR  261 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888887777777777777665553     78899999999999888888766543 55554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.94  E-value=1.1e-25  Score=209.41  Aligned_cols=193  Identities=15%  Similarity=0.073  Sum_probs=159.3

Q ss_pred             HHHHHHhhccccchhhhHHHHHHhhcccccc--cchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      .+..++.+++...++..+|.+.++++.+...  ...+.+.+++.+++.+|.++|++++|+++||+|||+++.++.++..+
T Consensus        18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i   97 (491)
T 4gc0_A           18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI   97 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3455677778888888999998887654332  12234478999999999999999999999999999999999999999


Q ss_pred             HHHHhh------------------hhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHH
Q 018727          125 FNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII  185 (351)
Q Consensus       125 ~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (351)
                      +.++++                  ++++++.++++|+++|++.|...+. +.+++|+.|+++|++..++.+.+..+|.++
T Consensus        98 ~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~  177 (491)
T 4gc0_A           98 SGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL  177 (491)
T ss_dssp             HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence            998887                  4789999999999999998887775 999999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCC
Q 018727          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD  247 (351)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  247 (351)
                      ++.++..+..       ..++.... .+.|+.++....+..++.++..+++||+|++...+.
T Consensus       178 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~  231 (491)
T 4gc0_A          178 VYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG  231 (491)
T ss_dssp             HHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT
T ss_pred             hhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC
Confidence            9999887765       33333333 566788888888888888888889999998754433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=4.1e-23  Score=191.97  Aligned_cols=171  Identities=16%  Similarity=0.231  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHH-HHHh-----hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hcChH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~  113 (351)
                      +.++.++...++..+..+...+.++. +.++     +|.+..+      .+++.+++.++..++++++|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            34556666666666666666666654 4444     8999998      9999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccc--hhhhHhHHHHHHHhHHHHHHHhh
Q 018727          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (351)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~  190 (351)
                      ++.++.++.+++.++++++++++.+++.|++.|++.+...+. .++++|++|+++  |+.++++++.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887775 999999999988  77888889999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 018727          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (351)
                      +.+.+                ..+|+.++.+.++..++..+..
T Consensus       167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHH----------------HSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh----------------hhhHHHHHHHHHHHHHHHHHHH
Confidence            99987                4555666666655555444433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.81  E-value=1.3e-19  Score=169.71  Aligned_cols=170  Identities=15%  Similarity=0.173  Sum_probs=140.1

Q ss_pred             HHHHHHHHHhhccccchhhhHHH-HHHhhc------ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh-cChHHH
Q 018727           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVI  115 (351)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~  115 (351)
                      +.++...++..+..+...+.++. +.+++|      .+..+      .+++.+++.++..++.+++|+++||+ |||+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A           15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            34555556666666666666654 566788      89988      99999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhH---HHHHHHhHHHHHHHhh
Q 018727          116 IMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPALG  190 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~  190 (351)
                      .++.++.+++.+++++++ +++.+++.|++.|++.+...+. .++++|++|+++|+++.+.   .+.+.++|..++|.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~  168 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM  168 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 9999999999999998887775 9999999999999876666   8899999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhc
Q 018727          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (351)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (351)
                      +.+.+                ..+|+.++.+.++..++..+..++
T Consensus       169 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          169 PLLLK----------------NFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             THHHH----------------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhc----------------cccHHHHHHHHHHHHHHHHHHHHH
Confidence            99987                445666667666665555444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.80  E-value=4.2e-20  Score=168.22  Aligned_cols=272  Identities=11%  Similarity=0.102  Sum_probs=159.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHH-HhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .+.++.+....++..+......+.+|.+. +++|.+..+      .+++.+...++..++++++|+++||+|||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~   79 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            35555555555666666667778887655 458999999      99999999999999999999999999999999988


Q ss_pred             HHHHHHHHH---HhhhhhhHH-HHHHHHHHhhhhcccchh-HHHHHhhhccc--cchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          119 TASVVIFNT---LFGLSVNFW-MAVLTRFLLGSLNGLLGP-IKAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       119 ~~~~~~~~~---~~~~~~~~~-~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ..+..++..   ...+.+... .++..+.+.|++.+...+ ....+.++.++  ++|+..++.......+|..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~  159 (417)
T 2cfq_A           80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            776654321   112222111 233455555555444332 23333344332  45677788888888999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcc
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      .+.+                 .+|+.++++.++..++..+..+..+|++++..+++++.+.             +.+...
T Consensus       160 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  209 (417)
T 2cfq_A          160 IMFT-----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------NHSAFS  209 (417)
T ss_dssp             HHHH-----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS-------------CCCCCC
T ss_pred             HHHH-----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccccccccccc-------------cccccc
Confidence            8874                 2344444554444333333334444332111100000000             000001


Q ss_pred             cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhh-----cccccc
Q 018727          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHI-----LPFKID  346 (351)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-----~~~~~~  346 (351)
                      ...+++++++|.++...+..+........+.+++|.|+.+....  .+.+....+.+.+...++.+++.     +..|++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g  287 (417)
T 2cfq_A          210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT--GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG  287 (417)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11234577888887766665555555555656678777554211  12345556777666655544433     334666


Q ss_pred             ccc
Q 018727          347 YRF  349 (351)
Q Consensus       347 ~r~  349 (351)
                      +|+
T Consensus       288 ~~~  290 (417)
T 2cfq_A          288 GKN  290 (417)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.62  E-value=4.2e-15  Score=136.20  Aligned_cols=175  Identities=13%  Similarity=0.062  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--cChHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII  116 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~  116 (351)
                      .+.++.+.+..++..+.......+.|.+.++ +|.+..+      .+++.+...++..++.++.|+++||+  |||+.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            3556666666666666777777888877766 7888888      99999999999999999999999999  9999988


Q ss_pred             HHHHHHH-HHHHHhhhh--hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhh
Q 018727          117 MGTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG  191 (351)
Q Consensus       117 ~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~  191 (351)
                      ++..+.. ++.++..+.  .+.+.+.+..++.|++.+...+ ...++.|.+|+++|++++++.+....+ |..++|.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g  404 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  404 (451)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876666 666666655  3677777778888887666655 488999999999999999999999999 9999999999


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhcc
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (351)
                      .+.+                ..+|...+.+.+++.++..+..+..
T Consensus       405 ~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          405 YTVD----------------FFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9988                4456666666666666655554444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.52  E-value=1.1e-13  Score=125.82  Aligned_cols=142  Identities=18%  Similarity=0.125  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchh-HHHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~  162 (351)
                      .++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+ ...+++|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777777888889999999999999999999988888888777777777777777777777776555444 47899999


Q ss_pred             ccccchhhhHhH-HHHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhcccccc
Q 018727          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (351)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (351)
                      +|++.|+++.++ ++.+..+|+.++|.++|.+.+                ..++...+.+.++..++..+. .+..||++
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999998 588889999999999999987                445555666666665555444 44455544


Q ss_pred             c
Q 018727          241 H  241 (351)
Q Consensus       241 ~  241 (351)
                      +
T Consensus       405 ~  405 (417)
T 2cfq_A          405 P  405 (417)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.52  E-value=1.1e-13  Score=126.33  Aligned_cols=145  Identities=10%  Similarity=0.045  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHH-HHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      .++...+..++..........+.|.+ .++ +|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  332 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34444455555555556666777766 655 4888888      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++..++.++..+.++.+.++.. ++.|++.+...+. ..+..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          333 LIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            9988888888887776654444 7778877766664 88889999976 888888776 567999999999999998

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.44  E-value=1.9e-12  Score=119.91  Aligned_cols=184  Identities=12%  Similarity=0.040  Sum_probs=120.2

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHH
Q 018727           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (351)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~  124 (351)
                      ......+......+....+.+.+.+..+.+...      .........+...++.++.+++.||+|||+.++.+.....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            334444444455556666667788777777666      66666677788889999999999999999999988887777


Q ss_pred             HHHHhhhh-----hhHHHHHHHH-HHhhhhcccchhHHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCCCC
Q 018727          125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (351)
Q Consensus       125 ~~~~~~~~-----~~~~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (351)
                      +.+..+..     ++...+.... +..+++.+.....+.+.+|.+|++.|++++++......+|+.+++.+...+.+.. 
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-  433 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-  433 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            66554432     1222222222 2223334333334889999999999999999999999999999988877665310 


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCC
Q 018727          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHN  244 (351)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~  244 (351)
                            +...   ..++..++++.++++++ .++.++++||++.+..
T Consensus       434 ------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL  471 (491)
T 4gc0_A          434 ------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL  471 (491)
T ss_dssp             ------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred             ------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence                  0000   11222334444444444 4456788999986543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.39  E-value=2.4e-12  Score=119.33  Aligned_cols=144  Identities=10%  Similarity=-0.029  Sum_probs=107.6

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHH-----HHH
Q 018727           46 IWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MGT  119 (351)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~  119 (351)
                      ++...+............++.+.++ ++.+..+      .+++.+...++..++.++.|++.||+|||+...     .+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~  361 (491)
T 4aps_A          288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL  361 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence            3333333344444455556655544 5666555      777788888888999999999999999986554     667


Q ss_pred             HHHHHHHHHhhhhh---------hHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHh
Q 018727          120 ASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (351)
Q Consensus       120 ~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  189 (351)
                      ++.+++.++.....         +.+.+.+..++.|++.+...+ ...++.|.+|++.|++++++.+....+|..++|.+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~  441 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL  441 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766665532         566777778888998777666 48899999999999999999999999999999999


Q ss_pred             hhhhcC
Q 018727          190 GGFLAQ  195 (351)
Q Consensus       190 ~~~l~~  195 (351)
                      .+.+.+
T Consensus       442 ~~~~~~  447 (491)
T 4aps_A          442 VTLYNA  447 (491)
T ss_dssp             GGGGGG
T ss_pred             HHHHhc
Confidence            988865

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.11  E-value=9e-12  Score=111.25  Aligned_cols=146  Identities=13%  Similarity=0.075  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhhHHHHHHh-hcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHH
Q 018727           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (351)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  119 (351)
                      +.++...+..++............|.+.++ +|.+..+      .+++.+...++..++.++.+++.||+|++.  ..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~  270 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV  270 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            445555555555555555555666655444 7888888      899999999999999999999999998832  2232


Q ss_pred             HH-HHHHHHH--hhh--hhhHHHHHHHHHHhhhhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhh
Q 018727          120 AS-VVIFNTL--FGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (351)
Q Consensus       120 ~~-~~~~~~~--~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (351)
                      .+ ...+..+  ...  .++.+.+++..++.|++.+...+. ..++.|.+| ++|+++.++.+....+|..++|.+.+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 2222221  112  236666777788888887776664 889999998 8999999999999999999999999988


Q ss_pred             cC
Q 018727          194 AQ  195 (351)
Q Consensus       194 ~~  195 (351)
                      .+
T Consensus       350 ~~  351 (375)
T 2gfp_A          350 PQ  351 (375)
T ss_dssp             HH
T ss_pred             hc
Confidence            76

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.89  E-value=6.1e-09  Score=97.13  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhh----hhhcC----hHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG  146 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G  146 (351)
                      .+++.....++..++.++.+.+.    ||.|+    ++.+.++.++.+++.++.+..         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            45555555555566666666654    55443    356667777777777766653         35667777888889


Q ss_pred             hhcccchhH-HHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcC
Q 018727          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (351)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (351)
                      ++.+...+. ..++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            988777665 8899999999999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-10
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.003
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 33/271 (12%), Positives = 73/271 (26%), Gaps = 27/271 (9%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
              I+       L +   F      + +   ++ +       G+  S        +    
Sbjct: 27  FLGIFFGYAAYYL-VRKNFALAMPYLVEQGFSRGD------LGFALSGISIAYGFSKFIM 79

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC-- 160
           G V+DR   +  +  G           G       ++   F+L  L G    +    C  
Sbjct: 80  GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR 139

Query: 161 ---EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL 217
                + ++ +   +S  + A  +G  I P L                   +     +  
Sbjct: 140 TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL---------------GMAWFNDWHA 184

Query: 218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277
                +  A  V + AF +     +        +   D  +  + + ++E   +    + 
Sbjct: 185 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 244

Query: 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW 308
           +L N  L    I      L      +    +
Sbjct: 245 VLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 23/227 (10%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 25  GCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIG-SY 83
             +  + + T   + +  +    ++       +         +       K  +      
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKP-----VIIMGTASVVIFNTLFGLSVNFWMA 138
           + +    + +     ++  G ++D+  R       V  M   ++         + N  + 
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 346

Query: 139 VLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQP 196
           ++   ++G  + G +  I  +A E+  ++             +  G +   A+ G+    
Sbjct: 347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD- 405

Query: 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH 243
                        FG    F+  +  S+ A  + I      +  H  
Sbjct: 406 ------------FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 20/211 (9%), Positives = 55/211 (26%), Gaps = 14/211 (6%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI----- 155
            +GL++D+ G +  ++     +++    F + +   +      +   + G+         
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 156 --KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213
                A                     +G  +G ++ G +     ++     S       
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
                    +  +  V  A            
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.76
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.56
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.47

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.9e-28  Score=218.38  Aligned_cols=274  Identities=12%  Similarity=0.043  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHH
Q 018727           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (351)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  121 (351)
                      .+..+++..+...++...+....|.+. |+|++..+      .|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus        26 i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          26 IFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            333555566666666667777778765 58999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh----hhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHhHHHHHHHhhhhhcCC
Q 018727          122 VVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (351)
Q Consensus       122 ~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (351)
                      .+++.++++++    ++++.+++.|++.|++.+...+ ...+++|++|+++|++++++.+.+..+|..++|.+++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            99998888765    4677899999999999887766 499999999999999999999999999999999998877651


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcccCcc
Q 018727          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (351)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                            ..+|++.+         ++.++..++ .++...+.+++++.......++.+. +..+...++.+++....+...
T Consensus       179 ------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  242 (447)
T d1pw4a_         179 ------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQIFM  242 (447)
T ss_dssp             ------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHHHH
T ss_pred             ------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhHHH
Confidence                  22444443         444444443 3444555555554332221111110 111111111111112222334


Q ss_pred             cccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhccc
Q 018727          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILPF  343 (351)
Q Consensus       276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~  343 (351)
                      +..++++.++......++..........+.+.|+.+.     .+++..+.+.......+..+++.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (447)
T d1pw4a_         243 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTLLC  305 (447)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhhhhh
Confidence            5678888999888888888888888999999998876     78999999999998888887766554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.3e-18  Score=151.77  Aligned_cols=265  Identities=11%  Similarity=0.078  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHH-HHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .+.++.+....++..+..+...+.+|. +.+++|.|..+      .|++.+++.++..++++++|+++||+|||++++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            466777788888888888888888886 55678999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHH----HHHHHhhhhcccch-hHHHHHhhhcc--ccchhhhHhHHHHHHHhHHHHHHHhhh
Q 018727          119 TASVVIFNTLFGLSVNFWMAV----LTRFLLGSLNGLLG-PIKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~----~~r~l~G~~~g~~~-~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (351)
                      ..+..++..+.....+.....    +.+.+.+.+.+... +......+..+  .+++....+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            988888888777766554433    34444444333322 22222222222  234555677778888899999999998


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhccccccccCCCCCccchhhHHHhhhhhhhhhhhhhcc
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      .+.+                ..+++..........+...+..+..+|++.....++++++..              +...
T Consensus       160 ~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  209 (417)
T d1pv7a_         160 IMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFS  209 (417)
T ss_dssp             HHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCC
T ss_pred             cccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------cccc
Confidence            8875                222222233333334444555566666554333221111000              0001


Q ss_pred             cCcccccccccchHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCCCcccCchhhhHHHHHHHhhhHHhhhcc
Q 018727          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGTKVDTHILP  342 (351)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~  342 (351)
                      .....+.++++..+......................+....  ....+.+....+.......++..++...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (417)
T d1pv7a_         210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIMFF  278 (417)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhhhHHHHHHHHhhhcccccccccc--ccccccchhhhcccccccccccccchhh
Confidence            11122233444444444444444444444444444443332  2224556667777777777666665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.2e-15  Score=133.24  Aligned_cols=139  Identities=18%  Similarity=0.133  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcccchhH-HHHHhhh
Q 018727           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (351)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~  162 (351)
                      .+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+. ..++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777888888999999999999999999999999999999999999999999999999999988777664 8999999


Q ss_pred             ccccchhhhHhHH-HHHHHhHHHHHHHhhhhhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhcccc
Q 018727          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (351)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (351)
                      +|+++|+++.++. +....+|..++|.++|++.+                ..+++..+.+.+++.++..+. .+.+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999975 56778999999999999998                555666666666665554443 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=9.3e-14  Score=124.59  Aligned_cols=170  Identities=13%  Similarity=0.019  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhHHHH-HHhhcccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcChHHHHHH
Q 018727           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (351)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  118 (351)
                      .+.++.+....++.....+....+.+.+ .+.++.+..+      .++..+...++..++.++.|+++||++||+.....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            3445555555555555555555666554 4556788877      88999999999999999999999999987543333


Q ss_pred             HH---HHHHHHHHhh--hhhhHHHHHHHHHHhhhhcccchh-HHHHHhhhccccchhhhHhHHHHHHHh-HHHHHHHhhh
Q 018727          119 TA---SVVIFNTLFG--LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG  191 (351)
Q Consensus       119 ~~---~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~  191 (351)
                      ..   +..++.....  ...+.+...+.-++.|++.+...+ ...+..|.+|++.|+++.|+.+....+ |.+++|.+.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g  401 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  401 (447)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22   2222222222  245667777777788887666555 488999999999999999999887776 5677899999


Q ss_pred             hhcCCCCCCCCcccccccccCccchhHHHHHHHHHHHHHH
Q 018727          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (351)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  231 (351)
                      ++.+                ..+|...+.+..+..++..+
T Consensus       402 ~~~~----------------~~g~~~~~~~~~~~~~~~~~  425 (447)
T d1pw4a_         402 YTVD----------------FFGWDGGFMVMIGGSILAVI  425 (447)
T ss_dssp             HHHH----------------SSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHH----------------HhChHHHHHHHHHHHHHHHH
Confidence            9988                44455555555555444433